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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017164 Bordetella pertussis strain J224 chromosome, complete genome 6 crisprs csa3,cas3,DinG,DEDDh 1 0 26 0

Results visualization

1. NZ_CP017164
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017164_1 250581-250665 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017164_2 432020-432113 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017164_3 996328-996422 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017164_4 1146789-1146922 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017164_5 1819762-1819889 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017164_6 3432390-3432499 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017164_4 4.1|1146840|32|NZ_CP017164|CRISPRCasFinder 1146840-1146871 32 NZ_CP017164.1 1354658-1354689 0 1.0
NZ_CP017164_4 4.1|1146840|32|NZ_CP017164|CRISPRCasFinder 1146840-1146871 32 NZ_CP017164.1 1819737-1819768 0 1.0
NZ_CP017164_4 4.1|1146840|32|NZ_CP017164|CRISPRCasFinder 1146840-1146871 32 NZ_CP017164.1 1996898-1996929 0 1.0

1. spacer 4.1|1146840|32|NZ_CP017164|CRISPRCasFinder matches to position: 1354658-1354689, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

2. spacer 4.1|1146840|32|NZ_CP017164|CRISPRCasFinder matches to position: 1819737-1819768, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

3. spacer 4.1|1146840|32|NZ_CP017164|CRISPRCasFinder matches to position: 1996898-1996929, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27281 : 79601 49 Synechococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_2 107424 : 175245 56 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 178627 : 236262 48 Klosneuvirus(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_4 250675 : 303008 46 Bacillus_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 390843 : 448352 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589354 : 650544 55 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655868 : 702058 49 uncultured_Caudovirales_phage(18.18%) tRNA,tail,terminase,transposase NA
DBSCAN-SWA_8 708224 : 778298 57 Planktothrix_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_9 860765 : 1000551 116 Bacillus_phage(11.76%) transposase NA
DBSCAN-SWA_10 1024355 : 1082437 51 uncultured_Mediterranean_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_11 1086483 : 1158501 55 Planktothrix_phage(18.18%) tRNA,transposase,holin NA
DBSCAN-SWA_12 1216786 : 1298695 58 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_13 1418087 : 1472313 44 Salmonella_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_14 1618193 : 1673784 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_15 1831548 : 1890816 51 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_16 1901056 : 1945377 43 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_17 2148887 : 2219644 60 Lake_Baikal_phage(10.53%) tRNA,transposase,protease NA
DBSCAN-SWA_18 2576461 : 2642961 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_19 2671075 : 2708486 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_20 2813945 : 2886526 59 Diachasmimorpha_longicaudata_entomopoxvirus(14.29%) transposase NA
DBSCAN-SWA_21 2894523 : 2958271 55 uncultured_Mediterranean_phage(22.22%) transposase,protease NA
DBSCAN-SWA_22 2967030 : 3001011 33 Bacillus_virus(50.0%) transposase NA
DBSCAN-SWA_23 3401855 : 3465687 46 Staphylococcus_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_24 3470101 : 3587990 100 Acinetobacter_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_25 3706312 : 3839150 112 uncultured_Mediterranean_phage(10.34%) integrase,tRNA,transposase attL 3754607:3754666|attR 3786342:3786967
DBSCAN-SWA_26 4005260 : 4070170 57 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage