CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017414	Halobacteriovorax marinus strain BE01 chromosome, complete genome	4 crisprs	DEDDh,WYL,cas3,csa3,DinG	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017414_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017414_1

565792-565860

Orphan

Consensus_repeat	Method
TGGAATGGGTGGAATCTATGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017414_1

>merge|NZ_CP017414|1|565792-565860|CRISPRCasFinder
TGGAATGGGTGGAATGTATCCAGGTGGTTTCGGTATGGGTGGTAATCCATACGGTGGAATCTATGGAGG

>NZ_CP017414|1|1|565792-565860|CRISPRCasFinder
TGGAATGGGTGGAATGTATCCAG	GTGGTTTCGGTATGGGTGGTAA
TCCATACGGTGGAATCTATGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017414.1\|WP_096908551.1\|560744_561272_+\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NZ_CP017414.1\|WP_096908549.1\|559076_560033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_157765629.1\|557078_558320_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP017414.1\|WP_096908554.1\|564241_564841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_014243248.1\|578464_579091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908564.1\|577207_578410_+\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|274252
NZ_CP017414.1\|WP_096908552.1\|561466_562027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908561.1\|574056_575919_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP017414.1\|WP_096908553.1\|562063_563632_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP017414.1\|WP_096908560.1\|570739_573415_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235751
NZ_CP017414.1\|WP_096908546.1\|555363_557076_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226715
NZ_CP017414.1\|WP_096908548.1\|558411_558933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_014243241.1\|569817_570732_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|139690
NZ_CP017414.1\|WP_014243243.1\|573541_573961_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_044557219.1\|563716_564160_+\|DUF507-family-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908557.1\|566743_567487_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187721
NZ_CP017414.1\|WP_014243245.1\|575923_576136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908550.1\|560103_560652_-\|dCMP-deaminase-family-protein	unknown	unknown	gnl\|CDD\|238613
NZ_CP017414.1\|WP_096908563.1\|576280_577141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381680
NZ_CP017414.1\|WP_096908558.1\|567483_569817_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443

Protein	Function_ID	Function_description	E-value
NZ_CP017414.1\|WP_096908551.1\|560744_561272_+\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	1.24557e-15
NZ_CP017414.1\|WP_096908546.1\|555363_557076_-\|hypothetical-protein	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	3.97568e-57
NZ_CP017414.1\|WP_157765629.1\|557078_558320_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.97614e-17
NZ_CP017414.1\|WP_096908561.1\|574056_575919_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP017414.1\|WP_096908560.1\|570739_573415_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	0
NZ_CP017414.1\|WP_014243241.1\|569817_570732_+\|hypothetical-protein	gnl\|CDD\|139690	PRK13592, ubiA, prenyltransferase; Provisional.	0.00346341
NZ_CP017414.1\|WP_096908564.1\|577207_578410_+\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	2.1995e-52
NZ_CP017414.1\|WP_096908553.1\|562063_563632_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	7.18015e-127
NZ_CP017414.1\|WP_096908557.1\|566743_567487_+\|hypothetical-protein	gnl\|CDD\|187721	cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	2.50358e-19
NZ_CP017414.1\|WP_096908550.1\|560103_560652_-\|dCMP-deaminase-family-protein	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	1.1406e-40
NZ_CP017414.1\|WP_096908563.1\|576280_577141_+\|hypothetical-protein	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	1.32264e-18
NZ_CP017414.1\|WP_096908558.1\|567483_569817_+\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	1.25751e-100

>NZ_CP017414.1|WP_096908554.1|564241_564841_-|hypothetical-protein
MDFSRLIEWLIFGGILLYAIYSMIAIKEEKQAYVENAKEFELKNFLFFLPSWWGNTTDQYEVDESSHAIFERTDTRYDWRADFIWFKNDAHLADLELEEVLVKKLEELKLIFDPEETIINTPSCFEEFIPYIEGRIDLIHIEGTATENVSERVYFDCYLIKDNINDAYLFAKSRSSILNGAIEGPYFEEVLRTFEFLHQ
>NZ_CP017414.1|WP_044557219.1|563716_564160_+|DUF507-family-protein
MRTDFETLKTLASYSINNLKENRIIEFDIDNREALIDAMATEYGVSFATDEDVRDQAIEEVEEKMGDMVPEDITESEMFNHARKEIIKSFNGENIGGLYLVESLHQIATRMANFLLNCDLIDDVFGTDEEIHAFLVKKIRTFSPKKN
>NZ_CP017414.1|WP_096908553.1|562063_563632_+|murein-biosynthesis-integral-membrane-protein-MurJ
MGQSNSTKRVLLSSSKMAVATFSSRILGLVREQAIAAVFGASGVTDAFTIAYRIPNMLRDLFAEGAFSSAFVPTFTGVRLKNEKLAKGLLWSMAALLALITGVISLLLIVYAKEVVLLFTNEVFNSDPERLEITIGLVRIMAPFLVLISLAALFMGTLNTLKIFFVPSFAPALFNIAMIGCIFLLPDRLKFWGYHPVYSLGVGVMLGGFIQMIVQLPLLFKKGYGPQGPFKLVSTDSKVVLKRVGIGTIGIAATQINVIITTILATSTVVGAVSWLTFAFRLFQFPVGILSVSIAGSNLVHFSEAWKNSEKEKAINYLSTSYFLSFLTIVPAMALLFALAKESIHLVFERGAFDGHDTAMTYQALKYYLVGLPCYGLYKIFAPTFFALDRPKIPVKISIFSIFCNIIFCVYFTPKYGFWILALGTSLSMVLNSLLQAVFLRNLLDISWSFFFKLRILKIIVSGIITYVATLQASQFLFRFEDPFFTKALMFCLSGAFGAVCYGLVLFILGEGRELLRVVRRK
>NZ_CP017414.1|WP_096908552.1|561466_562027_+|hypothetical-protein
MKRLIFSFIFISTLVLIFFIYQSAQRNEIEAKTATESLLVEESSSKDLGEKNIDLISPPHTDDECEKFIKTLSTSEYENIQNRRWSNVHIKYIDGETYRIRYFYDDGPNGEYQKTILYKEDETEFPHIVKVFKGFEQTELKDYFDRGDIIWQEQAYETSIRGKSIYWRKINDEFVDLNIDEGLSCL
>NZ_CP017414.1|WP_096908551.1|560744_561272_+|DUF2799-domain-containing-protein
MKSSILLSLISIFLVSCAGLELTAQQCQSLNWESRGIQDGAKGEFRFSRYRNACSDSQFNVDSVHEAGYLKGFLSQYCKGEVAFRLGKELAEYDISRCDNKKEVLKYFTEGRKRGVLKKQIKDLDQKRRELVAELMRPDLSEEEINRANEQILRYEKEIRELEREFSKLTEDYLE
>NZ_CP017414.1|WP_096908550.1|560103_560652_-|dCMP-deaminase-family-protein
MSEHENHEINFIPAKSPLNWDEYFMLQAMMASFKSKDPSTKVGAVFVDKNNHQVTMGYNGFVAGIDETKLPWGKDPKAPLEYQKYGYVVHAEANAILHSKDSLEGTRAYVTLFPCHECAKLLASSKVCEVVYLSDKHCETESNRISKKIFELAGIEYRQLEIQDTIVNSMHQHFQTLLEQVL
>NZ_CP017414.1|WP_096908549.1|559076_560033_-|hypothetical-protein
MEKYLKPLSSLVIISFFITSIIGWTQGWELLYRPIPGAPALSPYTSVGFITLFLYKLNLQGANISETISNQLKITLLAVLTSILFFQLALYTNKGSEILGYPISSISTILTFFLIIVFEILSNESKEHTLVADAILLTSIFWVYISICGHIFGEVILTGMTENNDIGLSLPTALAFCLYMALLIKDDHLTYTKLLFQTVKWTKKYILVYAISYLLLPLLFILLLKNVEIRPGDHIKIFFSFSTIGLFFISLFLVLIHFLSRTHTGLQMICSYTKRIKTDDGHWISIESYLKENYGHRIKHEESPNGQKAMAKQLKKNS
>NZ_CP017414.1|WP_096908548.1|558411_558933_-|hypothetical-protein
MKKGIISLMLLAMSSLSFAQDADLNLPGERWITSFKDYVCNNRSGEVATPTEFAQMNVKFETATTDYSLDNGLIKATFEENGKVCRYSALLLADNLIASISLVESKAYAVNGDTDCTEGKEILDNAFRGPNDYLYYGHPHNLAIMVPLADADNICPNNGSTIGVNFVLSGRVQ
>NZ_CP017414.1|WP_157765629.1|557078_558320_-|MFS-transporter
MNKNRTKLSIAYLNTLTFSCVQMILYTTIPYIAEQTGVVTANIIGAISIGSLIFSFMGPFWAARSDSLGRKRVLSFGMLGMSLSFILLASLFIFNDTLSLSIKIAMVFASRIIYGLLASAIVPVSQAWQLDLIKETEHIKVLTRNSMCLNLGRILGPILILFKQVNFELIIYAATVWIFTLATSCFLTSDSKGALQGSKSEIKLKEVLANWKLSIKEALYPILLAMIFTSFIGILHTFLGHHLKEVLHIDGKEATILFAKIILVLSILALLVQQLSIWLLKSKWIPRVLIGATSLVTGSIVLMYSKSEQSIWISIFFISFATALIPPVYLSLISNSKKDKTKETVFGKKLGLASVAHSFGYAVGAGLIALSMKLHLVPEKAIVFFVSFTIMALVFILIVKESTPTKTLEVKES
>NZ_CP017414.1|WP_096908546.1|555363_557076_-|hypothetical-protein
MKKRSLNYTFEALVNSLLREFPDSEQIKYVSTEKKIIFTDKQDHQLHLGLSFYSVLGKHQYNEEECSLGEDKISLERALDWIIDFSCQLLDQSNQREITAFKDRVSSSNENIKKFTTHLEERIEERYQSSLNFIDTESLLILGHSFHPYPKARDGFSEEDFQKYSPEFQRGFSLAWAISDDEIIFEKHMQGFDSHWIKHVAISCLGEERVNNILDEGKSLLPIHPYQLKYIREEEYIKSLEEKGKISFIQEDSTTLWYSTSSVRSIYSPTCKYMLKFSLTLRLTNSIRHLQQVEVDRGIQVSKVLNTKEGNELKAKWKDFQIIEEPAYAAFKDQSSKVAINSIVSCRMNPFINGEQDSAILLATLNQLSPSKTSILDQFIERDDKESYLNWFKAFTQKVITPLLDAQANFGIFLGAHQQNIILKLDDAGLPVKMYFRDCQGTGYSEEGFKAYSPYCDEMALDNGNILTEELGQKIFCYYLIINTTFDTISHLSLISGLDESKYLQILNKSLRILKEKGVKDSSCIDYLLNGPYLWVKGNYKCCLKEINENTMKSPTDIYIPMKNRIQENI
>NZ_CP017414.1|WP_096908557.1|566743_567487_+|hypothetical-protein
MKVVLVTSQLNYMPANYSKTIEGILASSNGRITSLIEIENLDYSYIKSGLGLIFYGAKNFGTQLIKNLIQAKISSKKSLCEKYKVDHRLFKSINSREAIEFLEKEQFDLLINLRTRCIYKKKALNSTRLGCVNIHHGLLPKYRGTMCDLNALSENREAGFSIHVMDEKIDNGAILKVVSITANEKDYFKYLGLTKDYEIKAITELLDFVAENNTLPEGEENHVAGSVYTKTPDIKKVREYIKKGMIL
>NZ_CP017414.1|WP_096908558.1|567483_569817_+|AMP-binding-protein
MIKAIVYHGSPGTEEDFKFLEGYLESVVMASRGKSYDGDIYIGYSFGSYFAIKDFVNNPKASKLILISPYLFSEPLGSLKKLLLSNSLSANFLISKLKDKIIDELIEKSAHPKSASNEYREIAARYNNVNILQRAALEKEIPASEIEDLCKKCKDREVVIIWGDQDQSTDLGHIQRIRNLIGAKEITLSAAGHAIPWTHREELMKYILENSKERIGYHSGESAGNNVATFLREHVRENPEKSVLTWVDLQKIAGWKGDLNTPLPHESISVKELDHLVSKISGGLLKLGIKKGDRVIIFIPMSLQLYAAMFALQKIGAVAVFLDSWARRDQLGVSAQTAEPKAILSLEKAFMYLKGVQEIEDIELKISVGPVEGKYDSSLEELMQSEPNDEITPVEKEHTALITFTTGSSGKPKGADRSHRFLSAQHYALNRHIPYIESDVDLPVFPIFSLNNLAAGVTTVIPAIDVGAPNERDPLILIAQFLTMKVTCTTLSPSLLNAVSAFCLKNNLKLNGLKRIVTGGAPVSRDDVQRIKEAAPNAEILVLYGSTEVEPMAHIEAKDMLAQVGDDDPEIVEPGVNVGKFDSGLEVKYIKIINDPITINSESEWQDIEVAKGSAGEIIVSGEHVCRNYYNNEEAFKKTKIVDNQNRVWHRTGDLGFEDEKGDLWLVGRVHNAINRGGEYCFPVRAEIVMKRVSGLLHAAYLGIPDERLTEKPIAVFSVKEGEDASLVRSEIERMLTKNEIIFDDIIHVESIPMDPRHHSKVEYHVLRDSLKNEGKI
>NZ_CP017414.1|WP_014243241.1|569817_570732_+|hypothetical-protein
MQRYNSSEADREYLEDRRKWLTFFKERFDPLSHLVMIILFISGHFSLVDMKIGVEVILAFVGTVVFFFKLRCFDEIKDLDLDFKINSTRPLPRGLVSVFEVKDMALLCLLLENLIFYSISIKSGVAMSLASLYSLIMYKEFFLGTKFRDKLTTYATAHTLVTILLSLSIFCALLNDSIFNLDFKYYAFSIVSWLLFNIFELGRKTFLASEEKNQVESYSKVWGKMGAVVLVLIHVCLAEYILIEVVGLKSNFSYFYFGSCLGLFIALSALFLIKNEGAGGKIYRGFSSFYIILIYLGVVIERII
>NZ_CP017414.1|WP_096908560.1|570739_573415_+|phosphoenolpyruvate-synthase
MLLINKDTTESFAKKQAGGKGYNLYLLARKGVNVPNFSVIPAYLFENFVERNGLREAINEALEKDSFKEAAKQIEEIILKGVFTANEKETIELLIKSFSSTHFSVRSSAGDEDGGEHSYAGQLSSYLYISSLSKCLESIKKCWASAFSERCLVYRKENSINLDRILVSVVIQEMIDPEISGVVFTCNPVTNNTEEIMINSVYGVGEGLVSGLLEGDTFIVSKIDAKVTSREIVEKEKALKGDFENERIIEVAIDKDKAEFESLNEAQITQLCSEATKIEDMYQCAQDIEWAIYDDKIYILQTRPVTTLAATSKGILNLWDNSNIVESYGGITKPLTYGFARYVYNQVYIQFCEVLMVPQNHIKEMNFFLKNMLGLFYGRVYYNLFNWYKLTSILPGYKFNRQFMETMMGTSESLGDEIAERIKPPKFHHSFGSRVRKFLTGFKFFYFHLNIQNIVDKFLIDFHKIYDVYRKKDYYSMSADQIYDEYMGLEKDILWKWHAPIINDFLCMVHFGVYKKLTEKWLDHLGQNFHNDLLAGNGNLESAEPTKQLIRLSGVVVKTNGLRDFIFANENEFLLEALNQSEYQEFYEMVKTYLDKYGFRCMSEMKLEQKDMHLEPKLFFIFLKNIINSGQTNLEEFEKREKEIRENAEKLLSENISGIKGVIYSWSLKHARKAVMNRENTRFCRTRIYGVVRSMFYAMGENFAKSGIIAKDEDIFFLDLEELKGAFEGTNSIQNLKEVIKTRKAQYELYEDSEPDSRFMTRGPVYWKNNHFPPPVVVDQNIELKENEMLGLGCCPGIVEGVVKVILSPEDNLELNGEILVTHRTDPGWIPLYPSASALLVERGGLLSHSAIVAREMGLPTIVSVKGLTKRLETGMRIRINGESGLIEILE
>NZ_CP017414.1|WP_014243243.1|573541_573961_-|hypothetical-protein
MSDLNVGKEILSYCSKCKLTLAHTIVAMKDAQTIHRVECRTCKSTHAYKDPSAVKMKASTRKKTSKKISKTTTSVADLWMEAINSATSKSQPYSIKGQFAQGDIIDHVKFGPGVVDKTIDNDKIEVIFRHQIKTLIHNK
>NZ_CP017414.1|WP_096908561.1|574056_575919_+|excinuclease-ABC-subunit-UvrC
MQNNLLNKAKTLPNKPGCYLMKKAKGTDEIILYVGKAKNLRKRVSSYFNNSSKSPKTEILVSHINDFDFIMTDTDSEAFVLENNLIKKHSPKYNIRLKDDKSYPYIIVNLNEDFPRLVYERRPSKKKGQLVFGPFVVGSNISEVLRVLTKSFNLRDCSLKEFNSRKEPCLLYQMKQCSAPCVDLINKSDYLKDLDLALSFFRGSGREGVLALEEKMFKYAELEQFERAALLRDNIEILKTFLEGSKQTNAEISSSVKNIDIVAYHVGEVEIDISLYMMREGVLLGHKNFHFPAIDCSDSYDDEVAQYIFQYYSSTFDKMPDRVITNFSNEINEVLSKAFEQVHEIKVKCTGAGRKFNSLMKLTMDHAFEHQRVRILNEDSTYIGLNRLKDLLGLRERPVVLECYDIAIFQGKSPTASQIVFTDGRADKSKYRHFHLEERPEGNNDFAMMSEVINRRIKKGNLPDIFVVDGGIGQVNIFLGALKDHNVEVPVVGIAKSKVSKKSTFKSKEVERTDERLIIPGRSNPFQLSKCKSLFRILTQMRDEAHRFSRRLHHKEEKRKLISSWIDQVEGVGPITKKKIISRLDKSVSELKLMNERDIESYFEVSKKVAKAIVKTLALK
>NZ_CP017414.1|WP_014243245.1|575923_576136_-|hypothetical-protein
MSQELDFRFEKFEEYYGDIDQVKKHMDNCNICNAKLVQTHLSDFKNLIVQETARCPECGQGNKKMIHIIN
>NZ_CP017414.1|WP_096908563.1|576280_577141_+|hypothetical-protein
MSKYQKLRNEISKIEGSKGIAKFYSGALFADTSWYTATLDEPEIEEGSAPVALSTTVEEELPPQRPSAEGSPSKAEVLSSLAKKIDEKGAVQSRFGNITKDEKAISLGSKLILTKDQSEYKKLIESNLSSFEFEKFEGVSALIVGESRNVDLNSEQAHYKFSHDNTELLGKMIIPMKLEEGEFLRASLLGDTDEEVLQNLLCEIALFKPKAVISLGAVATNFLYGKKEKLSKIHGQELERIIEIGDESINFTLFPIFHPDLLEINPSMKRTAWMDLQKVMKFLGKI
>NZ_CP017414.1|WP_096908564.1|577207_578410_+|SpoIID/LytB-domain-containing-protein
MHRICFTFIFLLVSLSDSFGEITPILVTGTPEPKIRVRVNKSLKNVIISGTDLNRTFHIGNQTKSFSGRKKIKFNCNLFGKSQRFKAKGPTLLASLNSMTGLVTVGDKKYMGTVDIVSSETNDSCDVIQETRLEDYISGLLAKEMNSAWPIEALKAQAVAARSYALHKMETDHVSRTLGRDAHYDLESSEKHQVSGSFFDITRNTDLATSETMGEVLVTPNGKLTPIFFHAKCGGKILRPDQVWSNAVTGYNANPKGNYCHGHGQKDWVKGLSYDRFASFLKWLQRKKLIHVKSKISGKKRIKILKDNRDRNSLRLYWGDIHIVVKKPLFRRYFGRILFPSNNFSMNWNTQKSKFIISGSGLGHGVGMCQLGALDMAKKGWGYRKILSHYFPGHKIEKAY
>NZ_CP017414.1|WP_014243248.1|578464_579091_-|hypothetical-protein
MKTHSLKKVAIFTLAATLFWSCGDDKKKNTVSSTTTGVTLPTTNTPQLSAGNYSNLLSQINCRSGNRLSNIYSFSSSSFSGNSQTTIQGTFNAGGIGGTTVAREYIGVGYYGDVMIVQKVTNGSQVIGYNVLLSMCSMNSSSGAPYISDSRQLTNFAGKIVLDDEVSCGHGMVDSSQTTMQSQVDPNYPYLPVFKVDTWFTKVGCVSY

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Crispr_ID: NZ_CP017414_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017414_2

566110-566258

Orphan

Consensus_repeat	Method
TGGAATGGGTGGAATCTATGGTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP017414_2

>merge|NZ_CP017414|2|566110-566258|CRISPRCasFinder
TATGGGTGGCGGAATCTATGGTGGTGCCGGATATCCTGGAATGGGCGGAATCTACGGTGGAGCAGGATACCCTGGAATGGGTGGAATCTATGGTGGAGGATACCCAGGTGGTGGACTTTATAATAATGGAATGGGTGGCATCTATGGTG

>NZ_CP017414|2|2|566110-566258|CRISPRCasFinder
TATGGGTGGCGGAATCTATGGTG	GTGCCGGATATCCTGGAATGGGCGGAATCTACGGTGGAGCAGGATACCC
TGGAATGGGTGGAATCTATGGTG	GAGGATACCCAGGTGGTGGACTTTATAATAA
TGGAATGGGTGGCATCTATGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017414.1\|WP_096908551.1\|560744_561272_+\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NZ_CP017414.1\|WP_096908549.1\|559076_560033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_157765629.1\|557078_558320_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP017414.1\|WP_096908554.1\|564241_564841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_014243248.1\|578464_579091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908564.1\|577207_578410_+\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|274252
NZ_CP017414.1\|WP_096908552.1\|561466_562027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908561.1\|574056_575919_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP017414.1\|WP_096908553.1\|562063_563632_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP017414.1\|WP_096908560.1\|570739_573415_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235751
NZ_CP017414.1\|WP_096908546.1\|555363_557076_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226715
NZ_CP017414.1\|WP_096908548.1\|558411_558933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_014243241.1\|569817_570732_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|139690
NZ_CP017414.1\|WP_014243243.1\|573541_573961_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_044557219.1\|563716_564160_+\|DUF507-family-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908557.1\|566743_567487_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187721
NZ_CP017414.1\|WP_014243245.1\|575923_576136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096908550.1\|560103_560652_-\|dCMP-deaminase-family-protein	unknown	unknown	gnl\|CDD\|238613
NZ_CP017414.1\|WP_096908563.1\|576280_577141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381680
NZ_CP017414.1\|WP_096908558.1\|567483_569817_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443

Protein	Function_ID	Function_description	E-value
NZ_CP017414.1\|WP_096908551.1\|560744_561272_+\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	1.24557e-15
NZ_CP017414.1\|WP_096908546.1\|555363_557076_-\|hypothetical-protein	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	3.97568e-57
NZ_CP017414.1\|WP_157765629.1\|557078_558320_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.97614e-17
NZ_CP017414.1\|WP_096908561.1\|574056_575919_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP017414.1\|WP_096908560.1\|570739_573415_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	0
NZ_CP017414.1\|WP_014243241.1\|569817_570732_+\|hypothetical-protein	gnl\|CDD\|139690	PRK13592, ubiA, prenyltransferase; Provisional.	0.00346341
NZ_CP017414.1\|WP_096908564.1\|577207_578410_+\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	2.1995e-52
NZ_CP017414.1\|WP_096908553.1\|562063_563632_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	7.18015e-127
NZ_CP017414.1\|WP_096908557.1\|566743_567487_+\|hypothetical-protein	gnl\|CDD\|187721	cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	2.50358e-19
NZ_CP017414.1\|WP_096908550.1\|560103_560652_-\|dCMP-deaminase-family-protein	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	1.1406e-40
NZ_CP017414.1\|WP_096908563.1\|576280_577141_+\|hypothetical-protein	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	1.32264e-18
NZ_CP017414.1\|WP_096908558.1\|567483_569817_+\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	1.25751e-100

>NZ_CP017414.1|WP_096908554.1|564241_564841_-|hypothetical-protein
MDFSRLIEWLIFGGILLYAIYSMIAIKEEKQAYVENAKEFELKNFLFFLPSWWGNTTDQYEVDESSHAIFERTDTRYDWRADFIWFKNDAHLADLELEEVLVKKLEELKLIFDPEETIINTPSCFEEFIPYIEGRIDLIHIEGTATENVSERVYFDCYLIKDNINDAYLFAKSRSSILNGAIEGPYFEEVLRTFEFLHQ
>NZ_CP017414.1|WP_044557219.1|563716_564160_+|DUF507-family-protein
MRTDFETLKTLASYSINNLKENRIIEFDIDNREALIDAMATEYGVSFATDEDVRDQAIEEVEEKMGDMVPEDITESEMFNHARKEIIKSFNGENIGGLYLVESLHQIATRMANFLLNCDLIDDVFGTDEEIHAFLVKKIRTFSPKKN
>NZ_CP017414.1|WP_096908553.1|562063_563632_+|murein-biosynthesis-integral-membrane-protein-MurJ
MGQSNSTKRVLLSSSKMAVATFSSRILGLVREQAIAAVFGASGVTDAFTIAYRIPNMLRDLFAEGAFSSAFVPTFTGVRLKNEKLAKGLLWSMAALLALITGVISLLLIVYAKEVVLLFTNEVFNSDPERLEITIGLVRIMAPFLVLISLAALFMGTLNTLKIFFVPSFAPALFNIAMIGCIFLLPDRLKFWGYHPVYSLGVGVMLGGFIQMIVQLPLLFKKGYGPQGPFKLVSTDSKVVLKRVGIGTIGIAATQINVIITTILATSTVVGAVSWLTFAFRLFQFPVGILSVSIAGSNLVHFSEAWKNSEKEKAINYLSTSYFLSFLTIVPAMALLFALAKESIHLVFERGAFDGHDTAMTYQALKYYLVGLPCYGLYKIFAPTFFALDRPKIPVKISIFSIFCNIIFCVYFTPKYGFWILALGTSLSMVLNSLLQAVFLRNLLDISWSFFFKLRILKIIVSGIITYVATLQASQFLFRFEDPFFTKALMFCLSGAFGAVCYGLVLFILGEGRELLRVVRRK
>NZ_CP017414.1|WP_096908552.1|561466_562027_+|hypothetical-protein
MKRLIFSFIFISTLVLIFFIYQSAQRNEIEAKTATESLLVEESSSKDLGEKNIDLISPPHTDDECEKFIKTLSTSEYENIQNRRWSNVHIKYIDGETYRIRYFYDDGPNGEYQKTILYKEDETEFPHIVKVFKGFEQTELKDYFDRGDIIWQEQAYETSIRGKSIYWRKINDEFVDLNIDEGLSCL
>NZ_CP017414.1|WP_096908551.1|560744_561272_+|DUF2799-domain-containing-protein
MKSSILLSLISIFLVSCAGLELTAQQCQSLNWESRGIQDGAKGEFRFSRYRNACSDSQFNVDSVHEAGYLKGFLSQYCKGEVAFRLGKELAEYDISRCDNKKEVLKYFTEGRKRGVLKKQIKDLDQKRRELVAELMRPDLSEEEINRANEQILRYEKEIRELEREFSKLTEDYLE
>NZ_CP017414.1|WP_096908550.1|560103_560652_-|dCMP-deaminase-family-protein
MSEHENHEINFIPAKSPLNWDEYFMLQAMMASFKSKDPSTKVGAVFVDKNNHQVTMGYNGFVAGIDETKLPWGKDPKAPLEYQKYGYVVHAEANAILHSKDSLEGTRAYVTLFPCHECAKLLASSKVCEVVYLSDKHCETESNRISKKIFELAGIEYRQLEIQDTIVNSMHQHFQTLLEQVL
>NZ_CP017414.1|WP_096908549.1|559076_560033_-|hypothetical-protein
MEKYLKPLSSLVIISFFITSIIGWTQGWELLYRPIPGAPALSPYTSVGFITLFLYKLNLQGANISETISNQLKITLLAVLTSILFFQLALYTNKGSEILGYPISSISTILTFFLIIVFEILSNESKEHTLVADAILLTSIFWVYISICGHIFGEVILTGMTENNDIGLSLPTALAFCLYMALLIKDDHLTYTKLLFQTVKWTKKYILVYAISYLLLPLLFILLLKNVEIRPGDHIKIFFSFSTIGLFFISLFLVLIHFLSRTHTGLQMICSYTKRIKTDDGHWISIESYLKENYGHRIKHEESPNGQKAMAKQLKKNS
>NZ_CP017414.1|WP_096908548.1|558411_558933_-|hypothetical-protein
MKKGIISLMLLAMSSLSFAQDADLNLPGERWITSFKDYVCNNRSGEVATPTEFAQMNVKFETATTDYSLDNGLIKATFEENGKVCRYSALLLADNLIASISLVESKAYAVNGDTDCTEGKEILDNAFRGPNDYLYYGHPHNLAIMVPLADADNICPNNGSTIGVNFVLSGRVQ
>NZ_CP017414.1|WP_157765629.1|557078_558320_-|MFS-transporter
MNKNRTKLSIAYLNTLTFSCVQMILYTTIPYIAEQTGVVTANIIGAISIGSLIFSFMGPFWAARSDSLGRKRVLSFGMLGMSLSFILLASLFIFNDTLSLSIKIAMVFASRIIYGLLASAIVPVSQAWQLDLIKETEHIKVLTRNSMCLNLGRILGPILILFKQVNFELIIYAATVWIFTLATSCFLTSDSKGALQGSKSEIKLKEVLANWKLSIKEALYPILLAMIFTSFIGILHTFLGHHLKEVLHIDGKEATILFAKIILVLSILALLVQQLSIWLLKSKWIPRVLIGATSLVTGSIVLMYSKSEQSIWISIFFISFATALIPPVYLSLISNSKKDKTKETVFGKKLGLASVAHSFGYAVGAGLIALSMKLHLVPEKAIVFFVSFTIMALVFILIVKESTPTKTLEVKES
>NZ_CP017414.1|WP_096908546.1|555363_557076_-|hypothetical-protein
MKKRSLNYTFEALVNSLLREFPDSEQIKYVSTEKKIIFTDKQDHQLHLGLSFYSVLGKHQYNEEECSLGEDKISLERALDWIIDFSCQLLDQSNQREITAFKDRVSSSNENIKKFTTHLEERIEERYQSSLNFIDTESLLILGHSFHPYPKARDGFSEEDFQKYSPEFQRGFSLAWAISDDEIIFEKHMQGFDSHWIKHVAISCLGEERVNNILDEGKSLLPIHPYQLKYIREEEYIKSLEEKGKISFIQEDSTTLWYSTSSVRSIYSPTCKYMLKFSLTLRLTNSIRHLQQVEVDRGIQVSKVLNTKEGNELKAKWKDFQIIEEPAYAAFKDQSSKVAINSIVSCRMNPFINGEQDSAILLATLNQLSPSKTSILDQFIERDDKESYLNWFKAFTQKVITPLLDAQANFGIFLGAHQQNIILKLDDAGLPVKMYFRDCQGTGYSEEGFKAYSPYCDEMALDNGNILTEELGQKIFCYYLIINTTFDTISHLSLISGLDESKYLQILNKSLRILKEKGVKDSSCIDYLLNGPYLWVKGNYKCCLKEINENTMKSPTDIYIPMKNRIQENI
>NZ_CP017414.1|WP_096908557.1|566743_567487_+|hypothetical-protein
MKVVLVTSQLNYMPANYSKTIEGILASSNGRITSLIEIENLDYSYIKSGLGLIFYGAKNFGTQLIKNLIQAKISSKKSLCEKYKVDHRLFKSINSREAIEFLEKEQFDLLINLRTRCIYKKKALNSTRLGCVNIHHGLLPKYRGTMCDLNALSENREAGFSIHVMDEKIDNGAILKVVSITANEKDYFKYLGLTKDYEIKAITELLDFVAENNTLPEGEENHVAGSVYTKTPDIKKVREYIKKGMIL
>NZ_CP017414.1|WP_096908558.1|567483_569817_+|AMP-binding-protein
MIKAIVYHGSPGTEEDFKFLEGYLESVVMASRGKSYDGDIYIGYSFGSYFAIKDFVNNPKASKLILISPYLFSEPLGSLKKLLLSNSLSANFLISKLKDKIIDELIEKSAHPKSASNEYREIAARYNNVNILQRAALEKEIPASEIEDLCKKCKDREVVIIWGDQDQSTDLGHIQRIRNLIGAKEITLSAAGHAIPWTHREELMKYILENSKERIGYHSGESAGNNVATFLREHVRENPEKSVLTWVDLQKIAGWKGDLNTPLPHESISVKELDHLVSKISGGLLKLGIKKGDRVIIFIPMSLQLYAAMFALQKIGAVAVFLDSWARRDQLGVSAQTAEPKAILSLEKAFMYLKGVQEIEDIELKISVGPVEGKYDSSLEELMQSEPNDEITPVEKEHTALITFTTGSSGKPKGADRSHRFLSAQHYALNRHIPYIESDVDLPVFPIFSLNNLAAGVTTVIPAIDVGAPNERDPLILIAQFLTMKVTCTTLSPSLLNAVSAFCLKNNLKLNGLKRIVTGGAPVSRDDVQRIKEAAPNAEILVLYGSTEVEPMAHIEAKDMLAQVGDDDPEIVEPGVNVGKFDSGLEVKYIKIINDPITINSESEWQDIEVAKGSAGEIIVSGEHVCRNYYNNEEAFKKTKIVDNQNRVWHRTGDLGFEDEKGDLWLVGRVHNAINRGGEYCFPVRAEIVMKRVSGLLHAAYLGIPDERLTEKPIAVFSVKEGEDASLVRSEIERMLTKNEIIFDDIIHVESIPMDPRHHSKVEYHVLRDSLKNEGKI
>NZ_CP017414.1|WP_014243241.1|569817_570732_+|hypothetical-protein
MQRYNSSEADREYLEDRRKWLTFFKERFDPLSHLVMIILFISGHFSLVDMKIGVEVILAFVGTVVFFFKLRCFDEIKDLDLDFKINSTRPLPRGLVSVFEVKDMALLCLLLENLIFYSISIKSGVAMSLASLYSLIMYKEFFLGTKFRDKLTTYATAHTLVTILLSLSIFCALLNDSIFNLDFKYYAFSIVSWLLFNIFELGRKTFLASEEKNQVESYSKVWGKMGAVVLVLIHVCLAEYILIEVVGLKSNFSYFYFGSCLGLFIALSALFLIKNEGAGGKIYRGFSSFYIILIYLGVVIERII
>NZ_CP017414.1|WP_096908560.1|570739_573415_+|phosphoenolpyruvate-synthase
MLLINKDTTESFAKKQAGGKGYNLYLLARKGVNVPNFSVIPAYLFENFVERNGLREAINEALEKDSFKEAAKQIEEIILKGVFTANEKETIELLIKSFSSTHFSVRSSAGDEDGGEHSYAGQLSSYLYISSLSKCLESIKKCWASAFSERCLVYRKENSINLDRILVSVVIQEMIDPEISGVVFTCNPVTNNTEEIMINSVYGVGEGLVSGLLEGDTFIVSKIDAKVTSREIVEKEKALKGDFENERIIEVAIDKDKAEFESLNEAQITQLCSEATKIEDMYQCAQDIEWAIYDDKIYILQTRPVTTLAATSKGILNLWDNSNIVESYGGITKPLTYGFARYVYNQVYIQFCEVLMVPQNHIKEMNFFLKNMLGLFYGRVYYNLFNWYKLTSILPGYKFNRQFMETMMGTSESLGDEIAERIKPPKFHHSFGSRVRKFLTGFKFFYFHLNIQNIVDKFLIDFHKIYDVYRKKDYYSMSADQIYDEYMGLEKDILWKWHAPIINDFLCMVHFGVYKKLTEKWLDHLGQNFHNDLLAGNGNLESAEPTKQLIRLSGVVVKTNGLRDFIFANENEFLLEALNQSEYQEFYEMVKTYLDKYGFRCMSEMKLEQKDMHLEPKLFFIFLKNIINSGQTNLEEFEKREKEIRENAEKLLSENISGIKGVIYSWSLKHARKAVMNRENTRFCRTRIYGVVRSMFYAMGENFAKSGIIAKDEDIFFLDLEELKGAFEGTNSIQNLKEVIKTRKAQYELYEDSEPDSRFMTRGPVYWKNNHFPPPVVVDQNIELKENEMLGLGCCPGIVEGVVKVILSPEDNLELNGEILVTHRTDPGWIPLYPSASALLVERGGLLSHSAIVAREMGLPTIVSVKGLTKRLETGMRIRINGESGLIEILE
>NZ_CP017414.1|WP_014243243.1|573541_573961_-|hypothetical-protein
MSDLNVGKEILSYCSKCKLTLAHTIVAMKDAQTIHRVECRTCKSTHAYKDPSAVKMKASTRKKTSKKISKTTTSVADLWMEAINSATSKSQPYSIKGQFAQGDIIDHVKFGPGVVDKTIDNDKIEVIFRHQIKTLIHNK
>NZ_CP017414.1|WP_096908561.1|574056_575919_+|excinuclease-ABC-subunit-UvrC
MQNNLLNKAKTLPNKPGCYLMKKAKGTDEIILYVGKAKNLRKRVSSYFNNSSKSPKTEILVSHINDFDFIMTDTDSEAFVLENNLIKKHSPKYNIRLKDDKSYPYIIVNLNEDFPRLVYERRPSKKKGQLVFGPFVVGSNISEVLRVLTKSFNLRDCSLKEFNSRKEPCLLYQMKQCSAPCVDLINKSDYLKDLDLALSFFRGSGREGVLALEEKMFKYAELEQFERAALLRDNIEILKTFLEGSKQTNAEISSSVKNIDIVAYHVGEVEIDISLYMMREGVLLGHKNFHFPAIDCSDSYDDEVAQYIFQYYSSTFDKMPDRVITNFSNEINEVLSKAFEQVHEIKVKCTGAGRKFNSLMKLTMDHAFEHQRVRILNEDSTYIGLNRLKDLLGLRERPVVLECYDIAIFQGKSPTASQIVFTDGRADKSKYRHFHLEERPEGNNDFAMMSEVINRRIKKGNLPDIFVVDGGIGQVNIFLGALKDHNVEVPVVGIAKSKVSKKSTFKSKEVERTDERLIIPGRSNPFQLSKCKSLFRILTQMRDEAHRFSRRLHHKEEKRKLISSWIDQVEGVGPITKKKIISRLDKSVSELKLMNERDIESYFEVSKKVAKAIVKTLALK
>NZ_CP017414.1|WP_014243245.1|575923_576136_-|hypothetical-protein
MSQELDFRFEKFEEYYGDIDQVKKHMDNCNICNAKLVQTHLSDFKNLIVQETARCPECGQGNKKMIHIIN
>NZ_CP017414.1|WP_096908563.1|576280_577141_+|hypothetical-protein
MSKYQKLRNEISKIEGSKGIAKFYSGALFADTSWYTATLDEPEIEEGSAPVALSTTVEEELPPQRPSAEGSPSKAEVLSSLAKKIDEKGAVQSRFGNITKDEKAISLGSKLILTKDQSEYKKLIESNLSSFEFEKFEGVSALIVGESRNVDLNSEQAHYKFSHDNTELLGKMIIPMKLEEGEFLRASLLGDTDEEVLQNLLCEIALFKPKAVISLGAVATNFLYGKKEKLSKIHGQELERIIEIGDESINFTLFPIFHPDLLEINPSMKRTAWMDLQKVMKFLGKI
>NZ_CP017414.1|WP_096908564.1|577207_578410_+|SpoIID/LytB-domain-containing-protein
MHRICFTFIFLLVSLSDSFGEITPILVTGTPEPKIRVRVNKSLKNVIISGTDLNRTFHIGNQTKSFSGRKKIKFNCNLFGKSQRFKAKGPTLLASLNSMTGLVTVGDKKYMGTVDIVSSETNDSCDVIQETRLEDYISGLLAKEMNSAWPIEALKAQAVAARSYALHKMETDHVSRTLGRDAHYDLESSEKHQVSGSFFDITRNTDLATSETMGEVLVTPNGKLTPIFFHAKCGGKILRPDQVWSNAVTGYNANPKGNYCHGHGQKDWVKGLSYDRFASFLKWLQRKKLIHVKSKISGKKRIKILKDNRDRNSLRLYWGDIHIVVKKPLFRRYFGRILFPSNNFSMNWNTQKSKFIISGSGLGHGVGMCQLGALDMAKKGWGYRKILSHYFPGHKIEKAY
>NZ_CP017414.1|WP_014243248.1|578464_579091_-|hypothetical-protein
MKTHSLKKVAIFTLAATLFWSCGDDKKKNTVSSTTTGVTLPTTNTPQLSAGNYSNLLSQINCRSGNRLSNIYSFSSSSFSGNSQTTIQGTFNAGGIGGTTVAREYIGVGYYGDVMIVQKVTNGSQVIGYNVLLSMCSMNSSSGAPYISDSRQLTNFAGKIVLDDEVSCGHGMVDSSQTTMQSQVDPNYPYLPVFKVDTWFTKVGCVSY

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Crispr_ID: NZ_CP017414_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017414_3

1659170-1659304

Orphan

Consensus_repeat	Method
GCCTATGCACTGCTGTCACTGACGTGACACAGGTGCACAACGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017414_3

>merge|NZ_CP017414|3|1659170-1659304|CRISPRCasFinder
GCCTATGCACTGCTGTCACTGACGTGACACAGGTGCACAACGGTCCAAGTCCGTTAGGACTTGGCGGGCGCTTCGGGTACTACGACCCTCCGCCTATGCACTGCTGTCACTGACGTGACACAGGTGCACAACGGT

>NZ_CP017414|3|3|1659170-1659304|CRISPRCasFinder
GCCTATGCACTGCTGTCACTGACGTGACACAGGTGCACAACGGT	CCAAGTCCGTTAGGACTTGGCGGGCGCTTCGGGTACTACGACCCTCC
GCCTATGCACTGCTGTCACTGACGTGACACAGGTGCACAACGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017414.1\|WP_096909446.1\|1657587_1658175_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NZ_CP017414.1\|WP_096909449.1\|1663189_1664158_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP017414.1\|WP_096909453.1\|1668880_1670803_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235500
NZ_CP017414.1\|WP_083886017.1\|1661710_1662607_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|215272
NZ_CP017414.1\|WP_157765722.1\|1665855_1668072_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_CP017414.1\|WP_096910596.1\|1655751_1656216_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP017414.1\|WP_083885966.1\|1668098_1668815_-\|1-acylglycerol-3-phosphate-O-acyltransferase	unknown	unknown	gnl\|CDD\|184979
NZ_CP017414.1\|WP_044557420.1\|1657020_1657470_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096909448.1\|1658493_1658808_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|162974
NZ_CP017414.1\|WP_096909450.1\|1664214_1665168_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274042
NZ_CP017414.1\|WP_096909445.1\|1656205_1656781_-\|septum-formation-protein-Maf	unknown	unknown	gnl\|CDD\|376812
NZ_CP017414.1\|WP_096909451.1\|1665314_1665854_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_014244310.1\|1659350_1661708_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|178056
NZ_CP017414.1\|WP_096909443.1\|1653598_1654771_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP017414.1\|WP_014244319.1\|1672008_1672269_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096909447.1\|1658186_1658504_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096909442.1\|1652360_1653557_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380570
NZ_CP017414.1\|WP_157765723.1\|1670921_1671875_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274042
NZ_CP017414.1\|WP_096909444.1\|1654930_1655725_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_CP017414.1\|WP_157765721.1\|1656848_1657016_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017414.1\|WP_096909446.1\|1657587_1658175_+\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	1.16401e-08
NZ_CP017414.1\|WP_096909449.1\|1663189_1664158_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.34276e-51
NZ_CP017414.1\|WP_096909453.1\|1668880_1670803_-\|hypothetical-protein	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	0.00633286
NZ_CP017414.1\|WP_083886017.1\|1661710_1662607_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|215272	PLN02492, PLN02492, ribonucleoside-diphosphate reductase.	0
NZ_CP017414.1\|WP_083885966.1\|1668098_1668815_-\|1-acylglycerol-3-phosphate-O-acyltransferase	gnl\|CDD\|184979	PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional.	5.05572e-64
NZ_CP017414.1\|WP_096910596.1\|1655751_1656216_+\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	2.09444e-65
NZ_CP017414.1\|WP_096909448.1\|1658493_1658808_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	4.69215e-25
NZ_CP017414.1\|WP_157765722.1\|1665855_1668072_-\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	2.23813e-118
NZ_CP017414.1\|WP_096909445.1\|1656205_1656781_-\|septum-formation-protein-Maf	gnl\|CDD\|376812	pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.	5.5869e-64
NZ_CP017414.1\|WP_014244310.1\|1659350_1661708_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|178056	PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit.	0
NZ_CP017414.1\|WP_096909443.1\|1653598_1654771_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	1.93625e-167
NZ_CP017414.1\|WP_096909450.1\|1664214_1665168_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.5814e-46
NZ_CP017414.1\|WP_096909442.1\|1652360_1653557_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380570	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	1.38265e-160
NZ_CP017414.1\|WP_157765723.1\|1670921_1671875_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	5.5842e-29
NZ_CP017414.1\|WP_096909444.1\|1654930_1655725_+\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0

>NZ_CP017414.1|WP_096909448.1|1658493_1658808_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRDIQYFVTKNGRSPFINWINSIDIKTQVIVDRFIQRVAAGSARKSIKYLKDGVSEIKIPHGPAIRVYFAQTKEEIILLLVGGDKKTQPKDIEKAKKYWREYGE
>NZ_CP017414.1|WP_096909447.1|1658186_1658504_-|hypothetical-protein
MANRHGSYNEVLAEKFNDKEYAREFLLNLVNEEELSLEDAISEVIKAMSLTKFAKLSGQSISQTSDFISKRQRWSSDKLIKITKKVFDLQVKLTIESSDYKSKAS
>NZ_CP017414.1|WP_096909446.1|1657587_1658175_+|FecR-domain-containing-protein
MKFLTLCAFLVFALPAMALPTAKITKLRGEVLFNGVALKKGSEITKSGVLKTKGRSFVKLEISKWNNSIVLGPNGEMNLDLSKKEVSKSYNFIKGRMRWLTGKGKKSSGVIHTKQASVGVRGTDYLLIANSLLGETEIIVFDGRVQFQNASDLKDSKILKKNQWGGLGGRYGASIGKVLDLPPNVINAFSKQLNW
>NZ_CP017414.1|WP_044557420.1|1657020_1657470_-|hypothetical-protein
MRILIYLGTIAIMLMAFEVKASWQEFEQAEIDVSPWLYEEDTDFGPWQEYITMGTARSQSIKVEEKSLTYKNTIVAVTQRITNISTTPYCLIASLKHSTNTINTYLRGGKTIVSPGETILIGGYRVKTLGRNWKVNWSFQATKRLERCR
>NZ_CP017414.1|WP_157765721.1|1656848_1657016_+|hypothetical-protein
MAEETLEVLITAVWFLIPIVFTIGLIKQSLGEQDVHPENYENTELEQPDDHDRAA
>NZ_CP017414.1|WP_096909445.1|1656205_1656781_-|septum-formation-protein-Maf
MEIILASTSPYRREQLQRIVSDFESLPPGIDEDSFKDSITDPHQLAQKLSYEKARSVLDKRPNAFVIGGDQVLSIEGEILGKPGTEQKAIQQLQRLSGKTHQLITATTYMSANFCETITIVAKMKMRSLKSDQIESYIKKESPLGCCGSYMLEHSGIALFESIECEDYTAIIGLPLMSSASVLMKNGLSIF
>NZ_CP017414.1|WP_096910596.1|1655751_1656216_+|dihydrofolate-reductase
MGRNRELGLSNKLLWHLPEDLKNFKRLTIGKSMIMGRKTFESIGRPLPKRETIILTRDKNYSYEGCKVFHSMEEIEDYLISKGETDAAVVGGGEIYKLYLPKCSKMYLSYVDYAGQADTFFPEFDDGEWVRSEETSHQAYENFLAWEFVELSRK
>NZ_CP017414.1|WP_096909444.1|1654930_1655725_+|thymidylate-synthase
MKQYLDLMKHVLDNGVEKSDRTGTGTISCFGYQARYDLSEGFPLVTTKKCHLRSIIHELLWFLKGDTNINYLKENKVTIWDEWADEDGNLGPVYGAQWRKWQRPDGSHVDQISNLVEQIKNNPDSRRLIVSAWNPGVIDQMALPPCHAFFQFFVANGKLSCQLYQRSADIFLGVPFNIASYALLTMMMAQVTGLEAGEFIHTLGDAHLYSNHLDQAKLQLSRDPRPLPQMKINPEVKNIFEFNFSDFELVGYDPHPHIKAPVAV
>NZ_CP017414.1|WP_096909443.1|1653598_1654771_-|DUF1343-domain-containing-protein
MVTNGIELLSSETHLNKLKGNIALLCHSASVDRNFKHSVKILQDLVGKRLIKIFGPQHGFVTDVQDNMIETEDFIHPYFNIPVHSLYGETRVPTTKMLEGVDTLVVDLQDVGTRVYTYISTLTLAMEKCATLGVKVVVLDRPNPVGGEIIEGTILEDEFKSFVGRYPMPQRHAMTMGEVGYFAKKNFNIDVDYDVVKMTGWKRDMMWEETGLPWVNPSPNLPTSIGALTFVGTVLFEGTKLSEGRGTTRSLEVIGHPSIEPFKFVDYLNEKIECDGSFVLRPVTFHPMFQKHAGLTCGGVHIHPLKQKDFRPWRISQLLCREFKNFLGNEFQWQDAAYEYEYDKMAIDLINGTSEVRHWIERNGDLNELLVLEVKGYDAYQSMRNDALIY
>NZ_CP017414.1|WP_096909442.1|1652360_1653557_-|ABC-transporter-substrate-binding-protein
MLCYTFMTIKFIHTYQGEIKVIKKSHLTKLFTIGALALSLAPVSIAAKREVKIGAVFPMTGPVATYGQESVNGIKLALKKINQEGKVSINLTVEDNKSEPQESANAVTKLINSDQVDAIIGSVASSNTLAGAPIAQTNKVPLLTPASTNEKVTMTGDYISRTCFTDAFQGVVMAKFAYENLKKRKMAIIIDNSSDYSKGLSKVFKKKFKELGGKLVSDEDFAYIQKDTDFRSLLRKIKRTKPDAIFLPGYYTEVGLILKQARQMGLNMPFLGGDGWDSPTLQKLAGAAVSGNYISSHFAPDDKDPRVQAFVKEYEAAYGQKPGAMAALGYDGILVMANAISNAKSTKRSDIQAAILATKGFVGVTGAITIDGNRNASKSAVVLETTPSGNVFNTKVNP
>NZ_CP017414.1|WP_014244310.1|1659350_1661708_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MYVITRSGEREPIKFDKITERIESLAFDLDKEFIDPSLITSKVIEGIFDGISTPELDKLAGETAAYLSTQHPDYSKLAGRIAVSNLHKETRGCFSENIKEMYNYVNPATGEMAPLISKELYEVVMENAEMLDTAVDDKRDFNYDYFGFKTLERSYLLKMDGKITERPGQMLMRVSVGIHMNDMKAAIETYNLMSEKYFTHASPTLFNSGTSKPQLSSCFLLTMKDDSIEGIYDTLKQSALISQSAGGIGLSIHNIRAKGSFIKGTNGTSNGIVPMLKVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADGMWSLFCPHECPGMAETYGAEFEALYTKYESEGKAKKVVRAQDLWFAVLESQIETGSPYMLYKDSINEKSNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASIALNMFVDEATKTYDHKKLYDVVYRATLNLNRIIDINYYPVPEAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPEALELNNQIFETIYFAALSASKDLAMKDGAYETYEGSPMSQGQFQFDMWGVTPSAKNWDWSALRKEVAEHGVRNSLLVAPMPTASTSQILGNNECFEPITSNIYVRRVLSGEFAVVNKFLVNDLIRAGLWDDKMRNEIIANNGSIQAIERIPEELKGLYKTVWEISQKTVINMSAGRAPYIDQGQSLNIHMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAAVNAVQFTVKNDTPKVNKEDAQAAMVCSIENPDDCVMCGS
>NZ_CP017414.1|WP_083886017.1|1661710_1662607_-|ribonucleotide-diphosphate-reductase-subunit-beta
MYKNHMAVFWTADELDFASDITDWEKLNKDEQHFIKHILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDPKEKDELFHAVTHFPFVEKKADWAMKWMQSKRSFAERLIAFAAIEGIFFSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHIHELLTPEEQLNKETITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYNTENPFDWMELISLEGKTNFFEKRVSEYQKPGVLGDRAQNTFTLDAEF
>NZ_CP017414.1|WP_096909449.1|1663189_1664158_-|DUF21-domain-containing-protein
MTLLIFFIFISIFISFLCSVLEAVVLSVTPSYLGSIENSDPKLHKKLKPLLENIERPLAAILSLNTFAHTIGATGAGAQVQLLFGETYLTLFSVILTFAILILSEIIPKSIGARHWKKLMAPVAFILPLFIFVSFPLVWLSEVISKALKSGEDDKLSRDEIHAVAEIGMRDGAIFPEEYEAFKSMLSFPRKPISHITLRPENIFTLPITTKTKDIPALCQNHKYSRIPITGDYQYDIRGYVLRSEVLEAIILDPETPLNELVKPMLQVAQDTKIRKVFQKLIQRKEHMASVHCESGELKGIVTLEDIIEEILGLDIRDETDD
>NZ_CP017414.1|WP_096909450.1|1664214_1665168_-|tyrosine-type-recombinase/integrase
MGERKIESSAHPFTIYQEFFDNFNSLHTRRSYEIDIRHFFSWAHEQFNISSYGDLERDHIIKYRNFLQEAGGRDGSPCAPKTVARKLAALSSYSDFLVERSILEFNPVTSIKRPRRDVKTPTNALSGTQVRELLEAIPGDTPAGILHRALLMMFFTTGLRKSEILNLKFKDYREINEYRVLEFIGKGGKIGQKVLHPDAVELLDLYLVEMQRQGRELGQEDWLFQPSHNPTNPQNLNKPLNPRTINEIIDYYAKKIGLNFKVTPHSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEYDKRRKRLSDSPIFKLKY
>NZ_CP017414.1|WP_096909451.1|1665314_1665854_+|hypothetical-protein
MDLIRRKKSILNFKQLKEIGLRSSLINCDGPFLIQKSKNGKQILKSSDPFERNLFKKSQGIFGFRENVILRVKTIQGTSIESNILKGEFDSFKNMELLEREIRSLDFKVRKNSFDIAYFEIIHTHPTGCYLQRDDEYEVISLGGLSEADYMAANYLSEKYGYHFKLKAICPGEITYCSA
>NZ_CP017414.1|WP_157765722.1|1665855_1668072_-|penicillin-acylase-family-protein
MIKISNKPQSITYKNHQIQIKRRKSGITEVTAKDKNSSAFAQALCHCEDRFMQLFLLRIIGRGRICELLKDDDESLKIDIFMRQMNFYGATHEDMNQLPKEVLDYFQAYADGVNYHLEKRGKSWEFKFLNVHLDPWSIQDSLMVIKIMSFIGLAQTQGDAEKFIIQSLREGVEIEKFKSLFTPHLDGLTEDIVKDLKKLKYFEGLIPDEIKFNQFLPKMMASNNWIVAPSKSETGSVIACNDPHLEVNRLPAIWYEQVVHIGERNFQGVSMPGLPGIIMGRSDKVSFGFTYGFMDMVDYFIEEITGERCLRDGEYCEQTIREEVILRKKSSDFKFKIYENDCGILESNPFSEELEDGYYLTRAWSAHHLGAKGSAIALYEMIECDDVHTMKEALSKISISCNWLLGDSLGNIAYQQSGMAPKRNSSGLYPLRASDPLNHWQDLLETQDLLSVINPEKGFLATANNDLCDFANESSPLTINLPMGPYRVDRINHLLSEKEKFSLEELKNMQSDLYSIQGHYFMEELRALLSSDKVSKELDQWDLCYDRNSRGATLFEDFYFNLLEEVFTKDFYPTDAWKFIANRSSILVDFYHFFDQIIITENPLWFKERSKMDCFRNALAKTQKKYSRKDIPTWGELRRVKMNNILFDGKLPSFLGFDYGPISIEGSRATIVQGALYESHGRISTFCPSMRFVTDLSTRESHTVLAGGVSDRRFSKLYTSEIEDWLNFRYKVESLERE
>NZ_CP017414.1|WP_083885966.1|1668098_1668815_-|1-acylglycerol-3-phosphate-O-acyltransferase
MILKILRFILATILLACVGIVGTIVSALRPFNPNNVYIMSRMVRLGTKILGIEVIKRNTQIMEENRPGLFISNHQHNIDVFLACEILPDRTVSLGKKSLRWIPLFGQFYWLSGNVLIDRKNKRRAHGTMDQVGEAIRERNTSIWMMPEGTRSHGRGVLPFKKGAFFTAINAQIPITPICISTYNTGLDFSKWKAGKVIIEVLDPIPTKGLTKRDVGQLCETTYQLVKNKVAQLDSELA
>NZ_CP017414.1|WP_096909453.1|1668880_1670803_-|hypothetical-protein
MKLILQSIFAIACLLMVDLSFADEFDTKREACRKDSSKTWDDNLNRCMTTKRSKKGLEEYRNCTLYEKKEDRDRCMFNLVKKVSGDAELEDTNWDSLLIDTISTGISISNLNFVGEGEMSPCLSLKMGATCGGLAILKTLYIMYEAKKETKDNLKEFEDKAADKENYDAQVLAYDSQIKQLKSLSKFYDKKQKLNKLIAACYTATAAYAAYEAVGASIPSCVTGAGQADQADQANQANQADQAADTQDPVQESSSDTADTAAAPEKVYEQTQLQTLVSKIPALGAYVKKFGGSMMEFLATPAGVATLALTNAGWNLIKANKLQEQGEKADLLAKRSEVARDQFVTSMEKYCPNGHEDKNNLMCYCYENGEKKANRTNSDSCKALWAKNERNLFAASSDKTRKSGSDTTKVGCLTLNGKFDPSCQCRKFKDTQGNNACKKTNFSTVQLAGLGQVMDVKQLETDLNNISSGLTSATGFDMTPEQTQALGGKVRDQILRQIPFEDKKGVRPGTPEDLAAVQKNLLSGITRQLAANPVSADNFDRELNKIQEEMSEKFSEKSAQSEVKKLKLTGGKGAAKKNNKKQNFALNLGGSSSNVEQYPEYMNKKYKTKNADVVTNKDVSIFQVLSNRYYKSGFKRLFDE
>NZ_CP017414.1|WP_157765723.1|1670921_1671875_-|tyrosine-type-recombinase/integrase
MNKKNQGWLQEFLDNCQRQNKSPHTIKNYRSDLEKYLTWYEYQFRGPISQKNNDTIGQYKEFLLNGGEVNQRAHLFRRLFWFLKSERKKLVQKPLGNNSAKRHLSTLKNFYEFLKQNHEDHSNLFSINPVKEKIHSIKVKDIDIEHTPILPYDQWRTLIESTYRTRERVILQLLYWGGLRLSELSGLRYNDFQAIRKTITLRRKGGYRHELKIQNFDEIFKNIQFMEQSAQSEYIFVNKSNRAISTRSMYSLIKKLLLRSNCSTNIGPHSFRKACATNLYKRTKDLLFVRDYLNHSDAKVTQTYIDTNTLYLEHQVQ
>NZ_CP017414.1|WP_014244319.1|1672008_1672269_-|hypothetical-protein
MSDDNAAKNLQYMEVSDQRGLGSLADSSPSENSDLYGGYLSKNISLFGKCVIGFMLLSFVVSFLFLIFSYTPYGTEFLRELKFQII

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Crispr_ID: NZ_CP017414_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017414_4

2671438-2671531

Orphan

Consensus_repeat	Method
GGGTTGTTCGGCGTTAAATAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017414_4

>merge|NZ_CP017414|4|2671438-2671531|CRISPRCasFinder
GGGTTGTTCGGCGTTAAATAGCTTCGCATCCAAACGCGACACCCGATCTCGCGCTTCCTGCGCTCGCCTGGGTTGTTCGGCGTTAAATAGCGTC

>NZ_CP017414|4|4|2671438-2671531|CRISPRCasFinder
GGGTTGTTCGGCGTTAAATAGCTTC	GCATCCAAACGCGACACCCGATCTCGCGCTTCCTGCGCTCGCCT
GGGTTGTTCGGCGTTAAATAGCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017414.1\|WP_096910082.1\|2664011_2664878_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|224279
NZ_CP017414.1\|WP_096910089.1\|2672123_2673287_-\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|366092
NZ_CP017414.1\|WP_172867703.1\|2676435_2677059_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|275385
NZ_CP017414.1\|WP_096910088.1\|2670145_2671174_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_157765794.1\|2667325_2668021_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP017414.1\|WP_096910081.1\|2663146_2664022_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP017414.1\|WP_044557603.1\|2664908_2665682_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|181604
NZ_CP017414.1\|WP_096910086.1\|2668608_2669091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096910087.1\|2669297_2670053_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096910092.1\|2677953_2678619_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP017414.1\|WP_014245268.1\|2678615_2680196_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|183285
NZ_CP017414.1\|WP_014245263.1\|2674731_2675355_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP017414.1\|WP_096910093.1\|2680214_2681435_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP017414.1\|WP_096910090.1\|2675356_2676415_-\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|370773
NZ_CP017414.1\|WP_157765795.1\|2668082_2668415_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_044557608.1\|2671647_2671866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_096910083.1\|2665868_2667326_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_157765796.1\|2677211_2677733_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223542
NZ_CP017414.1\|WP_044557602.1\|2662690_2663185_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017414.1\|WP_014245262.1\|2673289_2674633_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206

Protein	Function_ID	Function_description	E-value
NZ_CP017414.1\|WP_096910082.1\|2664011_2664878_-\|OmpA-family-protein	gnl\|CDD\|224279	COG1360, MotB, Flagellar motor protein [Cell motility and secretion].	4.00919e-24
NZ_CP017414.1\|WP_096910089.1\|2672123_2673287_-\|chorismate-binding-protein	gnl\|CDD\|366092	pfam00425, Chorismate_bind, chorismate binding enzyme. This family includes the catalytic regions of the chorismate binding enzymes anthranilate synthase, isochorismate synthase, aminodeoxychorismate synthase and para-aminobenzoate synthase.	1.09571e-59
NZ_CP017414.1\|WP_096910081.1\|2663146_2664022_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.88706e-42
NZ_CP017414.1\|WP_157765794.1\|2667325_2668021_-\|hypothetical-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	0.000445673
NZ_CP017414.1\|WP_044557603.1\|2664908_2665682_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|181604	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed.	9.97527e-80
NZ_CP017414.1\|WP_014245268.1\|2678615_2680196_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	3.85971e-167
NZ_CP017414.1\|WP_096910092.1\|2677953_2678619_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.00019e-11
NZ_CP017414.1\|WP_014245263.1\|2674731_2675355_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.40118e-53
NZ_CP017414.1\|WP_096910093.1\|2680214_2681435_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.12236e-157
NZ_CP017414.1\|WP_096910090.1\|2675356_2676415_-\|DUF2232-domain-containing-protein	gnl\|CDD\|370773	pfam09991, DUF2232, Predicted membrane protein (DUF2232). This family of bacterial proteins are multi-pass membrane proteins with up to 10 (2 x 4/5) transmembrane regions. The exact function of this potential pore molecule is not known, but in many instances it is associated with ABC-transporter-like domains, implying that it is part of a secretion system that uses energy.	5.1751e-11
NZ_CP017414.1\|WP_172867703.1\|2676435_2677059_-\|30S-ribosomal-protein-S18	gnl\|CDD\|275385	cd00473, bS6, Bacterial ribosomal protein S6. bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.	8.10742e-23
NZ_CP017414.1\|WP_157765796.1\|2677211_2677733_-\|hypothetical-protein	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0.000813245
NZ_CP017414.1\|WP_014245262.1\|2673289_2674633_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0

>NZ_CP017414.1|WP_096910088.1|2670145_2671174_-|hypothetical-protein
MKSMNDWRTYSMKYLLIAMLFIFNSFGESPDVVWLYTRKNRTEAYLSFVRAFEGRISLFTNRELKGKPVGSFSSRDLELANETICKLREEHLEEVKIAPYSMDFHRDGKSLFCDYNIHKGKLTSGQLRIYFTENKGDVYGFKSSLVKGEDTYYFRLPGEVKAITDSVESEVIYKGKRLAVIRPSAKDVFEKFVLKDKSIVSYIDRLKKVIKQKNSELIFKEMVRCISDNKVKESKLTTERDFLYQFFPTSTKRKEMPSAYPDGVNYTSFQDYLNKREGKILNLFKIDTKDLEVYLKFKASKVYNVDLRLGLIDGASLKIRKQDDSCIYLSFFSPWPFDDEIW
>NZ_CP017414.1|WP_096910087.1|2669297_2670053_-|hypothetical-protein
MKKTLISFSIFILLITLYRCRDFIYYTRMWLTYEPKSFMGNMEPPFPNWFEVMWSLKGPDRNKNGIRDDVEIYINNEFKDLNESELIMIYNAAVLVQSSLRYRASEDFLEEYWAESNMITECLGKYSSSTGKFDKKFKELNTIEQAIENRTRNTLLRSNVSRLFLNKFHMWSYESGGLRGFHMQLNMWKYCGLDRKESDKIGIRILKKKFSMGRKSNHLSNLKQYEDKYGKGNRNLYEKYFTRKDINYLDK
>NZ_CP017414.1|WP_096910086.1|2668608_2669091_-|hypothetical-protein
MERIPEDVKVIDVYSVSSEFPRLSLSFDAKDSFLQFVPTDGWIKKRVIKGENWDTAVYHHNFGGVFFDYYRMKNLGAGGINDITLSEYFKNYPDVIFKSGDRVVRFRFNKVNYNNIFLPYYIKVKNYFKYGTINPPILEKNRSTCTSPRTNIFLYDFVDE
>NZ_CP017414.1|WP_157765795.1|2668082_2668415_-|hypothetical-protein
MKKLIWVFFVMTSFNAMAAKGSVVECENAHANGSRIKLEFLSGTDAKATVTTKESQSSHLLEVVSKSRDGIFFKTQKGNLLKLASVSDSIELSQTANAFDVNFETANCSI
>NZ_CP017414.1|WP_157765794.1|2667325_2668021_-|hypothetical-protein
MKIIIALSFLISMPIFAQKKAPFLNKLRCTNSVLGAVSSLGEPKEWKKNLDASVSSDFEGGGSVTIDVEKSKSTLTSNQNGLLLKLDFSEPDCKMKVLKISSSSGGFLDRDLDQLLKKEKRGVIYLWSPHMSLSVYELVEMKKYLSSLKIPVTILLDLNADIDFANKSLQKYDLPLEYLKRMNSRKLENFGATIHYPSTIFYKDGELVKRVPGFNGKKSLQDLIKRYLGEI
>NZ_CP017414.1|WP_096910083.1|2665868_2667326_-|hypothetical-protein
MKIAFVLLLLLSLNSMAQVDKNLCNLNEDKIIRRITPMYTPNYFFKTSPDGRYIYYIGGHKNWRLDTTNGEELLLPGSADPVPSIDGKIMTSINWRVPGQKNWSLNLMPMENWDISRGFFGKINYEKVTVDTNTERTYQSVGTLGGNKYRVLSYDERAASISLKDYTLTSNGSFSANRNDNQQKFPNMRLPMISKDGKEFASLDIETNQTVIYRINDDGTGAKEIERLDFPSGKVDFSNDRKKLVFHVTEKVSRSGPMSSEVNMPPTFDNRHEVRNVFVYDRETKSITPVTQNQRGNSYYPVFLEDDKVVYLDQTSGKLSFVIKEVPKVVPKSIEVARSCFEGDDFDRSLENLADLWKSVCTDWTGNNSGGSKVMMLNMPDELCRQIAKATGDREVSLMCDALKKSEIKRPRVSNTKDKFKKMVKVKCMICHQENIPFFDKEKVKSHKDEILKRINSNDPSYRMPLGGELTKEEKKEFTEYFNSL
>NZ_CP017414.1|WP_044557603.1|2664908_2665682_-|MotA/TolQ/ExbB-proton-channel-family-protein
MDIASIIGLVVATAAILGSILVGGDLGIFIDVPSTLVVGLGLIGVTFFKWPMEVIKNIVAFAMKGFFFSPSDPKDTIEEIGNLAETARRESVFALEKVPIDDPFLKKAMTLAADNRPPEVIASILQLEIDAMVERHKVGADVFQGMADDGPAMGMIGTLIGLVQMLQNLSDPSAIGPAMAVALLTTFYGAIIANVFCNPMKNKIAFRSSLEATKMNIIIAGTLGIVAGENPRLIKEKLNAFLPPAQRDGGNEEAQAE
>NZ_CP017414.1|WP_096910082.1|2664011_2664878_-|OmpA-family-protein
MAEEAENIGGGEESPQAEETKCPECPPGLPGWMATFSDLVTLLLTFFVLLLSFAKTETAKYEAALGSIRDAFGGNVLKHGEVIQRGKSPDDSPTMIDSQEPVRPFPIDFLTMEGILDKHEINRESDEELKTMKNDLYEFNLSDSVNIYEMPEGIKVKVKDKILFRYGSLRIANEQVSIEVYTRLVRLLTNKDWSVFVQGYSSRGEVSTEDGKNMDAFELSAARASAVTRSLIRRGVKPDQISTVFYGDIRPENIPGRSQTEIERASRRVDFILRKRDLNTEGHKVDAR
>NZ_CP017414.1|WP_096910081.1|2663146_2664022_-|RluA-family-pseudouridine-synthase
MQDSKFCTLYSYHSIEELLTKELSFSKSIVKRLLSKNFLKRGVNKGDELSLPLDLLNYQWVNPSYEGEPMMVIKEDDNFIAINKQHGIHGHPLNYSERNTVVNFLRNQFCLSAFLDESKRGESNLLYRIDRETSGLMIFAKKNSIYESIRQNFNHMVKEKVYLAVVEGEFNQEGVHSHYLESFGKKGAQMRAASSGEERVSIKTSLVEYNEQRGLSLIRIELGQGVRHQIRCQLSEIGFPIVGDTLYGGCESRRLFLHAYEYRIEVDDIQFSAKAEVTDLFLTLFNLNSGL
>NZ_CP017414.1|WP_044557602.1|2662690_2663185_+|hypothetical-protein
MASKLLTKYPILMVGLLLMALFLFQLRDKGIFQSRKESMTASSCKAVRVMLDKRIPSNWNSKCEGNNLALSINMMIEQSKYKSFENLRAIMYRELANDLILTAKNSPSDSLERTDIVRVRLNHDKLEINAITEGRFIVKLATIKSSQLIKEHLKATVQVKESKK
>NZ_CP017414.1|WP_044557608.1|2671647_2671866_-|hypothetical-protein
MTQQNLARTAELNSKSTSTEEMVSFSTLSQMTGFPVDFIKKELLLDEEPISMSQLRESMAIYLESTIDHVRG
>NZ_CP017414.1|WP_096910089.1|2672123_2673287_-|chorismate-binding-protein
MWSIFWMGDGFVKYSSPSFARVFYRHYSIDLLTGQRSDIKIDHFLERLESDHGSLEEIRQKRNYVVHLFYELGEILLDHSGPGADDPLAIEIQYKEKKPWSLIENIPSLELKAVGAVSSRDYKAAFDKGYEHLLRGDIYQFNLTFPFSYRWKKNHSAKEICSRLWREKESRSPYAHATYIPKLGKLYLSNSPECLFQGDLKGPQASLWTMPIKGTLPRGEDWRESFKKLKSSKKDQGELNMITDLLRNDLTRIDLQVGRVIKKCAPLVVPKIIHQYSLIETKLRESTSLLKIVKAMFPGGSVTGAPKKNVVKILSSLEKEKRGFYCGSTILIDRDLFAASINIRSGDFCMDDKMMRYHAGGGITLLSKCEEEFLEMHLKKDSFVRNL
>NZ_CP017414.1|WP_014245262.1|2673289_2674633_-|replicative-DNA-helicase
MENNIKQLPHDLLAEKSLLGCLIIDGNSFDEMSDLKLKGEDFYHPQYGVIYEAIADLNSASLPIDFVTVCSKLTEIGKLEAVGGQSSVMEIVEDQASAANIYHYAKVVKDKSGMREVIRSAERVASMGYDFGGKSEDFIQEVESTFFKLTNEAKSGKMQKLNSCLKLNLKELEDTSRVPGEINGLPTGYPKLDEMLLGMQPGQLIILAARPAMGKTALALNIAQNACATSGLPVAIFSLEMLSNELSMRLLSQKAKVDSKRIRQKNFLDTDLRSIGKAVQELSQFPIFINDSGDSTILDIQSQCRKIKTEQGLGLIIIDYLQLMNSHTKNPSREQQISEMSRGLKSMAKELGCPVIALSQLNRGVESRPNKRPMTSDLRESGAIEQDADIIMFVYRDEYYNQDTKEPGIAEVIVGKNRAGETGTAKLSWVGQYTSFENPAFNIENEH
>NZ_CP017414.1|WP_014245263.1|2674731_2675355_-|50S-ribosomal-protein-L9
MKVILTERVKTLGNVGEIVNVSQGYARNYLLPNRFAVLADESNTKQLNHQQKVLAKKMEEQKATAVASAKKVEGITLEFVRRVAGSGKLFGTVSNLEIAKELEAQGVEVEKRMIVVANPIKAIGNFDVTAKLFEGVEANFKVNVTLDPAQAEEMKKKQEDADRKKAAAAEAAALAKENGETEEATSEVKELTEEEKLKEEANKILRS
>NZ_CP017414.1|WP_096910090.1|2675356_2676415_-|DUF2232-domain-containing-protein
MTNHNDDNNYLKTSQGSEQKSKEKVFGQLTNGKLVFLAVISLLLSVAGPLIVFAPIPLCIAFLLYGKGKTFGLIAATIAVIVGASFLVSSLEGTRMMSLYFVVTSIVAFLTARVVWNKQNPVSALLKNGFSVFTVLALLFGLLVMLSGKTTVDMFTDTVVQVGDSLKASKGFDNFLAEGGEQAEAMKFIIDKPKEVAILVLRMTFAVTFVGTFFFLWISQFMLMRNSLIWRQFYDYPYKMKDLVRFKVPEQFVYGLILAMALIPLGSFVFESQLMETIGWNIVYSLGIFYFFQGFGIVSDALDTYGIFGFFRSIVVILSIFMGYQAVTILGIADIWIDFRKFLKKKNKMKEI
>NZ_CP017414.1|WP_172867703.1|2676435_2677059_-|30S-ribosomal-protein-S18
MIYELAIVAKTETTEEQRAALQAMVTEVVGANAGEVFLTDDWGNKHFAQATSKGVRTGHYLYFIYSGNGAVNLEIERRLKINESILKKMIVKVGETAEQGAEIAKKFKSPFSKKFNGSILDENDSDSDLEKDKKRFSRRKSCWFAANNITPDWKDPKTYAWLINEFGKINPGRVSGISRKAHRLADTAIKRARNMGVVSHITNSLAE
>NZ_CP017414.1|WP_157765796.1|2677211_2677733_-|hypothetical-protein
MEMVKDSIEKNIPIALAFAHSEDSLASESTAITHEHHSYVRKTVCMGVPEIVQECSDGTMVILLTGTLRGTIMEVLDEGTPYLVCEFTPKASIQELKAENILLLRRLKTKLEKWVGKMVKLECQKDHLKPCLTQPERVVGLYIELLVESPETKQLLLEMDDINEKIQYLIFNS
>NZ_CP017414.1|WP_096910092.1|2677953_2678619_+|response-regulator-transcription-factor
MNYDFDIYLLGLPMALVKLIGDSLESKFTLKVDAQDKYNLESEKKPTLIIYNQTIQRKVNEFRQRYSLEGIPTIAYIDSVNKSDEKKIRSLEDGADDVLDYEMSFEEKLVRINRLIQLYLKRNKMLICLNDFILDKNCQRGFFQKKNLNLSPIEFNILFALFENLKVSISKEKLTRLIWNSTQTSKLNSHITNTKKKLAQTPLEIIFKKEMGYSIKFKEVN
>NZ_CP017414.1|WP_014245268.1|2678615_2680196_-|Rne/Rng-family-ribonuclease
MGKQLIINQTLNECRAALVLNGEILDFLMERTTEGEDKVPQVGDIFKGRVLRVLPGMQSAFVDIGWEKAAFLYVDDAYIPTLQEQREMAEKTRKMIESQERVGEVIPDEFSTLNESVNMRFRPEHATIETFLKEGQEILVQVAKEPISTKGPRVTRQITLAGRHVVFMPFIEHTGVSRRIENEGERERLREILDTIRPEGKGVIARTVAEGQSYRTLKSDYNMLVKIWKDVQKKAEKSKPSTVCYRDLSFIQRLLRDITDEDVSEIIIDSKDNQKEVEKFTSKYLPSMKGKTVLYDDTTPIFEKFGVDMEIERGISNKVYLRSGGSLNIDQTEALVSIDVNTGKFVGRKNLEETILRTNMEAVKEIAYQLRLRNCGGIIIIDFIDMEKEEHRETVYNLLIEALKKDRSKTNVLPISGLGLVEMTRKRTRDTLTRVLCEPCPYCEGTGRVKSTLTVCYELIRELLKVLNKSTGSKVYIYAHPEVTARLCGDDLDLIENLEEGYGKSLQIRSENNYHIEQYEIFSQEY
>NZ_CP017414.1|WP_096910093.1|2680214_2681435_-|NupC/NupG-family-nucleoside-CNT-transporter
MERFISFFGLLLMLFAAYLLSTNKKKVCWRTVASGIGLQIFLGLIILKTSFGKGFFEYARTFFTGILAYTNEGSKFIFGSLTGVEKFGFIFFVQVLPTILFMSALMSILYHLGVMQVVIRFMAKIMVKVMGTSGGESLAAAANVFAGQTEAPLVIRPFISKMTKSELMALMTGGMATVAGGVLAAYVGFGVDAAHLLAASVMSAPAALVCAKLLVPETESSQTHGDLKLEIEKETTNLVDAAAHGASEGLKLALNVGAMLLAFIALIAMFNGILSFVGGWFNYPELSMELISGYLFAPVAWLLGVPWADCQIVGSLLGKKMILNEFVAYLDLTKAMSEGALSERAVIISTYALCGFANFSSIAIQVGGIGVLAPDRRKDLAELGIKSMIGGTLACLMTAAVAGMFL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017414_1	1.1\|565815\|22\|NZ_CP017414\|CRISPRCasFinder	565815-565836	22	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	56225-56246	2	0.909
NZ_CP017414_1	1.1\|565815\|22\|NZ_CP017414\|CRISPRCasFinder	565815-565836	22	NC_041917	Serratia phage BF, complete genome	56593-56614	2	0.909

1. spacer 1.1|565815|22|NZ_CP017414|CRISPRCasFinder matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 2, identity: 0.909

gtggtttcggtatgggtggtaa	CRISPR spacer
ttgttttcggtatgggtggtaa	Protospacer
 ** ******************

2. spacer 1.1|565815|22|NZ_CP017414|CRISPRCasFinder matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 2, identity: 0.909

gtggtttcggtatgggtggtaa	CRISPR spacer
ttgttttcggtatgggtggtaa	Protospacer
 ** ******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12055 : 21629

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157765576.1\|12055_13282_-	twitch domain-containing radical SAM protein	A0A1B1IX02	uncultured_Mediterranean_phage	5.8e-16	24.5
WP_096908204.1\|13363_13732_-	hypothetical protein	NA	NA	NA	NA
WP_096908205.1\|13935_15072_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.0e-43	32.8
WP_014242745.1\|15056_15713_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	36.7
WP_096908206.1\|15713_16913_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.0e-97	48.5
WP_096908207.1\|16921_17389_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-38	54.8
WP_096908208.1\|17388_18060_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_096908209.1\|18053_18824_-	RNA methyltransferase	NA	NA	NA	NA
WP_096908210.1\|18824_21629_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.5e-269	51.2

DBSCAN-SWA_2

391273 : 401264

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096908425.1\|391273_393187_+	asparagine synthase (glutamine-hydrolyzing)	R4TIC1	Phaeocystis_globosa_virus	3.6e-33	30.6
WP_096908426.1\|393209_394214_-	dTDP-glucose 4,6-dehydratase	H9NC62	Sphingomonas_phage	8.2e-77	43.9
WP_096908427.1\|394206_395064_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.5e-42	41.1
WP_096908428.1\|395057_395606_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.0e-36	50.3
WP_096908429.1\|395595_396474_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.2e-100	62.2
WP_096908430.1\|396667_397696_+	NAD-dependent epimerase	A0A1V0SAI6	Catovirus	9.4e-36	30.1
WP_157765616.1\|397782_399168_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_157765617.1\|399171_399876_-	glycosyltransferase	A0A0N7A8R9	Sulfolobus_monocaudavirus	4.9e-12	32.2
WP_096908433.1\|399974_401264_+	lipopolysaccharide biosynthesis protein RfbH	A0A0F7LAY0	uncultured_marine_virus	2.0e-35	27.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017414

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection