CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052766	Alteromonas pelagimontana strain 5.12 chromosome, complete genome	1 crisprs	DEDDh,cas3,WYL,PrimPol,csa3,DinG,cas6f,Cas9_archaeal	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052766_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052766_1

3474789-3474876

Unclear

I-F

Consensus_repeat	Method
CTTCACCGCCGCACAGGCGGCTTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052766_1

>merge|NZ_CP052766|1|3474789-3474876|CRISPRCasFinder
CTTCACCGCCGCACAGGCGGCTTAGAAAAACATGGAATACTGCTAATCACGCTGAATATCCTTCACCGGCGCACAGGCGGCTTAGAAA

>NZ_CP052766|1|1|3474789-3474876|CRISPRCasFinder
CTTCACCGCCGCACAGGCGGCTTAGAAA	AACATGGAATACTGCTAATCACGCTGAATATC
CTTCACCGGCGCACAGGCGGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052766.1\|WP_075610211.1\|3473424_3474366_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP052766.1\|WP_075610332.1\|3465978_3467001_-\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP052766.1\|WP_075610209.1\|3470041_3471154_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP052766.1\|WP_075610207.1\|3468408_3468687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052766.1\|WP_075610219.1\|3483891_3484377_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|236777
NZ_CP052766.1\|WP_075610218.1\|3482958_3483786_+\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP052766.1\|WP_139316257.1\|3481008_3481188_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052766.1\|WP_075610206.1\|3467849_3468239_-\|DUF2170-family-protein	unknown	unknown	gnl\|CDD\|378318
NZ_CP052766.1\|WP_075610217.1\|3482235_3482952_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|185069
NZ_CP052766.1\|WP_075610210.1\|3471181_3471517_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP052766.1\|WP_083638563.1\|3476592_3477030_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270284
NZ_CP052766.1\|WP_075610333.1\|3471569_3473414_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP052766.1\|WP_075610204.1\|3465328_3465976_-\|YjfK-family-protein	unknown	unknown	gnl\|CDD\|371191
NZ_CP052766.1\|WP_075610220.1\|3484380_3485562_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP052766.1\|WP_075610335.1\|3481233_3482010_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP052766.1\|WP_075610213.1\|3475330_3476593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052766.1\|WP_075610208.1\|3468837_3469884_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP052766.1\|WP_075610215.1\|3478604_3480506_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP052766.1\|WP_075610214.1\|3477022_3478621_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP052766.1\|WP_075610205.1\|3467145_3467826_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|281941

Protein	Function_ID	Function_description	E-value
NZ_CP052766.1\|WP_075610211.1\|3473424_3474366_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	3.84264e-141
NZ_CP052766.1\|WP_075610332.1\|3465978_3467001_-\|two-pore-domain-potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	4.73399e-12
NZ_CP052766.1\|WP_075610209.1\|3470041_3471154_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP052766.1\|WP_075610215.1\|3478604_3480506_+\|GGDEF-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.33025e-101
NZ_CP052766.1\|WP_075610219.1\|3483891_3484377_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|236777	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR.	6.73443e-88
NZ_CP052766.1\|WP_075610218.1\|3482958_3483786_+\|serine-O-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	1.21421e-97
NZ_CP052766.1\|WP_075610333.1\|3471569_3473414_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP052766.1\|WP_075610206.1\|3467849_3468239_-\|DUF2170-family-protein	gnl\|CDD\|378318	pfam09938, DUF2170, Uncharacterized protein conserved in bacteria (DUF2170). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.41924e-42
NZ_CP052766.1\|WP_075610217.1\|3482235_3482952_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|185069	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional.	8.88555e-145
NZ_CP052766.1\|WP_075610210.1\|3471181_3471517_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	4.03564e-51
NZ_CP052766.1\|WP_083638563.1\|3476592_3477030_+\|hypothetical-protein	gnl\|CDD\|270284	cd13566, PBP2_phosphate, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.25213e-07
NZ_CP052766.1\|WP_075610204.1\|3465328_3465976_-\|YjfK-family-protein	gnl\|CDD\|371191	pfam10679, DUF2491, Protein of unknown function (DUF2491). This is a bacterial family of uncharacterized proteins.	6.25239e-107
NZ_CP052766.1\|WP_075610220.1\|3484380_3485562_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP052766.1\|WP_075610335.1\|3481233_3482010_-\|inositol-1-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	1.87994e-131
NZ_CP052766.1\|WP_075610208.1\|3468837_3469884_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP052766.1\|WP_075610214.1\|3477022_3478621_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.90258e-52
NZ_CP052766.1\|WP_075610205.1\|3467145_3467826_-\|PspA/IM30-family-protein	gnl\|CDD\|281941	pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.	4.47775e-18

>NZ_CP052766.1|WP_075610211.1|3473424_3474366_+|protein-translocase-subunit-SecF
MQILNLSETVNFMRLRIPTMILSTCLIIGSLVSLGVNSLNWGLDFTGGTLIEVGYSQSADLTKIRHELTAANFEDAVVQNFGTSEDVLIRISPREGVKAATIGNQVLEALRADGSDVEMRRIEFVGPNVGDELTEQGGLAMLVALLCILVYVAMRFEWRFSLGSVAALVHDVILTLGLFSFLQIEFDLTVLAALLAVIGYSLNDTIVVCDRIRENFRKIRKAEPVEVINISLTQTLSRTVITSLTTILVLVALYYKGGALIHGFATALLFGVVVGTYSSIYIASSVALALGISKEDLIPPQVEKEGQDMDSLL
>NZ_CP052766.1|WP_075610333.1|3471569_3473414_+|protein-translocase-subunit-SecD
MLNQNSIWKVLLVIVIIGLCTLYALPNIYGEDNAVQISAGRDGNVTVQMVDDVKKTLADNNITPKRIEFENEQILVRLNDSDAQLRARELLETSLGTNYSVAMNLAADTPQWLEELGGTPMKLGLDLRGGVHFLMEVDMSEAISKSLEDAQDNFRTALREEKLRYRTVQQRENHVDIHFRDEETLEKAQFFLRNRNPDLTFEEVDDMVLRASFSEAKLQGIRENAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDTARAKEILNATATLEFRLVDQDNDVRDALNGRVPAGSQVIEDQQGRPQLLEKRIMLTGNHIIDANSGVDEYGIPQVNISLDSEGGNKMSRTTRGNIGKPMATVFIEYKSTGERNADGKLVFEKHEEVISVATIQAQLGSSFRITGLDSPKEARDLSLLLRAGALIAPIQIVEERTVGPSLGKENIELGMQAILWGLAAVLVFMLIYYKAFGLVANFALLTNLVIIIGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAIVVTRVIVNAVWGGRKVKKLAI
>NZ_CP052766.1|WP_075610210.1|3471181_3471517_+|preprotein-translocase-subunit-YajC
MSLFISNAYAQSSGAPQGGGYEMLIMLGVFGLIFYFLLYRPQAKRVKEHKNLVSSLSKGDEVLTQGGLVGRIIKVAEDKDFIEIALNDTSNIVVQKSSVTAVLPKGTMKSI
>NZ_CP052766.1|WP_075610209.1|3470041_3471154_+|tRNA-guanosine(34)-transglycosylase-Tgt
MQFELLNTDGKARRGKLVFERGVVETPAFMPVGTYGTVKGMTPEELSDSGAHICLGNTFHLMLRPGTSIIRQHGDLHDFMHWDKPILTDSGGFQVFSLGDLRKITEEGVTFRSPINGEKILLTPEKSMDVQRDLGSDIVMIFDECTPYPATEQEARLSMELSLRWAKRSKSAHGDNPSALFGIIQGGMYESLRDVSLKGLEDIGFDGYAIGGLSVGEPKEDMIRIIDHTAPKIPQNKPRYLMGVGKPEDIVEAVRRGIDMFDCVMPTRNARNGHLFVTEGVVKIRNAKHRTDTAALDENCDCYTCKNYSRSYLHHLDKCNEILGARLNTIHNLRYYQRVMQGLRDAIAQEELDAFVETFYEQKNMPVPAL
>NZ_CP052766.1|WP_075610208.1|3468837_3469884_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MKLSDFSFTLPDHLIAKYPTEKRSASRLMHLDGKTGNVVHRQFEETLSLVEEGDLLVFNNTRVMPARLKGKKASGGQVEVLVERILPDNTVYAHVRASKAPKPDTKLVLEEAVHATVIGRLDALFHLRFDHDTPVLAILEAHGHMPLPPYIDRPDENSDKERYQTVYNQKPGAVAAPTAGLHFDDTILTALRQKGVNLAFVTLHVGAGTFQPVRVDNILEHKMHAEYAEVSQSVVDAVLATKAAGKRVIAVGTTSVRSLESAAVVAESSESLIMPFFADTDIFIYPGYRFKVVDAMFTNFHLPESTLMMLISAFAGRDNVMQAYAQAIAEEYRFFSYGDSMFIEKADG
>NZ_CP052766.1|WP_075610207.1|3468408_3468687_+|hypothetical-protein
MVVFIMTKNAWRQLVQRIVKSEMSLRGVKYQSLSERLLEVGVEQSADNLRNKVNKGIMGADLLLQILLVLNARPITVQGLQEILAELDAEKG
>NZ_CP052766.1|WP_075610206.1|3467849_3468239_-|DUF2170-family-protein
MTWDLDKIDSLLQGHDDYVITREEDCLLIANQDGIDAWLAISGEQILVESLLFSSSQVKNKAALDHEILSTHMVFPLTTVGISTIGGEEYYTAFGALSAQSKAESIVIEVETLFQNVASFLDAYETHLK
>NZ_CP052766.1|WP_075610205.1|3467145_3467826_-|PspA/IM30-family-protein
MSVWKKLITAVRGGANEAAQSVVDSQAIRILEQEIREAKEELRKSDHARTQILAKCKLSQQKIDSFNASISEYEAHARKAIDSDRELALECAQKVADLKSEREQEQSYLDQFQQSEKQLAGNIQQAKANLRRLEQQVDMVKATESVQKAQVAVSSRHMGANSKMKTATESLSRIQEKQKMKNAELQAAEELASEESNGDLEKRLAAAGIKGGKTSADDELSRILGK
>NZ_CP052766.1|WP_075610332.1|3465978_3467001_-|two-pore-domain-potassium-channel-family-protein
MLSYFSESRWYTIAAIALFYAFSSWILLRAVGETALTSSVDYLYWLAVTASTVGYGDLSPVSRPGKLIVALYVIPLGLTIFAMVVGRLAAWVSNQWKKGLKGMKQLHIKNHILVIGWNEQKTLLLLDLLLKERDALPDHPQIVLCVKADITNPMPDKVEFVRVESFNKDEDMDKACLRDASVILIDNPQDDVTLTTALYCSQRNPKAHQVAYFTDDSLVPLLQQHCPNVECTPSVAVEMLAKSAFDPGSSMLHHDLLSVDAGQAQFSVAIPQTGQTLTVADVFINLKKHYDAIFIGYAPAGVYQKLVVNPEFEVTLSPGDKLFYIAESRIRDIDWKKLGA
>NZ_CP052766.1|WP_075610204.1|3465328_3465976_-|YjfK-family-protein
MFGKLFGKDNKPSKPKAPEVMGLYLGGSFELDSLKLSLLEPELVIEAAARSQLIQAVGHAPLDSGGDLLRFYTDDDAFLQVVLDGGMSENHITDVKLWHFYETKTIGSDSQWQDCLNNIISQPTYSLEGHTYTRVWEAVGDVSPPVAVTETTYEEDGDVSTTDQFIMLYERPLDNDRTESLLVVGEEKVVGNNLDRCLVISTGFDIQPADIQING
>NZ_CP052766.1|WP_075610213.1|3475330_3476593_+|hypothetical-protein
MAKCFVLLFLLTAGAAASPQFEVSGYGTLGVVKTDSGVFGYRADYSKTGGVFADELDFGESSNLGVQLDILATDKLDFVVQGIYRDQENFTLDSALNLAFVRYTPEPNWSFRAGRTAFDLFLVTEYRDINFAYPWAHVPNEIYGIFPHRFLDGVDVSYRRPLTDEITVSAKFFYGSTESVLTAYSSKNVEPLKFDDVFGVAIDFSAMSWDIAFNSTQVKFDSTIVQPLIEGMELLEQLPGSEFIWPNALQLAHYLDLDNRKGKYTSISGQYRFDKVTVMSEMAKVSSDSLTIRNVYSGYVSAIYHVSNHNFFATLAFADTKPFNLEKQNIDTVALAQIPGADMLYEGAEFLLNYYNHNQKTLSVGWRWDFVENMSLKMQWDHTRISKDGSTFWQPADPSNYCSCNSGHVNTLFTNVSFLF
>NZ_CP052766.1|WP_083638563.1|3476592_3477030_+|hypothetical-protein
MSWHKLLIVMLVIAAIGATRVVAGTELVVVVHKNNPTIVLSKSQLIDMFMGKFVAFPNGAPAVPVDIGGNAGAREEFYRELVGMPLARVNAYWSRVKFSGKARPPSEYKDEQAILDFVSRTENGIAYVSKQSITPSVKVVYSFDE
>NZ_CP052766.1|WP_075610214.1|3477022_3478621_+|diguanylate-cyclase
MNKSGLLIRLAVVIGFAAVAIGFLSTQLFYRLTYNQEVKIAHQNIESLYRTIETTAATAAYLADADLAKEVVTGLTTNDVVLNATMSFEDITVSGNESLSVEPRVFAVQSLFEQEKTIGSLAIEPNLEFIESRARQLALDNAKAMIIQAFVVTLVAICVAFLLITRPMIKIAQSLHKTTPGEGNRLAVPEFHQHSELGGLVRDINNLLDKTEQQFSQERQLRSEIEALEKRFRMLFENSFSPIVLMEPRGNILLFNAAFEKIIERLELPLRKSFGPLLEGLFAEPSKLSKTVELAFANEEIATGEFKLKSQDPELSLWVQVVVTSIISDDLREYYQITLHDISKRKKELEALAYQADFDKLTNLYNRQGLEKKLDQFIDNKKPFALVLIDLNWFKQINDVYGHESGDEILIFVADRMKKTLRPQDFGCRWGGDEFVLLLDNASHHETRDLVDRLARRIGRPYFLRKFNQNVTIGASIGAAMYPQDSSDLQTIINLADNAMYDVKKTKDDHPGLSLKFANELVGEASVREKSV
>NZ_CP052766.1|WP_075610215.1|3478604_3480506_+|GGDEF-domain-containing-protein
MKSRFDFFTSLNALLPDITYRVAQVRAVLVVFIALFIILTVSALWRGEGEWLLEQTTIILFFLILLKYMSADTSNMVAGMSLWTVTIFASSIAFYYDGLFDTALFLYPGVLIFASFLGGKTIILPLAFYMLFSFYFFAYAISIDLIENAYDVPEAAWRKAADMSLMLLLYGLGIILITHYVKGLLQRLTDQKKRTELIRKDAESRLLFDEQTSLPNGEKCKRDFGSVVLSAHKKAQVVGFIILRMNNFDWINSTLGHKLGDAVLASLSERYIKLEDDSTRVYRTSGIEFTFIKQAPDFESLNDFCHQAIRSTIMPLAISDFDFEMSCALGIAAAPFDGTDFEELRRKASFAVYRAKKDEQNSYRFFENDMKDAIQRKLQLTHELKTAIELNQFELFYQPKVELATNQIVGAEALIRWKKDGNYLLPKEFIPVAEESGLIVEIGRWALEAACLECARWQQAGLHGMTVAVNLSPVQFKRGSLPTHVFRALQKSGLDPNLLELEITESLFIDDPDHVKQQVHAMVERGVNFAIDDFGTGYSNLNYLAKFNASTLKIDMSFVREMVQNPQQQHIVSAIIKMSQVMDLENIAEGVEDAQTAALLREQGCIYGQGFYWSPPLPAGEFFQFVRDQPQAA
>NZ_CP052766.1|WP_139316257.1|3481008_3481188_+|hypothetical-protein
MLKVSDGGKAFKNEQKGLSSFYFPMHQAKEDVYIYSSDGEVEVSFNSSSMKCRCQRKEK
>NZ_CP052766.1|WP_075610335.1|3481233_3482010_-|inositol-1-monophosphatase
MHPMLNIAVRAARAAGTIIVRGFENRSDIATESKGANDFVTQIDKEAEKAIINKIQQSYPDHSFLGEESGETAGSDTEYQWIIDPLDGTTNFVKGIPHFAVSIALLHKGRIEQGVVFDPIRGELFTASRGQGAQLNGYRIRTSKPKDLQETILATGLPFKNKARFGEYALSLNKIFQECGDIRRAGSAALDLAYVAAGRHDGYWERGVKPWDTAAGELLVRESGGLVTDFKGNNDPLYKGEIVAGSAKVIQGVLKHLK
>NZ_CP052766.1|WP_075610217.1|3482235_3482952_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLDNIRIVLVNTSHTGNIGSTARAMKTMGLSNLYLVDPVKEPDGQASALAAGAGDVLANATIVPTLQEAVAECGLVVGTSARSRTHSWPMLEPRECGGKLVSEVENYPVALVFGRENNGLSNEELQQCHFHVCIPANPDYSSLNLAAAVQTLCYEIRMAHLDTTRLPEKEAEYPLNEDLERFYVHLESTLLRTNFIVKNHPGMVMTKLRRLFNRARPESQELNILRGMLSSIDKSTKE
>NZ_CP052766.1|WP_075610218.1|3482958_3483786_+|serine-O-acetyltransferase
MFERIKDDIRGVFHRDPAARNTFEVLTNYPGLHAVWLHRISHKLWRMNWKWLARSLSTFSRWLTGIEIHPGATLGRRVFIDHGMGVVIGETAEIGDDVTLYHGVTLGGTSWKAGKRHPTLERNVVVGAGAKVLGPITIGEGAKVGSNSVVVKDTPAGATVVGIPGRIVLSAVDKDEIERTSKKRNQIAEKYGFDAYAVAPDNPDPVANAMGVMLEHMHKMDAKVEELCGVIRSLGGDVCTDNLHSITAEDFANTGIDPFVRDEAGDSHEAFDPKI
>NZ_CP052766.1|WP_075610219.1|3483891_3484377_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAMLDVALHSTQGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRGPGGGYLLGRDAGSIAIGEVIRAVDETVDATRCQGLSDCQGGERCLTHSLWQDLSDRISVFLNSITLGELMDKRDVLEVAGRQDKSKSLSKIAQDIEVSIRL
>NZ_CP052766.1|WP_075610220.1|3484380_3485562_+|IscS-subfamily-cysteine-desulfurase
MTRSSSPVYLDYAATTPVDPRVAEKMAACLTLDGNFGNPASRTYRFGWMAEEAVDVARNQIADLINCDPREIVFTSGATESDNLAIKGVAEQYADKGKHIVTVETEHKAVLDTCAYLAGKGFEITYLPVDEKGLISLAQLRQSLRQDTILVSVMHVNNEIGVIQDIAAIGELCRQQGVLFHVDAAQSVGKVAIDTQALEVDLLSISAHKIYGPKGIGGLYVRRRPKVKLAAQIHGGGHERGMRSGTLPTHQIVGMGEALELAGKAMATDTARIQQLRDTLWQGLSALDDIYLNGDAQHRIAGNLNVSFGGVDGESLMMGLHDIAVSSGSACTSASLEPSYVLRAIGRSAELAHSGIRFSVGRFTTAEDIEYVIDKVCDTVTKLRLAQKRSTHA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

324789 : 423361

Vibrio_phage(22.73%)

head,tail,terminase,portal,integrase,transposase,capsid

attL 323918:323964|attR 390717:390763

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
323918:323964	attL	NA	NA	NA	NA
WP_097349138.1\|324789_325957_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-56	41.5
WP_097349226.1\|327164_328363_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.5e-109	60.5
WP_097349266.1\|328425_329988_+	hypothetical protein	NA	NA	NA	NA
WP_075609115.1\|329992_333142_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_075609113.1\|333783_335826_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_075609112.1\|335818_337384_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_075609111.1\|337538_337805_-	hypothetical protein	NA	NA	NA	NA
WP_075609110.1\|337949_343859_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	3.6e-87	23.8
WP_075609109.1\|343851_347196_-	hypothetical protein	NA	NA	NA	NA
WP_075609108.1\|347443_348436_-	hypothetical protein	NA	NA	NA	NA
WP_075609107.1\|348442_350092_-	hypothetical protein	NA	NA	NA	NA
WP_075609106.1\|350125_353212_-	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	2.2e-40	24.6
WP_097349265.1\|353651_354158_+	BrxE family protein	NA	NA	NA	NA
WP_075609104.1\|354160_354937_+	DUF1819 family protein	NA	NA	NA	NA
WP_075609103.1\|354923_355118_+	hypothetical protein	NA	NA	NA	NA
WP_075607115.1\|355224_356205_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	5.1e-156	82.2
WP_075609102.1\|356213_356705_+	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_075609101.1\|360281_362345_+	hypothetical protein	NA	NA	NA	NA
WP_075609100.1\|362344_364291_+	hypothetical protein	NA	NA	NA	NA
WP_083638402.1\|364284_366837_+	PglZ domain-containing protein	NA	NA	NA	NA
WP_075609099.1\|368962_370534_-	NERD domain-containing protein	NA	NA	NA	NA
WP_075609098.1\|370537_372076_-	hypothetical protein	NA	NA	NA	NA
WP_075609097.1\|372072_373278_-	hypothetical protein	NA	NA	NA	NA
WP_075609096.1\|373277_375122_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_170669097.1\|375118_377584_-	helicase	NA	NA	NA	NA
WP_075609094.1\|378605_379211_+	hypothetical protein	NA	NA	NA	NA
WP_075609093.1\|379449_380100_+	hypothetical protein	NA	NA	NA	NA
WP_075609092.1\|380117_380819_+	hypothetical protein	NA	NA	NA	NA
WP_075609091.1\|380907_381411_+	hypothetical protein	NA	NA	NA	NA
WP_075609090.1\|381559_382600_+	WYL domain-containing protein	NA	NA	NA	NA
WP_075609089.1\|382596_383682_-	cell division protein FtsZ	NA	NA	NA	NA
WP_170668998.1\|384006_384174_-	hypothetical protein	NA	NA	NA	NA
WP_075609088.1\|384249_385101_-	HD domain-containing protein	NA	NA	NA	NA
WP_075609087.1\|385174_386395_-	DUF3596 domain-containing protein	A0A1W6JTA0	Pseudomonas_phage	2.0e-32	27.9
WP_061485455.1\|386387_386624_-	hypothetical protein	NA	NA	NA	NA
WP_083638399.1\|386723_386945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075609085.1\|387020_388220_-	hypothetical protein	NA	NA	NA	NA
WP_075609084.1\|388850_389429_+	hypothetical protein	NA	NA	NA	NA
WP_075609083.1\|389645_390470_+	hypothetical protein	NA	NA	NA	NA
WP_075609082.1\|391085_391280_+	hypothetical protein	NA	NA	NA	NA
390717:390763	attR	NA	NA	NA	NA
WP_075609081.1\|391411_392029_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_075609080.1\|392074_393112_-	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_075609079.1\|393104_394745_-	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_075609078.1\|394748_395660_-	hypothetical protein	NA	NA	NA	NA
WP_075609077.1\|395754_396330_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_075609076.1\|396415_396880_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_075609075.1\|396906_397182_-	hypothetical protein	NA	NA	NA	NA
WP_170668999.1\|397376_397685_-	hypothetical protein	NA	NA	NA	NA
WP_075609073.1\|397761_401910_-	hypothetical protein	J9QGS3	Pectobacterium_phage	5.7e-07	24.1
WP_075609072.1\|401913_402546_-	hypothetical protein	NA	NA	NA	NA
WP_075609071.1\|402542_403133_-	hypothetical protein	NA	NA	NA	NA
WP_075609070.1\|403129_405616_-	hypothetical protein	A0A2H4PI09	Pseudomonas_phage	4.9e-46	28.2
WP_170669000.1\|405608_405755_-	hypothetical protein	NA	NA	NA	NA
WP_075609069.1\|405901_406198_-	hypothetical protein	NA	NA	NA	NA
WP_075609068.1\|406206_407127_-	hypothetical protein	G8EY04	Synechococcus_phage	2.0e-37	32.8
WP_075609067.1\|407269_407704_-	hypothetical protein	NA	NA	NA	NA
WP_075609066.1\|407696_407984_-	hypothetical protein	NA	NA	NA	NA
WP_170669001.1\|407986_408151_-	hypothetical protein	NA	NA	NA	NA
WP_075609065.1\|408191_409223_-\|capsid	major capsid protein	K7PGW9	Enterobacteria_phage	2.9e-77	46.7
WP_075609064.1\|409234_409594_-\|head	head decoration protein	NA	NA	NA	NA
WP_075609063.1\|409593_410865_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.5e-59	38.2
WP_075610038.1\|410882_412457_-\|portal	phage portal protein	A0A2D1GMV5	Marinobacter_phage	1.1e-176	59.9
WP_075609062.1\|412492_412708_-	hypothetical protein	A0A2D1GN20	Marinobacter_phage	1.6e-06	47.5
WP_083638397.1\|412694_414644_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	5.2e-152	45.9
WP_075609061.1\|414609_415125_-\|terminase	terminase small subunit	O64316	Escherichia_phage	1.0e-22	35.0
WP_075609060.1\|415315_415927_-\|tail	phage tail protein	NA	NA	NA	NA
WP_075609059.1\|415939_416284_-	hypothetical protein	NA	NA	NA	NA
WP_075609058.1\|416315_416837_-	hypothetical protein	A0A2I7RSZ4	Vibrio_phage	1.4e-16	41.4
WP_075609057.1\|416833_417070_-	hypothetical protein	A0A2I7RFR7	Vibrio_phage	1.0e-06	39.1
WP_075609056.1\|417066_417504_-	peptidase	A0A1B1IPM8	uncultured_Mediterranean_phage	8.6e-31	46.0
WP_075609055.1\|417684_418326_-	hypothetical protein	NA	NA	NA	NA
WP_139316235.1\|418345_418783_-	hypothetical protein	NA	NA	NA	NA
WP_075609053.1\|418721_419009_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075609052.1\|419024_419594_-	recombination protein NinG	A0A2I7RR86	Vibrio_phage	1.8e-44	48.1
WP_075609051.1\|419594_419813_-	hypothetical protein	A0A2I7RXB3	Vibrio_phage	6.6e-08	45.9
WP_139316234.1\|419805_420261_-	hypothetical protein	NA	NA	NA	NA
WP_139316233.1\|420233_420911_-	hypothetical protein	NA	NA	NA	NA
WP_170669002.1\|420907_421084_-	hypothetical protein	NA	NA	NA	NA
WP_083638395.1\|421080_421659_-	adenine methylase	A0A2I7RGA2	Vibrio_phage	9.8e-67	63.2
WP_075609047.1\|421640_421925_-	hypothetical protein	NA	NA	NA	NA
WP_075609046.1\|421921_423361_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	2.4e-90	44.3

DBSCAN-SWA_2

430041 : 435990

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_170669004.1\|430041_431043_+	hypothetical protein	A0A0U4B0I3	Pseudomonas_phage	8.3e-29	54.3
WP_083638393.1\|431039_431468_+	hypothetical protein	K7PMJ0	Enterobacteria_phage	1.1e-06	45.9
WP_075609033.1\|431464_431677_+	hypothetical protein	NA	NA	NA	NA
WP_139316231.1\|431683_431866_+	hypothetical protein	NA	NA	NA	NA
WP_075609031.1\|431948_432236_+	hypothetical protein	NA	NA	NA	NA
WP_075609030.1\|432228_432987_+	recombinase RecT	A0A2H4IZU8	uncultured_Caudovirales_phage	6.4e-50	43.7
WP_075609029.1\|432983_434675_+	YqaJ viral recombinase family protein	A0A2H4J6P1	uncultured_Caudovirales_phage	4.7e-85	45.2
WP_075609028.1\|434674_434950_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075609027.1\|434959_435202_+	hypothetical protein	A0A2H4JB60	uncultured_Caudovirales_phage	7.6e-13	51.9
WP_075610035.1\|435447_435990_+	HNH endonuclease	A0A1S5SAI9	Streptococcus_phage	5.5e-27	40.5

DBSCAN-SWA_3

3129035 : 3137439

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075610690.1\|3129035_3130055_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.6e-88	48.6
WP_075610825.1\|3130057_3130354_-	hypothetical protein	NA	NA	NA	NA
WP_075610689.1\|3130460_3131978_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.1e-96	41.2
WP_075610824.1\|3132205_3133294_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	3.7e-83	44.4
WP_075610688.1\|3133311_3134172_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	1.1e-26	33.1
WP_075610687.1\|3134190_3134739_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.8e-49	53.3
WP_075610686.1\|3134741_3135626_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.5e-94	58.4
WP_075610685.1\|3135635_3136748_-	capsule biosynthesis protein	NA	NA	NA	NA
WP_075610684.1\|3136779_3137439_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.8e-09	25.9

DBSCAN-SWA_4

3907601 : 3968657

uncultured_Mediterranean_phage(25.0%)

bacteriocin,holin,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075609639.1\|3907601_3908579_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_075609638.1\|3908696_3908966_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_075609637.1\|3909373_3910156_-	hypothetical protein	NA	NA	NA	NA
WP_075609636.1\|3910469_3912020_-	bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein	M1HHT1	Paramecium_bursaria_Chlorella_virus	4.7e-07	25.0
WP_075609635.1\|3912311_3912986_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_075609634.1\|3913366_3914308_+	diguanylate cyclase	NA	NA	NA	NA
WP_075609633.1\|3914883_3915447_+	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA
WP_075609632.1\|3915531_3917124_+	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	8.8e-41	34.3
WP_083638473.1\|3917588_3918683_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_075609631.1\|3918859_3921058_-	YgiQ family radical SAM protein	M1QSD9	Pseudomonas_phage	1.2e-101	72.1
WP_075609630.1\|3921255_3921726_+	EVE domain-containing protein	NA	NA	NA	NA
WP_075609629.1\|3921840_3924252_-	hypothetical protein	NA	NA	NA	NA
WP_075609628.1\|3924484_3925120_+	hypothetical protein	NA	NA	NA	NA
WP_075609627.1\|3925116_3925926_+	DUF3307 domain-containing protein	NA	NA	NA	NA
WP_075609626.1\|3925974_3926481_-\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_097349239.1\|3926775_3927150_+	hypothetical protein	NA	NA	NA	NA
WP_075609625.1\|3927520_3928708_-	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_075609624.1\|3928724_3929885_-	NnrS family protein	NA	NA	NA	NA
WP_083638469.1\|3929887_3930127_-	hypothetical protein	NA	NA	NA	NA
WP_075609622.1\|3930278_3931847_+	nitric oxide reductase transcriptional regulator NorR	NA	NA	NA	NA
WP_075610087.1\|3932171_3932579_+	azurin	NA	NA	NA	NA
WP_075609621.1\|3933509_3933824_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_075609620.1\|3934266_3934671_-	SRPBCC family protein	NA	NA	NA	NA
WP_075609619.1\|3934933_3936190_+	2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_075610086.1\|3936214_3936691_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.4e-26	46.1
WP_075609618.1\|3936864_3937293_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_075609617.1\|3937292_3937637_+	RnfH family protein	NA	NA	NA	NA
WP_075609616.1\|3937639_3938119_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_075609615.1\|3938152_3940162_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	1.3e-25	26.3
WP_075609614.1\|3940453_3943093_+	TonB-dependent receptor	NA	NA	NA	NA
WP_075609613.1\|3943360_3945325_+	sulfotransferase	NA	NA	NA	NA
WP_075609612.1\|3945361_3946174_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_075610085.1\|3946367_3948740_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	3.7e-176	38.1
WP_139316247.1\|3948920_3949100_-	hypothetical protein	NA	NA	NA	NA
WP_083638468.1\|3949148_3949274_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_083638466.1\|3949295_3949445_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_075610083.1\|3949764_3952809_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_075609611.1\|3953063_3953306_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.8e-07	53.1
WP_075609610.1\|3953308_3953725_+	preprotein translocase subunit TatB	NA	NA	NA	NA
WP_075609609.1\|3953721_3954513_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.1e-51	43.3
WP_075609608.1\|3954686_3956120_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_075609607.1\|3956193_3956757_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_075609606.1\|3956877_3957297_+	DUF4826 family protein	NA	NA	NA	NA
WP_075609605.1\|3957313_3957772_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_075610082.1\|3957852_3958998_-	hypothetical protein	NA	NA	NA	NA
WP_170669086.1\|3959049_3960258_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_075609603.1\|3960321_3961695_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.0e-109	45.3
WP_075609602.1\|3961709_3962336_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_075609601.1\|3962335_3963457_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_075609600.1\|3963632_3964181_-	rRNA large subunit pseudouridine synthase E	NA	NA	NA	NA
WP_075609599.1\|3964613_3966839_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_075609268.1\|3967287_3967722_-\|transposase	IS200/IS605 family transposase	A0A0H3UZM0	Geobacillus_virus	6.8e-12	28.8
WP_075609597.1\|3967912_3968131_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.7e-17	61.5
WP_075609596.1\|3968336_3968657_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.8e-12	46.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage