CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP017468	Staphylococcus nepalensis strain JS11 plasmid pSNJS1102, complete sequence	0 crisprs	NA	1
NZ_CP017466	Staphylococcus nepalensis strain JS11 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,cas3,DinG	9
NZ_CP017467	Staphylococcus nepalensis strain JS11 plasmid pSNJS1101, complete sequence	0 crisprs	csa3,Cas14u_CAS-V	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017466_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017466_1

1197098-1197242

Orphan

Consensus_repeat	Method
ACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017466_1

>merge|NZ_CP017466|1|1197098-1197242|CRISPRCasFinder
ACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTTAATTTAATATTCTTGCGGGAGTAGTTCAACTCTTAGAATACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTT

>NZ_CP017466|1|1|1197098-1197242|CRISPRCasFinder
ACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTT	AATTTAATATTCTTGCGGGAGTAGTTCAACTCTTAGAAT
ACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017466.1\|WP_096808978.1\|1188798_1189251_+\|peroxide-responsive-transcriptional-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
NZ_CP017466.1\|WP_096808974.1\|1187753_1188704_+\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
NZ_CP017466.1\|WP_096808969.1\|1184749_1185844_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP017466.1\|WP_096808982.1\|1199189_1200653_+\|ABC-transporter-substrate-binding-protein/permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP017466.1\|WP_096808965.1\|1182168_1182711_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP017466.1\|WP_096808996.1\|1204950_1206336_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP017466.1\|WP_096808984.1\|1200645_1201368_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP017466.1\|WP_096808962.1\|1179954_1180932_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP017466.1\|WP_096808963.1\|1181055_1182102_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP017466.1\|WP_096808972.1\|1187291_1187747_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
NZ_CP017466.1\|WP_096808960.1\|1177451_1178984_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NZ_CP017466.1\|WP_096808994.1\|1204326_1204740_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017466.1\|WP_096808990.1\|1203317_1203917_+\|glucosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223440
NZ_CP017466.1\|WP_096808980.1\|1197875_1198943_+\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP017466.1\|WP_096808986.1\|1201532_1202660_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP017466.1\|WP_096808970.1\|1185919_1187209_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
NZ_CP017466.1\|WP_096808998.1\|1206595_1207423_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP017466.1\|WP_096808967.1\|1182909_1184646_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP017466.1\|WP_096808992.1\|1203940_1204123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017466.1\|WP_096808988.1\|1202664_1203135_+\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|349967

Protein	Function_ID	Function_description	E-value
NZ_CP017466.1\|WP_096808978.1\|1188798_1189251_+\|peroxide-responsive-transcriptional-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.40797e-52
NZ_CP017466.1\|WP_096808974.1\|1187753_1188704_+\|hydroxyacid-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.94287e-136
NZ_CP017466.1\|WP_096808969.1\|1184749_1185844_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	4.08708e-66
NZ_CP017466.1\|WP_096808982.1\|1199189_1200653_+\|ABC-transporter-substrate-binding-protein/permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.32663e-98
NZ_CP017466.1\|WP_096808965.1\|1182168_1182711_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.28704e-125
NZ_CP017466.1\|WP_096808996.1\|1204950_1206336_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP017466.1\|WP_096808984.1\|1200645_1201368_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	7.84635e-151
NZ_CP017466.1\|WP_096808962.1\|1179954_1180932_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	5.17625e-38
NZ_CP017466.1\|WP_096808963.1\|1181055_1182102_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.57035e-137
NZ_CP017466.1\|WP_096808972.1\|1187291_1187747_+\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.57849e-61
NZ_CP017466.1\|WP_096808960.1\|1177451_1178984_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.01835e-51
NZ_CP017466.1\|WP_096808990.1\|1203317_1203917_+\|glucosamine-6-phosphate-isomerase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	2.84346e-08
NZ_CP017466.1\|WP_096808980.1\|1197875_1198943_+\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	2.66886e-95
NZ_CP017466.1\|WP_096808986.1\|1201532_1202660_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	4.32693e-177
NZ_CP017466.1\|WP_096808970.1\|1185919_1187209_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
NZ_CP017466.1\|WP_096808998.1\|1206595_1207423_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.4455e-74
NZ_CP017466.1\|WP_096808967.1\|1182909_1184646_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP017466.1\|WP_096808988.1\|1202664_1203135_+\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	5.57616e-82

>NZ_CP017466.1|WP_096808978.1|1188798_1189251_+|peroxide-responsive-transcriptional-repressor-PerR
MSAEMETVEHQLEDSIASLRDNGIRITPQRQAILKFLIASETHPTADEIYQALSPDFPNISVATIYNNLRVFKGIGIVKELPYGDASSRFDFNTHNHYHVICENCGKIVDFHYPQLHEVEQLAQHVTNFDVTHHRMEIYGLCKDCQDNEK
>NZ_CP017466.1|WP_096808974.1|1187753_1188704_+|hydroxyacid-dehydrogenase
MKAVSLKRLDGLEGDLVDTFPNVNFVFTSGISEINDNDKKDLDILFGYDSAIDQTFLEECPNLKWLAWYSTGVNKLPLEYIDNQNILLTNGKGVHAKQMSEFIIAFILDDYKYMSTSFINQKHKYYDSKLTGKRVSGQKVLFLGTGSIAQKTAKIANAMDVIVQGVNTSGHSVDGFSQVYAIDELTSALPEADIVVNTLPETKDTIHLLQRSHFEAMKDTALFINVGRGTIVDENIIANVLKDKLIRHAYLDVFENEPLNPDNQLYNLDNISITAHITGNGIENQEEVTDIFQRNLVYFLNNRELIENVVNPQAGY
>NZ_CP017466.1|WP_096808972.1|1187291_1187747_+|peroxiredoxin
MLKKGDQFPKFKLENQNGDIISNETLKGSKAVIYFYPRDNTPTCTTEACDFRDNLSYFNKLDTQVYGISGDTKKKHQNFSNKLNLNFDLLIDEDYQLSNEVGVYQLKKSFGKESMGIVRTTFVLDENGIIIDVIEKVKVKSQMEELKAILG
>NZ_CP017466.1|WP_096808970.1|1185919_1187209_-|glutamate-1-semialdehyde-2,1-aminomutase
MKFTESERLQNFSNEYILGGVNSPSRSYKAVGGGAPVMMQSGEGAYLYDVDGNKYIDYLQAYGPIITGHAHPHITKAIQDQAALGVLYGTPTELEIDFAKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTRRNKIIKFSGQYHGHSDLVLVAAGSGPSQLGSPDSAGVPQSVAQEVITVPYNDIDAYKEAINYWGDDIAAVLVEPIVGNFGMVKPKQGFLEQVNEITHNNGSLVIYDEVITAFRFHYGGAQDLYKVYPDLTAFGKIIGGGLPIGGYGGKQEIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQEGIYEHLNDLGQHLEEGLNELIQKHHITATVNRVYGALTLYFTNEVVTHYDQAENSDGEAFAKFFKLMLHQGINLAPSKFEAWFLTTEHTKKDIDQTLAAVDYAFSQMK
>NZ_CP017466.1|WP_096808969.1|1184749_1185844_-|aromatic-acid-exporter-family-protein
MKLGARILKTGIAIILALFIASLFPDEAGLKAIAAVSAVIAMQPSVFRSIKTISERAIGNLIGALLAVVMVTVFGNNPVIMGVTVILLIAILFRFNLEHVATLASITALIIMGTHTGNFYVSAFYRFVLVMVGVISSSAVNLLFLPPKFESKIYYNALNICSDIFVWFKLVLNDTSEYHHIKEDRGLISKRISKLEQTFEYYEEERPWTKKQMYAQNRKKILFKQVVRSTRQAYDVLKRMNRYQNDLHNLNNELLLQIKLEIDLLIAYHEQIFISLSKKARYDVSHFDSQIENPQKKDLMDAFQREIIKDPYQTTYSFANIMQIISSIEEYRYTLEHLDRLVISFFSYHQNDNEIEIEEEDFDL
>NZ_CP017466.1|WP_096808967.1|1182909_1184646_+|ABC-transporter-ATP-binding-protein
MIRRYLQFVRPYKWRIIATILVGILKFGIPMLIPLLIKYVIDNIINNGAITIEEKFTRLAIALGIAIFIFVIVRPPIEFLRQYLAQWTSNKILYDIRKKLYNHLQALSSRFYANNQAGQVISRVINDVEQTKDFILTGLMNIWLDCITIVIALSIMFVLDVKLTLAAIIIFPIYILTVYFFFGRLRNLTRKRSQALAEVQGFLHERVQGMSVIKSFAIEDNEAANFDKHNSNFLQRAFTHTRWNAYSFSAINTVTDLGPLIIIGSGAVLAINGSITVGTLAAFVGYLEQLFGPLRRLVSSFTTLTQSFASMDRVFQLMDEGYDIKNKKGALPLEIKEGRIEINDVSFKYNNEESTILNHINLDIEEGETVAFVGMSGGGKSTLINLIPRFYDVTDGEIKIDGTNIKSYLTGSLRHQIGLVQQDNILFSDTIKENILLGRPNATDQEVITAAKMANAHDFIMELSEGYDTEVGERGVKLSGGQKQRISIARIFLNNPPIIILDEATSALDLESESIIQEALNILSENRTTLIVAHRLSTITHADKIVVIENGEIVESGTHQELLAKNGTYEHLYSIQNL
>NZ_CP017466.1|WP_096808965.1|1182168_1182711_+|DUF402-domain-containing-protein
MVKESIPKEGQTIKIQSYKHDGNIHRVWSETTILKGTDHVVIGGNDHTLVTESDNRTWITREPAIVYFHSEYWFNVICMFREDGVYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMKQMNYSSDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWRERFKKIRDY
>NZ_CP017466.1|WP_096808963.1|1181055_1182102_+|A/G-specific-adenine-glycosylase
MLNKSQFKNNLVTWFEENQRQMPWRETTNPYYIWLSEVMLQQTQVKTVIDYYHKFISRFPTIYELSKAHEDEVLKYWEGLGYYSRARNFHTAIKDVYESYNGEVPDDPQLFGKLKGVGPYTQAAVMSIAFNKPLATVDGNVFRVWSRLNNDDRDIKLQSTRKAFENELAPYVQEKAGTFNQAMMELGALICTPKNALCLFCPVQAHCEAFEQGTVEQLPVKTTQVKKKHIKQNVYIIKNTDGAYLIEKRTQRLLNNMWEFPMFEATGDESVNAQLSTNIQFQHKPVYSLKHQFTHITWDINVYLAKTQVNPQEVTLSENMVWMKLEDRENYNFPVSMSKIYKFLITNS
>NZ_CP017466.1|WP_096808962.1|1179954_1180932_-|metal-dependent-hydrolase
MDTGTHIVMGIGLTALATQDPAMTGSFAATATTLIIGSLIPDSDTVLKLKDNATYISNHRGITHSIPFTILWPLLITLFIFTFFKNIDTGHIWLWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFSLLCIGIILWIIGLHPYISFFPIVGILVVYYIIRFRMQAIIKQQALKQIKQEHNPVKVFVAPTMRFMEWRVAIQTEAYDYVGRSYGRNIVFSDKSKRHSFPSNDLMKYVKDDKNIKTFLNFSSIYRWQTRKLDDDTTEIRLIDLRYLKNGHYSFVAIAHLDECMNIDHSYIGWVFSEDKLQKKLFAK
>NZ_CP017466.1|WP_096808960.1|1177451_1178984_+|ABC-transporter-ATP-binding-protein
MGSSIILKLLNVTHYYRDKKSKKWYQPFGYDAENIELNNINLHIYQGESLGIIGEPGSSKSLIGRILSGEVKPDKGKVIRKMDVFYADIDDKYLQDISVVDYVSHAVTLFPYKTNTHKVEQVLKYAHIEEQSDTPICELSDEAYARLLFTLSRTSKANIIIFNKILQNLTDEYFEKAIELSNEYINNNLTIVMIDDNVERITKASNYIAWISHGQFRMEGSIKQVIPLFKDHERDRNSLKTDDEKKNFDLDWKENRTRTPELTYNFKRVDRYNHVKPPVVLVRIWIWVSIFILGMVLTALLMFNDIGKIKIGQNEDQASIQNQSKNPYEEKLAYGIVLDDSIKLENMESDKDLKATKYAFITITGENSKSYKVTVDNQSYKVSKKDIRYFDPAGLFEEHSGKSLAPFMSNNYSNYYEFYNSHLHKKHSTVTDSLVPEAGGNNRFIVPITQQPITMIFNDQNKLAGFTIPMKDKEKLKNKFNIDNNFWITKSDEGYFMADFKNNKWIYIEL
>NZ_CP017466.1|WP_096808980.1|1197875_1198943_+|PTS-transporter-subunit-IIC
MVQSKTIKPTGKAFIGNILQAVGAGVVIALIPNALLGELLKFFKEGNQLLEMIYQLVVLIQSFMAFIIGVLAAHQFKFNGAGATMIGVSAMLGSGAVKMTTEGFTLNGIGDIINTILVVIIACSLYLLLQNKLGSLEMILLPVIIPVISGVIGLFTLDYVSNVTKGIGHIVSAFTEFNPLIMSILICVTYALLMVTPISVVAIATAISLSGLGSGAANMGIVAACVTFLFGSIRVNGAGVNLVLIIGAAKMMIPVYFKHLIIAIPLAINGVIGGFIAYFIGIKGTPMSAGFGYTGLVGPINAFNRMDGDPTMNIILLVFGYFIIPFVAAFFVHEICKKMIRKYTDEIYKFEILKQ
>NZ_CP017466.1|WP_096808982.1|1199189_1200653_+|ABC-transporter-substrate-binding-protein/permease
MKQLLKVLIIFSLLISTLIIYINPEINAEANDQWEKIKERGELRVGLSADYAPYEFEHNVNGETKYAGIDIDIAKKIAKDNNLKLKIVNMQFDSLLGAIKTGKIDIIISGMTPTPERLKEVDFSNAYMTVDQKMIIKKSEADRFKTISDFANKKIGVQKQTQQEKIAQNEIENAQIQSLTRVPEVIMSLKSGKVNGMVIEGPVAEACLKQNKDLTFADDVKFEEGRKNTAIALPKNSPVLMDKLNSSIKDVKDKNLLDDYKDSAAEAMQKDEGNFFTKYGNFFLKGIKNTILISIVGVVLGAVFGAFIALLKLSKIKILRWISSAYIEFLRGTPLLVQVFLVYFGTTAVLGLDISALICGMIALVINCSAYIAEIIRAGINAVDKGQTEAARSLGLTYGQTMKSVILPQAVKNILPALGNEFVTVIKESSIVSVIGVSEIMFNAQVVQGASFDPFTPLIVAAVLYFILTFTLSRVMNFFEGRLKVSD
>NZ_CP017466.1|WP_096808984.1|1200645_1201368_+|amino-acid-ABC-transporter-ATP-binding-protein
MINIKNLYKAFGKNEVLKGIDLKVEKGEVVAIIGPSGSGKSTLLRCMNLLETPSSGEVIFKDNHLTNEKTKLETLRQQMGMVFQNFNLFPHKKVIDNIMLAPSLLKKGSQSKLRKEANILLKKVGLEDKADAYPSQLSGGQKQRVAIARALAMNPEVLLFDEPTSALDPEVVGDVLKVMKDLAKEGMTMAVVTHEMNFAKDVSDKVVFMADGVIVEAGKPQDIFEQPKHDRTKNFLARVL
>NZ_CP017466.1|WP_096808986.1|1201532_1202660_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MNIDQLKQDVIDYAHSIGIDSIGFTTADPFDELKQKLVDYHAKGYASGFEESDIGLRTEPKLSLPTARSIIAIAVGYPNKLKGAPRSVRGDRRGMFARASWGQDYHTIMRKRLDQLAEYLEARVPNVEIKSMVDTGVLSDRAVAERAGLGYVGRNGFVINPDLGTWTYLGEMLVSVPFPPDDPLIDSCGDCTICVDRCPTGALVGDGQLNSQKCISFLTQTKGYLADEYRYKIGNRLYGCDTCQQVCPRNRGINTQHDDIVLEPEVLKPRLVPLLQMSNKEFKNTYGHLAGAWRGKKPIQRNAILALAHFKEETAIPELQEVALNDPRPMIRGTAYWAIGQIQGEVARPFIDAHYDNELEEVQHEMLKGLDMRRE
>NZ_CP017466.1|WP_096808988.1|1202664_1203135_+|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MTNHIVLFQPQIPGNTGSIARTCAGTYTHLHLIKPLGFSTDDKMLKRAGLDYWNSVNINYYENIEEFFATTNGNYYLLTKFGKKTYSDFDFTNEAQDHYFIFGRETTGLPDWVKDKYQDTALRIPMNDNIRSLNLSNTASLLIYEALRQQNFPSLY
>NZ_CP017466.1|WP_096808990.1|1203317_1203917_+|glucosamine-6-phosphate-isomerase
MAMNFKVLENERIVAEYAADILRKQFNNNPTTIAGVHLSNDNAPVLDELKKNIDNNAVDFSQINILDYDSNKSYFEALGVPEGQIYGISYGEDTESFISDKIKTKENKGKLITQILSIDTNSRLNVSINHGLFSAREVILVITGSEKKNIVHKLYEENGKTSFEPADLKAHRMVNVILDEAAAEGLPEDVRHYFTARFA
>NZ_CP017466.1|WP_096808992.1|1203940_1204123_+|hypothetical-protein
MRNDSTKNQLNHDTEVENEMVDGFEDVVELGKEMEQISEENDEDKLDKAHDASVRSDLDD
>NZ_CP017466.1|WP_096808994.1|1204326_1204740_+|hypothetical-protein
MLSNYWKYLMISAIIVNLISIKGFPMAIGAIYLPILFKIIQLQINLSRGLVDKVNASTFVKSNQTGIIISVLCCVVVTVLLFKPLGDFYNSLTGFLGFLITISPVTMVIGTILLILTAIGIIQAAKIKFKNINITKE
>NZ_CP017466.1|WP_096808996.1|1204950_1206336_+|class-II-fumarate-hydratase
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRGAALANHELGKLSDAKKDAITYACDRILNKELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANEYLKEQGSDESIHPNDDVNKSQSSNDTFPTAMHVALYNEIEKKLEPALKILRNTFKEKEEKFNDVIKIGRTHLQDATPIRLGQEISGWRYMLDKCETLLNESKAHILNLAIGGTAVGTGINAHPDFGDKVAKFISKNTGYPFVSSENKFHALTAHDEVVQLHGSLKALATDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTAVGIGSSQGNFELNVYKPVILHNTLQSIYLLADGMQTFNDNCAIGIEPIEANIDNYLNQSLMLVTALNPHIGYEKAASIAKKAHREGLTLKESAIQSGYLTEAQFDEWIKPEDMVEPK
>NZ_CP017466.1|WP_096808998.1|1206595_1207423_-|RluA-family-pseudouridine-synthase
MKFQIPEKYNQLTLKEIFQQLQLPKKDLHNLNMSKDITINGLEAKLMSQVKTGDDIYIPTPDEKSNYLPSYRFAQIYYEDNDLAIVMKPKGVKTHPNDLKESNTLMNHVIYTIKSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEENQIDRIYKAHVHSLLPIKSQTIDMPIGKDKFHSNKRRVSSTGQTAITHILSSKMIKENVCEVDLKLDTGRTHQIRVHLAEMGHPVIGDPLYGDSTLRQLQLNSYKIEFIHPLTQKMISVSLDDDI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP017466_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017466_2

1263147-1263230

Orphan

Consensus_repeat	Method
TTGTGAAATAAATCACAATAAACGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017466_2

>merge|NZ_CP017466|2|1263147-1263230|CRISPRCasFinder
TTGTGAAATAAATCACAATAAACGATTGCTCTTTAGCGAAGAAAGTGTTATATTTAAATTGTGAAATAAATCACAATAAGCGAT

>NZ_CP017466|2|2|1263147-1263230|CRISPRCasFinder
TTGTGAAATAAATCACAATAAACGAT	TGCTCTTTAGCGAAGAAAGTGTTATATTTAAA
TTGTGAAATAAATCACAATAAGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017466.1\|WP_096809086.1\|1260118_1260577_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP017466.1\|WP_096809110.1\|1274588_1275290_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP017466.1\|WP_096809082.1\|1258282_1258915_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP017466.1\|WP_096809090.1\|1262103_1262928_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP017466.1\|WP_096809080.1\|1257232_1258276_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP017466.1\|WP_096809074.1\|1252216_1252441_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017466.1\|WP_096809088.1\|1260833_1261835_-\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|223580
NZ_CP017466.1\|WP_096809094.1\|1264367_1264769_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP017466.1\|WP_096809072.1\|1251520_1251994_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP017466.1\|WP_096809105.1\|1271565_1272825_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP017466.1\|WP_096809092.1\|1263261_1264218_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_CP017466.1\|WP_096809084.1\|1258925_1260107_+\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP017466.1\|WP_096809097.1\|1265125_1265686_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744
NZ_CP017466.1\|WP_096809078.1\|1255068_1256550_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|226906
NZ_CP017466.1\|WP_096809098.1\|1265682_1266636_-\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP017466.1\|WP_096809107.1\|1272954_1274592_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP017466.1\|WP_096809102.1\|1268302_1270717_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP017466.1\|WP_096809103.1\|1270738_1271050_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP017466.1\|WP_096809100.1\|1266745_1267915_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP017466.1\|WP_096809076.1\|1252604_1253459_+\|autolysin	unknown	unknown	gnl\|CDD\|226656

Protein	Function_ID	Function_description	E-value
NZ_CP017466.1\|WP_096809086.1\|1260118_1260577_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	8.03504e-87
NZ_CP017466.1\|WP_096809110.1\|1274588_1275290_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.12266e-87
NZ_CP017466.1\|WP_096809082.1\|1258282_1258915_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	2.03674e-91
NZ_CP017466.1\|WP_096809100.1\|1266745_1267915_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.19869e-82
NZ_CP017466.1\|WP_096809090.1\|1262103_1262928_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.4378e-57
NZ_CP017466.1\|WP_096809080.1\|1257232_1258276_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.08991e-93
NZ_CP017466.1\|WP_096809103.1\|1270738_1271050_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	3.304e-21
NZ_CP017466.1\|WP_096809088.1\|1260833_1261835_-\|proline-dehydrogenase	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	2.91641e-65
NZ_CP017466.1\|WP_096809097.1\|1265125_1265686_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.88223e-67
NZ_CP017466.1\|WP_096809094.1\|1264367_1264769_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.99217e-13
NZ_CP017466.1\|WP_096809105.1\|1271565_1272825_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP017466.1\|WP_096809092.1\|1263261_1264218_+\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	5.33588e-177
NZ_CP017466.1\|WP_096809084.1\|1258925_1260107_+\|GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP017466.1\|WP_096809078.1\|1255068_1256550_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	2.06877e-78
NZ_CP017466.1\|WP_096809098.1\|1265682_1266636_-\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
NZ_CP017466.1\|WP_096809107.1\|1272954_1274592_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.49237e-121
NZ_CP017466.1\|WP_096809102.1\|1268302_1270717_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP017466.1\|WP_096809072.1\|1251520_1251994_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.63475e-11
NZ_CP017466.1\|WP_096809076.1\|1252604_1253459_+\|autolysin	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	3.12416e-104

>NZ_CP017466.1|WP_096809090.1|1262103_1262928_+|alpha/beta-hydrolase
MWKWETENEAKGVIVIAHNMLEHTGRYAYVITMLRRNGHHVIMGDLPGQGQTTRSNKGQIENFEVYHEHVLEWIRIANEYKLPTYFLGVGLGGLIILNLLEKVEVPIEGLMLISPLLEFKKNNKTRKDKILSNVGKLTKDTRFKVGITVEDLTRNDEVIEEAKEDQLMLQKVTYHWYKQIIEIMKETVTHLKDIKPLPVLLMYGLEDKVSDIPTMHLVKDNIETEELYFKAWKGLYHEIHNEPERDEVMRYILAFLNNSTSNIGFIVHDEHELS
>NZ_CP017466.1|WP_096809088.1|1260833_1261835_-|proline-dehydrogenase
MPIVKNFFIGLSNNPFLNKTAKEIGPMFGAKKVVAGNTITDLVDTIERLNNKGITVTVDCLGEFVLNEGEAIQAKDQILEVMYAIYNHSLDGHMSIKLSQLGSEFDIDLAYRNLREILLKANEFGNMHINIDTEKYDSLFDITQVLDRLKGEFKNVGTVIQAYLYKADALIDKYPELRLRMVKGAYKENENIAYQTKEDIDENYIRLIKKRLLNANNVTSIATHDDKIITHIKQFIKDNNIEKDKYEFQMLYGFRSDLAGLLAREGNHFCIYVPYGDDWFSYFMRRLAERPQNLNLMFLELMKPEILKKTGFVASLLTAIGVSSALIYKVLKK
>NZ_CP017466.1|WP_096809086.1|1260118_1260577_+|6,7-dimethyl-8-ribityllumazine-synthase
MNFEGKLIGSNLKVAIVVSRFNDFITNRLLDGAKDTLIRHEVSAGNIDVAYVPGAFEIPLVAKKLAQKGEYDAVITLGCVIRGSTSHYDYVCNEVAKGVSKANDVTDTPVIFGILTTENIEQAVERAGTKAGNKGSEAAVSAIEMANLLSEI
>NZ_CP017466.1|WP_096809084.1|1258925_1260107_+|GTP-cyclohydrolase-II
MQLDSIEKALKALKNGESIIVVDDENRENEGDLVAITEWMYENTVNFMAKYGRGLICAPISKKIAQDLELNPMVNHNSDIYGTQFTVSIDHIDTTTGISADERMLTAKALIDEQTKANDFNRPGHLFPLIAQDNGVLARRGHTEASVDLALLTGAKPAALICEIMNEDGSMAKGDDLEAFKNKHQLVMISIEDLENYRKNTDAPLEAKAKVQLPTDYGNFDMYGFSTQNNEEEIVAIVSGEIKETENVRIHSACLTGDIFHSQRCDCGEQLAASMEYISENGGIILYLPQEGRGIGLINKLKAYELIEQGYDTVSANIALGFEEDLRDYQNAAKILKYLGVKRVNLLSNNPKKFGSLENYGIDIAKRIDLIVPTNKYNQDYMKTKKEKMGHLI
>NZ_CP017466.1|WP_096809082.1|1258282_1258915_+|riboflavin-synthase
MFTGIVEEIGTIKKMTTQQSIVNLTIDCQTILSDMHIGDSISVNGVCLTVVCFDNQTFSVQVIKGTENKTYLNRLNQSDEVNLERAMSGQGRFGGHFVLGHTDEVAKITRIQNSDNSKIVTIKPSKSIINQMVQQGSITIDGVSLTVFQLKESEFDIHLIPETRKSTILNQKRVGDPVHIETDMLFKYVEKIVGNNDSGLSSEKLKSFGF
>NZ_CP017466.1|WP_096809080.1|1257232_1258276_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSQYLNYAIQLAKMVDGQTGINPPVGAVVVNQGRIVGIGAHLQKGDKHAEVQALDMANETAAGGTIYISLEPCSHYGSTPPCVNKIIDFGIKQVVYAVKDTTLTSRGDEILQHAGVKVEFRHKPEAEALYKDFFITKRQGIPEVTVKVSCSLDGKQATDKGESKWITNKSVKNDVFMLRHKHDAVITGTGTLNADNPQYTTRIEEGKHPIRIILSKSGRIDFDLDMFNQSNVPIWIYTEQEKLKSDIEHVEVIHCSNCSLENILKDLYQKGIGRVLVEAGPTITSEFLQSNYTNELILYYAPKMIGGSGDYQFFKTENVFNLSEAPQFEIVNSQVLEQNIKLELRKK
>NZ_CP017466.1|WP_096809078.1|1255068_1256550_+|pyridine-nucleotide-disulfide-oxidoreductase
MRIAIIGMGTAGVSLLKELVKYDEFDQMKVDVYDNPKNMGQGIPFQNDSDQLLINLPAKQMSLNLKNEREFYEWYQQQSIFKFSNPEYLPRFIFGHYMKDYLETYHKQYKNIQMIKKEVLEVFIDADIGETNIKYVVCTSEKPDCQQQYDIVFLTVGTLSYHDPYQLKGTPGYIQTPYPTYDTLNEVDSTDRIAIIGTGLASLDVIRFVTAHHPNLPISVTSRKGHLPSVRGDMPEIQFKYVTPENFNKIKKENLGNVPLEDALTLFRKDCTYYDIPVEKLVHRRKGDPIADLTYDLEHKEILGKFQSILELAKENLNWIWNSFSRDDQKTFLRNYQSILKENSNPMPPRTARLIINHIQNGQIEIKKGLEDVKHDGQHFWFKYEDDFKAIDKFDVVINATGSKSHLSELDNDDQLILNLENRQVVQAHPLGGIQIIPETNQIISPRYGTLKNMFALGQLTNGINQSRNGVTMIVKQAVSVVENLLNRDQNKC
>NZ_CP017466.1|WP_096809076.1|1252604_1253459_+|autolysin
MTKHKKGSILSVIGLLIVLVVAAVIVFSMISDQIFFKEVNQQEKVEQLNITLDKAAKKQIDNYTSQQVSSKNNDTWRDASSTEIKAAMNSSNFIESDTQKYQFLELDKYQGIDENRIKRMLIDNPILLEHSDDFIKAAKEKHVNEVYLISHAILETGSAKSELSSGVEIDGKKYYNFFGVGALDEDPVKTGAEYAKKHGWDTPEKAISGGANFIHGHFLSNKDQNTLYSMRWNPKKPGEHQYATDIKWAESNASLMADFYKDMKTEGKYYKYFVYKDDKKHQDT
>NZ_CP017466.1|WP_096809074.1|1252216_1252441_+|hypothetical-protein
MDYAHLNLEHFFARHNDLDTIKDKSDFVMINNLTKEMMYRDGEIEGTIDLNRYYYKNRSQAVSFIIMEYNKSQE
>NZ_CP017466.1|WP_096809072.1|1251520_1251994_-|sigma-70-family-RNA-polymerase-sigma-factor
MPFEQLYFQFKHIIFILLNKYRIKYNREEYTQLLTIKMWELTQNYLPHHTYSLGQFLYNRLNYYLIDLFRCQNQKTNILYLTEQIDEQTNNTDITNNHLMYQHFLQQLTEKERQWLILKLSGYKQSELACMLNCSISTVKNYRKKVQKKYYKFYSPK
>NZ_CP017466.1|WP_096809092.1|1263261_1264218_+|L-lactate-dehydrogenase
MKYSKGNKVVLIGDGAVGSSYAFALVSQGIADELVIIDLDETKVHGDVADLNHSAPYGGSPIKIKAGSYKDCSNADLIVITAGAAQKPGETRLDLVEKNTRIFKEIVSTIMQTGFNGIFLIATNPVDVLSYVTQKVSGLPKAQVIGSGTILDTARFKYELAREFNVSPWSVDAQIIGEHGDSELAVWSQANIAGQSLYDILKDNPDKQHRIDEIFINTRDAAYDIIKAKGATYYGIAMGLIRITQAILKNQNVVLPVSSYLNGEYGQNDVYIGVPTLINRNGAVKVYETQLNSSESKLFENSAIILKEMQNKINQLIA
>NZ_CP017466.1|WP_096809094.1|1264367_1264769_+|MarR-family-transcriptional-regulator
MGKTITDMVDSVLRLEHVLNDIDDIFEKVQKQYKMSKEEILILLTLWQEGSMTLKEMDDFVQIKSYKRTRTYNDLVEKEWIIKERPVNDERTVIIHFNEDLEAQREALLDYFKEEIDEKSSSIQSSLKSILDL
>NZ_CP017466.1|WP_096809097.1|1265125_1265686_-|methyltransferase-domain-containing-protein
MKIERILPFSKTLIQQHVSADSIVIDATCGNGNDTEFLAQQVPDGKVYGFDIQDIAIQNTKTKTKTFRHVHLIHDSHANIKQYIPREERGHIDAAIFNLGYLPKGDKSIVTNPNSTLAAINSIFDILAPEGIIVLVIYHGHEEGKTERDALLNYLQHFDQNKAHILQYQFINQQNHPPFICAIEKR
>NZ_CP017466.1|WP_096809098.1|1265682_1266636_-|TIGR01212-family-radical-SAM-protein
MGQFFPYAFENKRYHTWNYHLKNKFGQKIFKVAIDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRVDPIDVQFQQIKDRMHEKWHEGQYIAYFQAFTNTHAPVEVLREKYETALKEPGVVGLSIGTRPDCLPDDVVEYLAELNERTYLWVELGLQTVHQKTSDLINRAHDMETYYEGVAKLRKHNINVCTHIINGLPEEDYDMMMETAKEVAQMDVQGIKIHLLHLLKGTPMVKQYEKGMLEFMSQDDYTNLVCDQLEILPKEMIVHRITGDGPIDLMVGPMWSVNKWEVLNEIDDELARRNSYQGKNYESIIKS
>NZ_CP017466.1|WP_096809100.1|1266745_1267915_+|MFS-transporter
MNMPKSVWWLVIGMALNITGSSFLWPLNTIYMNEVLDKSLTMAGLVLMINSFGMVIGNLLGGNLFDKLGGYPTIMIGTVICLSSTTLLNFFHGWPWYAVWLVCLGFGGGMIIPAIYALAGAIWPKGGRQTFNAIYLAQNLGVAIGAASGGFVAELSFNYIFIANLLMYIAFAIVAVSQFNIKLDVKVKSNDAMSLLSKAYRPQFIALSLICVMFSICWIAYIQWESTIASFTQVLNISMSQYSLLWTVNGIMILVAQPLIIPIIRLLKGNLKHQMYVGIGIFIISFFVTSFAEQFSVFMVGMIILTLGEMFVWPAVPTIANQLAPKGKEGSFQGYVNSAATVGKAFGPLIGGVVVDMFNMQVMFLSMISLLAIALIFLTFYDRQLPKDI
>NZ_CP017466.1|WP_096809102.1|1268302_1270717_+|leucine--tRNA-ligase
MNYNHNEIEKKWQDYWEEYKTFKTEDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKQNIETFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRRPMKQWVLRITEYADRLLEDLEDLDWPESLKDMQRNWIGRSEGASVSFNVEDSNDQIEVFTTRPDTIYGATFLVLSPEHQLVNQITTSENQESVEKYQQEAAMKSDLERTGLAKEKSGVFTGAYAINPLSGEKTPIWIADYVLSSYGTGAVMAVPSGDQRDYEFAKAFDLPITEVIEGGDLSEAAYVGDGPHVNSGELNGLYNKEAIEKAIELLERNNAGTRKINYKLRDWLFSRQRYWGEPIPVIHWEDGTMSTVPEDELPLLLPETDEIKPSGTGESPLANIDDFVNVIDEETGMRGRRETNTMPQWAGSCWYYLRFIDPDNEQMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIIKSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLLVTEDGLISDKVVNTNNKTLDKSYHQTVKKVSEDFDTLNFNTAISQLMVFINDCYKVDEIYKPYIEGFIKMLAPIAPHIGEELWSRLGHEETITYQPWPTFDESLLVDDEVEIVVQVNGKVRAKIDVPKDVSKEEMEEIALDNENIKDEIEGKDIKKVIAVPQKLVNIVAK
>NZ_CP017466.1|WP_096809103.1|1270738_1271050_+|rhodanese-like-domain-containing-protein
METISVDELKSKILNSNPIQIIDVRTDEETAMGVIPEAETIPMDQIPDNLNHFNSNDTYYIICKAGGRSAQVVQYLERNGVHAVNVEGGMDAWGDEALDIRSI
>NZ_CP017466.1|WP_096809105.1|1271565_1272825_-|NAD(P)/FAD-dependent-oxidoreductase
MYQTIIIGGGPSGLMAAAAASQNSNKVLLIEKKKGLGRKLKISGGGRCNVTNRLPYEEIIKNIPGNGKFLYSPFSVFDNESIIHFFESRGVSLKEEDHGRMFPVSNKAQDVVDALIHTIEKNNVTVKQETVVHGIEHTQKQTFKITTDNQETIESHSLVIATGGTSVPKTGSTGDGYKFAKQLGHTITELFPTEVPITSPEPFIKDRRLKGLSLKNVALSVLKKNEKKRITHQMDMIFTHFGVSGPAALRCSQFVYKEQKNQKQQNIKMQIDVFPDLSQAQVEAKIRKLLKDTPDKYVKNSLHGLIEERYLLYMLELANISEELTAHHISNEQFNKLVNLFKAFTFTVNGTLSIEKAFVTGGGVSLKEIEPKTMMSKHVPGLFMCGELLDIHGYTGGYNITSALVTGHISGTNASKFQL
>NZ_CP017466.1|WP_096809107.1|1272954_1274592_+|polysaccharide-biosynthesis-protein
MSESKELVRGTFLITLSILITKVLGVLYIIPFYAIIGGEEKLAPFNYAYTPYNIAIAVATAGVPLAASKYVSKYNALGAYKVSEKLYKSSFIVMTITGFIGFFILYLLAPTIATITLANKSGAKGGWSVEDITWIIRIISMVVIFIPLLATWRGVFQGYKSMGPTAVSEVIEQIARILFILIGSYLVLNVFNGSVLQANGIATFAAAIGAVAGIFTLWYYWKKRKPNIEKMVATDVSGINVSYGKMYKEIISYSIPFVIVSLNFPLFNLVDQFTHNGALDLAGVPSRLHDYFFTILNMTTNKIVMIPTSLSAGFAVSLIPFITKTYESGELSEMHRQIRTSLGVLMYITVPASLGIMALALPLYTVFYSYNIDGSQLLFYYAPVAILIGLLSVTASMLQGIDKQKLTVFVILVAVVLKVVLNTPLIMAFHTAGAILSTAIALLFAVLCNFYILKKYANFDFSETWLHFCKIFLYGLIMMVAVELSSFLLQMFISPETKFGALSILIISVIIGMLVYGGITMKTKLADQFLGEIPNKVRRKLGIIK
>NZ_CP017466.1|WP_096809110.1|1274588_1275290_+|rRNA-pseudouridine-synthase
MRIDKFLANMGVGTRTEVKQLLKSGSVFINEQKEKSPKKQIDPNNDIIKINNEIIQYIDKVYLMLNKPKGYISATADNQHQTVIELVKSYQFLEIFPVGRLDKDTEGLLLITNDGAFNHELMSPTKHVSKTYEVISEKNITNNDINSFKMGIELNEGLAMPATLVKSDEPYKSFVTIYEGRYHQVKRMFHAIDNEVLALKRVSIGELKLDESLGPGEYRHLTQQDFKQLGLNL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1236154 : 1251994

Staphylococcus_phage(92.31%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096809045.1\|1236154_1237543_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.1e-167	60.1
WP_096809047.1\|1237556_1238561_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.3e-87	50.6
WP_096809049.1\|1238557_1238794_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.0e-30	73.5
WP_096809051.1\|1238856_1239339_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.6e-44	55.6
WP_096811205.1\|1239346_1240114_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.3e-95	68.2
WP_096809053.1\|1242094_1243684_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	4.7e-260	81.4
WP_096809055.1\|1244063_1245260_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.1e-192	85.1
WP_096809057.1\|1245355_1246264_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.2e-88	76.1
WP_096809059.1\|1246559_1247396_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.3e-112	70.4
WP_096809060.1\|1247476_1247833_-	CrcB family protein	NA	NA	NA	NA
WP_096809062.1\|1247829_1248195_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.4e-34	58.7
WP_096809063.1\|1248255_1248561_-	hypothetical protein	NA	NA	NA	NA
WP_096809065.1\|1248848_1249562_+	transaldolase	E3SKN5	Synechococcus_phage	4.2e-19	34.4
WP_096809067.1\|1249858_1250491_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_096809068.1\|1250625_1251075_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	6.3e-21	46.1
WP_096809071.1\|1251082_1251505_-	hypothetical protein	NA	NA	NA	NA
WP_096809072.1\|1251520_1251994_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	7.9e-22	43.3

DBSCAN-SWA_2

1255068 : 1261835

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096809078.1\|1255068_1256550_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.5e-13	67.3
WP_096809080.1\|1257232_1258276_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.2e-128	62.7
WP_096809082.1\|1258282_1258915_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.0e-68	61.0
WP_096809084.1\|1258925_1260107_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-166	71.8
WP_096809086.1\|1260118_1260577_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-57	76.3
WP_096809088.1\|1260833_1261835_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.4e-123	65.8

DBSCAN-SWA_3

1265125 : 1272825

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096809097.1\|1265125_1265686_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-71	68.1
WP_096809098.1\|1265682_1266636_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	8.6e-68	84.7
WP_096809100.1\|1266745_1267915_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.1e-165	76.9
WP_096809102.1\|1268302_1270717_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	86.2
WP_096809103.1\|1270738_1271050_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	3.7e-36	68.9
WP_096809105.1\|1271565_1272825_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	4.2e-38	74.0

DBSCAN-SWA_4

1401717 : 1410822

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096809312.1\|1401717_1402719_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	5.8e-06	29.9
WP_096809314.1\|1402721_1403747_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_096809316.1\|1403767_1404907_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	7.1e-85	44.7
WP_019468514.1\|1404925_1405186_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.3e-06	44.1
WP_096809318.1\|1405504_1407781_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.5e-29	32.9
WP_096809320.1\|1408011_1410288_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.4e-69	29.0
WP_096809322.1\|1410303_1410822_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-30	46.9

DBSCAN-SWA_5

1876440 : 1934379

Staphylococcus_phage(56.6%)

portal,plate,tRNA,protease,terminase,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096810179.1\|1876440_1877373_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	4.0e-09	28.9
WP_096810184.1\|1877365_1877854_-	peptide deformylase	NA	NA	NA	NA
WP_096810190.1\|1878565_1879255_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_157772548.1\|1879476_1879620_-	hypothetical protein	NA	NA	NA	NA
WP_096810192.1\|1879784_1881059_-	amidohydrolase	NA	NA	NA	NA
WP_096810193.1\|1881071_1882586_-	AbgT family transporter	NA	NA	NA	NA
WP_096810195.1\|1882647_1884090_-	amidohydrolase	NA	NA	NA	NA
WP_096810197.1\|1884521_1884719_-	hypothetical protein	NA	NA	NA	NA
WP_096810200.1\|1884989_1885460_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_096810201.1\|1885771_1885963_-	hypothetical protein	U3PCX8	Staphylococcus_phage	4.4e-24	81.7
WP_096810203.1\|1886080_1886263_-	CsbD family protein	NA	NA	NA	NA
WP_096811223.1\|1887557_1888331_-	acetoin reductase	NA	NA	NA	NA
WP_096810205.1\|1889072_1889324_-	hypothetical protein	NA	NA	NA	NA
WP_096810207.1\|1889295_1889682_-	hypothetical protein	NA	NA	NA	NA
WP_096810209.1\|1889685_1889988_-	hypothetical protein	NA	NA	NA	NA
WP_096810211.1\|1890214_1891825_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	5.8e-24	24.4
WP_096810213.1\|1892785_1894177_-	CHAP domain-containing protein	Q5NTY4	Staphylococcus_phage	2.3e-69	33.1
WP_096810215.1\|1894188_1894500_-	hypothetical protein	A0A0D4DCQ8	Staphylococcus_phage	4.2e-24	66.7
WP_157772549.1\|1894552_1894861_-	hypothetical protein	NA	NA	NA	NA
WP_096811224.1\|1894900_1895104_-	XkdX family protein	A0A2H4JI51	uncultured_Caudovirales_phage	2.8e-16	68.9
WP_096810219.1\|1895324_1896563_-\|plate	BppU family phage baseplate upper protein	A0A2H4JGG5	uncultured_Caudovirales_phage	2.8e-159	91.5
WP_096810222.1\|1896574_1898236_-	hypothetical protein	A0A2H4JHN3	uncultured_Caudovirales_phage	1.2e-287	93.3
WP_096810223.1\|1898232_1898595_-	hypothetical protein	A0A2H4JCK2	uncultured_Caudovirales_phage	3.7e-19	81.5
WP_096810225.1\|1898587_1900177_-	peptidase	A0A2H4J5K5	uncultured_Caudovirales_phage	1.0e-278	88.6
WP_096810227.1\|1900186_1901023_-\|tail	phage tail family protein	A0A1W6JQE9	Staphylococcus_phage	9.5e-95	72.3
WP_096810229.1\|1901025_1908006_-\|tail	phage tail tape measure protein	Q8LTH9	Staphylococcus_phage	1.1e-196	37.6
WP_096810231.1\|1908234_1908585_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	2.7e-27	57.8
WP_096810232.1\|1908652_1909183_-	Ig domain-containing protein	A0A1D6Z291	Staphylococcus_phage	2.0e-42	60.1
WP_096810234.1\|1909279_1909909_-\|tail	phage tail protein	A0A2K9VBP7	Staphylococcus_phage	1.5e-60	60.1
WP_065865682.1\|1909941_1910337_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	1.6e-39	63.4
WP_046100246.1\|1910333_1910759_-	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	3.0e-36	58.9
WP_157772550.1\|1910751_1910907_-	hypothetical protein	NA	NA	NA	NA
WP_096810236.1\|1910906_1911086_-	hypothetical protein	NA	NA	NA	NA
WP_046100244.1\|1911091_1911379_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	1.1e-21	56.7
WP_046100243.1\|1911451_1912618_-\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	1.2e-175	80.1
WP_046100242.1\|1912630_1913398_-\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	4.3e-94	69.3
WP_096810238.1\|1913348_1914620_-\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	4.2e-187	76.6
WP_017722722.1\|1914623_1916318_-\|terminase	terminase large subunit	A0A0K1LKI4	Staphylococcus_phage	1.4e-262	75.1
WP_017722721.1\|1916307_1916616_-\|terminase	P27 family phage terminase small subunit	A0A2I6PEQ6	Staphylococcus_phage	6.7e-38	79.4
WP_082080590.1\|1916715_1917075_-	HNH endonuclease	Q8SDQ2	Staphylococcus_virus	1.2e-22	59.6
WP_096810240.1\|1917599_1918085_-	hypothetical protein	A0A1W6JPQ7	Staphylococcus_phage	5.9e-49	70.5
WP_096810241.1\|1918406_1918541_-	transcriptional regulator	A0A2H4JAX0	uncultured_Caudovirales_phage	1.7e-06	68.3
WP_096810246.1\|1918774_1919029_-	DUF1381 domain-containing protein	A0A2H4J5P5	uncultured_Caudovirales_phage	4.2e-22	61.5
WP_096810248.1\|1919029_1919263_-	hypothetical protein	NA	NA	NA	NA
WP_096810249.1\|1919312_1919516_-	hypothetical protein	A0A0D3MVJ6	Staphylococcus_phage	6.8e-23	81.8
WP_096810252.1\|1919552_1920137_-	dUTP pyrophosphatase	A0A1W6JQ84	Staphylococcus_phage	3.9e-87	93.6
WP_096810254.1\|1920129_1920360_-	hypothetical protein	A0A2H4JHN5	uncultured_Caudovirales_phage	1.8e-08	46.8
WP_157772551.1\|1920349_1920493_-	hypothetical protein	NA	NA	NA	NA
WP_096810256.1\|1920493_1920772_-	hypothetical protein	A0A1W6JQ72	Staphylococcus_phage	3.5e-30	87.2
WP_096810259.1\|1920778_1921159_-	hypothetical protein	Q4ZC86	Staphylococcus_virus	1.3e-22	46.9
WP_096810261.1\|1921251_1921641_-	hypothetical protein	I1W655	Staphylococcus_phage	1.0e-19	44.2
WP_096810263.1\|1921627_1921834_-	hypothetical protein	A0A2H4JAZ1	uncultured_Caudovirales_phage	9.6e-25	84.4
WP_046466073.1\|1921830_1922136_-	DUF1140 family protein	A0A2H4JAZ4	uncultured_Caudovirales_phage	1.4e-48	97.0
WP_096811225.1\|1922136_1922604_-	DUF3310 domain-containing protein	A0A2H4J984	uncultured_Caudovirales_phage	5.2e-42	54.6
WP_096810265.1\|1922679_1923027_-	hypothetical protein	A0A1W6JQ77	Staphylococcus_phage	9.9e-14	38.1
WP_096810267.1\|1923037_1923235_-	hypothetical protein	NA	NA	NA	NA
WP_096810269.1\|1923239_1923644_-	DUF1064 domain-containing protein	A0A2H4J5N5	uncultured_Caudovirales_phage	4.0e-51	73.7
WP_096810271.1\|1923655_1923868_-	hypothetical protein	NA	NA	NA	NA
WP_096810275.1\|1924035_1924809_-	ATP-binding protein	A0A1W6JNQ7	Staphylococcus_phage	5.3e-108	84.1
WP_096810277.1\|1924819_1925575_-	replication protein	A0A1W6JQ30	Staphylococcus_phage	3.2e-49	55.6
WP_096810279.1\|1925561_1926239_-	hypothetical protein	A0A1X9H044	Staphylococcus_phage	1.1e-90	70.0
WP_096810281.1\|1926250_1926805_-	single-stranded DNA-binding protein	Q9G027	Staphylococcus_virus	7.4e-80	79.3
WP_096810284.1\|1926882_1927098_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_096811226.1\|1927107_1927263_+	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	1.7e-13	66.0
WP_096810285.1\|1927249_1927444_-	hypothetical protein	A7TWF5	Staphylococcus_phage	3.5e-08	60.0
WP_096810287.1\|1927457_1928225_-	ATP-binding protein	Q8SDW5	Staphylococcus_phage	4.0e-108	75.5
WP_096810289.1\|1928217_1928478_-	hypothetical protein	U3PCY6	Staphylococcus_phage	2.1e-40	96.5
WP_157772552.1\|1928539_1928716_-	hypothetical protein	NA	NA	NA	NA
WP_096810291.1\|1928728_1928992_-	helix-turn-helix domain-containing protein	B7T0G2	Staphylococcus_virus	3.5e-19	57.6
WP_096810293.1\|1929081_1929393_+	hypothetical protein	NA	NA	NA	NA
WP_096810295.1\|1929381_1929633_-	DUF2829 domain-containing protein	A0A2H4JBS5	uncultured_Caudovirales_phage	8.1e-18	59.2
WP_096810297.1\|1929644_1930406_-	Rha family transcriptional regulator	A1BTY9	Staphylococcus_virus	3.6e-77	63.2
WP_096810299.1\|1930418_1930667_-	DUF739 family protein	A0A2I6PDH8	Staphylococcus_phage	4.3e-27	72.7
WP_096810301.1\|1930831_1931578_+	helix-turn-helix transcriptional regulator	Q9G039	Staphylococcus_virus	1.2e-64	55.4
WP_096810304.1\|1931855_1932635_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.7e-08	55.9
WP_157772553.1\|1933078_1933249_+	hypothetical protein	NA	NA	NA	NA
WP_096810306.1\|1933431_1934379_+	hypothetical protein	A0EWN8	Staphylococcus_virus	7.2e-91	56.0

DBSCAN-SWA_6

2064999 : 2073475

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096810420.1\|2064999_2065566_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.2e-30	41.1
WP_096810421.1\|2065568_2066597_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.3e-65	42.8
WP_096810422.1\|2066589_2068077_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.5
WP_096810423.1\|2068055_2070245_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.8e-137	38.9
WP_096810424.1\|2070237_2070909_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_096810425.1\|2070908_2071169_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_096810426.1\|2071171_2071873_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	8.9e-46	41.2
WP_096810427.1\|2071872_2073006_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_096810428.1\|2072992_2073475_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.0e-20	42.7

DBSCAN-SWA_7

2222787 : 2266668

Staphylococcus_phage(48.15%)

portal,plate,protease,integrase,terminase,tail,capsid

attL 2227234:2227252|attR 2273627:2273645

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096810547.1\|2222787_2224521_-	CHAP domain-containing protein	A0A1W6JQL2	Staphylococcus_phage	7.9e-245	69.4
WP_096810548.1\|2224520_2224817_-	hypothetical protein	A0A0D4DCQ8	Staphylococcus_phage	6.2e-25	69.7
WP_157772549.1\|2224869_2225178_-	hypothetical protein	NA	NA	NA	NA
WP_096811233.1\|2225217_2225421_-	XkdX family protein	A0A2H4JI51	uncultured_Caudovirales_phage	2.8e-21	80.3
WP_096810549.1\|2225641_2226880_-\|plate	BppU family phage baseplate upper protein	A0A2H4JGG5	uncultured_Caudovirales_phage	9.2e-155	90.5
WP_096810550.1\|2226891_2228553_-	hypothetical protein	A0A2H4JHN3	uncultured_Caudovirales_phage	7.0e-291	94.6
2227234:2227252	attL	NA	NA	NA	NA
WP_096810551.1\|2228549_2228912_-	hypothetical protein	A0A2H4JCK2	uncultured_Caudovirales_phage	2.1e-19	81.5
WP_096810552.1\|2228904_2230491_-	peptidase	A0A2H4J5K5	uncultured_Caudovirales_phage	9.2e-224	71.8
WP_096810553.1\|2230500_2231337_-\|tail	phage tail family protein	A0A2H4J7E0	uncultured_Caudovirales_phage	7.8e-81	56.9
WP_096810554.1\|2231350_2231749_-	hypothetical protein	A0A0K1LKC4	Staphylococcus_phage	8.1e-20	44.8
WP_096810555.1\|2231776_2238334_-\|tail	phage tail tape measure protein	Q8LTH9	Staphylococcus_phage	1.9e-161	36.6
WP_096810557.1\|2238562_2238913_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	4.6e-27	56.0
WP_096810558.1\|2238980_2239511_-	Ig domain-containing protein	A0A1D6Z291	Staphylococcus_phage	9.1e-43	60.8
WP_096810559.1\|2239607_2240237_-\|tail	phage tail protein	A0A2K9VBP7	Staphylococcus_phage	2.8e-59	59.0
WP_065865682.1\|2240270_2240666_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	1.6e-39	63.4
WP_096810560.1\|2240662_2241088_-	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	1.5e-35	58.1
WP_096810561.1\|2241084_2241447_-	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	7.9e-22	47.5
WP_096810562.1\|2241433_2241715_-	hypothetical protein	A0A2H4J447	uncultured_Caudovirales_phage	2.7e-17	51.1
WP_096810563.1\|2241810_2243010_-\|capsid	phage major capsid protein	Q4ZD74	Staphylococcus_phage	6.8e-86	46.1
WP_096810564.1\|2243022_2243751_-\|protease	Clp protease ClpP	A0A2H4J8Y7	uncultured_Caudovirales_phage	3.4e-48	54.0
WP_096810565.1\|2243713_2244898_-\|portal	phage portal protein	A0A1W6JPQ9	Staphylococcus_phage	3.9e-102	47.6
WP_096810566.1\|2244913_2246584_-\|terminase	terminase large subunit	A8AT95	Listeria_phage	1.7e-199	60.2
WP_096811234.1\|2246580_2246922_-	hypothetical protein	A0A2H4JAH7	uncultured_Caudovirales_phage	3.7e-29	60.2
WP_096810567.1\|2247115_2247451_-	HNH endonuclease	D2XR61	Bacillus_phage	3.2e-25	55.5
WP_096810568.1\|2247691_2248117_-	hypothetical protein	Q4ZD23	Staphylococcus_phage	2.3e-33	53.9
WP_096810569.1\|2248175_2248424_-	hypothetical protein	NA	NA	NA	NA
WP_096810570.1\|2248425_2248731_-	DUF5052 family protein	S4UCP8	Listeria_phage	4.3e-29	67.7
WP_157772554.1\|2248743_2248893_-	hypothetical protein	NA	NA	NA	NA
WP_096810571.1\|2248893_2249124_-	DUF1381 domain-containing protein	A0A2H4JGT2	uncultured_Caudovirales_phage	1.0e-19	73.7
WP_096810572.1\|2249123_2249489_-	hypothetical protein	NA	NA	NA	NA
WP_096810249.1\|2249538_2249742_-	hypothetical protein	A0A0D3MVJ6	Staphylococcus_phage	6.8e-23	81.8
WP_096810252.1\|2249778_2250363_-	dUTP pyrophosphatase	A0A1W6JQ84	Staphylococcus_phage	3.9e-87	93.6
WP_096810573.1\|2250355_2250586_-	hypothetical protein	A0A2H4JHN5	uncultured_Caudovirales_phage	5.9e-07	44.2
WP_096810574.1\|2250575_2250821_-	hypothetical protein	NA	NA	NA	NA
WP_096810575.1\|2250942_2251419_-	hypothetical protein	A0A2H4JCS1	uncultured_Caudovirales_phage	6.7e-05	56.9
WP_096810576.1\|2251425_2251815_-	hypothetical protein	A0A286QNB5	Streptococcus_phage	5.7e-10	37.5
WP_096810577.1\|2251907_2252315_-	hypothetical protein	U3PBR0	Staphylococcus_phage	3.3e-16	41.0
WP_157772555.1\|2252308_2252509_-	hypothetical protein	A0A1W6JQ49	Staphylococcus_phage	1.5e-22	79.7
WP_096810579.1\|2252508_2253024_-	DUF3310 domain-containing protein	A0A2H4JC86	uncultured_Caudovirales_phage	2.2e-65	57.3
WP_096810580.1\|2253024_2253378_-	hypothetical protein	A0A1W6JQ77	Staphylococcus_phage	4.5e-46	74.1
WP_096810581.1\|2253379_2253568_-	hypothetical protein	A0A1W6JQ89	Staphylococcus_phage	8.5e-28	93.5
WP_096810582.1\|2253560_2253971_-	RusA family crossover junction endodeoxyribonuclease	A0A1D6Z252	Staphylococcus_phage	7.5e-45	71.7
WP_096810583.1\|2253981_2254200_-	hypothetical protein	A0A1W6JPS2	Staphylococcus_phage	1.2e-22	66.7
WP_096810585.1\|2254355_2255129_-	ATP-binding protein	A0A1W6JP70	Staphylococcus_phage	1.1e-108	83.2
WP_096810586.1\|2255139_2255907_-	DnaD domain protein	A0A2H4JAS0	uncultured_Caudovirales_phage	7.2e-57	66.7
WP_096810587.1\|2255893_2256574_-	hypothetical protein	U3PDZ6	Staphylococcus_phage	3.8e-118	92.8
WP_096810588.1\|2256602_2257037_-	single-stranded DNA-binding protein	G4KNN8	Staphylococcus_phage	1.2e-53	72.1
WP_096810589.1\|2257036_2257687_-	single-stranded DNA-binding protein	A0A2H4J5X9	uncultured_Caudovirales_phage	8.2e-86	75.1
WP_096810590.1\|2257679_2257934_-	hypothetical protein	A0A2H4J1Y9	uncultured_Caudovirales_phage	4.5e-24	67.9
WP_096810591.1\|2258185_2258395_-	hypothetical protein	A0A2H4J149	uncultured_Caudovirales_phage	3.3e-12	47.8
WP_096810592.1\|2258458_2258728_+	hypothetical protein	A0A1J0MFQ1	Staphylococcus_phage	3.5e-35	79.8
WP_096810593.1\|2258858_2259110_-	DUF2829 domain-containing protein	A0A2H4JBS5	uncultured_Caudovirales_phage	1.1e-17	59.2
WP_096810594.1\|2259121_2259331_-	pathogenicity island protein	Q4ZCA9	Staphylococcus_virus	2.8e-08	49.3
WP_096810595.1\|2259342_2260101_-	Rha family transcriptional regulator	A1BTY9	Staphylococcus_virus	5.6e-78	62.8
WP_096810596.1\|2260118_2260343_-	helix-turn-helix transcriptional regulator	Q9MBT3	Staphylococcus_prophage	6.1e-25	74.0
WP_096810597.1\|2260509_2261232_+	helix-turn-helix transcriptional regulator	G4KNM8	Staphylococcus_phage	1.2e-58	50.6
WP_096810598.1\|2261506_2262256_+	hypothetical protein	Q4ZCY3	Staphylococcus_virus	9.6e-22	53.4
WP_096810599.1\|2262318_2263377_+\|integrase	site-specific integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	2.9e-157	77.6
WP_096810600.1\|2263445_2264843_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_096810601.1\|2264981_2265431_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_096810602.1\|2265420_2266668_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.0e-109	46.0
2273627:2273645	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2369035 : 2389343

uncultured_Caudovirales_phage(35.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096810698.1\|2369035_2369836_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.0e-14	30.3
WP_096810699.1\|2369832_2370792_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	3.6e-05	52.0
WP_096810700.1\|2370781_2371750_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	6.8e-137	79.5
WP_096810701.1\|2371987_2372956_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.1e-174	93.5
WP_096810702.1\|2373193_2375299_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	90.0
WP_096810703.1\|2375261_2375660_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	2.8e-52	73.5
WP_096810704.1\|2376363_2377251_+	DMT family transporter	NA	NA	NA	NA
WP_096810705.1\|2377264_2377765_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.1e-53	72.3
WP_096810706.1\|2378181_2379696_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.8e-72	37.4
WP_096810707.1\|2379996_2381505_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	6.1e-68	33.6
WP_096810708.1\|2381642_2382584_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	1.1e-11	25.5
WP_096810709.1\|2382774_2383323_-	5'(3')-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	6.5e-28	37.2
WP_096810710.1\|2383551_2384607_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	5.5e-23	26.9
WP_096810711.1\|2384800_2386315_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_096810712.1\|2386311_2387274_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-25	33.8
WP_096810713.1\|2387564_2389343_-	DNA helicase RecQ	A0A2P1EM61	Moumouvirus	9.1e-79	38.5

DBSCAN-SWA_9

2398310 : 2405692

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096810721.1\|2398310_2399399_-	anthranilate synthase component I family protein	S4VT78	Pandoravirus	2.3e-24	34.5
WP_096810722.1\|2399382_2399976_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.6e-34	43.0
WP_096810723.1\|2400222_2400894_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.7e-65	57.2
WP_096810724.1\|2400895_2401321_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.4e-07	25.2
WP_096810725.1\|2401313_2402030_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.5e-51	45.4
WP_096810726.1\|2402274_2402868_+	hypothetical protein	NA	NA	NA	NA
WP_096810727.1\|2402929_2403184_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_096810728.1\|2403242_2404334_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	4.2e-58	41.2
WP_096810729.1\|2404852_2405692_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-61	43.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017468

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3716 : 24569

Staphylococcus_phage(60.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096810211.1\|3716_5327_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	5.8e-24	24.4
WP_096810213.1\|6287_7679_-	CHAP domain-containing protein	Q5NTY4	Staphylococcus_phage	2.3e-69	33.1
WP_096810215.1\|7690_8002_-	hypothetical protein	A0A0D4DCQ8	Staphylococcus_phage	4.2e-24	66.7
WP_157772549.1\|8054_8363_-	hypothetical protein	NA	NA	NA	NA
WP_096811224.1\|8402_8606_-	XkdX family protein	A0A2H4JI51	uncultured_Caudovirales_phage	2.8e-16	68.9
WP_096810219.1\|8826_10065_-\|plate	BppU family phage baseplate upper protein	A0A2H4JGG5	uncultured_Caudovirales_phage	2.8e-159	91.5
WP_096810222.1\|10076_11738_-	hypothetical protein	A0A2H4JHN3	uncultured_Caudovirales_phage	1.2e-287	93.3
WP_096810223.1\|11734_12097_-	hypothetical protein	A0A2H4JCK2	uncultured_Caudovirales_phage	3.7e-19	81.5
WP_096810225.1\|12089_13679_-	peptidase	A0A2H4J5K5	uncultured_Caudovirales_phage	1.0e-278	88.6
WP_157772565.1\|14528_15086_-	transglycosylase SLT domain-containing protein	R4WAN6	Staphylococcus_phage	1.9e-30	44.5
WP_096811283.1\|15061_21490_-\|tail	phage tail tape measure protein	Q8LTH9	Staphylococcus_phage	7.4e-163	37.3
WP_096810231.1\|21718_22069_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	2.7e-27	57.8
WP_096810232.1\|22136_22667_-	Ig domain-containing protein	A0A1D6Z291	Staphylococcus_phage	2.0e-42	60.1
WP_065865682.1\|23424_23820_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	1.6e-39	63.4
WP_046100246.1\|23816_24242_-	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	3.0e-36	58.9
WP_157772550.1\|24234_24390_-	hypothetical protein	NA	NA	NA	NA
WP_096810236.1\|24389_24569_-	hypothetical protein	A0A2I6PEH8	Staphylococcus_phage	1.5e-05	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017466

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017468

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection