CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	2 crisprs	c2c10_CAS-V-U3,cas6e,cas5,cas7,cas8e,DEDDh,RT,csf1gr8,csf4gr11,csf2gr7,csf3gr5	0	10	1	0
NZ_CP023720	Rhodococcus sp. H-CA8f chromosome, complete genome	4 crisprs	csa3,RT,Cas9_archaeal,WYL,DEDDh,cas3,DinG,cas4	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023721_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023721_1

84720-85176

TypeI-E

Consensus_repeat	Method
TCACCCCCGAGCACGCGGGGATCAACCCG	CRISPRCasFinder

7 spacers

cas8e,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP023721_1

>merge|NZ_CP023721|1|84720-85176|CRISPRCasFinder
TCACCCCCGAGCACGCGGGGATCAACCCGGGAAAATTATCGATGTAGTGACGAAGCAACTTTCACCCCCGCGCACGCGGGGATCAACCCGTGTTCATTGCAGGTCCTCACATATCTGCATGCTCGCCCCCGCGTACGCGGGGATCACCCCCGAGCGTCAACTCGTTTCTTACGACATCCGAAGCTCACCCCGGCGTACGCGGGGATCAACCCGTCTCGAGCTGCGGCCGAGGGTGAATCGTCGTCTCGCGCCCCCGCATACGCGGGGATCATCCCATCCCCAAAGCCTGCGCAGAATGTCTGCCCGGCTCACCCCGCGCACGCGGGGATCAGTCCACTGCACTTGAGCTCATCACCGGCGGACTCCGCTCACCCCGCCCTCGCGGGGATCAACCCGAGGACATCTCGTTTCCGAAGATCTCGATCGACTCACCCCGCCGTCCGCGGGGATCAATCGG

>NZ_CP023721|1|1|84720-85176|CRISPRCasFinder
TCACCCCCGAGCACGCGGGGATCAACCCG	GGAAAATTATCGATGTAGTGACGAAGCAACTT
TCACCCCCGCGCACGCGGGGATCAACCCG	TGTTCATTGCAGGTCCTCACATATCTGCATGC
TCGCCCCCGCGTACGCGGGGATCACCCCC	GAGCGTCAACTCGTTTCTTACGACATCCGAAGC
TCACCCCGGCGTACGCGGGGATCAACCCG	TCTCGAGCTGCGGCCGAGGGTGAATCGTCGTCTC
GCGCCCCCGCATACGCGGGGATCATCCCA	TCCCCAAAGCCTGCGCAGAATGTCTGCCCGG
CTCACCCCGCGCACGCGGGGATCAGTCCA	CTGCACTTGAGCTCATCACCGGCGGACTCCG
CTCACCCCGCCCTCGCGGGGATCAACCCG	AGGACATCTCGTTTCCGAAGATCTCGATCGAC
TCACCCCGCCGTCCGCGGGGATCAATCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023721.1\|WP_097388364.1\|81263_82634_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP023721.1\|WP_097388361.1\|78701_79511_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|378243
NZ_CP023721.1\|WP_097388368.1\|87239_87455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388366.1\|85980_86223_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388365.1\|82670_84674_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|227226
NZ_CP023721.1\|WP_157920655.1\|76310_76685_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388363.1\|80709_81264_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	unknown	unknown	gnl\|CDD\|378191
NZ_CP023721.1\|WP_097388356.1\|75025_75223_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388369.1\|87470_87704_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388373.1\|89032_89299_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388367.1\|86344_86665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388357.1\|75352_76018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388371.1\|88267_88627_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388360.1\|78012_78705_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_CP023721.1\|WP_097388362.1\|79507_80674_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP023721.1\|WP_097388374.1\|89516_89831_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_157920656.1\|76905_77550_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388370.1\|87756_88266_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_157920657.1\|90802_93436_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350768
NZ_CP023721.1\|WP_097388375.1\|89968_90460_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379154

Protein	Function_ID	Function_description	E-value
NZ_CP023721.1\|WP_097388364.1\|81263_82634_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.69741e-24
NZ_CP023721.1\|WP_157920657.1\|90802_93436_-\|hypothetical-protein	gnl\|CDD\|350768	cd18010, DEXHc_HARP_SMARCAL1, DEXH-box helicase domain of SMARCAL1. SMARCAL1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, also known as HARP) is recruited to stalled replication forks to promote repair and helps restart replication. It plays a role in DNA repair, telomere maintenance and replication fork stability in response to DNA replication stress. Mutations cause Schimke Immunoosseous Dysplasia. SMARCAL1 is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.4529e-31
NZ_CP023721.1\|WP_097388365.1\|82670_84674_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	1.49576e-47
NZ_CP023721.1\|WP_097388363.1\|80709_81264_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	0.00311073
NZ_CP023721.1\|WP_097388362.1\|79507_80674_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.56136e-74
NZ_CP023721.1\|WP_097388361.1\|78701_79511_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|378243	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.	2.56584e-34
NZ_CP023721.1\|WP_097388360.1\|78012_78705_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.13082e-26
NZ_CP023721.1\|WP_097388375.1\|89968_90460_-\|hypothetical-protein	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	0.000214228

>NZ_CP023721.1|WP_097388365.1|82670_84674_+|DEAD/DEAH-box-helicase-family-protein
MSGISATVQDMPTAAPRFQLHPHQQQSLRQLTEAWDQGYARVTLSLPCGTGKTVVMAGLLENLSAPSHRTVVFVPTVRLLVQTANILRAARPGARLIAVCNDRGATTDEFTPATAEEREREIDIEPADAAAELDTDITTDPERIAELLTQGGNNALVVATYASSAVVAAATELASITWDLLICDEAHRTAGTADKAWALPLDNNALPSLRRLFATATIRAVEPATDTDSELGPIEVLSMTSVADYGPTIAPLSLRDAITDRRLSDYRIATIAVAEEAALELLEKEADTNHLDPQAAAAQLALMRAADTNPDLRSVMVFHNRIDTSRAWATQFRALAKTTDKNVRVFHVDGGSDPRHVTAALNALAAPGDDLVVVSNCRLLSEGVDVPALDAVMFAAPRTGAPDIVQIVGRALRPHPDGHHRTALIILPVLHRPHDTTSTEDRVARTDYLTAWQVLTVLAEEDEIIFTSLADHRRAIECATPPPGPESRIRFDTTGLPANIDDGFILKTVRRTTSGWLRVHHALQQQAMRGNSLNPRPTLTIPDPHNPNGYPLGQRVAALRKAKAAGRVPTRIITLFDNDPLLTGWSWDARTATAARLSTDDKLDLVEKYITATRIPHVLPSATVDDTSSGKRVKIGAWLATLKLSSLTPQQRQRLHTLLPTQFSGPN
>NZ_CP023721.1|WP_097388364.1|81263_82634_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLTEPWIDVFTLDGPQTLSLAEVVVNRGDIRDVASADPLEDVAILRMLMAIDLASEGDPINWLHGTAGKWNLFDTAAPFWQNTQLREHVGERTVSPAVTLSYRYAGNGTVLLDHRHNESQTRLTPVEAARALMMRQQFSVGGIQSFPETIFKIRTGPKITDLKGLKSAKAAIAVPRPFAWIDAGNLADTLIVNRRPGPIGTFHHSWPGGNPGDAPDLGGQADALTWQGRSALLIPDLDGYVTGISMTDGLRYGEDTDPQLLPHTTFKQKKAGEPFTAWDVHADRPAWRQLLAAYASIDAPGVLAADLPADGQMRLAGLASFQSRIDGPVTGSLPVPTITRGDVTVLGAGVDDVRKYVVGRVIAGGRVVAPSSTPTSPGAWWKRNMPTDSRMNSDMEPIVRRALTGEITLDDAIGEMYTLADTVVAEFSSTIAQASPTAAAVATTPPAPKKEAVS
>NZ_CP023721.1|WP_097388363.1|80709_81264_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTDLDLADTTPATRYITSLGAAVKSNDRALAALRTWRPSNAVNVDIIRITSRADDDQWIAWALAGKLFARWHTGRASIRYGTPATGLGHGLRNLGARGSRGPNNPGAVRLLDRLLAAGNDTALADVLDAIGRELRTLDYPPQWATIVDEISAWRNTDTRKDIQITWARQFSTYQPNPAANAAES
>NZ_CP023721.1|WP_097388362.1|79507_80674_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTTALAPFLGLHVLHAVPASLLNRDDAGAIKKITIDGTPRARVSSQSWKRAIRTGIRTEAIDGGAYGLRTTRFPKLTAEALTANHGIDPDRAAAVSAALFTRLGLKANEKTGNTSVAVFASEALPTRVAAALAEHDADIVLVTDPDEEADESKKKTAPKLNIPDAVLTAARAALDVDNTIDLALFGRMLAEIPGSNVDGAVSVAHAFSVDPLALEADFFTAVDDAAGPGEAVSSMLDTADLAAPTLYRYVELDRRQLRSNLAGYSQDESVVEELALTAEARFVEWVVRSIPSAKKRSSAAHTLPILVLADTGRAVYSLADAFSPAIQGDNVAAKASERLLRHSTAARPFTGGTTTALAINPTIADDLDFTGVDRADDLGDFIARVRR
>NZ_CP023721.1|WP_097388361.1|78701_79511_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTATVTFRLAGPQQAWSTRERNAHRPTQDHPTKSGIVGLVANALGRDRADDITDLAALQLAVRADRPGIIESDYHTAGSGNFPLLPAEALADPTLARAAAKGLPLVRAYSAPKNIRRDSKGNLVGKRENAVQTTDAYLADAAFTIALSGPHTLVEEICAALTAPARSLHLGRKAYPLSAPPAPVVHPVEHPADALALIPPAQALPHHTIWIEETPTRGRRSPNTQLVVDQPTQFDTRRTVGRLETRIATATTTTDAPTIDFFAPEEQP
>NZ_CP023721.1|WP_097388360.1|78012_78705_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTVADTLTLHTSYLTLDARHRTVRDALVDTHLMHQLVMSGWREDIFPGEGEPRAELGILYAVSLSADHRVRLVVQGHTPANWQLAPGVLLGEVDHRARQAPLDGTIAFQLIAAPRKSLPCPPADSGKKRRGKKIAVPAEEREQWGRKALTAAGLEVATLDVRSGARLESETKSLPRNQRATPNAVFTHTTVVYTGTARISDPALHAAALTGGVGPAKAYGCGLLLTRAA
>NZ_CP023721.1|WP_157920656.1|76905_77550_+|hypothetical-protein
MSYDLWLLPAEHCSDAIAARAFVLAQDKADEPATQTASALAADISAVNADLPEELGFLSVTPLSGIGAAVMIPSPWRRIQDARDVLVPRAFAVDYGVYDPQLDMVLSPHRSVAGKVSTSREATFPTITPEVIDRFVKTMKVDDFVIVETSAEVYIQTTRTSLGGFDVEYRAGSADQHFGTEVITAKEVVGMMKAWLASGSAGVTDQHSWTKLDL
>NZ_CP023721.1|WP_157920655.1|76310_76685_+|hypothetical-protein
MSYRAARDAVLAAKSVTPQQAALSRDERLLQQYCASETDVDMQASIDASSPAAESDETALGIGRAGRKVDYLGMFARNEMWEDKRRTLADLRLLDESTRSLFGFGKSFISAARIADLHAPGSDE
>NZ_CP023721.1|WP_097388357.1|75352_76018_+|hypothetical-protein
MTTTVDPKAIDRELAEISERRWAVLDRMNRVYTAIHYAVDDVRQKRSGWRMTNTEACARLTELCEDPKNFRARDAAKNLTSLDNCNSELAAINDEFDRTEAPYIREPWSRFYLVQGGHIHATRSCHTLHTTTRLGWLPDLSGDTEEAAVTEHGPLLCTHCFPSAPVEWTIGPTKKTDPSQCDNKIRGDWYTRGRYAHCPECGAVASTTSIGNLRKHKRPID
>NZ_CP023721.1|WP_097388356.1|75025_75223_-|hypothetical-protein
MDDIEKIAKAAAAYKNAEQRLHAKRAELRTAIRESSPDTTRQVDIIKVTGWSREHIRRIRNGDLS
>NZ_CP023721.1|WP_097388366.1|85980_86223_-|hypothetical-protein
MSDKPEIGKITHATGIAGQHSYSVPVTYPGEDTDVVQFVGNTAGGPIVMISGTGAQTFVTDPERFGEFSPEWVRRFYESA
>NZ_CP023721.1|WP_097388367.1|86344_86665_-|hypothetical-protein
MSDPDFTVTRTDLAKIVDKRDIEAAQTWTHGGTAVAIVHHGDTRPDVLTSDLAEIIYENLNGLGDKRRSGDVVADFTQIIADLEPVTDDKFDGTHITYWRNVGILA
>NZ_CP023721.1|WP_097388368.1|87239_87455_-|hypothetical-protein
MIQRSAIQLSEGDVIVAEDGQRHTVTKIQNHGLEGAWLTIITDTGIKLDKSHVAAQLDVYDVEPAGAASPS
>NZ_CP023721.1|WP_097388369.1|87470_87704_-|hypothetical-protein
MSNAPIEKCPECESQDLTWEVTSRVDQSLHVRPRVLAVLGCNECSETLALIDSDVIANFLNEERTEHGHFLESADRQ
>NZ_CP023721.1|WP_097388370.1|87756_88266_-|hypothetical-protein
MTSTSKAVLAEINTWIEVMTFPETEPLQIPEPAAVVATALEHFSADFTSSPTAVGEALDNIACRRWGEGDIAAWNAEKSWNIGKQGYRGDAIGLLLGLGIGIGKGQSGPELIASGVDEYEAHCEREGADSGERRWNEKWAKETIDYLSDPASARAALTRTDLLTVDDYT
>NZ_CP023721.1|WP_097388371.1|88267_88627_-|hypothetical-protein
MKYIPATIPADLAQTRVGILWAAANIAVEEPYIDDAIAEAARRAGILGEMSYRDAETSAVTVAQARVPSAPLNPQWPSARWNTWQDAIDEVWPILADAAAKQQGSDDLKIGLVPGRWEA
>NZ_CP023721.1|WP_097388373.1|89032_89299_-|hypothetical-protein
MSENKQRVTSLVANYIVNEGDTDPEGSARISEVAAGLANGGDSAKVREYVERIVRTHASGFTREVRDELSGSDWSDVDWDEVARQLRD
>NZ_CP023721.1|WP_097388374.1|89516_89831_+|hypothetical-protein
MSSATREQDLLDIVAAAHRARAAGAVEQSEPDDHGNTIVSYARADGTVFLEKQAVIGGWSIVHLAEDGGYRSTTRGPFGEDPATDSWIDTAWAEVTRILTAATL
>NZ_CP023721.1|WP_097388375.1|89968_90460_-|hypothetical-protein
MTALPSRIPQNYVTVAQASEARDRAVAEVTNGLEDHAGTGRSRKKRNVDAVVEAMTIYGVDYREIADAAGVSGLAILEYLAQSFEGGSSGEGVAEQVYHAGLTAERAALEAYRDQVIEAQRVEVLRLVEEGVMRTHIARQLAVSRTTVRDWVAAEHPDRGGED
>NZ_CP023721.1|WP_157920657.1|90802_93436_-|hypothetical-protein
MTTTDAHWGTLHEAVSILAGACDYAYERDGAGFSSADAGIGHFIAEVPLAEWILEYVLTSQKLVRKYRRQLTGHPALDLINHKFVPATDTMTDEDIEAVYIGAREVARRGGEVHRARTRIAAGSSVHVDGTTVALSFPYDEELIEESRAIPGRSYDRETKANHYPLTSLSAVIAFADRHGIRVDDETRTLATAVDANPRAYADPNVTVDGKAFKIVCPFVDGLAPALRTLNGNKATWDGPSRSHRLSLTCDRGAFAALLGKFDLVADDDVVTLLGLTAVEPHVTLDGSALLIAATSGINDAVYDLRGSNRVTTVNGALRIGTHVAPAELLAHFTTAGLRLGDGVAEALANEIDTQARNRASATAETGTAVAVPGLGVDLFPHQHPAVQHIVDHRRLILADDMGLGKTITALASVAAADSFPVVIACKPDLISNWHKESARALPGRKIYTAAGMTARDIPADAEIVIIGFTALAALAERRTRTAADRYTWVEKIVEFGPQAFIVDEGHLGKNETAARSQAMAKIGPAVAAVDGLVLDLSGTPLVNRPRELAQQLVMLGYLAEEGETATDAHLFGEFGGFLYRYCGPVKNDHGTTFKGHSNLAELHDRLKAWGLYIRRDESALDLPPFSIRMLELDPALLDPDVMEEYREAEANVLAYILGSIQKEAKAKGAEPTAEMARAVISAQKAVHLVKQNHLRQILGRAKLPAVKALVAEQVSAGEKVMIAAHHADVVGEYADSFGGLTIRGGQSAAEKDDDKLAFQTAPLTDAPVITVSIGAGGVGHTLTAARIGVQAELCWTPGELKQMAKRIHRIGQDRPVDYIVPVVPNSNDTLMWAMLGGKQLVLDAVIDGVELSEDRDEEDGAVAIAMAMAQTALANA

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Crispr_ID: NZ_CP023721_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023721_2

110708-110867

Orphan

Consensus_repeat	Method
CGGCTGCTCTACGTACGACTGCTCC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP023721_2

>merge|NZ_CP023721|2|110708-110867|CRISPRCasFinder
CGGCTGCGCGACGGGAGAATGCGCAGCGCGGTGCTGCACTGGTGGCGATTGCTCAGCGTAGGACTGCGCAACATACGACTGCCTCACCCGCGGCTGCTCTACGTACGACTGCTCCGCAAACGACTGCTCCCCGAACGGCTGCTCTACGTACGGCTGCTCT

>NZ_CP023721|2|2|110708-110867|CRISPRCasFinder
CGGCTGCGCGACGGGAGAATGCGCA	GCGCGGTGCTGCACTGGTGG
CGATTGCTCAGCGTAGGACTGCGCA	ACATACGACTGCCTCACCCG
CGGCTGCTCTACGTACGACTGCTCC	GCAAACGACTGCTCCCCGAA
CGGCTGCTCTACGTACGGCTGCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023721.1\|WP_097388388.1\|102535_102835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388405.1\|124443_128586_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274858
NZ_CP023721.1\|WP_157920668.1\|122854_124309_+\|type-VII-secretion-protein-EccB	unknown	unknown	gnl\|CDD\|368288
NZ_CP023721.1\|WP_117435016.1\|106352_107720_-\|type-VII-secretion-associated-serine-protease-mycosin	unknown	unknown	gnl\|CDD\|274856
NZ_CP023721.1\|WP_157920665.1\|117717_118401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_157920662.1\|101034_101952_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379414
NZ_CP023721.1\|WP_097388399.1\|116616_116931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_157920666.1\|118397_119354_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372237
NZ_CP023721.1\|WP_097388389.1\|102899_103994_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_CP023721.1\|WP_157920663.1\|111391_113605_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340860
NZ_CP023721.1\|WP_097388385.1\|100432_101023_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_157920664.1\|113597_116195_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315512
NZ_CP023721.1\|WP_097388387.1\|102212_102497_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388391.1\|104814_106356_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274857
NZ_CP023721.1\|WP_097388393.1\|107719_109198_-\|type-VII-secretion-integral-membrane-protein-EccD	unknown	unknown	gnl\|CDD\|274855
NZ_CP023721.1\|WP_157920667.1\|119403_120909_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP023721.1\|WP_097388403.1\|120925_122776_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_CP023721.1\|WP_097388390.1\|104004_104319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388394.1\|109216_109507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023721.1\|WP_097388398.1\|116220_116610_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023721.1\|WP_097388405.1\|124443_128586_+\|hypothetical-protein	gnl\|CDD\|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	8.90033e-149
NZ_CP023721.1\|WP_157920668.1\|122854_124309_+\|type-VII-secretion-protein-EccB	gnl\|CDD\|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	2.29836e-120
NZ_CP023721.1\|WP_117435016.1\|106352_107720_-\|type-VII-secretion-associated-serine-protease-mycosin	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	5.02574e-86
NZ_CP023721.1\|WP_157920662.1\|101034_101952_+\|hypothetical-protein	gnl\|CDD\|379414	pfam14011, ESX-1_EspG, EspG family. This family of proteins contains the the EspG1, EspG2 and EspG3 proteins from M. tuberculosis. These proteins are involved in the ESAT-6 secretion system 1 (ESX-1) of Mycobacterium tuberculosis which is important for virulence and intercellular spread. Proteins in this family are typically between 254 and 295 amino acids in length.	0.00338243
NZ_CP023721.1\|WP_097388393.1\|107719_109198_-\|type-VII-secretion-integral-membrane-protein-EccD	gnl\|CDD\|274855	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD. Members of this family are EccD, a component of actinobacterial type VII secretion systems (T7SS) with ten to eleven predicted transmembrane helix regions. [Protein fate, Protein and peptide secretion and trafficking].	2.61062e-25
NZ_CP023721.1\|WP_157920663.1\|111391_113605_-\|hypothetical-protein	gnl\|CDD\|340860	cd05844, GT4-like, glycosyltransferase family 4 proteins. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to glycosyltransferase family 4 (GT4). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0.000216174
NZ_CP023721.1\|WP_157920666.1\|118397_119354_-\|hypothetical-protein	gnl\|CDD\|372237	pfam12642, TpcC, Conjugative transposon protein TcpC. This family of proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologs from Tn916, Tn5397, and CW459tet. This family of proteins is found in bacteria. Proteins in this family are typically between 302 and 351 amino acids in length.	1.15795e-05
NZ_CP023721.1\|WP_157920664.1\|113597_116195_-\|hypothetical-protein	gnl\|CDD\|315512	pfam12846, AAA_10, AAA-like domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	1.34561e-16
NZ_CP023721.1\|WP_097388391.1\|104814_106356_-\|hypothetical-protein	gnl\|CDD\|274857	TIGR03923, T7SS_EccE, type VII secretion protein EccE. This model represents the transmembrane protein EccB of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccE1, EccE2, etc. This model represents a conserved core region, and many members have 200 or more additional C-terminal residues. [Protein fate, Protein and peptide secretion and trafficking].	1.95701e-17
NZ_CP023721.1\|WP_097388389.1\|102899_103994_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.50096e-20
NZ_CP023721.1\|WP_157920667.1\|119403_120909_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.62202e-07
NZ_CP023721.1\|WP_097388403.1\|120925_122776_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	4.68111e-113

>NZ_CP023721.1|WP_097388394.1|109216_109507_-|hypothetical-protein
MTEIPDAEQIARDIRTNLDMLEEERAAVDAATAVREKAEKDEVAAQQAYNESIEEVRKGGLLTDALLERFNHPVPKRPGRPKKPAGKPAGASAASA
>NZ_CP023721.1|WP_097388393.1|107719_109198_-|type-VII-secretion-integral-membrane-protein-EccD
MLTNTIRDTHVRVTVQVPDHTVDVTLARDPALAITIKKLVTYIANALANKDDEKALEWVKDQNAVWQLTNLTSDHLSSSMSLKDHGVLDGDYLMLVKSDQREAYPALIDDVAESIAFAQRNMTSWTSAFARTLASFIAPLVALVGVGIVVYGGWTGELDTIGQASACGVLAVLGAGLLIGAGFGIRGAVDATARNLVAALILVGYVCVGGAGLLAFPGTVDMFSVIVGALVLTTCAIVGLMTIGKPSRLHYAVATFGALILIGCLLAIATERDPLVFAVLLSASALLFLVFAPRLSLVLAGIPMPFVPTMGETFVHENSDDITTVDSSSSSAAITAIHNQEHKVLSAYDCLVGMTWGGLSTFVISAVVAGANMDHHQSAVMVFYVVIAAVSLFRGKSFEDAVSSRSWIVAAATTYAAFVLTLAVSGTNYSYALIGLGVLGAGTAMGCYVSIREKIVNSPVLLKLLELVESIMFAMPIVLIVVILDGYNKVRG
>NZ_CP023721.1|WP_117435016.1|106352_107720_-|type-VII-secretion-associated-serine-protease-mycosin
MIRRAAAVAGAVGVLLATAAVPAAAVEPPDIPGIPLTTPDDPNPAPSVPMVQKTACATSATLAGSEFTRATPANVAFGVENLHRYATGKGITVAVVDSGVSPGVRLPRLTGGGDYITTTNGLEDCDHHGTLVAGIIGAAPASTDGFVGVAPDASILSIRQTSSAYEPADKGPDAPAGGSSTLATLARSIVRAANSDVDVINLSITACYPTDQFVDTSDVAAALKYAVEVKDVVVVTAAGNSGSDACKSNPGYDPANGGDPRNWNGVEHVSMPSFYAPLALSVGGTTLTGEAYTGTMAGPWVTVAAPAVDIVSLDPTKGDNGGLTNATVGKDGPRAISGTSFASAYVAGLAALIREMHPDLTAREVMDRIRNTAHTPGSGDRNLIGEGVVDPIAALTSTTADIPAATASPSYQAAGAPGTDVETLIRNITIIAIGGVCILGLIVAVAYRMLREDRS
>NZ_CP023721.1|WP_097388391.1|104814_106356_-|hypothetical-protein
MIKLTNTTAPVAVAVGTVAVLAIGALPGDSVARPIIAAVAALVILSILVAPGGKSTVNRFRRRRHFARPDRFLSLLYATLRVGTVWDGQALSMFVALRPVPFRVAVVGANETGLESRSLPLELIRDHLIQGDVNLESIRVIASGYRAYGDSAYGQAYTSVVGQTAIPDTLQTVIEIRVNLRKSYQSVLARATNGSIPTGIGKAAHIVSRRLEQNLNIEGFSAKVLRRNEIRDFHDMMLAPMNDGLRDERWTHLGGAVPTVTAAPTEWSELAVERWLGVPADRIAYVLEIANDRHRQATVGLTVAYSYSKATKMPARALSLRANDGEHGDHATAMLPLAQTVSSPAPTLTVPRGSAFPVSLPAYGLGVYLGPWADGAGRVFLNTDTSGEVLWLETPEAFVQQLAARITTTGARVGVYIDTPQWSDLANRVLGLRLSPTEPVDVAIYQGRPPSQVPASTVVIVWAPEGVPSAVASAHRITADENSVMTVVSRTSRAKFHWEAPIAELPFVTSLRG
>NZ_CP023721.1|WP_097388390.1|104004_104319_-|hypothetical-protein
MTAVGMASVAGVQAGASAVSAIEGQVSGTHELVHAVAAAIVPPTQDSASYLASVRQGTNVEGFSNALRAGLAQQQGLAQVVGSAATTTAIQDELNAAAATAISV
>NZ_CP023721.1|WP_097388389.1|102899_103994_-|PPE-family-protein
MGAEPWGLYPPEINSGRYDAGIGPATWFAGAVEWAAFAGLVAEAQAALGVQVGSITGQWEGLASQKTSAAAVPFITWLHEMGGIATLNAQRNFAVVQAYATGRAAMVPTPVIIANRIAARTAQVLGAMGAVNTEMVRLEIEYASFWTHNAGVMTSYDAAVTAATAPTPIPPPPPLVVDAVPGGGIQGQLQNLAQQAGGANPMGMGRSMMQGIPSQYAGPSLNNSSSLARVLGSGAGTGAAFGGRGASMGGGGAGAGARGAGGGMSGGFSGLLTPPLTAFNAPNMGVGGGAGSAFGGVQNAASVARPAAPMMPPMGRGSQLQKDVEERDRETIIAADQEFADTLVKTPNEAAKFGEEISVPAHLR
>NZ_CP023721.1|WP_097388388.1|102535_102835_-|hypothetical-protein
MSTPVKLSAPDARAIAAELLSGNDQLEASSKALASIASDLSVAGMQGEAGRAVARKQEELTQRAGELIKTSREQAEGLNNYANLVEQTQAEDAAAANAV
>NZ_CP023721.1|WP_097388387.1|102212_102497_-|hypothetical-protein
MTINYNPGQIEAALAAVDGQAREFEDGAARIEAGFKRLADLSEGVAIQAATDTQNKSNALRQETKANVLTLKATAQASLDKVRSQDQQYSGIIA
>NZ_CP023721.1|WP_157920662.1|101034_101952_+|hypothetical-protein
MTHAMLTSLHLARLSQFYPHPLAELGPNITEVPDDVASIVDQQLVAASLLDTRGALTEQARSLLDPLFRYENAFTAVILLHNQRQQVTFDLDEMWMEYMRQSLPSTPRVYVVVAASGPTTVTAVRAGEHVDLSMSATGDPLALVAARELLRVGDPDKQWSPAKIPAVSFPAELLNRAPARSPLPDSDDTQAQRDHKLTVSRFADALRKAEIPSRTIMAVEKFLQLDHIAATHIAYIGGAQRMLSEGTTTIDYFHNAGVSVGGVQKTGDGNLWKTLAPATVEEVRKSLTFLSRLPARPMLSALAGY
>NZ_CP023721.1|WP_097388385.1|100432_101023_+|hypothetical-protein
MKSFLATRIRNVAIVKIVIICAIVVGSLGAVFMVFSLILSAVFAPVEAVQNAVSSFFGSEDSADSDDDQAVNLQACLPITAVALEEVVETVPPRTDVETAWAWIAWRSQEIANGIDPAAYDSIIAFANSTAGQMVTQTVDTDPATISETYTSSAQTGYTLAAITGIVDLTQRGILTAADDDTVTELSAVLADQCSS
>NZ_CP023721.1|WP_157920663.1|111391_113605_-|hypothetical-protein
MSNPLVDFIDLADKYGTQVSRFGVDFSGSLSTLIWRAPTELIVMFVQLLLTYSIWIVDLIINKGLFLEVAGSVYQSLLDTIYQYVNPLYIAVIAAMILFARMFIGDKVLTTEKNGGRISGFELNNSTLGGDEAFRKKITSEVMNSAVLLFIIIIAMANPFTLLVKVFSGITWFVGSLAPQSTGASPQVDGFLAPMLQVINFQEVLAPACGESWSATLAGGGNVSKLSCLTASEKAATTADHVTLGLAIVSILMAAGFIYFSWIILMRFSWMLCTMIVNVAVVPWQAAMLMASPGNERKKLNAVKDRFLEAAKSLAWLIITVVVASAVPAALITAVSSTNMPAVITMLISSALFFLAGKFANKYIGRRFKRDKDGNRIEITDSGATGWNDFRQNGGMGKWLAEPFNEAQKASKAELAMSEAIINGTSETHSQSTTQKGPTVDQPVVDPALDEAVKTVDLTTKQPAVILDSVAGKMLTSTAPNGVDTVTEVQPAAGPMSSAEFAAAATSALIAEANGHAETQMSGAKADAFTDPTSLTGGGDIGAGAVAGMAAATAAGAVATRVSGYPGTAGDDSGGRHHRNDGETPNGAAEAVAAVVALDPEAERRQTIANYLDAIEQISVDPDAVEDTSVTTTITTHDVDTTAFHRVAKVYSETAEPGEVDPISDGVVGRSGEFLSTVSSDVQWQEYKTLAKSMGMNIEPPPNESTEERPNITFYSSTVDGKNEVRYRGRGGFGDAI
>NZ_CP023721.1|WP_157920664.1|113597_116195_-|hypothetical-protein
MGDYLTPVREVRGNLIYTADGRIWANYHLSGINVSAYQGTSIANGQARNKDLFHNLSQIGSGDMLLLGIKAKTSPEEFVDRMLKGIPDIADGRHGALAAHVDAFFQQMQRGKLEEFQRLYILSIEIPTAASGTSGTVAKLNGTDPFASIDRNYIARLETQIFDLLPDAFEPARTTPLMLQWVHERMRLRGIEVPSAPPRENTTPISPKGFGNVIIDKAADTRAVLDEFLEAVDSGAVRATPKRKLGRLRENYGSIRYGQQLSISNPEQRTNSLPDGPTSYQTLMAIGGWPTTPKNALNTFTYLVDQQIGVDADFALRFSFSQDAISLTETRQFLKTLAGENEANSVDEFDAQAYGDRGRERRLLQSQVSEEKGPRGMEVAAIFAFAHPHRLTLTKQVAALKETFRGNGFEPFVPVGGQFELLNMMMPGSSCTPMGTELKGTTTVHTFSACLPLRTSHVGDLQGLPIAINMENALGQIILHDYLGGTEGGNGSIACTGEQGSGKSYFQKMLAGHMSDLLCPAWVIDQSEHGEWVVYAQQLGGVDVIDAMAPQYSLDPLKVLPMERAGKLFVDLMLPLLGLSPMSKDASILANALTPANRKGHGIHSSRDLIDYLEKTADGQQLATGLAFYASQEYTRTLFDPIGHDGGVRRLPAFAPSRDRAVVFRTHGISVHKGDVTPTTEPSKQFGRVLYTAIAAYTAYVFSQSRDLNAFIADEVSFLQGSSVLEDLVRTPDRVGRKAGNIVVAGSQLAKDLQDGNYDQIRKKFAFRQTIRENAIAALQWMGIPATELMIEKMMVDTSPGDKKNNNRAIRGREGEGWYRDGSGSIARVKVLPQASARRHRFSDTTTSSMIRIEDATRATVGGHV
>NZ_CP023721.1|WP_097388398.1|116220_116610_-|hypothetical-protein
MRHFRVYNRVRAVGVTFPVAGNHIGIGSAAILGVIVAATAALAAFASFVAGTIALGFVVFIGFVILLTAFFAIVKLTQMGNLREGTQLSLIRDAMRERRVKNFQTPDVDGDINDDFDLLTDSNSVYRNH
>NZ_CP023721.1|WP_097388399.1|116616_116931_-|hypothetical-protein
MDTIGAEDAFAVIAQGITASGSDIDFTKIAMWVAGILVGAVVLVATWRLFKNYLSSGQNGAVVAPEDRAKQTASIMIDAGIAMAAILVVIPFVTWVAKFITDKM
>NZ_CP023721.1|WP_157920665.1|117717_118401_+|hypothetical-protein
MRLYMSSPQGTSMNLARNMERVARLYGKGFLDDASTVWINSDVRAPAFWTLAARPSCVLWVSAPSSGTVRLTKDRIRWAATYNDTSKAPAIDVSVSTLPVDSIKHVTVVVEHGHPTEPVQVIDGTDSVKMVDGFYQGHEAAVLDLNNFVPTEGERTLPTYATSLAFVHGTNLLTTGMGKKMVTEFEENIERHGIDLSPIMLNQLVEAAETFNVTARLLTEQISSQST
>NZ_CP023721.1|WP_157920666.1|118397_119354_-|hypothetical-protein
MSIIDRIRIAVPVAFKRVKSAPSGMFTEASLLRTIKRNTFIGYVTVVAVLLLFLMVVLKPTPQIPDTTREFTTMQRVQFFSTNFLTVWLTGTERDAPTVKQMVSDTSALPTKWGTEPVEISDVSVADLTRSDPGGVGTEWWVKLGVTIVPPNNGASQRLYYLVTVIEQDEALRALTMPRLVDHSRPGVDLSPNFDSNVSVTSSLGTTVNSFAQAYFTAGEGTLGRFVSSSFTGAPIPNSPYSSADALVVRTKGSVNVDQYEVGAALKILVTVRAGFSLTTFHTMDVPMTVHRTDNGTWQIDSVDSVVEVSKNQLVPGN
>NZ_CP023721.1|WP_157920667.1|119403_120909_+|hypothetical-protein
MSRPLSDDERRSINVNKIDDALAAFASTPIDELDADKWMADLDDALTPGHTRRPLEVPDEPVVRTPKRSMHHEVGGDDDADEDVQHLPTWDDDDVVSDTQSTVDDGARVGVGTPEPDDAIPPPPENPAADEEFAAEQVPDNYLPTLSSALDRNAESVDPGLQLSAGFRDLLARRPSAPPSNDFYGNEYGSVDNDSHAAATPPPSSLAPAPPVSAPPAHNDPYAAAPNSASTSDDTAAIPTIDTPGAPAAPPPIPLRGARTDKPSAPSGVLGALRERFTTMSPGRRKAVKFLAPAAVLVGIIVGVNSCIPDEKAPPPPAAAATPGAGAPATTTGAATAIPVPESAVGVLAPSAVSAKCPEGSTDARFAFTADKSQAWICKRALGIDGAVMEITFPYAVVISDVFLTPGFDYIEPSGIDRWIEHRTVSRVQWSIGNQRFIQEINPSRTGANMPIPEVKTQKITLTIMATAEPTGAVNRGFGAAAGAKDDSFAISLIRITGHQP
>NZ_CP023721.1|WP_097388403.1|120925_122776_+|AAA-family-ATPase
MMNATMDEKQLVETHYQALRFLFEGNSTAAREHFVYAISEQTLECDTFRGLAACSTGRFATDEQIQAIYLTRKSFGDLTYKAFQHESREYNVQLRERKLTTPEPECIYQTKFFGVDIPIHFVDNLCAAAAASYMNGDRYDRALKALDGAGDKPSVHLMRAALYYRTSRWMDLIPAIEPLRNAAIVDEYGATVVDPQGAAVPNVLFHELAYLLLHTAQTHLGNSDNSKEVFDTLTKSRFTAVSGEAHRMLGMIARTNGDEKTAQQHFAMGVALSRSDELLRVQGDRTEYLRITNADLISRRESYWDVSTEPSLEMEQRTELDTHRSDLLAKGKAELARQIGMSNVKAQIATLENTLRINAEFKKRNLAVAERTNHLMFVGPPGTGKTTIARVVTDIFGGTGVCRLPKIVEVSRQDLVAEHWGASGPKTQAMIDKALGGVLFIDEAYNLVQTTDGQKDPLGQEAVDALLKAMEDNRDDLVVIIAGYEKELNQFLNTNDGLTSRFNTTITFETYSPEEIADIAEVIATSRSLILDAAAKVSIVDAVQDMVGVTDDKRKKLIDKAGNGRFARNIIEKAEGYKNSRFAGAQELGRLSSEEMQTLIASDVESAIAEIRKNLR
>NZ_CP023721.1|WP_157920668.1|122854_124309_+|type-VII-secretion-protein-EccB
MLVRRIEQAFTRRDTRLLSSPFSMQTTAVILGFGLAGLVLAAGFVMGLIKPQPTRGEASIVATQSGGRYVMYNGALHPVTNLSSARLIVGKADAIKTVKDAELEKYPRGLLMGIPGAPDEMIPRTDDTSRWAVCTQYNSATSLDLTPNISTRTLLIAGDPEIVPAQEPISDSEAILVSERDGNTKKTWLLYNGMRSEISMSEKALTSALQVDQDMLDKATPVSAAFLDAVPVREAMRAPRLLRQGQTSTAVPQYQVGAVLSSTGIDGDSMYLVFDNGVQPIGSFTAQVMINNGSKFVDNVSAAQIAAAPHVVGADMDHWPAQRPTLVQKDTVCFDWSRHGQAAADSSLFALNSVPLKSEARDRVVALLPGTDQSPQADFFYTDPGRGWLVQVTGESDGSLAREQLWWVGDNGVRYAITGDSGSSPGDTLTKLGLGDAATQLVPWSVLRLLPEGANLSPNSASVIHEQIPVEMAKNPITNVEGLK
>NZ_CP023721.1|WP_097388405.1|124443_128586_+|hypothetical-protein
MIAMMLGFVGLMVTQSGSFSIYMLMMPMMMLMGLTSMLGGAGGGGTSELNADRRNYFLDIRERRTLAHRNGEAMFTAQEMSFPQPARLTQLIGSDDKNFQSMWAVWAANPGGFVTKEGTEDEKAYRPYLAARIGRGTVELEPLIVTKELAVAEQIEPVTLGAYRGFHRTQRFVPGFPIAYHLGRSPFHSFEGADARVLPLVRAMVASLAFNHSPDRLELVLITDDPDGADWSAFKWLPHANDPTRMTPDGSARRIYRSLADFVNDLPESVSERPAFRDNASSSTNEELPYAHMIVLIDLPDAEVRLPELFGVSGIDGITLFVVRAGVNEIPFAEDSALTLDADGKLSTPLEPALITADEMSTAEFDAFARKMSGYRTGRAVVLPGVVDTAPVSTGRTPYLKALGINDLESFDAYEFWKRAAADRERTIPIGDILDETSLLPTGLLADLNLSESSVGGSGPHGSMQGATGTGKSFLLQPMVLSLCCKYSPDQVAFILMDFKGGATFMGFEKLPHVLANITNLERDLDVLQRADIVIRGELNKRQEFFDKHKVPGILEYVKKRAKNPELPPLPELFVIIDEFGEFIVENRDFLKLFSKITKVGRSMGVHLMLASQFIDQTVVGDIQNNLTFGISLAVNNSTASRFVIGSDAAINLQSGKGHAYLRRSGTKDSGLALIQGFPVNAPYVPSAAPTVDIGVSGADVDETTGTDNDVIPFSSISTTTTVIDTDGTVVTVDEPVINPDHYAEEREALLDALIQYQDIQPRTLWQPTLTAPISFHGATLPISDNSGLRIRIGDLDDPYNHQRVPYTIRPEGAGAHIRVVGARGTGKSTTLQTIIASAAQTYAPTQVQFYLIDSGTKLQEMENYPNVGGRASINDDEMIDRIIAEFTRIVSLRTDEFERRRVANYAAYTASKIDEPVPGDHYGEMFLVIDGVNDLLDVRQEGISGTIATQRTAALTKIAAAGGSRGIHLVIAGEMESNKINFYNQFALWILHPSANPNEFTTAIRDRDIRTKYATIPDGQPGRVLEPTVGYHARIYVPQLETIEPIPGSDPIEYDPKADYGDGIRALGERLAAQYVIPTDDGGEIEVRAPKIVTVPHQLEWATVWQIYQQSTLAMGAPRALPLGAAADDLSLVMLPTDDGRAKSHMMIVGDPSSGKTTVVRSLLRSIIEQYTPDEAQIYLFDPGFTMMNESAILSAFGMLARYENQPARIQEAAEDIAEIIAKRQPDLEAVGPQEIAEGTWYSGPKIFVFIDPATTLTSTGSWDAAPTDALNTAIAAQQALGMSMGLQVFATETTNQYMTRRNGSAFYKALISSNADILLLSGTSTEPVAGSYSSADGKIMFARRRPGLGQLYSPSSNSGHPVVQTSFHPPFDPPAQEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023721_1	1.1\|84749\|32\|NZ_CP023721\|CRISPRCasFinder	84749-84780	32	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	84749-84780	0	1.0
NZ_CP023721_1	1.2\|84810\|32\|NZ_CP023721\|CRISPRCasFinder	84810-84841	32	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	84810-84841	0	1.0
NZ_CP023721_1	1.3\|84871\|33\|NZ_CP023721\|CRISPRCasFinder	84871-84903	33	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	84871-84903	0	1.0
NZ_CP023721_1	1.4\|84933\|34\|NZ_CP023721\|CRISPRCasFinder	84933-84966	34	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	84933-84966	0	1.0
NZ_CP023721_1	1.5\|84996\|31\|NZ_CP023721\|CRISPRCasFinder	84996-85026	31	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	84996-85026	0	1.0
NZ_CP023721_1	1.6\|85056\|31\|NZ_CP023721\|CRISPRCasFinder	85056-85086	31	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	85056-85086	0	1.0
NZ_CP023721_1	1.7\|85116\|32\|NZ_CP023721\|CRISPRCasFinder	85116-85147	32	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	85116-85147	0	1.0
NZ_CP023721_2	2.1\|110733\|20\|NZ_CP023721\|CRISPRCasFinder	110733-110752	20	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	110733-110752	0	1.0
NZ_CP023721_2	2.2\|110778\|20\|NZ_CP023721\|CRISPRCasFinder	110778-110797	20	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	110778-110797	0	1.0
NZ_CP023721_2	2.3\|110823\|20\|NZ_CP023721\|CRISPRCasFinder	110823-110842	20	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	110823-110842	0	1.0
NZ_CP023721_1	1.2\|84810\|32\|NZ_CP023721\|CRISPRCasFinder	84810-84841	32	NZ_CP017303	Rhodococcus sp. YL-1 plasmid pYLL1 sequence	292739-292770	1	0.969
NZ_CP023721_1	1.3\|84871\|33\|NZ_CP023721\|CRISPRCasFinder	84871-84903	33	NZ_CP015205	Rhodococcus sp. 008 plasmid pR8C2, complete sequence	42268-42300	1	0.97
NZ_CP023721_1	1.3\|84871\|33\|NZ_CP023721\|CRISPRCasFinder	84871-84903	33	NZ_CP025960	Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence	20183-20215	1	0.97
NZ_CP023721_1	1.7\|85116\|32\|NZ_CP023721\|CRISPRCasFinder	85116-85147	32	NC_007486	Rhodococcus erythropolis PR4 plasmid pREC1, complete sequence	55022-55053	3	0.906
NZ_CP023721_1	1.7\|85116\|32\|NZ_CP023721\|CRISPRCasFinder	85116-85147	32	NZ_CP042916	Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence	53237-53268	3	0.906
NZ_CP023721_1	1.7\|85116\|32\|NZ_CP023721\|CRISPRCasFinder	85116-85147	32	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	468252-468283	8	0.75

1. spacer 1.1|84749|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaaattatcgatgtagtgacgaagcaactt	CRISPR spacer
ggaaaattatcgatgtagtgacgaagcaactt	Protospacer
********************************

2. spacer 1.2|84810|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tgttcattgcaggtcctcacatatctgcatgc	CRISPR spacer
tgttcattgcaggtcctcacatatctgcatgc	Protospacer
********************************

3. spacer 1.3|84871|33|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtcaactcgtttcttacgacatccgaagc	CRISPR spacer
gagcgtcaactcgtttcttacgacatccgaagc	Protospacer
*********************************

4. spacer 1.4|84933|34|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tctcgagctgcggccgagggtgaatcgtcgtctc	CRISPR spacer
tctcgagctgcggccgagggtgaatcgtcgtctc	Protospacer
**********************************

5. spacer 1.5|84996|31|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tccccaaagcctgcgcagaatgtctgcccgg	CRISPR spacer
tccccaaagcctgcgcagaatgtctgcccgg	Protospacer
*******************************

6. spacer 1.6|85056|31|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ctgcacttgagctcatcaccggcggactccg	CRISPR spacer
ctgcacttgagctcatcaccggcggactccg	Protospacer
*******************************

7. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
aggacatctcgtttccgaagatctcgatcgac	Protospacer
********************************

8. spacer 2.1|110733|20|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcgcggtgctgcactggtgg	CRISPR spacer
gcgcggtgctgcactggtgg	Protospacer
********************

9. spacer 2.2|110778|20|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acatacgactgcctcacccg	CRISPR spacer
acatacgactgcctcacccg	Protospacer
********************

10. spacer 2.3|110823|20|NZ_CP023721|CRISPRCasFinder matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcaaacgactgctccccgaa	CRISPR spacer
gcaaacgactgctccccgaa	Protospacer
********************

11. spacer 1.2|84810|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 1, identity: 0.969

tgttcattgcaggtcctcacatatctgcatgc	CRISPR spacer
tgttcattgcaggtcctcacatatctgcatgg	Protospacer
*******************************

12. spacer 1.3|84871|33|NZ_CP023721|CRISPRCasFinder matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 1, identity: 0.97

gagcgtcaactcgtttcttacgacatccgaagc	CRISPR spacer
gagcgtcaactcgtttcttacgacatccgaatc	Protospacer
******************************* *

13. spacer 1.3|84871|33|NZ_CP023721|CRISPRCasFinder matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 1, identity: 0.97

gagcgtcaactcgtttcttacgacatccgaagc	CRISPR spacer
gagcgtcaactcgtttcttacgacatccgaatc	Protospacer
******************************* *

14. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NC_007486 (Rhodococcus erythropolis PR4 plasmid pREC1, complete sequence) position: , mismatch: 3, identity: 0.906

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
aggacatctcggttccgaagaactcgatcgag	Protospacer
*********** ********* *********

15. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.906

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
aggacatctcggttccgaagaactcgatcgag	Protospacer
*********** ********* *********

16. spacer 1.7|85116|32|NZ_CP023721|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.75

aggacatctcgtttccgaagatctcgatcgac	CRISPR spacer
tggcccgctcggtgccgaagatctcgatcgcg	Protospacer
 ** *  **** * ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

170314 : 177413

Mycobacterium_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157920678.1\|170314_170620_-	Lsr2 family protein	Q854K3	Mycobacterium_phage	1.3e-09	36.2
WP_157920679.1\|170884_171391_+	DUF3710 domain-containing protein	NA	NA	NA	NA
WP_157920680.1\|171741_172080_+	hypothetical protein	A0A1B0UY64	Roseobacter_phage	5.1e-07	44.9
WP_097388449.1\|172129_172456_+	hypothetical protein	NA	NA	NA	NA
WP_097388618.1\|172664_173015_+	WhiB family transcriptional regulator	A0A2P1CGA4	Mycobacterium_phage	6.9e-15	50.0
WP_097388450.1\|173011_173542_+	hypothetical protein	NA	NA	NA	NA
WP_097388451.1\|173688_173946_+	hypothetical protein	G1D0J0	Mycobacterium_virus	1.1e-12	48.7
WP_097388452.1\|174021_174336_+	hypothetical protein	NA	NA	NA	NA
WP_097388453.1\|174884_175088_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.2e-15	58.7
WP_097388454.1\|175087_175525_+	hypothetical protein	NA	NA	NA	NA
WP_097388455.1\|175683_175998_+	WhiB family transcriptional regulator	R9RWH0	Mycobacterium_phage	3.4e-13	55.4
WP_097388456.1\|176658_176982_+	WhiB family transcriptional regulator	A0A159B6S6	Tsukamurella_phage	2.7e-05	41.9
WP_097388457.1\|176978_177413_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A1D6X8A1	Bacillus_phage	4.3e-06	30.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023720

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023720_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023720_1

214611-214724

Orphan

Consensus_repeat	Method
CAGGGTCGTCCGCCGCAAGCCCGACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023720_1

>merge|NZ_CP023720|1|214611-214724|CRISPRCasFinder
CAGGGTCGTCCGCCGCAGGGACGTCCGATGGGTCCACCACCGCAGGGTCCGCCTCCGCAGGGACGCCCTCCGATGGTTCCGCCCCCTCAGGGTCGTCCGCAGCAAGGCCGTCCG

>NZ_CP023720|1|1|214611-214724|CRISPRCasFinder
CAGGGTCGTCCGCCGCAGGGACGTCCG	ATGGGTCCACCACCGCAGGGTCCGCCTCCGCAGGGACGCCCTCCGATGGTTCCGCCCCCT
CAGGGTCGTCCGCAGCAAGGCCGTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023720.1\|WP_042448217.1\|214036_214456_+\|DUF5318-domain-containing-protein	unknown	unknown	gnl\|CDD\|379953
NZ_CP023720.1\|WP_020909716.1\|218800_219100_-\|putative-LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP023720.1\|WP_080910772.1\|224545_225901_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227937
NZ_CP023720.1\|WP_003941245.1\|227027_227270_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP023720.1\|WP_003946014.1\|210777_211341_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP023720.1\|WP_003941248.1\|226463_226988_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
NZ_CP023720.1\|WP_029256732.1\|217220_218798_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NZ_CP023720.1\|WP_003941237.1\|226111_226399_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP023720.1\|WP_042953416.1\|206326_208444_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239201
NZ_CP023720.1\|WP_019746057.1\|215033_217181_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP023720.1\|WP_092765870.1\|213068_213908_-\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP023720.1\|WP_092765871.1\|212237_213059_-\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP023720.1\|WP_092765873.1\|209681_210785_-\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_CP023720.1\|WP_097386651.1\|223961_224546_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP023720.1\|WP_097386649.1\|219287_223130_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225201
NZ_CP023720.1\|WP_092765876.1\|208452_209472_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP023720.1\|WP_092765872.1\|211457_212228_-\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP023720.1\|WP_097386648.1\|204881_206267_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP023720.1\|WP_097386647.1\|204076_204784_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NZ_CP023720.1\|WP_097386650.1\|223136_223916_-\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388

Protein	Function_ID	Function_description	E-value
NZ_CP023720.1\|WP_042448217.1\|214036_214456_+\|DUF5318-domain-containing-protein	gnl\|CDD\|379953	pfam17249, DUF5318, Family of unknown function (DUF5318). This family of unknown function is mostly found in Actinobacteria.	2.64488e-77
NZ_CP023720.1\|WP_020909716.1\|218800_219100_-\|putative-LuxR-family-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	3.4828e-06
NZ_CP023720.1\|WP_080910772.1\|224545_225901_-\|hypothetical-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	3.39421e-11
NZ_CP023720.1\|WP_003941245.1\|227027_227270_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	4.04915e-32
NZ_CP023720.1\|WP_003946014.1\|210777_211341_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	9.82046e-20
NZ_CP023720.1\|WP_003941248.1\|226463_226988_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	4.32435e-98
NZ_CP023720.1\|WP_029256732.1\|217220_218798_+\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	1.36213e-113
NZ_CP023720.1\|WP_003941237.1\|226111_226399_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	2.17904e-41
NZ_CP023720.1\|WP_042953416.1\|206326_208444_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|239201	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	6.58202e-114
NZ_CP023720.1\|WP_019746057.1\|215033_217181_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	2.20726e-160
NZ_CP023720.1\|WP_092765870.1\|213068_213908_-\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	3.07464e-14
NZ_CP023720.1\|WP_092765871.1\|212237_213059_-\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	1.31957e-15
NZ_CP023720.1\|WP_092765873.1\|209681_210785_-\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP023720.1\|WP_097386651.1\|223961_224546_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.57349e-27
NZ_CP023720.1\|WP_097386649.1\|219287_223130_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225201	COG2319, COG2319, FOG: WD40 repeat [General function prediction only].	3.81455e-37
NZ_CP023720.1\|WP_092765876.1\|208452_209472_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.66643e-103
NZ_CP023720.1\|WP_092765872.1\|211457_212228_-\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	1.38756e-15
NZ_CP023720.1\|WP_097386648.1\|204881_206267_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.13777e-112
NZ_CP023720.1\|WP_097386647.1\|204076_204784_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	1.02053e-40
NZ_CP023720.1\|WP_097386650.1\|223136_223916_-\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	3.70717e-16

>NZ_CP023720.1|WP_042448217.1|214036_214456_+|DUF5318-domain-containing-protein
MRIQRQVVDYALARRSVLAEVSAGRTDVKQVCDADPYLLRAAKFHGRGSDVVCPICRKEQLTLVSWVFGDKLGQVSGSARTSDELARLAETAEEFTVHVVEVCRTCSWNHLVQSYVLGAVPAPPRPRRARPPSRRTASE
>NZ_CP023720.1|WP_092765870.1|213068_213908_-|DUF1707-domain-containing-protein
MTRARDLDRVETCNVLDAAYAEGQLSAEDYFERTEKARSAKTLLELARLVNDLQVPKIDTTTAPRTSVTRKAVYIGGAALIVVGAVAAVAWSRSPLTPSEDITASYASTTSLAPPLPTTTLVLEPTVEPILIAHIDTLTPEGIGAFIERYREEFGDMFVDGASFHEKHSSVQRAAPGAPAQTQRISFWGGFQIEPNNTPRRSDQPTFDLGSIQIDKLTPFMENIGEFIKVPDATITAVILNASYGVPEIAIYAENIHGEDGRIEVTPWGEISRSYPYGS
>NZ_CP023720.1|WP_092765871.1|212237_213059_-|DUF1707-domain-containing-protein
MSGSPTTTSTRTRARDVDRSDTCAVLDTALSDGQITVDEHANRTAAAMTATTLGQLDLLVRDLQKATLRNAVAKVRRIDKIWYLAAASTIFAGLIGYLTLSADPSPPPPPPAAAENVEPLAPIVSSTLNTVTASGIGEFITKYSTKYGTTIIDSVNFYDGYASVTRAAAISPNLEEDIDFRGGFTPRESTSTRAASTVTFDLAAVDIDKLAGYLAGASANLNVPDAEITHISMSSSSDDPRVSIYVSNNLGASGWMDLTPDGRPIRLSPFTPR
>NZ_CP023720.1|WP_092765872.1|211457_212228_-|DUF1707-domain-containing-protein
MPNDLTRTTRARNADREATCAVLDSAFADGQLTATEHDELTELAAVAVTLGDLEDLTSDLQTEASLPVLRKEPSLDTRLIALAIIALSLVSAIGFGIKYVASDVTIFSSPEPQLHTVDGLGAMFRAIETEYGSGLVDEMTIYPTYARVTRADPAAQRKSLDSYYRGDLEDTTSGGSREPGVTQIDVTQLDPRIVIALLDGAGTTTSVQNPTTRYVSVGSAETVPTIEIHVGNDLDESGYLTAGLDGEIMSIYPFTP
>NZ_CP023720.1|WP_003946014.1|210777_211341_-|helix-turn-helix-transcriptional-regulator
MLELAILGLLLESPMHGYELRKRLTGLLGAFRAFSYGSLYPALRRMQADGLISEDVDTATGTLKRRARRVYQLTPEGRQRFTELVADTGPQNYTDDGFGVHLAFFSRTPAEARMRILEGRRRQVEERREGLREAVGRASGSLDRYTRQLHQLGLESSEREVRWLNELIAAEQSTTGTSRKEGEPDHG
>NZ_CP023720.1|WP_092765873.1|209681_210785_-|inositol-3-phosphate-synthase
MGENSTAVRVAIVGVGNCASSLVQGVHYYKDADETQTVPGLMHVKFGKYHVRDVQFVAAFDVDAKKVGFDLSEAILASENNTIKIADVPPLDVPVQRGPTLDGIGKYYAETIELSDAEPVDVVKALRDAQVDVLVSYLPVGSDDADKFYAQCAIDAGVAFVNALPVFIASDPEWAAKFKDAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVVLDRTYQLNVGGNMDFKNMLERDRLESKKVSKTQAVTSNLTGALAGKVHDRNVHIGPSDYVEWLDDRKWAYVRLEGRAFGDAPLNLEYKLEVWDSPNSAGIIIDAVRAAKIAKDRGIGGPVYPASAYLMKSPPVQMADDKARIELEAFIIGADEA
>NZ_CP023720.1|WP_092765876.1|208452_209472_-|isopenicillin-N-synthase-family-oxygenase
MSITSLPVLDLSLAQNPDTAEQFRTQLREATHEVGFFYLVGHGIPDELQRRLLAVAREFFALPTAEKLAIENVRSPHFRGYTRLGGELTEGKQDWREQIDIGAEQPAAERTDTSPAWEILQGPNQWPDALPELRDVITEWNDTLTSIALSLLREWAVALGQDANIFDDAFAHDPSILIKVVRYPGRPKGAGSQGVGGHKDAGVLTLLYVEPGKGGLQVEHDGDWIDAPPIDGALVVNIGELLEVATGGYLKATVHRVVSPEGDGERISVPFFFNPNYAAQIPEFDLPPELASRATGVTVDANNPIHDSYGANALKSRLRAHPDVAARWWPDIVAAQSAT
>NZ_CP023720.1|WP_042953416.1|206326_208444_+|FAD-dependent-oxidoreductase
MTIRSQTFPHLLAPGTIGPMTVPNRVVLPAMDMNLCEDGEIEKGDIDHFVARAAGGTGLIITGCCAVAYPLGCTSRKEPGLSEDRFIPGLKALADAVHDAGSKLCVQMTHHGKVARIDTLDGRPQLVPSTPKPPGDMSAMADCTPEELGKMAAINEGKRATYHEATKEDLDWLVRMFAEAAGRVKAAGGDAVEIHCAHNYVLGAFLSRYTNQRSDEYGGSMENRARLACEVIRAVKEEVGGALAVIVRLAGQEYGETDGLTVDEAAAAAKMFEEAGADAIHVTGTALNAFANFTDGPLPDKVGYYTDNATRIKQAISIPVITVGRMLPEVGEKMIAEGRTDFAAMGRQLLADPQLVNKLKDGVPERVRPCINCYVCVQENFWDETPLCAVNPALGNEALLPFVRTSTPKHVVVVGAGPGGLETARVAAERGHRVTVLDKSDRLGGTLWFSSLTTPDNGRLLSWLKVEIERLGVDVRLKTEATVASIRALNPDAVVVATGAVRERPSVPGGDLPHVHTGDSLRALMTGAGDVSQVPPFLRTMAKLGKLSGITKSPAAIRAVTRKFLPMGKDVVVIGGSLVGLELAEFLAERGRNVTLIEEGQQLGIPMAMPRRWTAVRHAKHVGVDIHRNSTVQRITKEHVEFRSGDKTLTAPADMVVVASGVSAQAPLADALIGVVSDVHVVGDAVNVDYIEGAMHTAWKVAMDL
>NZ_CP023720.1|WP_097386648.1|204881_206267_+|PLP-dependent-aminotransferase-family-protein
MFLPSAVAVVLDRTDRRALPIQIADHLRADIRSGKAAVGLRLPSSRKLAAELEVARGVVERAYEQLIAEGWLVAVHGSGTFVAEAPSPAVTPTTTPKKAADKMSPRVQLRPGVPWTPPRASAAWRRAWRDVGSKPPPFEDPDPAGDYELRSALSELLARARGMSVEPERILITSGATHGLGLALSALRTRGAVLAMEDPGYRYASSAATACGWSLLDVPVDAHGLCVDQLETASEGVRGVYVTPSHQYPTGGLLPVGRRNQLIEFARARDVVLFEDDYDSEFRYDVAPLPALAQLAPDRVVYLGTVAKTLGAGIRLGWLVAPLDLVDRIAVHRKRIGDFPSVPLQQALLSLLRDGEWDRAVRTARRRYRERDRAVEEALSSFGELRGLGAGMHTTLMLDADLAATVAREALEHGVEVPTLVESTRTHGDPGGLVIGYGRVESADLEYALEVIAGCLARHSA
>NZ_CP023720.1|WP_097386647.1|204076_204784_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTDSVVFAAPAPAPTAPIPLSPTARTTHKRARHHGVAERAALVDVLQSAKLCHMGVNVGGVPMVFPTAYGFDLDGPDRGGSIYVHGSVASRSLAPDSEICITITILDGLVLARSGFHHSMNYRSGVIIGSPRVVTDGDERVKALNLIVDQVVPGRSQHLRDHTRKEMAATIVLALPLYEASVKARTGGPGDDAADIGVETVWAGVVPAATHFGEPLPSEDLDSGVALPDHISTML
>NZ_CP023720.1|WP_019746057.1|215033_217181_+|penicillin-binding-protein
MKKKSKWRTVRRSAYVLVALGLVLPVLAFMAAYIVQDVPKPGDLKTNQVATVFAADGTTVISTVVPPDGNRVEVSLDQVPLHVRNAVLAAEDRDFYSNPGFSISGFARAARDNVLGRDSAGGGSTITQQYVKKALVGSERSLTRKMKELVISSKMANEWSKDDILAAYLNTIYFGRGAYGIGAASKAYFGKPVDQLTIEEGAVLASSIQLPSLLDPETNPTGAKSRWDYVLDGMVSAGTLDQAARTPMQYPAYIPLAQVDNSSQGSTGPEGLIKRQVLKEIGDAGISEQLLNTEGLQITTTIDPQAQAAAVEAARSNMEGEPENLRTAVVSVDPKTGAVKAYYGGEDGAGYDFANAGLQTGSSFKVFGLAAALDQGIPLSQMYDSSPLTVNGISIGNVEGESCGTCTIAEALKRSLNTSFYRQMLSLDGNGPQAIADIAHQAGIPKDIPGVGPSLTEADGSGPNNGIVLGQYQARVLDMASSYATLAASGTYHAPHFVQKVVAADGTVLLDRGAPAGEDRIDAAVADNVTAAMQPIAAYSRGHNLAGGRLSASKTGTAQLGDTGANKDAWMVGYTPSLSTAVWVGTPDGEAITNSGGAMIYGSGLPSDIWKDTMDGALDGTDNEKFPTPGKINGQAGGVPEYTAPAPPKTSAPPTTAPTTTETTPPPVVTTTQVEVLPGITIPIPGISRPTTTTPQVPGAGETTEEEPAGVSPGQ
>NZ_CP023720.1|WP_029256732.1|217220_218798_+|DUF2029-domain-containing-protein
MAANADDAEPTSPAPLAEDLRSADWRDVPSRNDAMVSALSGTVGGPVGRHALIGRTRFFTPMRVILLLAVVFLAFGWFAKAGCIQQAPVGESGQVGLDWSGSRQYVAMCYSDTVPLYGAERLDQGAFPYKTSWEEVRGDGSIQMRYMEYPVISGLYQYGAMKVAKAWDSITWLPGAIQVALYFNVVAFGLALAWLVTVWASTLLAGRRVWDGALIACSPLVIVHVFTNFDPLATAFAAGGLLAWARKRPVLAGILLGLGGAAKLYPLLLLGPLFVLCLRAGKTRDWLVTALSAVAAWLAVNLPIAALYPHGWYEFFRLNSERGADPDSLYNVIASFTSWKGLDGPLAQGESPSNLNAVSLLLFVAVCIGVGYVALTAQRRPRVAQLCFLLVAGFLLTNKVWSPQYSLWLVPLAVLALPHRRLLLAWMTIDALVWVPRMMYYLGVSNKGLPEQWFTGTVVIRDIAVLVLCALVLRQIYRPSEDLVRYGFIDDPAGGVLDQAPDKQPAWLPGWLKPSKAKEPETVAV
>NZ_CP023720.1|WP_020909716.1|218800_219100_-|putative-LuxR-family-transcriptional-regulator
MSSIGFSPKIEANVSRVGNPKHGKHKPKLSVREIEVLLAWLRSDSKSEVAETLGLRVCTVNTHITRVRTKYSDVGRPAPTKAALFARAVQDGYTTLDEW
>NZ_CP023720.1|WP_097386649.1|219287_223130_+|helix-turn-helix-domain-containing-protein
MNSKAEAGRRNQVDPGQIESRGQFAEALTALRKAAGLTVREAVERSGGLHGTVSGWFAGQHLPTPASTPMFFALLEACGVDSEDERQRWIGAVQRVRQLTARRRGDATVPYRGLESFRQEDAEWFFGRDELTANLAQRVASAIRGVGRSQFMVIGASGSGKSSLLRAGLAPKVAEGDSRFDGWRVEILQPGTGGIPSSISDEPTVLILDQFEELWTQCDGDRREEILRTLAELGENTIAVIGMRADFYGLAAEEPLLVPLLDDSPMVVGPLTDEQLREVIVEPAVKAGMTVQSELVQVLVSELTPRGSRTASDPGALPLLSHALLGTWQRSTRKTLTVSDYYATDGIAGAVQQSAEEVYGELTERQQQLARRIFLRLVNVDEVTQTRRRAPRTERFLGDDVDDVNTVIDRFALRRLLTVDEETVEVSHEVLLSAWSRLRDWIDSDRAGLAVHRRFTYAAQVWEDSGRDPGALLGPARLHLTEEWLNSGELGLPLEPSRTRAADLNATEREYLAASIEHRDQQEFADRRRTRVLRRLVTALAAASVIALVLAVVATVAGIGANRQRVQADTARDEAMSRQVATESIRMRERDPSLASQLALAAFAVNETTEARSALLDASGVHSATRIIGPPGAMKARINPAGTVVAVGGSDGKVRLYPMVDGVASAVPQAEFLGVSEGTALFAVAYSPDGRLLATGGAGGAALWDVSDPENPVRGTLPVDGERVVQDMEFSPDGTKLVAGTSTPDVLRWNIDVSANAVALPALPHPADGIVTSTFSPDGRFLVAGGRQSTLRVWDVAKWGEESAPIFATEPNGTTVHYLGVAFSPDGRELAAGTTGREVVRWDMSDPARPTPLPALTGFSSYVNELNYGKDGTRLAAGSSDNSVRVWDPRTGALIETLPDSGAVTTVDYSDDGRNLVTGGLNGVTRVWALPGPVWAGPRDTIFTSPFAADGSRLVAGVGARGGAMLAWNTEDLDRPAVMPELKPQGDDSFSGASAVSADGNLAVSGTGGGGAYLWDLSDPASPRIYSEPAVYVKGIVAVVALNPAGDLLAVSSQDDNSIALVDVSDPSEPKLLSSTDVGSYPQMMAFQPGADILAIANAKNEVDLWDVSNPASPRVAATVGGFESYALAVSFSADGTLLAAGSADHRVAVWDVRTPSAPEELARLLGPEGAIYSISFNRAGDRLAAGVGDGTVWLWDIETPSRSTRFATLSAYPGRVNDAQFAGESDMIAGSGSDKTVRLWGIDPDSVVDRLCRTAGSPITEAEWERYLPGVPYQDPCAG
>NZ_CP023720.1|WP_097386650.1|223136_223916_-|DUF4190-domain-containing-protein
MSDQGGYGYQGNQNLQPAPYGQPDPYGRRPTNTLAVLALVFAFLIAPLGIVFGHIARGQIKRTGEEGDGLALAGLIIGYIFTALGILAVIVWIAFFGLLAAAFGNAANDASSRSFTYTTPYSYSTTTTRAPSAPTTAPKTTTPPRVTTSIGPAPTVSGTDRQGFISGGPSCNSTNPAVAIAVTTGSRIVICETGVGRYYYKGQRLSDGATIELDDPTPTGNGFTVTNKDVTYQLTSAGLVITGSGGELGREPALEFWMN
>NZ_CP023720.1|WP_097386651.1|223961_224546_-|GNAT-family-N-acetyltransferase
MTASWFESPTLTGDRVRLEPLGFAHTDALLAAADDAAIFRWTAAPIADREQAQRYISAALDDPNRIAFAQVNIATNAVVGTTSMYQIDPVNRSLAIGYTWLSRSVQGTGINPESKLLLLRHAFDQLEAVRVEWHTDEFNEQSRAAIAKLGAQFEGLLRKHRRRVDGSWRTTALFAMTDEDWPTIAPQLETRTRN
>NZ_CP023720.1|WP_080910772.1|224545_225901_-|hypothetical-protein
MRTDRKTPASILALVVGLCGLTMALGYFNKARCGGAPFAPDGRSLNFDVNKNIDVCYSDIQLLWLGRGIDQHLFPFVTGGITPEGFLTGGTVEYPVLSGILMWLGGIGSHTDTDFLLHSALILAPFGLLTAWMLGKMSGAYALVWSATPPLVLYAFHNWELPVVATSVGAIFLMTFERIPLRTRAVLAAVILAIGFCLKLYPGMFVLPLMAYVLLRGTEGKRYDVRGALMTAGAAIVTVVLVNLPFALISYEGWRASFSFQEKRSADITTNSVWFWGLRPFYGFGVRELNADYDALVSILSPVMILVSFALAMYLGWRRYVRDGYFPWIAVSAAMLCGFVLLHKVNSPQYTLWILPFLVLFKIRWFWIVAYLIADAALGIGIFRYFYQLDMNLDPSKYEAVVQASVWGHVVLLAVFFFLFLRVPLRYPLAGGTDQIANSDNNLPTHSREHA
>NZ_CP023720.1|WP_003941237.1|226111_226399_+|30S-ribosomal-protein-S6
MRHYELMVILDPSLDERTVAPSLDTFLNVVRQHGGTIDKVDVWGKRRLAYEILKHAEGIYAVIDINATPATVAELDRQLGLNESVLRTKVLRHNK
>NZ_CP023720.1|WP_003941248.1|226463_226988_+|single-stranded-DNA-binding-protein
MAGDTIITVIGNLTADPELRFTPAGAAVANFTVASTPRTFDRNSNEWKDGDALFMRCNIWREAAENVAESLTRGSRVIVSGRLKQRSYETREGEKRTVVELEVDEIGPSLKYATAKVNKANRGGGGGGGNFGGSSGGSGGGRPSAAPSGGDDPWGSAPQASGSFGGAGSDEPPF
>NZ_CP023720.1|WP_003941245.1|227027_227270_+|30S-ribosomal-protein-S18
MPKPPLRDKVMKKKVCTFCKEKNTQINYKDTTLLRKYVSDRGKIRARRVTGNCVQHQRDVAIAVKNSREVALLPYATVAR

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Crispr_ID: NZ_CP023720_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023720_2

4014543-4014628

Orphan

Consensus_repeat	Method
CGGCGGCGGCGCAGCATCCGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023720_2

>merge|NZ_CP023720|2|4014543-4014628|CRISPRCasFinder
CGGCGGCGGCGCAGCATCCGGTGCCATCCGCAAGAAGCCGAAGGCACGCAAGCGCGGCGGCGCCGGCGGCGGCGCAGCATCCGGTG

>NZ_CP023720|2|2|4014543-4014628|CRISPRCasFinder
CGGCGGCGGCGCAGCATCCGGTG	CCATCCGCAAGAAGCCGAAGGCACGCAAGCGCGGCGGCGC
CGGCGGCGGCGCAGCATCCGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023720.1\|WP_020907077.1\|4007103_4008597_+\|acyltransferase	unknown	unknown	gnl\|CDD\|334202
NZ_CP023720.1\|WP_019747751.1\|4002764_4003106_+\|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|379386
NZ_CP023720.1\|WP_020907068.1\|4018788_4020159_+\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP023720.1\|WP_029255031.1\|4014913_4015339_+\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP023720.1\|WP_097387544.1\|4020972_4023684_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182084
NZ_CP023720.1\|WP_003940792.1\|4015338_4015689_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023720.1\|WP_097387542.1\|4017480_4017810_+\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|376352
NZ_CP023720.1\|WP_097387541.1\|4015685_4016048_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227939
NZ_CP023720.1\|WP_097387248.1\|4003886_4005191_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_CP023720.1\|WP_020969193.1\|4016965_4017484_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|184333
NZ_CP023720.1\|WP_019747749.1\|4005255_4006953_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP023720.1\|WP_003940853.1\|4001127_4002768_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP023720.1\|WP_097388211.1\|4020166_4020976_+\|FAD-binding-molybdopterin-dehydrogenase	unknown	unknown	gnl\|CDD\|366378
NZ_CP023720.1\|WP_019747745.1\|4011080_4011497_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NZ_CP023720.1\|WP_007731146.1\|4003121_4003763_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|178901
NZ_CP023720.1\|WP_097387543.1\|4017814_4018792_+\|urate-oxidase	unknown	unknown	gnl\|CDD\|274554
NZ_CP023720.1\|WP_019747746.1\|4010178_4011084_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP023720.1\|WP_041814841.1\|4016048_4016849_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NZ_CP023720.1\|WP_020969197.1\|4011501_4012902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334202
NZ_CP023720.1\|WP_020969198.1\|4008596_4010060_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334202

Protein	Function_ID	Function_description	E-value
NZ_CP023720.1\|WP_020907077.1\|4007103_4008597_+\|acyltransferase	gnl\|CDD\|334202	pfam00668, Condensation, Condensation domain. This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.	7.70908e-18
NZ_CP023720.1\|WP_019747751.1\|4002764_4003106_+\|acyl-CoA-carboxylase-subunit-epsilon	gnl\|CDD\|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	1.60453e-11
NZ_CP023720.1\|WP_020907068.1\|4018788_4020159_+\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP023720.1\|WP_029255031.1\|4014913_4015339_+\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	9.28982e-21
NZ_CP023720.1\|WP_097387544.1\|4020972_4023684_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|182084	PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.	7.08211e-169
NZ_CP023720.1\|WP_020969193.1\|4016965_4017484_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|184333	PRK13798, PRK13798, putative OHCU decarboxylase; Provisional.	1.62172e-66
NZ_CP023720.1\|WP_097387542.1\|4017480_4017810_+\|hydroxyisourate-hydrolase	gnl\|CDD\|376352	pfam00576, Transthyretin, HIUase/Transthyretin family. This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyze the conversion of 5-hydroxyisourate (HIU) to OHCU. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence.	1.09616e-48
NZ_CP023720.1\|WP_097387541.1\|4015685_4016048_+\|hypothetical-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.000362699
NZ_CP023720.1\|WP_097387248.1\|4003886_4005191_-\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	1.2529e-33
NZ_CP023720.1\|WP_097387543.1\|4017814_4018792_+\|urate-oxidase	gnl\|CDD\|274554	TIGR03383, Structure_Of_Uricase, urate oxidase. Members of this protein family are urate oxidase, also called uricase. This protein contains two copies of the domain described by the uricase model pfam01014. In animals, this enzyme has been lost from primates and birds. [Central intermediary metabolism, Other].	2.81278e-135
NZ_CP023720.1\|WP_019747749.1\|4005255_4006953_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.32182e-62
NZ_CP023720.1\|WP_003940853.1\|4001127_4002768_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP023720.1\|WP_019747745.1\|4011080_4011497_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	1.79337e-42
NZ_CP023720.1\|WP_007731146.1\|4003121_4003763_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	2.78195e-103
NZ_CP023720.1\|WP_097388211.1\|4020166_4020976_+\|FAD-binding-molybdopterin-dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	1.88837e-14
NZ_CP023720.1\|WP_019747746.1\|4010178_4011084_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	2.07893e-99
NZ_CP023720.1\|WP_041814841.1\|4016048_4016849_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	1.31192e-76
NZ_CP023720.1\|WP_020969197.1\|4011501_4012902_+\|hypothetical-protein	gnl\|CDD\|334202	pfam00668, Condensation, Condensation domain. This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.	3.26811e-20
NZ_CP023720.1\|WP_020969198.1\|4008596_4010060_+\|hypothetical-protein	gnl\|CDD\|334202	pfam00668, Condensation, Condensation domain. This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyzes a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.	5.16691e-15

>NZ_CP023720.1|WP_020969197.1|4011501_4012902_+|hypothetical-protein
MEFTELADYAIPAGALVEWLPCATGPWVPDPRPVSYIHEAHLNRSAAGAGDKSWLGTAFEISGPLDVDAFRVALGRWIDRHEVLRSHTVLEPSSGEITRHTVPIGGIDIGVVSHGYDASSQDNFDHLHRLFDDYASPHSWPSYVFATLTPRGGDGPFTVFFAADHSIIDGFSIVLVAHEIAALYREASTGSAANLFPVGSYVDFGAVEREQMADMEAEKAAVEIWRKALGTDGLPQFPLPIGERGTDSQNGLSTWLLDAEQSKAFSSTCAAAGVGYFAGLLGGLAAVGREVAGSDQFEVVTPVHTRSAQEWAGALGWFVGLCPVEFAVGSDCSFGDLATRAAESIASVKPAAAVPFDRIGEHLETPIRPRFVVSYMDVRFVPEAAQWPEWNARALRSKAYTHDVYIWINRTPQGLNLAVRYPGNETANAAVHAYVAALRRTVEEIVAEPDTGTSGSYSSVVFETVS
>NZ_CP023720.1|WP_019747745.1|4011080_4011497_+|SufE-family-protein
MSTLPSALAEIVDDFAAVGASDKLTLLLEFSRELPPLPAELEQSAMEPVPECQSPLFLSVDDSDRDNVRLYFSAPPEAPTTRGFASILAQGLDGHSADEILGVPDDFYSALGLAEAVSPLRLRGMSAMLARIKRHLRG
>NZ_CP023720.1|WP_019747746.1|4010178_4011084_+|sulfurtransferase
MPVAPDPSTAFAEFAHPDRLVSTEWLSANLGTPGLKVVESDEDVLLYDVGHIPGAVKIDWHLDLNDPVTRDYIDGAKFAELMNRKGISRDDTVVIYGDKSNWWAAYALWVFTLFGHEDVRLLDGGRDAWIAENRDTAFDVPDITSTDYPVVKRNDAPIRAFKDDVLAHLGDGPLIDVRSPQEYTGERTHMPDYPEEGALRGGHIPSALSIPWAKAAAPDSRFRTRTELGEIYGGLSADDNIVAYCRIGERSSHTWFVLTHLLGYPNVRNYDGSWTEWGNAVRVPIVQGEEPGAVPSSVSAS
>NZ_CP023720.1|WP_020969198.1|4008596_4010060_+|hypothetical-protein
MHVTSIDRYGLEPGIVTEWSLQPADGAVTESEVPPSYNQHFHLETARTHGMGRSVWMAAAFDLPGELNRPALDLALRLFISRHDTLHTGFEVGEFTTTRMGLDPDGTHIETSEPVKFDSTEDLRAHLKKRFTTVCDPLTFPAYTFATVEREEHYTVLSAFDHTLVDGYSLVIALGELRQIYEGLIAIPELTDHEAVDAVMSRLGDPGSFVRYCELEADALLPVDNDPRIREWARFYEICGGTSPSFPLDLGVEAGKPAPQGADVRVLLDEELTAKFDEICLSAGGSVFTGILTAMGLSVHSFTGQATLPLQFPLHIRKDPRWADAIGWLTTSAPITVQITPDADFGASLAHTHASFRVALTLEGVTMAQVRDALGDKIRRTRTDVFMVSYIDYRKLPGTDDHDLLNAHHISNVTVADDAQFWISRTNRGLSLRSRFPDTDTANETMVNFLTDLDRILREVCARGVTPIGSVTEQLRDSSVGAGTPRI
>NZ_CP023720.1|WP_020907077.1|4007103_4008597_+|acyltransferase
MDLNLITHWHPLPGRVIEWGVTHASAQRAAEAEIDRELPPTTMQDRHLRRARVTAEKGDPQSPWIGIAFDFAGTLDRDAMTRALQRYVRRHDTLHSWFSFDEATTDAADTAFEVRRHVVPVESIELEYRVGDDVSESEAIRALVATKFATETSALQWPAFVFGAVEHHHADLEADPSFTLFHAVDHAHSDMNSMVLMYAELRQLYAAETTGSHPELGPAGSYAQFGRVERERTTELTMQSPEVHQWLGYLMRSGGSFPGFPLPLGAEDAPKPAIGSRFDLADDNECERFGAVCKANGANFIGGIFTALAIAEFELAGRDKYIALSPVSTRTEADSFAQGWYINLIPVGIDVDDKRRFTELAKLGQQGYHDGKALLDVSVQQVIDLVLSSLAESDSAPGGLSKTLTPPPIVSYIDGRRMPDPYSYAETKATGIVGGKETQIASMWINRMHTGTWIAVSHPDTPIAHESATRFAEHVSKIIKTVAAQGDYSFSAPEGAS
>NZ_CP023720.1|WP_019747749.1|4005255_4006953_-|MFS-transporter
MLPDPLGDAVGADHKGGRRAGSLTPWLGLATSLAAAFMQLLDATIVNVALPSIAVDLQAGVSAQLLMVSVYILAFACSLITAARLGDLFGRRVVFLTALFVFVAASLLCGLAQSATMLIVFRGLQGLAAGSMSAQTFAIISGLFPKARHPRVFGIYGATIGLATVSGPLIGGLLIEWNLFDWGWRLIFFVNIPIGIAALILGYFHLVDARAEHVRSLDLIGAALSSLALFLLILPLAEGRARGWPTGLVVMLAMSVPVALAFVLYESRLAKRGGDPVLRLELFRDRAFAIGAVLAFVFFGTLTSLIFTISLTLQFGFGFSALRAGVMTLPWAVGMGVAAVLSSAVYRMLGNRVLILGMVVFAGSLIALSVILEHEGTDPRWLALAGPLLLGGAGLGLFVAPLQTAILATVEPAHAGSVSGLLPTVQQVGSSIGLALIGVVFFSLVAGQAPQAVQGERPEYVANLEAAGVNPGLVDIAEKAFVDCATSQLASGTPMEVAPECRREGTAGAGGQSVQVAVDAAYASTRAAAGEAFLEAQRRVLAIIAAIALGIGLASTALPRVNSPV
>NZ_CP023720.1|WP_097387248.1|4003886_4005191_-|HNH-endonuclease
MSVLLSDVVSGSAVGLRGRLWRLTASELRAAAVSASVEILRLEAVRVAVVDELSLRPDDQVIASRGVGCWLAANTMLQVRDGKKIAALGAALRLFPAVAARFDVGDCSFDHAVLIVAFCESPPKGMPEEALPRCIDLLLAAASGVEATTTKVRNVIATLERVFESDEIPPAEDTDRNELRIASTLNGRVVVRGDFDALTGEMLLSALSNLTMPTPAPDGTPDARSAAKRTADGFTELIRRYLDCAKTGFDGGQRPHVNVHINARDLAEHRDCAAAPSPDGGGVAVSDLDVGHMPWLGPLSVSQTRLLGCDCFLSTVLLDDHGAPLDAKPGKRLVSAEQRVALIARDKGCAFPGCACVPAWTDAHHIRHWANGGPTVMSNLVLLCRSHHRLMHRKSGFVGKWVIRIGVDNKPWFIPPPSIDPGQHPRPANTTFKT
>NZ_CP023720.1|WP_007731146.1|4003121_4003763_+|septum-formation-inhibitor-Maf
MTQLVLASASPARLAVLRAAGVSPLVRVSGVDEDKIADNLGPDAAPEKVVTVLAEAKAAEIVPGLAADNLTDVVVVGCDSMLLIDGQLQGKPGSVDIARKRWAAMAGRSATLLTGHCVLRVADGRIVRMASDHSATVVHFAQPSTEDLEAYLATGEPLQVAGAFTLDSLGGWFVERIEGDPSSVIGIGLPLVRTLLERVGVSVSDLWRTQSIF
>NZ_CP023720.1|WP_019747751.1|4002764_4003106_+|acyl-CoA-carboxylase-subunit-epsilon
MTATTEDILSEDVALAETAPTNGAVVEGSATDASLTELTETSTSDASVIKIVKGSPTDVEIAALVSVLAAAAGSGQAPESNVPAETWGDPTQFHRTRAPFSPYAYLNPAIRRS
>NZ_CP023720.1|WP_003940853.1|4001127_4002768_+|acyl-CoA-carboxylase-subunit-beta
MTTVQEPNAPEAAAAPDIHTTAGKLADLRNRQAQAQAPSGEAAIDKVHAKGKLTARERITALLDEGSFVELDALARHRSVNFGLADNRPVGDGVVTGYGTIDGRDVCVFSQDATVFGGSLGEIYGEKIVKVMDLAIRTGRPLVGINEGAGARIQEGVVSLGLYGEIFHRNVQASGVIPQISLIMGPAAGGHVYSPALTDFVVMVDETSQMFVTGPDVIKTVTGEDVTMEDLGGARTHMVKSGVAHYVASGEQDALDYVKDLLSYLPSNNQAAAPRGEITDPIVGSIEDSLTAEDIELDTLIPDSANQPYDMHEVIRRILDDDEFLEVQAERAMNIIVGFGRVDGRSVGIVANQPTQFAGCLDIDASEKAARFVRTCDAFNVPIITLVDVPGFLPGTEQEYNGIIRRGAKLLYAYGEATVGKITVITRKAYGGAYDVMGSKHMGADVNLAWPTAQIAVMGASGAVGFVYRKQLLEAAKNGEDVDALRLKLQNEYEDTLVNPYVAAERGYVDAVIPPSHTRGQIVSALRLLERKAVSLPPKKHGNIPL
>NZ_CP023720.1|WP_029255031.1|4014913_4015339_+|DUF1707-domain-containing-protein
MADVPDIRIGTAEREQALDLLSEHFAAGRLTVTEFDERSGIVSAATTRSELVPVFADLPGNYQAPGTAPLSMVTPPAAPAERRFNPDWSGRVMAVIPILAVILFFVTGTWLWFLAIPLAGALLFGTDRERKAKRRRERGSD
>NZ_CP023720.1|WP_003940792.1|4015338_4015689_+|hypothetical-protein
MEPIEINAGGWYLRALRADERVDDRPALADGGITDPDYVSQRSAQWHENSVYSWAVCQPNTGELLAEVVLTPLDSTALLTGWARDGHTEALTTAADAVTRFAEGALGLVVVEGQTN
>NZ_CP023720.1|WP_097387541.1|4015685_4016048_+|hypothetical-protein
MKNNRYWPLAIAVVIALIMLFSPGSTVPSSPENTDKITHTLMFAVLAITSLHARIPAWLTAVWLVIFAAMSEVLQAALPISRSGSIWDGTADLLGIAIGIGIVSLVMRRRRARDDEPSRS
>NZ_CP023720.1|WP_041814841.1|4016048_4016849_-|tyrosine-protein-phosphatase
MTDTPKLSSVVPSLANLRDIGGPESSFGGTVRTGSVFRSTDLASLSAEGAQTLADLGIVTIYDLRTESERETAPDLTPDGIRELGLDVLADKQYRAIPAQMQQMIADPAFAAEALGSGQALEYFQGSYRDFVTLPSAVASYRQLFVDLAQPPSSPALIHCTTGKDRTGWAAAALLLFLGASEDAVFADYLETNKVLLPMFAPLLERFEAKGIDPTLLEGVLGVRREYLEASMAELAQVHGSIEAYFTDGLKIDASTQEQLRSNLLS
>NZ_CP023720.1|WP_020969193.1|4016965_4017484_+|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MPTTNSSGLGAFDALGDHQAVAALLECCHSAVWAQEIASSRPFTDLEALFDKADAVLAELPESEIDDALSGHPRIGERSESAASTREQSEVSSATEDVLAELRQKNAEYEETFGHVYLVCASGKSGTELLDILRGRLRNDPATERSVLRTELAAINRIRLARLIDSLAGGAA
>NZ_CP023720.1|WP_097387542.1|4017480_4017810_+|hydroxyisourate-hydrolase
MSKTLSTHVLDATTGIPAAGIRVELRDRDGVTITSAETDSDGRIPELAPGGLATGHYTLTFDTGTYFETNGQENFYPEVTVTFRLDDAARGYHVPLLLSPFAYSTYRGS
>NZ_CP023720.1|WP_097387543.1|4017814_4018792_+|urate-oxidase
MTTENITTGNITTGVTSTDRLSGSIELTGHQYGKAENRVVRIYRDTPRHEIHDINVSTCLRGDFADAYLTGDQSKVLPTDTQKQTAYSYAKEKGLISIETYGLELARHFVDDIEPVSGARIEIEEYAWERAIVDGSEHDYTWIRKGQEVRTASITISDTGTVDAGTWVIGGLKDLVILKSTGSEFSGFLEDPYTILEPTDDRVMATTLVAQWRFVTTDVDWESVYVGIKAQIVKQFAQVHSLALQQTLFHIGKAILEEFPIIAEVRLSAPNKHHFEYALGRFGVENDNEVFHAADRPYGLIQAAVSRSDAPDAGPSWTPYSGWLS
>NZ_CP023720.1|WP_020907068.1|4018788_4020159_+|8-oxoguanine-deaminase
MTDPALGTTLVVANAHVVTMDSERSEHPDGYVVISGNKIVDVGAGKAPVYPNAHVIDGNGCLITPGLVNTHHHLYQWITRGLAADSTLFEWLTTLYPVWAGIDADAVHVAATGGLTWLAKTGCTTTTDHHYVVPRDAGDVFEAEITAAAQVGLRFHPCRGSMDLGQSSGGLPPDHVVEKLDDILTGTQSVIDRWHDPNAGSMLQIAVAPCSPFSVTESLLRESATLARENGVRMHTHLAETLDEESFCRELFGCTPVEYMERVGWVGPDVWYAHAVHLDDAGIETMARTGTAAAHCPTSNARLGAGIARAADLVKGGVTVGLGVDGAASNEACSLIEESRHALLFARAKGGPQTMTVRKALELGTIGGARVLGREGEIGSIEVGKLADLAVWKLDTVAHAGITDPVAALVLGSTPPLKLLLVNGRIVVADGRVTTVDEDVVASDVARAHRDLLGKA
>NZ_CP023720.1|WP_097388211.1|4020166_4020976_+|FAD-binding-molybdopterin-dehydrogenase
MDLHSVDEVLVPRTRAELPCASPGIGFIGGGTWLYSEPQPHLTTLVDLAGFDWKAVVVGDLGLEIAATCTIEELCRAGLPTSWSAAALFQHCADALLASWKVLRYATVGGNIALSFPAGAMTTLCTALDAELTIWRPDGTEYSVPVVDFVIDDSRNVLGPGEIIRSIRIPVHALTARTAMRKLAQTSLGRSAVAVAGRCGADGFTLAITAATRRPYALKFDKLPDAAALADALHSRIPEDAYFTDVHGTAPWRKAMTDLLAEEIRGELE
>NZ_CP023720.1|WP_097387544.1|4020972_4023684_+|molybdopterin-dependent-oxidoreductase
MKYSVDGVPRDDQPRPGQCLRTFLREHGANSVKKGCDAGDCGACSVLVDGHPTHSCIFPAHRLGGRDVVTAAGLGTPEKLHPIQQAFVDAGGFQCGFCTAGMVVTASALSVEQKSDLACSMKGNLCRCTGYRSIRDALAGTSNTETAKTGGAQGRSIAAPASARIVTGTEQYTMDFSPGEKPIGLLHVAVLGSPHAHAHITRIDTAAAEAAPGVAAVLTFQDSPDVLFSTARHEDRNDDPDDTRVFDRTVRFRGQRVAAVIAETPTQAERALSLIEVDYEVLDAVFEPDLARSPGAPLLHGDKDESSRIAEVPRNVVAALHDGVGDLDRALADATAVVEGAWKTARVQHVALETHGAVGWLDEDGRLVIRSSTQVPFLVRDELAHIFDLDRSRIRVFAKRVGGGFGGKQELLTEDLVALAVLRTGRPVAYEFSRSDQFTIAPSRHPMRVSVRAGADADGTLTALAIDVLSDAGAYGNHSIGVMFHGCAESMAVYRAATKRVDAEAVYTNNVPSGAFRGYGLGQIIFAVESAMDQLADRLGMDPFEFRRRNVVVPGDDFVDWHVEDGDLEFGSYGLDQCIDLVDSALSSGRGEAAPAGSRWQIGRGMAIAMIATIPPRGHFSDTTVALEADGRYVVNIGTAEFGNGTTTIHQQIAATELRTTVDRITIVQSDTDAGGYDTGAFGSTGTVVAGKALLIACERLRERILTRAVRLSGRGAQIDDLSPDGVETSHGCLDFATLLEGGPLAADGRHDGTPRSVSFNVHGFRVAVDTDTGRVKILQSVQAADAGTVMNPAQLRGQVEGGVGQALGAALSEEIVIEEGRVINPQLRNYHVPQIGDLPITEVLFADTYDKLGPFGAKSMSEAPFNPVAPALANAIANACGVRMYSTPMTPDRVWSELQARA

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Crispr_ID: NZ_CP023720_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023720_3

5836601-5836692

Orphan

Consensus_repeat	Method
CCGCAGGGTGGAAGTTATCCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023720_3

>merge|NZ_CP023720|3|5836601-5836692|CRISPRCasFinder
CCGCAGGGTGGAAGTTATCCCCCGCCCGGCGGCTACCCGCCGCCCCCACAGGGCAACTTCCCTCCACCCCCGCAGGGTGGAAGCTATCCCCC

>NZ_CP023720|3|3|5836601-5836692|CRISPRCasFinder
CCGCAGGGTGGAAGTTATCCCCC	GCCCGGCGGCTACCCGCCGCCCCCACAGGGCAACTTCCCTCCACCC
CCGCAGGGTGGAAGCTATCCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023720.1\|WP_097387995.1\|5829399_5830587_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|236039
NZ_CP023720.1\|WP_046377798.1\|5827281_5828061_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP023720.1\|WP_097388000.1\|5844041_5844989_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223677
NZ_CP023720.1\|WP_097387998.1\|5834960_5835614_-\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP023720.1\|WP_097388001.1\|5845004_5846528_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235719
NZ_CP023720.1\|WP_007731596.1\|5840563_5841535_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP023720.1\|WP_019746515.1\|5832429_5833038_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP023720.1\|WP_019746510.1\|5836807_5837422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227760
NZ_CP023720.1\|WP_020723626.1\|5839745_5840537_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP023720.1\|WP_007731603.1\|5847609_5848434_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP023720.1\|WP_021332888.1\|5830674_5831766_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP023720.1\|WP_080910602.1\|5831817_5832378_+\|TIGR03086-family-protein	unknown	unknown	gnl\|CDD\|274424
NZ_CP023720.1\|WP_097387999.1\|5837539_5838274_+\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_CP023720.1\|WP_007731601.1\|5846539_5847442_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP023720.1\|WP_078377457.1\|5836032_5836467_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP023720.1\|WP_019746508.1\|5838264_5839554_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP023720.1\|WP_092765385.1\|5828083_5829373_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340926
NZ_CP023720.1\|WP_097387997.1\|5834191_5834932_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP023720.1\|WP_097387996.1\|5833039_5833936_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_CP023720.1\|WP_007731597.1\|5841651_5843991_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110

Protein	Function_ID	Function_description	E-value
NZ_CP023720.1\|WP_097387995.1\|5829399_5830587_-\|acetylornithine-deacetylase	gnl\|CDD\|236039	PRK07522, PRK07522, acetylornithine deacetylase; Provisional.	0
NZ_CP023720.1\|WP_046377798.1\|5827281_5828061_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	1.7826e-13
NZ_CP023720.1\|WP_097388000.1\|5844041_5844989_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|223677	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only].	2.33824e-45
NZ_CP023720.1\|WP_097387998.1\|5834960_5835614_-\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	1.47805e-22
NZ_CP023720.1\|WP_097388001.1\|5845004_5846528_+\|AMP-binding-protein	gnl\|CDD\|235719	PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional.	0
NZ_CP023720.1\|WP_007731596.1\|5840563_5841535_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.78159e-27
NZ_CP023720.1\|WP_019746515.1\|5832429_5833038_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.3502e-09
NZ_CP023720.1\|WP_019746510.1\|5836807_5837422_+\|hypothetical-protein	gnl\|CDD\|227760	COG5473, COG5473, Predicted integral membrane protein [Function unknown].	6.02694e-10
NZ_CP023720.1\|WP_020723626.1\|5839745_5840537_+\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	1.16276e-79
NZ_CP023720.1\|WP_007731603.1\|5847609_5848434_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.57734e-19
NZ_CP023720.1\|WP_021332888.1\|5830674_5831766_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.63873e-18
NZ_CP023720.1\|WP_080910602.1\|5831817_5832378_+\|TIGR03086-family-protein	gnl\|CDD\|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	1.08025e-23
NZ_CP023720.1\|WP_097387999.1\|5837539_5838274_+\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	3.1129e-53
NZ_CP023720.1\|WP_007731601.1\|5846539_5847442_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	6.14745e-57
NZ_CP023720.1\|WP_078377457.1\|5836032_5836467_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	5.95624e-16
NZ_CP023720.1\|WP_019746508.1\|5838264_5839554_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.07811e-173
NZ_CP023720.1\|WP_092765385.1\|5828083_5829373_-\|MFS-transporter	gnl\|CDD\|340926	cd17368, MFS_CitA, Citrate-proton symporter of the Major Facilitator Superfamily of transporters. Citrate-proton symporter, also called citrate carrier protein or citrate transporter or citrate utilization protein A (CitA), is a proton symporter that functions in the uptake of citrate across the boundary membrane. It allows the utilization of citrate as a sole source of carbon and energy. In Klebsiella pneumoniae, the gene encoding this protein is called citH, instead of citA, which is the case for Escherichia coli and other organisms. CitA belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.62733e-110
NZ_CP023720.1\|WP_097387997.1\|5834191_5834932_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.71145e-88
NZ_CP023720.1\|WP_097387996.1\|5833039_5833936_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	9.69055e-126
NZ_CP023720.1\|WP_007731597.1\|5841651_5843991_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	3.37479e-127

>NZ_CP023720.1|WP_078377457.1|5836032_5836467_+|RDD-family-protein
MPSGAQPGDLWIRLGARIIDGIIVGIIAAILALLVSDSDSLILISGLFSGILTFAYFIAMEVTQGRTLGKMILGLSVHGPGGAPRPSVQQSAIRNAFTLLSIIPIIGGILALVAYIVIAVTINNSPTKQGKHDELAGGTQVVKG
>NZ_CP023720.1|WP_097387998.1|5834960_5835614_-|DUF4190-domain-containing-protein
MTSSGGNNDDSSSDYQAKPGYGEFPSLPPEGYGVSPSETQSSPEVPGYTTPNEQYPGYPPPSYNPTGNTPQPGGIGEPNPYLPPQNFGPPNQYQPNQYQQSGQYGQAQYGQPQYGQPPNAYGQPNQFAGGYIPPMQPVGTNGLAIASLVVSLAGGCFYSLGGIIGIILGIVALNQIKQTGQEGRGLAIAGIAVGATFLAIFAVILVVALIASASSSY
>NZ_CP023720.1|WP_097387997.1|5834191_5834932_+|EAL-domain-containing-protein
MVRELREALDDHQFEVLYQPQVNLNSSAIISYEALLRWRHPLRGLIEPQDFMRSAESSGLIIPIGLQALDMICAQTASWPEHMMVAVNFSPRQLATPHAAHEILGALDSSETPLSRIIVEVTELGVVGRHAAETLHVLHNEGIRIALDDFGAGFASFSALSELPLDILKVDQSLTWAVSAAGRAGDRAFMVMESIADIARKLGLDSIAEGVETAEHAANVLRAGCDMGQGYYFGKPLPASSIVTPV
>NZ_CP023720.1|WP_097387996.1|5833039_5833936_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MAGAGRFAPSPSGDLHLGNLRTALLAWLFARTSGRDFLIRVEDLDRVRPGSMERQLDDLRRLGLTWDGPVVLQSHRLPLYHNAIELLRERHLTYPCFCTRKEILQAPSAPHAPDGAYPGTCRNLSAAERAEKSASGRSPALRLRADIDSFTVHDELFGEVTGQVDDVVLLRGDGVPAYNLAVVVDDGAQNIDQVVRGDDLLTSAPRQAHLAQLLDIEPPSYAHVPLALNSEGKRLAKRDGAVTLADQLEAGRSAEQVLTMIASSIGLAEPGEVVTPLQLADRFDSRKIPRTPWIFPAK
>NZ_CP023720.1|WP_019746515.1|5832429_5833038_+|TetR/AcrR-family-transcriptional-regulator
MPERRKSSTSPDLLAAALFDVAAESGLENASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDRLLTRLAESSADADPHTALFQALSQLLPLDEQRTREAHVLAAFAVRAATSESLSEIRRTTLFTIRTGISTVLIGIGTPEAETRAALLLSTVNGLALDALGSPAMYPPQYLDHALETQIRLTLHDAENPLASVGLAS
>NZ_CP023720.1|WP_080910602.1|5831817_5832378_+|TIGR03086-family-protein
MTSTEISPAQRYRDLAAGFTARIDAVPADRWDNASPCEGWTARDVVRHVLDSERDMVKVVGLELAPGPSVDDDPSAAWAAVRDSMQAILDDPAKSTLEYDGHFGRTNLGATVEGFLCFDLVIHGWDLAAATGTDTTMRDTDVEWVSEIAAGLGESIRMSGVCGPEIQVPDNADKATKLLAFLGRKA
>NZ_CP023720.1|WP_021332888.1|5830674_5831766_+|Lrp/AsnC-family-transcriptional-regulator
MKMHDTCNMIEETQDSAVLDDVDLALINCLQLDPRASWRTVGDALKVDPVTVARRWQRLQDSGTAWVSARATGHGRPESCLAFVEVDCTTSNALAIAERLARWPQVLSVEHTSGPGDLTLLVEVRDMAFLSRFLLRSLASVPGIVSSRAHLVTEVFAIGDDWKLQVLDATQRAVMTDRPVRYKYAPTDQRHHGKTFDAVDRQLILKLGEDGRSSIAELTVGTGLSESTVRRRLAELTSRNQIVFRCDVSLPLSGWPLVTWVWGYVDPTDRSTIRALVERVPGTRVCMRISGGRANTLLAIAAHSLRETPITEVQLAQEAPGLVVLNRSVVLRSMKRVGRLLDDEGKSAGVVPMDIWAEAPEIE
>NZ_CP023720.1|WP_097387995.1|5829399_5830587_-|acetylornithine-deacetylase
MSSTTLSAVPTERSLDWVQRLIGIDTTSAVSNRPLIDLIAAELRRHGVEPILVSDDEGSKLNLLATFTPPDGSTAGGVMFSGHTDVVPVDDQDWSSHPFTPEIRDGSLYGRGTCDMKSFIGIVVAAIPDIVARPLAKPIHFAFSYDEEVGCIGAAGLVEEVVSRNLRPDVCVVGEPSEMRVIRAHKSMNVIRVDLHGVSAHSSLTPQGVNAIEYGAELIRFVRSAADELRASGPYDDAFDVAWTTCSVNLVSGGIAVNTVPEDCSITFEFRSISSAGAADLLERFAAEANRIENLMQEENPSASVTMHVSASVPPLETDANASAAALVEQWGGRPSDEKVAYATEAGMFASIGVPTVVCGPGSITQAHAPDEYVTLDQLAQCEQFVRNVIAHARA
>NZ_CP023720.1|WP_092765385.1|5828083_5829373_-|MFS-transporter
MSTATTPTSGAVTPERLAAARKAVISSSLGAALEWFDVIVYASFAVVIAHNFFPGGDNTLGLILTFATFAISYVIRPLGGMVLGSYADRRGRKNALTLTMMLMMIGTFIMAVAPTTSMIGPWAGVVILVSRLIQGFSAGGEFGTATTFLVETAPHKKAFYSSWQVASQGASVFLASLFGYVLNTHLSHEALYSWGWRVPFFFGIIVGPVGLYIRAKLDETDDFKTSVPEKAPLKTTLTRHLGRVLTGAAVVGVATISIYLILYMPTFAVKNLGVSASAGYLGGIVAGLVTLITVPLIGHLADRVGPARVMTWAAVAAIVLAWPLFKLMVDHPSTLTLVLVVSALGVIMAFAFGPLPALMSSLFPAEIRATGMSLSYNLGVTLLGGIAPLVLTWLISTTGSLDAPSYYYMTVAVLSLGGLWSARTLFSQK
>NZ_CP023720.1|WP_046377798.1|5827281_5828061_+|AraC-family-transcriptional-regulator
MGWYTPQSVAPDLSDILVCGWTACAEGEHLLVPDACMDVLWIRGVGIRVCGPETAAWSFTLPPGTRSVGVRFRPGSASPMLRTSASELRDSRADLSAVTDARTERILLNRLENSEDHEQVSILESAVRSWASSSFRHDPVINHVRTALSEHSWNVSTLADAAALTSRQLQRRCNDAFGYGPATLRSILRLQRFMALARSRPALGLAESAAHCGFSDQAHLTRECRRISSLTPAALLRTQAPDWHGSDTVVALAEGDAVA
>NZ_CP023720.1|WP_019746510.1|5836807_5837422_+|hypothetical-protein
MGAAISYGWNKFKDNALVWIGISIIAFLIAGLIQGAFNGFDYTNTEFSALSIVGGLVTAIVGYIIQAAFLRGALSELDGIKPAFGTFFQFTNIGAVVLGGFLVAVATYVGLVLCIIPGIIAAFLLYYTLTFIVDKNQDAISGIKSSYALTSSNVGTLILLALALIGINIIGALLCGIGLLVTAPVALIASTYAYRVLTGGHVAA
>NZ_CP023720.1|WP_097387999.1|5837539_5838274_+|queuosine-precursor-transporter
MTDVTAQDQQDESTHETKFAHVSRGYYPTIVALFTATLLISNVAATKGVAFFADSDFSLGPLQILPIITDGGFFLFPLAYVLGDVLSEVYGFKATRRAIYLGFGALILASACFWIAVQLPSAEFYENQAALETVVGVIPRLLVAGLAAYLVGQLLNSLVLVMMKKRMQEKHLWARLIGSTVVGEFADTLIFCSIAAGVIGISTWEDFINYVLVGFLWKTLVEVLVMPITYRVIAYVKKREPTYV
>NZ_CP023720.1|WP_019746508.1|5838264_5839554_-|tRNA-guanosine(34)-transglycosylase-Tgt
MTSAVPTPPAPSVDKRPESIFTIGTRLEDRLGRTGTIHTPHGDIATPSFVAVGTKATVKAVLPESMKELGAQSLLANAYHLYLQPGPDIVDEAGGLGKFMNWDGPTFTDSGGFQVMSLGVGFKKVLAMEAVGVQSDDVIAKGKERLATVDDEGVTFKSHLDGSKHRFTPEVSMQIQHQLGADIMFAFDELTTLLNTRGYQERSVERTQAWAIRCINEHEKLTAERAEKPYQALFGVIQGAQYEDLRRQACRGLESIEGENGYGFDGYGIGGALEKQNLGTIVRWCNEELPETKPRHMLGISEPDDFFVAIENGADTFDCVNPSRVARNAAIYVRSGRFNINTSRFRRDFTPIDDECDCYTCANYTRAYIHHLFKAKEMLASTLCTIHNERFTVKLVDDIRASIEGGYFHDFKADMLGKFYAAKTPAPQT
>NZ_CP023720.1|WP_020723626.1|5839745_5840537_+|enoyl-CoA-hydratase
MTRQTGQTYNFVTVDVTDSIATVTIDKPPANAFNPSMIAELLEILPVLASDQTVRVIVVTGTGRFFVAGADITVMRELTEETQRAMRPWVDVQRILESAPKPVVAKINGHALGGGAELTLACDFRIMAQSATIGFPEIGLGLFPGAGGSQRLPRLIGAHRAKVLMIEGKRLSAEHALDIGLVDTVVADADLDAHCADLARELATKPTATIGMIKRIVDEGMSLPLDQALDLEFEAVLDLIKTDDAAEGLQSFLDKRSPTFTGR
>NZ_CP023720.1|WP_007731596.1|5840563_5841535_+|ABC-transporter-substrate-binding-protein
MLNKFQKKWVGAVASLAALTIAVSGCTRPATDNSAESGGLVRIAVGVDPSYAPIFLADHEGMFEAAGLDVQVIQTEGGAAGAQNVVAGTSELSGNADSTALSVMAANPSLRALGVFQESDRYFQVVLRNGVEPKSIKTMGVFPGIGLYFTNQYLASLGIDPTTVTLVSTSPPEQPALLARGDIDGFLSFDPWVTQSVNTGGRVVATTGDFGAKYAQWIIASDNWLSANEETAGKVFKVISEASAIVNSDPDRAATAIAASIQMDPAEAADRVTQIDFGGRGFTEDDVERANELVAFFREQGKISADIDPSAVLLSGWFEQNAA
>NZ_CP023720.1|WP_007731597.1|5841651_5843991_+|CoA-transferase
MVHPPVRVVEISSPFARFAGRILVGLGFEVILVEPPTGDPSRTESQGDSYLHWHAGKKSVVLDIDDSNDRLAFEALLRSADVLLDGSATGALRDNRGSLVHVRVTPFGTTGPRSDWKATNLTVAALGGMMAQVGDPEHPPLLLPELQAEQLAGINAAIGVLLGLRSRSKGHNPLLEISAQECVAAALEAGTLAYIHEDRVPPRPGRVHPLVPHGLFQAADGYVGGGLGGSPRMWDGMLAWLIDNDAQDDLDQPEWSDAVYRKTHQEHIFDVLSAFIAKWPKEEFAVSAQSRKLPWAAVDRPEELLRNPQLNDRDFFTDVTGDHGTYRDLGFGFAFPEGRRIGTLEAARLGQHQELLKATSPVAVNETHEFSGGSTPSLEGVRVLDLTWVLAGPYGTRILADHGADVIKVESIGRPDPTRFAPFMHLSRGPHDNPNTSGYFNDVNRNKRSITLDTRSAEGLSVLRDLIRNSDVVVENFSSSVMDKMGLGYEQLRELNPDIIYVSMSGMGHTGPRKDWVSYADIVSASTGLTALTGWNADDVVGVIYGHGDIVAGLQAGVAMLAALDYRDRTGRGQHVDLSQLEAMAAHMGTSVLRAARSQSPDPIGNSHHELAPHGVYPCLGSDRWCSIAVRDTTEWNALCRIIEAEKWIGNPDFASAESRQADHERIDDAIADWTRTLSPETVMERLQSAGIAAGTVQDGRDLVESDPHLRARSFYSAQEHPLAGTFLHEGIPVRRNSEPGSIRRAAPVLGADTDDVLESVLGYSDELIAGLRDQSILS
>NZ_CP023720.1|WP_097388000.1|5844041_5844989_+|zinc-binding-alcohol-dehydrogenase-family-protein
MRAARLHQFGTSPVIDDIDIPTRESGQTLVRIDAAALGHLDITVASGNFGVKPNLPHIGGTDGAATVIESDTYEPGTRLLVRGGGVGLFKNGCWAEYLVAADKAFTPFDPALSPAVAATFFLPSTTGYVSVNDIAAVAPGERVVVAGASGAVGSMAAQFALLAGASEVIGVVPREDQAALLPEGVRPVVGQGDELAGVLGSEPSVDAVIDTLGGDGLPHLLASVIPGGRAALIGYTLGKSLTLDLPNWLLSDVRILPVNMIRKTARQAELATEMIRLLIEGKISVAVQEFPLDDIATALQLMGEGKVAGRAVVVP
>NZ_CP023720.1|WP_097388001.1|5845004_5846528_+|AMP-binding-protein
MPHDAHANPRSLPDLIRRRALERPEHPALVVDGITVTYRELRDRAASMGADLRNHGVGRGERVAALSGNRIELADLVLGCAWIGAVVVPLNTALRADSVASALEQAGVQRILVSPEYSGAVAGFDGTVWVMGEQCVPTAGSHPGCEPETLDPLDLAAILFTSGTTGLPRGVRCPHAQFLQWGKGVGASLGLTGDDVLYNCLPLFHTNALNAFVQSLWAGSTFFLGQRFSVRNHWREVREIGATVDYLLGAMVAMLMNADPSPQDRQHSVHVALAPATPAHLIEPFAQRFGVELVDGFGSTETNLVIGTLPGDRRAGYMGRVMSGYDAAVVNDGTAAADGEPGELVVRSTIPGACSLGYLGEEIPATESWIQTGDRVIREADGWFRFVDRIKDVIRRRGENISGAEVETVLALHPSVGQVAVFPVPSDLAEDDVMATVILRPGVSFEPISILEFSQQQLPYFALPRYIDVVDTLPLTETGKVQKAVLRERGVGPHTWDCEKSVFRARR
>NZ_CP023720.1|WP_007731601.1|5846539_5847442_-|IclR-family-transcriptional-regulator
MAAPQQSVGFGSVLPIASETTAASQPAGELSSVLGKARMILDAFDTDHSDLSLTELTRRSGVAKATVHRLAGELVEWGLLERAGTKYRLGLRLFELGQLVPRQRILRDAALPYMEDLLLATQETVHFAVRDGIDVLYIEKIIGHRGLNQQSRVAGRLPLYCTATGKIILAFSPQSVFDEVVEQGFTALTSRTTMSVSVLRQQTERMRKEQLAVEVEETRLGYMSVAVPVFSGPRTLAGALSVTAPTARLNVSRITGALRTAGAGITRKLHAMKCTHSPSDPLALRTICSPVMCSFNGCGK
>NZ_CP023720.1|WP_007731603.1|5847609_5848434_-|alpha/beta-hydrolase
MAGGLQLGYVDSSFGQLHYAQQGSGEAILLLHQAPRSWDEFREFIPLLADDFRVVAMDMPGYGNSAPVPGPQTIETYARGAWELLDTLGVDRVTVIGHHTGAAVALEMAASRPERVHAAVLSSCPWTDRNYREGHSGPGGIDCVDRAADGSHLTRLWEMRRPYYPEPGTALLDRFIRDALAYRVDPAEGHKACARYVMEARVGSVTAPVLLIGAQKDPFSMPNIAPLRAHLTGAAVVETEIVESGTVALVEEHAPQIASAVRMFLENYAGRRPV

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Crispr_ID: NZ_CP023720_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023720_4

6096601-6096705

Orphan

Consensus_repeat	Method
CTCGTCGACAACCCGTTCACCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023720_4

>merge|NZ_CP023720|4|6096601-6096705|CRISPRCasFinder
CTCGTCGACAACCCGTTCACCTTCGAGCCGGTTGCCGAGGCAACGTCCGCACACGCTCTGCAGGGTGTGGGCACCAATGCCCTCGTCGACAACCCGTTCAGCTTC

>NZ_CP023720|4|4|6096601-6096705|CRISPRCasFinder
CTCGTCGACAACCCGTTCACCTTC	GAGCCGGTTGCCGAGGCAACGTCCGCACACGCTCTGCAGGGTGTGGGCACCAATGCC
CTCGTCGACAACCCGTTCAGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023720.1\|WP_097388077.1\|6103821_6104562_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP023720.1\|WP_097388074.1\|6099037_6100378_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274674
NZ_CP023720.1\|WP_063315292.1\|6092253_6093234_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP023720.1\|WP_019746321.1\|6087254_6087842_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP023720.1\|WP_097388078.1\|6104558_6105680_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP023720.1\|WP_058038095.1\|6094021_6095089_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP023720.1\|WP_019746303.1\|6102636_6103263_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP023720.1\|WP_097388071.1\|6095173_6096433_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP023720.1\|WP_069146707.1\|6091275_6091569_+\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378276
NZ_CP023720.1\|WP_097388072.1\|6096808_6097621_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274832
NZ_CP023720.1\|WP_003943598.1\|6103269_6103710_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|379177
NZ_CP023720.1\|WP_097388068.1\|6090826_6091279_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023720.1\|WP_097388069.1\|6091570_6092257_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|188352
NZ_CP023720.1\|WP_021332670.1\|6105719_6106922_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP023720.1\|WP_051253106.1\|6089176_6090823_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP023720.1\|WP_046377698.1\|6087860_6089108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023720.1\|WP_097388076.1\|6101613_6102585_-\|sugar-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|224662
NZ_CP023720.1\|WP_097388075.1\|6100374_6101667_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274674
NZ_CP023720.1\|WP_097388070.1\|6093230_6094025_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP023720.1\|WP_097388073.1\|6097617_6099045_+\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|225487

Protein	Function_ID	Function_description	E-value
NZ_CP023720.1\|WP_097388077.1\|6103821_6104562_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.83396e-79
NZ_CP023720.1\|WP_097388074.1\|6099037_6100378_+\|hypothetical-protein	gnl\|CDD\|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	1.26406e-69
NZ_CP023720.1\|WP_063315292.1\|6092253_6093234_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	6.2908e-45
NZ_CP023720.1\|WP_019746321.1\|6087254_6087842_-\|DinB-family-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	9.98775e-42
NZ_CP023720.1\|WP_097388078.1\|6104558_6105680_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.62764e-11
NZ_CP023720.1\|WP_058038095.1\|6094021_6095089_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.73498e-91
NZ_CP023720.1\|WP_019746303.1\|6102636_6103263_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.36454e-09
NZ_CP023720.1\|WP_097388071.1\|6095173_6096433_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.91065e-54
NZ_CP023720.1\|WP_069146707.1\|6091275_6091569_+\|SHOCT-domain-containing-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	3.373e-06
NZ_CP023720.1\|WP_097388072.1\|6096808_6097621_+\|hypothetical-protein	gnl\|CDD\|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	0.000518447
NZ_CP023720.1\|WP_003943598.1\|6103269_6103710_-\|PAS-domain-S-box-protein	gnl\|CDD\|379177	pfam13426, PAS_9, PAS domain.	3.26675e-11
NZ_CP023720.1\|WP_097388069.1\|6091570_6092257_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|188352	TIGR03605, antibiot_sagB, SagB-type dehydrogenase domain. SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.	2.36442e-25
NZ_CP023720.1\|WP_021332670.1\|6105719_6106922_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.74542e-52
NZ_CP023720.1\|WP_051253106.1\|6089176_6090823_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.21074e-22
NZ_CP023720.1\|WP_097388076.1\|6101613_6102585_-\|sugar-nucleotide-binding-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	7.40894e-12
NZ_CP023720.1\|WP_097388075.1\|6100374_6101667_+\|hypothetical-protein	gnl\|CDD\|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	1.69303e-69
NZ_CP023720.1\|WP_097388070.1\|6093230_6094025_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.39383e-100
NZ_CP023720.1\|WP_097388073.1\|6097617_6099045_+\|CocE/NonD-family-hydrolase	gnl\|CDD\|225487	COG2936, COG2936, Predicted acyl esterases [General function prediction only].	3.19401e-36

>NZ_CP023720.1|WP_097388071.1|6095173_6096433_-|MFS-transporter
MSETPTTGSVEAQPHVFRDRSFRLFFTARTIAVAGAAVTGVAMPILVFDISRSPFLTSLAAAGTVLPYLVFGLFAGAVADRVNRRTVILCAQAVAALALASIPAAQALGVLTAWHAVGVSMCIGTCFVWFDAAAFGALPALVGRQRIPAANSALWTSSTLIDVVFPAIAGVLVASIGPAYALGADALAYVLAGLAMASIGASFSITPAAPKKSGTGIARDIREGLNFLWQSPLLRALTGVGFVNSLTQGAVTALLVVYASERLGISTSSPMIGAVWTAVSVGGVVGAVLLPRLPAQWPVGAITVGALTIGPVVLFVVATTGNTGAAITALVVYSGCATVTILNGIGARQRLTPDRLQGRVNTTARMVAWGGSPVGALIAGAIAGRWDIGTAYLVACIFALVGALFAWASALRTDPHPHR
>NZ_CP023720.1|WP_058038095.1|6094021_6095089_-|iron-ABC-transporter-permease
MTLTSEAAPRVPSRPHPVGERGYVPFLLATAVVLVAVSTVAVWSGAASVSFADVFAVLYAHVGGPPVDPLLDRIVWGLRVPRILIAALAGAGLSLAGAVLQALVRNPIADPYILGVGSGASFGAVLIMTTGIGTSLSIGVPVAAFLGAMVSLIAVLVLGRREGMLVPLRMVLAGVAIGYLLSAATSFVQLRADPSQLSGVLFWLLGSVSGASWSDLGVPAAVITVCAAILLTQSRQLNALAMGDESAQSVGVDVRRTRLLLLVIASLLTAVVVSVAGGIGFVGLLVPHAVRLLVGSDHGKLLPATALVGATFLVIVDLAARMLDAPNELPLGIITAGLGAPFFLWLLRRDGGAQS
>NZ_CP023720.1|WP_097388070.1|6093230_6094025_-|ABC-transporter-ATP-binding-protein
MRLSASGIHVVRGGRLVVSGVDLEAPEGSVVGLVGPNGSGKSSLLRALYRSMKPRSGIVKVDEVNVWDDHSPRSAARIIGVVGQEHSSDFSFSVREVVATGRTPHHSAFSRLGEIDRDIVSAALMRTGMQGFGSRLFAELSGGEKQRVMLARAIAQQPSVLVLDEPTNHLDIRAQLELMELVAELGTTTIVAIHELALAAAYCDYVCLLSGGVVVATGPTAEVLTEDLLSEVFGVQVHLGTHPLTGRPLLSFAPPLLHTKEAVS
>NZ_CP023720.1|WP_063315292.1|6092253_6093234_-|ABC-transporter-substrate-binding-protein
MKSSIRTAALLCSAVTATAVLTACGNSTADSAASSSEKITVTNCDREVTVPKTAERIVSLYPSMTELLIQLGAADRIVGQSNTDLSPPSPELADQFAAVPVLSTGVPAKEALLDARPDLIVSDGEYWFDGDRLQTMDELRDLGIPIFVNSGYCHKAVTEGRIDDVWSDLDGLGALTGTSDAAATLLADGKKSLAATEASVAGQEPVPTVMVQVSEGQSYALARGLYSSVLEAAGGSNLFENDLPDGKYFGQVATESVLAKSPKAVLVVYSTESARESTLDAARTAFAGTPAAASNAIFAVPEAWFAGELVSIDGAGEVSRLLHPGS
>NZ_CP023720.1|WP_097388069.1|6091570_6092257_-|SagB/ThcOx-family-dehydrogenase
MTALERIEAVVSLHAVLDRTVSPSELPFDEGALPPVTSEFVELPAPTPLPAQDFPDILQARRSHYNPAQDALGIDELSNVLHHSLVSSPTAGGMRELRLSFVVSQPGHSLGAGVYRYIQEGRAEAVRLGDVQGNLRASLLQPEFVDVFPVLLFVVADVEAPLEKYAMRHYRTMHVDAGVLVQNLYLVTEAMGLVGCAIAGFTDARVASLLNLATTQLPVMAFALGRPS
>NZ_CP023720.1|WP_069146707.1|6091275_6091569_+|SHOCT-domain-containing-protein
MSFLRRAGRVAVASSIHGNVQRRQRTRWAAEDQARAAQVQPVPPIPDLPPLPPQAAPAESEMSMDAKLEQLTKLGELKNAGVLTEAEFETQKARILA
>NZ_CP023720.1|WP_097388068.1|6090826_6091279_+|hypothetical-protein
MSNQDQFGPIEYVAVEFPSGAPTSAGFEQLLALVDSGVIRILDLEFVTKAADGSVSVVPASTFELADFDLAQFDGAASGLLDAGDIAAVGEELAAGSVAAVLVYEELAILPVIEAWTRSGAKVVTEGHLSVDELAAALDNTAPDTTEKDA
>NZ_CP023720.1|WP_051253106.1|6089176_6090823_+|MFS-transporter
MSVKPGAADTSAAVTTASWLPLIVVVLTQIQASFAVNALTVSMAGITTDLDTPATSVGTAITAGTFAMAAFILLGAKIGARYGTRLVFQIAVAIHGLAMAAVALSQSPAMLFVAQAASGAVIALIAPALTVFIATNFNGDQQAKAIGYLAAAIPAAGVLALLIAGSFATTIGWRYSFALVVALAVVNLVLSFRVKPVPPQKDITIDWAGAALAAVAVILLSFGFSGLNSWGVILATDAAPFSVIGVSPAAILIVLGTICAQGFFQWTRSRKAQNKPQLFNLDVLKTGAERATTICMATMMFVGTAANFLIPLYMQIIQGRSSLQTSFSIIPYTLSIFIASTVVARLYKTYSPRLIARAGFVVVAAGLILLAFTIRGDWHQIFVVIGLITLGLGQGAIVALVFNTLLTAAPKELAGDVGAWRGLVHNMSGSVGIAVASVFAVGILGTLVSSQLIDNPTIPASLKVESGINLDQVNFVPNDQLVVTLENTSATQAQIDEAIRINTEARLRALRTSLLVLAGLSLLAIIPAGRMPNEVPALEEPQPTKGKK
>NZ_CP023720.1|WP_046377698.1|6087860_6089108_+|hypothetical-protein
MEQTLTAVEDLTEVASRAVAAERDARSVRWHNPAAVRKAAASVRDSLDDERSALSRPSYSGLSPSPHMARQLELITTLQPPLPADAGISTAAQAEADAVAAVTTARIALRAAHLAVLEARVAALDAGDSDTVAAAIRGYIPLNSGNPVVRHVQGLGSRIREEARHVVSGKPRSIAFRLGLSLGMGLAYLAFIRLFQWDAKEDRLPYLALYALSGVVGSVVCTNALSFDAGRVRAALSGGTRLWHVLVAKNAMMLLLVGSAGFLLSAILAWRSGSSADLVKACGQVLTMILLWLGVANVMSVALPLRAEPMTARRHDGTWKQFLLSFVISYGVGLIVNLMLYWRVWAKTTLLEQMGGPWIPVLLLLASAAATWLLLTVLAVLLAEQPRFRRALQREMVVYREETNHLQATIQHNSG
>NZ_CP023720.1|WP_019746321.1|6087254_6087842_-|DinB-family-protein
MTTNSEKEDLQRYLQAARDALVWKLDGLSEYDIRRPMTRTGTNLLGLVKHMIGVELGYFGPTFGRRVPDLPAWLRSEELNVDMWARADESSADIVETYRRTWAFADATIEQHDLDAPGFVKHWPEDRRDVTLHRILVHVVTEIHRHAGHADIVRELIDGAAGMKAGDNNLAPGDEAWWAEYNDRLETAAREAHHA
>NZ_CP023720.1|WP_097388072.1|6096808_6097621_+|hypothetical-protein
MYALADGHQLYPTTDGAWHYLTPDENAVTIGAPAEDLAELDNFLRRSGSVLGPGAIEIADALVSRGVLVVPGQVPEIPVPQRVLMDGVGPVADACIALLSKALPDLEVVSTTAPIEDDVASSDLVLSVADAPPHDAWSELDTWCRHSRTPWQRVHAELGEICIGPFFDGIDSASYRDVCGRRLAASRVPDHLLALWNHLADSERRPLKLSPTAAAMVSALACSDVVASSYGAPQSHLHHQIRMNPRTLMMTRHPVLPLPGGVLEPSPTLR
>NZ_CP023720.1|WP_097388073.1|6097617_6099045_+|CocE/NonD-family-hydrolase
MISLGVKIPAADGSSLATDVLLPDSSPRGLIVIRTPYGRGWHLAEGLEWRSRGIAFICQDVRGRHDSTGSWEPYVHEREDGAALAEWLQDQPWTPECVIASGASYAAGTAWAFAAETNGADRAFRARGVVSKVPTIGSDRVKRDPSGILLLAEHLAWWGEHGDSSSSREGFIPALMRSDSSLLEHLPVQSMIEEVGLTSDSPGWLTPIRRAREREDFGGDDLVSADELSELDVAGLHIGGWDDAMIRETLRHFTSVGRGPQSLIVGPWAHDLRPGMVGETSFGRLQVEWMESIFSARPVTINRVFDRGAGDWSTEPYVTGANRVRLEPDPRTAPFNFTHPADEGRNDCVVWTFDMEVECVLSGMPSVELTVHSPEGEADWIVELSIVDSAGVTRSIARGAGVSLQPTMVTIDLDPVLHTVRAGDVLTLRIAGSDFPRLARNLGDGDRYRGTRSTALHQSFSGSLTLPILGGTAGG
>NZ_CP023720.1|WP_097388074.1|6099037_6100378_+|hypothetical-protein
MDDLLVDARSGVLTSLEPHIRSDMPTGWVGWSARVADTRNFGGSGSLFRADPYGFGASIRDDAAARGAATGEAVERYCGNVVPEDLIRSSASALELAGSRVVDPAKFALYSEDQYRLPGFPFVPFTSALEIRWALGHTMDDKVPTYVPAALTYLGYYTGTRRGEPPIASLQYAGIAAGRSRDEAEMSALLELLERDATALWWCGDRSQPAIELADWERLPAHRQLGDLESQTRSVRVLLLPSPFGIPVAAVWIRDDRRGLVALGTACRPTVEAAVSKALVEAYAVLAITIDLADPDGPTWRSVADGTLPAHLYKPFRADRRYRDEFDAQWKDVVDLPTVAQLYLDPVMAHLAEEHLFDYTETRSVSEVPDEDPVNLASLVVLLTSRGYQPISVDLTTRDISIAGLHVVRVLSPGLYNNAPAAFPLLGGSRLTSASTTHLHLPVPLA
>NZ_CP023720.1|WP_097388075.1|6100374_6101667_+|hypothetical-protein
MRSLLVDRRTGIIRELVDAVVPQHFPPEFKLIHSYVCDSARFSPWSSDSAGAGYCFDLGDRARPTAAAIGEAVERYCGNIVAKPIVRGSADALIGASIDLSQLACFDAAQYARPQFPFVEPTDDLELDWTRGVDLITGSDIWVPAELVWGSYPHFVARTGPAISPVAQAGLAAGPTTEFAIRNALHEIVERDAMTLSWTGRRGVRIVTGIPEVLRRLGNHGSLSTRWLSFDSDFGIPVLGALVHDRLTGYSTMGTACHEEAQTAAFKSLGEALQLQLLSADYDDPESGIGLAATSPTSPLAPWRADRHYADVYRSDFADVMDYGCHLQLHLDPEIQARFESELADAVVGEVDTDSLTSPIDTESALTGSGFRPAWVDLTTTDVLRAGLRVVRVVVPGCLTNAAAGLPFLGSPRLVDGLAGRPPRTIPLPH
>NZ_CP023720.1|WP_097388076.1|6101613_6102585_-|sugar-nucleotide-binding-protein
MTKVLVLGGYGAVGIPLMKQLAKVPEISAYSAGRDRARADVVVDLKEPGAYSAAVRDFDVVVNASGFEDVRLAEEAVRSGAAFVDVTATSNYCEELEAVDGPVLMGVGLAPGLTSVLAAEAHRLGDGPVDIVIGLGGGELHGPAATAWTYGMLGTRFPDPDGRSIRNYTGMKTFRMPADATGYRSGPAVRADFSDQHALTRDLGVPVRTYLRLDTSTATLGLAAMTWAPALQKVVPKKLWGSDRWVAMARTDTGPALWVSGRSQSAATATIAARAVQVIRDSAISKPTWFHAVETAESLQLAVPELSVRQWDGTRRTSGKTVD
>NZ_CP023720.1|WP_019746303.1|6102636_6103263_+|TetR/AcrR-family-transcriptional-regulator
MTEVLREDTSARRKIIEAAREVFVDPGYAAATIKQLAAAAGVSVQSVYFVFGNKPSVLSALLDVAVAGDEEKTATLDRPWVAAALGAPHPLGQLRIQVHHGRLILERTADILLALRAAASADEDAARLWQINRTQRRTVQEHLMVGIVEKAPTVDLETAVNVALTLLSPETYTDLVVGAGWTGQKYEEWVVNTLAATLGLDRTVKSRK
>NZ_CP023720.1|WP_003943598.1|6103269_6103710_-|PAS-domain-S-box-protein
MERRRNVAQPPQSPIADLEQMPALILLDRLPVPVMAVHRDGSIVFANPSFADMLGYPKKAVSALRLQDILYDKDADDVSAEQAHRELSSEPGSVKEFVHSDSTLVRATVSQSLLRRDDDTITLAVLHDLTERLWNNPRHIDDKPTK
>NZ_CP023720.1|WP_097388077.1|6103821_6104562_-|ABC-transporter-ATP-binding-protein
MTMTTGTTVLDIQNVDLTFPDGQSRVTALDDVSLRLHRGEIAAITGPSGSGKSSLLAVASTLIRPDSGHVYLRTPEGSTDIAALSRRAASELRRSSIGIVFQQSNLVSSLTALEQLEVMAHLGQSVFTSRTRRKAVKSKAMDLLDAVGLADQCGKRPSQLSGGQRQRVNLARALMNDPQLLVVDEPTSALDQERGAAVMDLIIGVVREHEAATLLVTHDRSHLSRMDTVYRVVDGSLAEDQEALAA
>NZ_CP023720.1|WP_097388078.1|6104558_6105680_-|ABC-transporter-permease
MSIRGAMERVCIRESVEASTGKEFTVFVAMRDLRAARGRFALISVVVLLVALLVSFLSGLTAGLRHQNVSAIEAMNADTVVFADTGAGASFDESALTQDQVNAWAGAAKDVDPIGIGRGKAGLADGNQKSVALFGADGGFGDVTPSASGTVVLSEGAARDLGAGAGDQVSVGTQQFTVSDVRGDDWYSHSPVVWMTLGDWQEANPRGGVATVLAVTGAFDASATDKSAVTTSTTVSGSLDAIGSYKSENGSLTLMTLMLFAISALVIGAFFTVWTIQRTPDIATLKALGATTGSLVRDALGQALIVLIAGVTVGIGLTAVAGSLIGDAMPFVLDASTTVVPAVALIGLGLLGAAFALRFLSTTDPLTALGSAR
>NZ_CP023720.1|WP_021332670.1|6105719_6106922_+|sensor-histidine-kinase
MDEPGPNLAKLGEMHRSPLTPVFAGLQLGLHVLVMALAGVVFLRALIDESDLTATIIALAVIFVAVYLFGVAKRLRGNAARWWLAVLTLVWIATMAVSADAAYLAFGLFFLYLHILRRPWSLLAVTAATAVAVIGTGLHRGWTVAGAVGPIIGAAVAVAIGLGYQALYREAAERGRLIDELMNTREELASTSRDAGKFAERERLAAEIHDTVAQGLSSIQMLLHAAERADPESPAIRQISLARETAADSLAETRQLIAELTPAALDGQSLADALRRICERASSPELEARSVVEGEAIRLPMPLEATLVRIAQGAVSNVLRHADATRMAVTLTYSDNTVSLDVVDNGRGFDVEVLERGPAESFGLNAIRRRVELQGGTFSIESEPGHTAVAVTFPLDVGEQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3828755 : 3836355

Paenibacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019747889.1\|3828755_3829229_+	NUDIX domain-containing protein	D0R7J3	Paenibacillus_phage	6.7e-13	31.2
WP_003944744.1\|3829324_3830290_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	7.7e-157	86.8
WP_085989609.1\|3830553_3831378_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_003944723.1\|3831390_3831603_+	hypothetical protein	NA	NA	NA	NA
WP_092763870.1\|3831663_3833823_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	4.0e-206	51.2
WP_003944767.1\|3833804_3834284_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A217ER62	Bacillus_phage	4.5e-09	30.1
WP_019747886.1\|3834366_3834597_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.5e-21	64.0
WP_092763656.1\|3834888_3835716_+	siderophore-interacting protein	NA	NA	NA	NA
WP_019747884.1\|3835788_3836355_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	7.3e-06	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023721

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023720

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection