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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023720 Rhodococcus sp. H-CA8f chromosome, complete genome 4 crisprs csa3,RT,Cas9_archaeal,WYL,DEDDh,cas3,DinG,cas4 0 0 1 0
NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 2 crisprs c2c10_CAS-V-U3,cas6e,cas5,cas7,cas8e,DEDDh,RT,csf1gr8,csf4gr11,csf2gr7,csf3gr5 0 10 1 0

Results visualization

1. NZ_CP023720
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023720_1 214611-214724 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023720_2 4014543-4014628 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023720_3 5836601-5836692 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023720_4 6096601-6096705 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3828755 : 3836355 9 Paenibacillus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP023721
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023721_1 84720-85176 TypeI-E NA
7 spacers
cas8e,cas7,cas5,cas6e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023721_2 110708-110867 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023721_1 1.1|84749|32|NZ_CP023721|CRISPRCasFinder 84749-84780 32 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 84749-84780 0 1.0
NZ_CP023721_1 1.2|84810|32|NZ_CP023721|CRISPRCasFinder 84810-84841 32 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 84810-84841 0 1.0
NZ_CP023721_1 1.3|84871|33|NZ_CP023721|CRISPRCasFinder 84871-84903 33 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 84871-84903 0 1.0
NZ_CP023721_1 1.4|84933|34|NZ_CP023721|CRISPRCasFinder 84933-84966 34 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 84933-84966 0 1.0
NZ_CP023721_1 1.5|84996|31|NZ_CP023721|CRISPRCasFinder 84996-85026 31 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 84996-85026 0 1.0
NZ_CP023721_1 1.6|85056|31|NZ_CP023721|CRISPRCasFinder 85056-85086 31 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 85056-85086 0 1.0
NZ_CP023721_1 1.7|85116|32|NZ_CP023721|CRISPRCasFinder 85116-85147 32 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 85116-85147 0 1.0
NZ_CP023721_2 2.1|110733|20|NZ_CP023721|CRISPRCasFinder 110733-110752 20 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 110733-110752 0 1.0
NZ_CP023721_2 2.2|110778|20|NZ_CP023721|CRISPRCasFinder 110778-110797 20 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 110778-110797 0 1.0
NZ_CP023721_2 2.3|110823|20|NZ_CP023721|CRISPRCasFinder 110823-110842 20 NZ_CP023721 Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence 110823-110842 0 1.0
NZ_CP023721_1 1.2|84810|32|NZ_CP023721|CRISPRCasFinder 84810-84841 32 NZ_CP017303 Rhodococcus sp. YL-1 plasmid pYLL1 sequence 292739-292770 1 0.969
NZ_CP023721_1 1.3|84871|33|NZ_CP023721|CRISPRCasFinder 84871-84903 33 NZ_CP015205 Rhodococcus sp. 008 plasmid pR8C2, complete sequence 42268-42300 1 0.97
NZ_CP023721_1 1.3|84871|33|NZ_CP023721|CRISPRCasFinder 84871-84903 33 NZ_CP025960 Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence 20183-20215 1 0.97
NZ_CP023721_1 1.7|85116|32|NZ_CP023721|CRISPRCasFinder 85116-85147 32 NC_007486 Rhodococcus erythropolis PR4 plasmid pREC1, complete sequence 55022-55053 3 0.906
NZ_CP023721_1 1.7|85116|32|NZ_CP023721|CRISPRCasFinder 85116-85147 32 NZ_CP042916 Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence 53237-53268 3 0.906
NZ_CP023721_1 1.7|85116|32|NZ_CP023721|CRISPRCasFinder 85116-85147 32 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 468252-468283 8 0.75

1. spacer 1.1|84749|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaaattatcgatgtagtgacgaagcaactt	CRISPR spacer
ggaaaattatcgatgtagtgacgaagcaactt	Protospacer
********************************

2. spacer 1.2|84810|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgttcattgcaggtcctcacatatctgcatgc	CRISPR spacer
tgttcattgcaggtcctcacatatctgcatgc	Protospacer
********************************

3. spacer 1.3|84871|33|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtcaactcgtttcttacgacatccgaagc	CRISPR spacer
gagcgtcaactcgtttcttacgacatccgaagc	Protospacer
*********************************

4. spacer 1.4|84933|34|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tctcgagctgcggccgagggtgaatcgtcgtctc	CRISPR spacer
tctcgagctgcggccgagggtgaatcgtcgtctc	Protospacer
**********************************

5. spacer 1.5|84996|31|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tccccaaagcctgcgcagaatgtctgcccgg	CRISPR spacer
tccccaaagcctgcgcagaatgtctgcccgg	Protospacer
*******************************

6. spacer 1.6|85056|31|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ctgcacttgagctcatcaccggcggactccg	CRISPR spacer
ctgcacttgagctcatcaccggcggactccg	Protospacer
*******************************

7. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
aggacatctcgtttccgaagatctcgatcgac	Protospacer
********************************

8. spacer 2.1|110733|20|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcgcggtgctgcactggtgg	CRISPR spacer
gcgcggtgctgcactggtgg	Protospacer
********************

9. spacer 2.2|110778|20|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acatacgactgcctcacccg	CRISPR spacer
acatacgactgcctcacccg	Protospacer
********************

10. spacer 2.3|110823|20|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcaaacgactgctccccgaa	CRISPR spacer
gcaaacgactgctccccgaa	Protospacer
********************

11. spacer 1.2|84810|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 1, identity: 0.969

tgttcattgcaggtcctcacatatctgcatgc	CRISPR spacer
tgttcattgcaggtcctcacatatctgcatgg	Protospacer
******************************* 

12. spacer 1.3|84871|33|NZ_CP023721|CRISPRCasFinder matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 1, identity: 0.97

gagcgtcaactcgtttcttacgacatccgaagc	CRISPR spacer
gagcgtcaactcgtttcttacgacatccgaatc	Protospacer
******************************* *

13. spacer 1.3|84871|33|NZ_CP023721|CRISPRCasFinder matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 1, identity: 0.97

gagcgtcaactcgtttcttacgacatccgaagc	CRISPR spacer
gagcgtcaactcgtttcttacgacatccgaatc	Protospacer
******************************* *

14. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NC_007486 (Rhodococcus erythropolis PR4 plasmid pREC1, complete sequence) position: , mismatch: 3, identity: 0.906

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
aggacatctcggttccgaagaactcgatcgag	Protospacer
*********** ********* ********* 

15. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.906

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
aggacatctcggttccgaagaactcgatcgag	Protospacer
*********** ********* ********* 

16. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.75

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
tggcccgctcggtgccgaagatctcgatcgcg	Protospacer
 ** *  **** * ****************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 170314 : 177413 13 Mycobacterium_phage(37.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage