CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023817	Aeromonas sp. CU5 chromosome, complete genome	8 crisprs	DEDDh,DinG,cas3,csa3,WYL	2	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023817_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_1

634553-634656

Orphan

Consensus_repeat	Method
CCGTTCTCATCGATATCGATATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023817_1

>merge|NZ_CP023817|1|634553-634656|CRISPRCasFinder
CCGTTCTCATCGATATCGATATGACGGTCAGGAAGGGCAGGCTGCCAACAGGTTCTTCAGCTCAGGCCGATTATTTCCCCGTTCTCATCAATATCGATATGACG

>NZ_CP023817|1|1|634553-634656|CRISPRCasFinder
CCGTTCTCATCGATATCGATATGACG	GTCAGGAAGGGCAGGCTGCCAACAGGTTCTTCAGCTCAGGCCGATTATTTCC
CCGTTCTCATCAATATCGATATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_098968923.1\|645773_647780_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP023817.1\|WP_098968907.1\|625496_625787_+\|Bor-family-protein	unknown	unknown	gnl\|CDD\|368828
NZ_CP023817.1\|WP_098968913.1\|632747_634403_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP023817.1\|WP_172953944.1\|627930_629163_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP023817.1\|WP_098968920.1\|640559_640868_+\|SelT/SelW/SelH-family-protein	unknown	unknown	gnl\|CDD\|226057
NZ_CP023817.1\|WP_098968918.1\|638424_639162_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098968911.1\|629468_630125_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP023817.1\|WP_098968908.1\|625897_627117_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP023817.1\|WP_172954083.1\|624258_624996_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368731
NZ_CP023817.1\|WP_098968905.1\|623219_624245_+\|StbA-family-protein	unknown	unknown	gnl\|CDD\|310773
NZ_CP023817.1\|WP_098968917.1\|637864_638425_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|179642
NZ_CP023817.1\|WP_098968915.1\|636406_636823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_068976981.1\|643193_645098_+\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NZ_CP023817.1\|WP_098968916.1\|636852_637755_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP023817.1\|WP_098968921.1\|641012_642236_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP023817.1\|WP_098968906.1\|625031_625325_+\|Bor-family-protein	unknown	unknown	gnl\|CDD\|368828
NZ_CP023817.1\|WP_098968922.1\|645220_645511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098968919.1\|639357_640482_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|198065
NZ_CP023817.1\|WP_098968909.1\|627178_627934_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP023817.1\|WP_098968912.1\|630386_632474_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098968923.1\|645773_647780_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.34699e-65
NZ_CP023817.1\|WP_098968907.1\|625496_625787_+\|Bor-family-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	1.3386e-31
NZ_CP023817.1\|WP_098968913.1\|632747_634403_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.58945e-68
NZ_CP023817.1\|WP_172953944.1\|627930_629163_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP023817.1\|WP_098968920.1\|640559_640868_+\|SelT/SelW/SelH-family-protein	gnl\|CDD\|226057	COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones].	1.19315e-48
NZ_CP023817.1\|WP_068976981.1\|643193_645098_+\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NZ_CP023817.1\|WP_098968911.1\|629468_630125_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	8.51668e-103
NZ_CP023817.1\|WP_098968908.1\|625897_627117_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.63058e-32
NZ_CP023817.1\|WP_172954083.1\|624258_624996_+\|hypothetical-protein	gnl\|CDD\|368731	pfam06074, DUF935, Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	0.0083799
NZ_CP023817.1\|WP_098968905.1\|623219_624245_+\|StbA-family-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	3.97162e-103
NZ_CP023817.1\|WP_098968917.1\|637864_638425_+\|YceI-family-protein	gnl\|CDD\|179642	PRK03757, PRK03757, YceI family protein.	1.69072e-77
NZ_CP023817.1\|WP_098968921.1\|641012_642236_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP023817.1\|WP_098968916.1\|636852_637755_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.00276e-97
NZ_CP023817.1\|WP_098968906.1\|625031_625325_+\|Bor-family-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	7.8456e-21
NZ_CP023817.1\|WP_098968919.1\|639357_640482_+\|adenosylhomocysteinase	gnl\|CDD\|198065	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain.	3.99489e-45
NZ_CP023817.1\|WP_098968909.1\|627178_627934_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	4.49323e-155
NZ_CP023817.1\|WP_098968912.1\|630386_632474_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.33214e-72

>NZ_CP023817.1|WP_098968913.1|632747_634403_+|methyl-accepting-chemotaxis-protein
MNTSTMTIGKKLTAGFAVLGLMVAFIGGFALVQFGNMNDVAIRFTDSILPAVNRTSAIGDSLGELRRYELGYFMVAAEPLKRAEYRNIASQQLNSIAQQLSAHDKTIWPEDVAERRTFDTVKSDWDRYVALHQRVKQLQDSEQLAEAQRIFLEEGVPLYTALSKSVASLIQINHGYAAESRGDVVESYQSAKLSVTIALVLGLVLVVVLSMVLTRQIRDPLIMLARQAQRIANGELGQGELQQWIRDSRFNRDELGQLGAAINRMQGSLSDLVSEIAGSVSQLSSAVEEVSAISSQSASGMAIQQNEVSQVATAMNEMQSTVNEVARNTTDAMSAAKDASRTSAAGSEVVRSSIASIEEVSVKIEQAGTVVQQLEADSANISVVLDVIRDIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQDSTAEISKMIELLQSRAAEAGNAMQLSRHQMQESVGLARDAGTSIDTINGAVVRITDMNTLIATATEEQNAVTEELNRSIVNIHNAADENAQGAHQIAQACGELSKLANTLHHMTQRFTL
>NZ_CP023817.1|WP_098968912.1|630386_632474_+|methyl-accepting-chemotaxis-protein
MFRSIKHQVMFFGGCILLATVLSVVGYSYLSLATMQGGIQGEMRETTRQDAGRWLMALAGQQAGEIAGTFEQALNTAETLAAMLAGNVHQPRPLDRATVTALLKDVAERNRDFLSIYSGWEPNTFDGQDSAYLTDGVHSQATGNFAPYWSRGPAGFTIKPLGDYYSKSLSKTGIRASEWYLCPMEGKAACAVDPSVYTVNGQPTLLTSFVVPVLDQGRYLGMVGVDYSLNYLQQLAKQVSGQVFSGQSRVRIISPHGIIAADSAQPDVIGGRLEESGLMALLNKGEASSQQVSGQLRVLVPIHLKGVTQAWGIIIEVADTALFADADQAEQARAAGFSESLWMQLLVGIVVACLGLVGLAWAAGSISLPVQQTASMVGRLSAAGGDLTQRLNVMRRDETGELAEGINRFVSTIHHIVSDTAQSGRDLQLAARQSAELAQQGLSNSHRQLEEIELVAAAIHEMASTADSVSSSAQITADAVDETRKAVHRGQYVVSNSAGGIRELSVQVDVVAQRIAELQQQGQQIGSILDVIRTISEQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLASKTQASTKEIQGMIERLRQTTAEAVSTMGEGKNLSELALQDAELAVTELATIVMSADRIQDMATQIASAAEEQSKVTDDISRNVSNIHEAATASTRLANQQDEQSQQMHKLASDVMDKIGRFRY
>NZ_CP023817.1|WP_098968911.1|629468_630125_+|GTP-cyclohydrolase-I-FolE
MTTLSQEALLVRAALEAQGLETPLVANELNSQQKREKIEGHMRSIMETLGLDLADDSLAETPHRIAKMYVNEIFSGLDYSTFPKVTVIENKMQVDEMIMVRDISLTSTCEHHFVTIDGLAHVAYIPRGKVIGLSKINRIVQFFARRPQVQERLTQQILLALQTLLSTKDVAISIRATHYCVKARGVMDSTSHTTTTSLGGVFKTQPDTRAEFLGGLRG
>NZ_CP023817.1|WP_172953944.1|627930_629163_-|molybdopterin-molybdotransferase-MoeA
MTMGFDTSGLLPLSDALQGMLEQLACCCDSQQLPLPEALGRVLASDIASPLAVPPFDNSAMDGYAVRLADLAAGTPLIMAGKAFAGQPYQGEWPAGHCVRIMTGAPVPAGTDAVVMQEETQADGDRITFLCEPTAGQNIRLAGSDIGKGACVLPAGTRLTPREMPLLASLGVATVAVRRPLKVAIFSTGDELKPVGTPLAHGDIYDSNRYGVRAMLARMGCDCLDLGIIPDDPAQLRAAFIRADEEADVLITTGGVSVGEADFTKQLLDELGEIGFWKLAIKPGKPFAFGRLPRAWFFGLPGNPVSAMVTFDQLVQPALAKLAGQQFVRPLQLQAIAVEPLKKSPGRLDFQRGILSQGPNGLEVRSTGSQDSAVFSSLSQANCYIVLERERGHVAAGETVTIEPFGGLLL
>NZ_CP023817.1|WP_098968909.1|627178_627934_-|molybdopterin-synthase-adenylyltransferase-MoeB
MSEILSDAELLRYNRQIILKSFDFEGQEALKQAKVLVIGAGGLGCAASQYLAVAGVGQLTLVDFDKVELSNLQRQVLHSDERIGHHKVDSAAQSLRALNPWLNVETHAAVADEALLDTLLPLHQLVLDCTDNLAIRNLLNQKARQHRVPLVSGAAIRLEGQLCSFTWQEDEPCYACLSALFGEQALTCVEAGVLAPVVGLVGSLQALEAIKLLAGMGKSYSGRLLMIDGLSGTFREMKLPKRPDCPVCSHP
>NZ_CP023817.1|WP_098968908.1|625897_627117_+|IS3-family-transposase
MGQGVKRTLRDYSLTFKLALVEQIEKGELTYKQAQVRYGIQGRSTVLVWLRKHGRQDWSQGASVRAGRSITMPDPDNQMPEQRIKELEQQLALMSQKAQFFEAVVDVLKNDYGVSIGKKATRQVLSQRQVERLTIVRACLFLGISRQTYYKRNRVADLRHAQGLQVVRFVRQVRLRQPRVGTRKLHYLLQGQDDGGLKVGRDRLFRILAEHRLLVQPRRAYHKTTHSFHRFYRHPNLLKAGPEQVTPVAPEQVWVADITYLPARSGPLYLSLVTDAYSRKIVGHHVHEGMHAESVAMAFKKALKQRRGGGELIHHSDRGVQYCSGLYQSLHERHGVKCSMTDGYDCYQNALAERVNGILKGELLLQSPQDLVQAREMVREAVDIYNVERPHHALKYRTPDAVHRGF
>NZ_CP023817.1|WP_098968907.1|625496_625787_+|Bor-family-protein
MKKMVLTAAVAMMITGCAQQGFTVHSGNAVEPTKEVTHHFFISGLGQSKTIDAATVCNGADKVVRVEAQHTFVNGLLAVVTFGIYTPREARVYCAG
>NZ_CP023817.1|WP_098968906.1|625031_625325_+|Bor-family-protein
MKQVVWMACCALLLSGCAQQTFFVHEGNPGQPTREARHDFVLAGIGQSEMVDASLACHGDPKKVVRVEMQQSPQDVLMAILTLGIYTPRTARVYCNL
>NZ_CP023817.1|WP_172954083.1|624258_624996_+|hypothetical-protein
MTFSIYMDPGALESDRYAVGVLQNWYQRARKIQDSSEEFDFSRSRFHKDIYLSGMFMYVLAPNLCKAIANALGPEQVSMTTLRHAFASCGFNLGEVAGDAQPAADVMIDEIVARLAPQLGQRDTTSLVDEIVSRLGEQQPAEMWDELRQGLPAVLDHDQLAEAIAGKLPLTGAEQDLAPLASSIQLLSRQLEEQSRLIREQHRLIQRLASAPARQNAVGTEAEPLIEDLSSQVANMKKVKAKGIF
>NZ_CP023817.1|WP_098968905.1|623219_624245_+|StbA-family-protein
MAIDDGSTNVKVSWIENKVLKTVISPNSFRKDWKSAALRKDKKIYNYEIGNTKYTYDATSDKSLATTHVEYQYDDLNLLSVHHALLQSGVTPCDVAITVTLPITEFYNPDDCQRNEEKIEKKRRNLMRPITLNKGELFNIVSVEVMPESLPAALSRLIGSGCNEFTKTLVIDCGGTTLDMGIIVGEFDDVSDVYGNNEIGVSMVTDATRKALAAADSDSSYLVANEFIKRRHDMSFVRDVVNDESQIPKILEKMQNKIDELGTQVAHEAKKFAKNPNRVYLVGGGASLIYDAIKAAYPTLGDRVELLDDAQSALAREICLYTTEEDEVYREASVMAEVDDE
>NZ_CP023817.1|WP_098968915.1|636406_636823_+|hypothetical-protein
MTKTILFGNDEVRQNPVRFVLNELYHPPKQPMTALGIVSALVPLFGFGWQAMTQDPESQLRHEIRKRVNKHRTDEANLILILQLAAMFDCNELEVALPYVLSEQQLSVIRTRLPRWQLILEQQQLLAKFIPAAATGKS
>NZ_CP023817.1|WP_098968916.1|636852_637755_-|LysR-family-transcriptional-regulator
MDQIAAMRTFIKVVECQSFTKAANQLGISVAMASKLMQQLEESLATRLLSRTTRQVNPTEAGQFYYQRTLALLAELEETHSQLTHHNQQPHGTLKLSVPMDFGYLHLSPALPLFRQRFPDLKLDIEYSDRRVALVEEGFDLALRIGHLSDSSLVARQLATIKLALCASPAYLARKGTPQSPEDLKQHDCLVYTLTQPEWHFKQGGEAQSIRPQGPLRANNGVALTRAACDDQGIILQPTFIVGEALRAGQLVSLLPEWEKGEVGLYAVYPHRRFVSAKVRCFIEFVQERYLAPQKWDAPA
>NZ_CP023817.1|WP_098968917.1|637864_638425_+|YceI-family-protein
MKMTKALLASCLFMATPLMAADYDVDAAHTTVQFKVGHLGFSELVGRFNTFSGTFSMDDANPAAAKASFEVEAASVDSNHEARDKHLRSPDFLDVKQYPKMTFVSSAYEGSKDKGVLKGTLTLHGVSKEVAFDLVKIGEGKDPWGGYRSGFNASTTIKRSDFGVSYMLPGIPDQMNINLFVEGVRK
>NZ_CP023817.1|WP_098968918.1|638424_639162_+|hypothetical-protein
MGAELLLQTLAAPLGAALLSWRWPRLGYLWGALALWLVGSLLGGLYGIPAKAWQWLPLTLLVPAIAAQVNDLRGSLLLFVVISALVWWQGLASVLASEPMIWLALLPAIFWFGWSGLRGDSHEGLGFALGFIWLALVIGIDGSLLIAQLAGALAAFAGFRVLLATFVGIKVAPAGLALALAFVQMLAWQYVEVPLVVLLPVWLLPLLEWALRDKRLPLRWGALILLAAAGTGLSLWWVWPAASLY
>NZ_CP023817.1|WP_098968919.1|639357_640482_+|adenosylhomocysteinase
MRSQGSEHLFFRHFTGQGRIDGLCILLVTHLLPDRPRFIDALGQIGRIGAILPKPKSVHGPTLEWVSQHYPVLPLNRHWTNDPDSLIQQIAPLVAPHERLLILDIGGYFARTQVILSEYFGPRFLGVVEMTENGHQRYEQEVLATPVVSVARSPLKQAEDIQIGLSVVYSAESLARTLNRTFNVCEAVLFGYGKVGRSIARDLRGRNLHLGLVETDVLRQVEALSHGFRLITKAEALGRAELVICSTGNGSLDLADLQALRPGTMVASVTSADDEFAFSLAQLPWPSEEVCPHVLALNRPDGTQIYLLNRGEAVNFVHGAVIGEYVYLVLAEIMEGIRMLAAGPLAPGLFELPESAMRTIARHWLADFHGVDQH
>NZ_CP023817.1|WP_098968920.1|640559_640868_+|SelT/SelW/SelH-family-protein
MTESETLISKPRIEIRYCTLCRWMLRAAWLAQELLSTFDSDLGEVALVPASKGEFRILVGGVQVWDRVVDDGFPEAKEIKQRVRDVIAPARDLGHSDRKTAE
>NZ_CP023817.1|WP_098968921.1|641012_642236_-|peptidase-T
MDTLLERFLRYVTFHTRSDETNPACPSSEGQLIFARALQGEMTALGLTQVTLDEHGYLTGCLPGNQPDAPAIGLIAHMDTADYEAEHVVPQLIENYQGGDICLGKGDEVLAIRDYRFLKNYLGQDLITTDGTTLLGADDKAGIAEILTAIDHLQAHPEIPRGDIWVGFTPDEEIGRGANLFPLDRFPAKWAYTVDGGEQGELEYENFNAASATVRFIGNNVHPGTAKGSMINSQTLAARFHTAMPAAETPECTEGYEGFCHLAQMSGTVEESTLHYIIRDFDDQRFAARKAEMESRVAAMQAEYPKARIELTLTDSYRNMRSQIEPHMHIVQLAKAAMEAADVVPKIKPIRGGTDGARLSFMGLPCPNLFTGGHNFHGKHEFIPLQSMEKSVATLVELVRLTAAWRA
>NZ_CP023817.1|WP_068976981.1|643193_645098_+|biosynthetic-arginine-decarboxylase
MTNWSSKDSLKVYNVPYWGAGFFNINDAGQVTVAPDKSRPDAHIVISDAIEQLRQSGLTTPVLLRFPDILKSRVDALFNAFGQAIEKSGYQGEYLCVYPIKVNQQRRVIETISQSYSDKPRLGLEAGSKPELLAVLSHHHDQGSVIVCNGYKDREYIRHALLGNLMGHKVYIVVEKPSELEMVLDESARLNIKPNIGVRAKLASTGSGMWESSGGSMSKFGLSASQILALVERLRSLDKLDCLQLLHFHLGSQIANIRDIQGGIRECGRFYSELRRLGVPIDVVDVGGGLGVDYEGTRSQSHCSANYSLSEYANNVVWGIGDVCREFDLPHPTIISESGRALTAHHAVLVTNLIGAEGVEMSDISAPDEDAPTILQNMWKGWLDLRSEDPSLLEIFHDSVADLGDVNTQYTMGLLNLEQRAWAEMLHQNTCLALKELLNPVNRNHRALADELSEKLADKCFANFSLFQSLPDAWGIGQVFPVMPLTGLERPLTRRGILMDITCDSDGQVEHYVDGLGVESTLPMPEYAENEVCHVGFFLVGAYQEILGDLHNLFGDTHCAEVWLDDEGKMDIRNIVRGDTVDQLLRYVNIDPSVIRESYQRISAHPALDEATRKALLDELELGLQGYAYLEDEE
>NZ_CP023817.1|WP_098968922.1|645220_645511_-|hypothetical-protein
MARYQFFTVPASNRQQYTFIDMASPTFLHEKAALLTQGFEVEEDFIDATSPQEAVEKYQSNFLYVADEIGKSDSSYAAAVAMLEIGKGLWGSKTRR
>NZ_CP023817.1|WP_098968923.1|645773_647780_-|methyl-accepting-chemotaxis-protein
MKWIFNPAIRLGNQLSFKYKFLLWSCLMLLPLAYSMANLLGRLQDDSEQANRELAGVVNLAPVPAIEQALLTHRNLVTRHAYEVDPVGDDQVKAAAQAVEQSLQAFADTRQNNPSFEVLQQGWAALQSEAGKLEVEQSNLRHDKLLTGVRHLYKHITASSSLIQDPALGTYYMVILTSERLPQLRDLLAQVRDRAATIADFGLFQAEGYSGLRFRLDLINATLQELEADLTLLYQIEPAYRAELGQQTDALMQLVRQGVETMENKMMKDQLVQLSTKEVQALGDNMDGAITALAGHVRQRLETDLHQRLEANHRHFWWVTAPLTASLLLYLYLMIGAYLSLRETVGRVRDIAARVNARDLSQHIEIVGQDELAAISRDYNVTLETLRTLMLRVRENGVTVVESATDIEARTCRSQEVIADQQGETHQVATAIKELAATSQDMAGNALQAARMTQEAQNVVGQGEDVVERTIKAIDHINREVLRTADTIGQLEQQCSQIGGVISVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLANRTQGATVEIQKMIEQLQSGARASVTAMSAASHEAQEGVGLAQEAKQAFGAITEKVDRMVDTNAIIASAIEQQGAVVNEIERNVVRISDGSDEALQVANAARDAARQIHQLTEQLRAMVQSFVL

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Crispr_ID: NZ_CP023817_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_2

715210-715306

Orphan

Consensus_repeat	Method
TGTCATTTCCGTGCGGTAGCTATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023817_2

>merge|NZ_CP023817|2|715210-715306|CRISPRCasFinder
TGTCATTTCCGTGCGGTAGCTATGGCAAATGAAAAGCAACTAGAAAACGTGGCTTGAATGAGATTCGGGAATTGTCATTGCCGTGCGGTAGCTATGG

>NZ_CP023817|2|2|715210-715306|CRISPRCasFinder
TGTCATTTCCGTGCGGTAGCTATGG	CAAATGAAAAGCAACTAGAAAACGTGGCTTGAATGAGATTCGGGAAT
TGTCATTGCCGTGCGGTAGCTATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_157774519.1\|713460_713904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098968979.1\|713854_714502_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP023817.1\|WP_098968980.1\|716941_718135_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|130083
NZ_CP023817.1\|WP_098968985.1\|726639_727437_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP023817.1\|WP_098968977.1\|710648_711638_-\|DUF481-domain-containing-protein	unknown	unknown	gnl\|CDD\|377313
NZ_CP023817.1\|WP_098968981.1\|718347_719937_+\|polysaccharide-biosynthesis/export-family-protein	unknown	unknown	gnl\|CDD\|224512
NZ_CP023817.1\|WP_098968982.1\|719988_720984_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|129488
NZ_CP023817.1\|WP_058055852.1\|716206_716857_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP023817.1\|WP_042021205.1\|708193_708919_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP023817.1\|WP_042021200.1\|706340_706829_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|236773
NZ_CP023817.1\|WP_157774521.1\|724960_725593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100053
NZ_CP023817.1\|WP_098968984.1\|725700_726498_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP023817.1\|WP_098968972.1\|704497_705346_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225660
NZ_CP023817.1\|WP_098968978.1\|711707_712649_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP023817.1\|WP_098972425.1\|715417_716203_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP023817.1\|WP_098968975.1\|706977_707949_+\|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF	unknown	unknown	gnl\|CDD\|236964
NZ_CP023817.1\|WP_098968973.1\|705342_706065_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP023817.1\|WP_157774520.1\|721175_724601_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|227897
NZ_CP023817.1\|WP_098968976.1\|709164_710580_+\|SLC13/DASS-family-transporter	unknown	unknown	gnl\|CDD\|238535
NZ_CP023817.1\|WP_157774522.1\|727543_727936_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098968982.1\|719988_720984_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	gnl\|CDD\|129488	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. [Energy metabolism, Sugars].	1.32396e-108
NZ_CP023817.1\|WP_098968979.1\|713854_714502_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	3.13416e-18
NZ_CP023817.1\|WP_098968980.1\|716941_718135_+\|sugar-transporter	gnl\|CDD\|130083	TIGR01010, BexC_CtrB_KpsE, polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.79736e-125
NZ_CP023817.1\|WP_098968985.1\|726639_727437_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	6.04774e-132
NZ_CP023817.1\|WP_098968977.1\|710648_711638_-\|DUF481-domain-containing-protein	gnl\|CDD\|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	4.24852e-16
NZ_CP023817.1\|WP_098968981.1\|718347_719937_+\|polysaccharide-biosynthesis/export-family-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	2.37341e-24
NZ_CP023817.1\|WP_157774520.1\|721175_724601_+\|HAD-IA-family-hydrolase	gnl\|CDD\|227897	COG5610, COG5610, Predicted hydrolase (HAD superfamily) [General function prediction only].	5.87526e-34
NZ_CP023817.1\|WP_058055852.1\|716206_716857_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	2.12416e-92
NZ_CP023817.1\|WP_042021205.1\|708193_708919_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	1.37261e-71
NZ_CP023817.1\|WP_042021200.1\|706340_706829_+\|C40-family-peptidase	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	1.26553e-43
NZ_CP023817.1\|WP_157774521.1\|724960_725593_+\|hypothetical-protein	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	3.13656e-20
NZ_CP023817.1\|WP_098968984.1\|725700_726498_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP023817.1\|WP_098968972.1\|704497_705346_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	5.10905e-61
NZ_CP023817.1\|WP_098968978.1\|711707_712649_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	1.32428e-96
NZ_CP023817.1\|WP_098972425.1\|715417_716203_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.5549e-35
NZ_CP023817.1\|WP_098968975.1\|706977_707949_+\|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF	gnl\|CDD\|236964	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF.	0
NZ_CP023817.1\|WP_098968973.1\|705342_706065_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	7.59433e-33
NZ_CP023817.1\|WP_098968976.1\|709164_710580_+\|SLC13/DASS-family-transporter	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	2.90949e-63

>NZ_CP023817.1|WP_098968979.1|713854_714502_-|winged-helix-turn-helix-domain-containing-protein
MISLNESSGELIWDGTVIAQLSSSEIQVLQCLLERPDELVEKEILLEAGWPSKVVQQNSLTVAIKNIRKALAEITDGPIIETRHRKGYIFHPAVNQNKNIELDSTIDDDVFSQDNSIEAISSDYIHERNIHKPGSILANIIFYSAFMALALWSLFITTLDTAIHCNKINKANLCGYSELSDADITYIEQTVGESAGTYLYGYDKELGQLQIHKMD
>NZ_CP023817.1|WP_157774519.1|713460_713904_-|hypothetical-protein
MDTIKNWASFKSIKWISFAILLVYSVTPFINGLGCDYQQQYERDDFSFYSTCKFGYAKSVVHDKATGEVLKHEGLLGKRGDTVIFIANRVTRTAPHPDLHSNVYSVMHNDFLYIAKIIHKDKEDWIVMTYPYYRLQKVKTLGKQSFW
>NZ_CP023817.1|WP_098968978.1|711707_712649_-|L,D-transpeptidase-family-protein
MRLPKLKPLPLTPALSMLLAAILLCAAPAEAKRYPLPPAGSRLIGELEDYIIQQDEHLELVGKHTQIGFLALLEANPGVDPYLPKPGTRLTLPTQMLLPDVPREGIVINLPELRLYYFPKGKPEVVVLPIGIGDIGRETPEMTTTVIEKNPDPTWVPGPMVRKSWLEQKGITLPAVVPPGPENPLGKFAMRLGYGKRDYLIHGTNKDFGVGLRVSAGCIRLRPDDIEALFKMVPIGTPVRVINQPVKVAIEPDGRRWLEVHSPLSRTEEELENGAPLVLSPAIEHFIAAPEVAQDEVSAALDSKNGLPRPISS
>NZ_CP023817.1|WP_098968977.1|710648_711638_-|DUF481-domain-containing-protein
MKYLPLVLILTSHCLWAKDILWMNNGDRLTGTIEEIGEESVRIALPYTGAVTVQRDAIKRWRLEKQDKPKATAKGGIKLFKDEQNERNAWLWTGNGDLNVKLKNKDKHTNNVNFKGKTELANLDWRYSLSGEYSYETSDSVTDSHDYQLNPTLDYFFTQQWFLRTSLDAEYDMLDKDRYLYMDYGSGPGYRFWNDKRRRLELIAQGGLSRLYFREDSEITEIFLGERVIDYPFVGMNWDYRQPFSIWQEKMELFSQGRYLKYLAQPSPYFTRNQDLKGSIGLRYYFNDHLRLSWSSELDWEDADILIDTGSPAPRESEFRHLLSLGASF
>NZ_CP023817.1|WP_098968976.1|709164_710580_+|SLC13/DASS-family-transporter
MPINHKIILPLLLSLAILLIPTQWIPLEGITVVEQRVVAIFVLAALCWILEPIPIFATSVLIIVLELLLLSDKGLWFMTAGKSEPGFGELLKSTEVMATFASPVIMLFLGGFFLAIAATKYQLDINLARVLLRPFGRDPKIVMLGLMLITATFSMFMSNTATTAMMLAILSPVLAVFPDKDPAKIGFVLAIPLAANLGGIGTPIGTPPNAVALKYLTGEHAISFGQWMGFAVPFVAVLLLLGWFLLGRFFPSTLKRIDLKIEGRFMQTPRAWVVYLTFITTIVLWLLGDLHGMSSYVVALIPVAVFLTTGIITKDDLHKISLDVLWLVSGGIALGLALEDSGLAERLITHIPFHDYSTLAVLVGACLLAVVMANFMSNTATANLLLPLVAALAVSMPELAEWGGSHTLILAVTISVSLGMSLPISTPPNALAHATGLVESRQMVRIGVIMGLVGTLLAMVWIYQVAAWGLI
>NZ_CP023817.1|WP_042021205.1|708193_708919_+|MaoC-family-dehydratase
MKVVDFLKRKREILAQHPFELKDWLSPAIRDYWREFQQKAHLHPLLGRVLDLQSESQSEQQQDAATVAQVANGQPIMAQEPVMALSGEIGELYGVLQARVGEETHVGEWLHISQQMIDQFAAATGDNQWIHTNPERAAAESPFKTTIAHGFLTLSLLPQLTGSVDEATPEFPTARMVVNFGLDQVRFPYPIKVDSKIRARTKLARVTPIKGGLELLKEIKVEIEGIRRPGCVIESVTRIYF
>NZ_CP023817.1|WP_098968975.1|706977_707949_+|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF
MKPRIPSAGGPQSGDRKSGLHSRNRHQAGYDFEALCLRTPELAAHVFTNDYGTRTIDFANPDGVKTLNRALLAHHYGIAHWDLPAGYLCPPIPGRVDYLHWAADLLAESAGQVPTGKGVRVLDIGVGANCIYPLLGCREYGWRFVGSDIDPVSVKAATLLTKSNGLGNQIECRLQGNANHVFRGIIGPKERFALTLCNPPFHASLEEASKGSERKLRNLGKEVTGTPVLNFGGQKAELWCEGGEAAFLANMIAQSKEFATQCLWFSSLVSKKENLPGAKKALARVGACQVRVIDMAQGNKVSRILAWSFLDEEGLRNGWSSAR
>NZ_CP023817.1|WP_042021200.1|706340_706829_+|C40-family-peptidase
MLLLVALGMVGCASAPQTEVASKIEVSMVEPVIEPEASQTPDVNEILTVYKEWRGVPYRMGGSSQRGIDCSAFAREVFRNAVGVELPRDTRSQVHEGTRVSKQDLVEGDLVFFKINRRLNHVGIYVGNGEFIHASTRAGVTRSKLDSQYWRSKFWQARRIDI
>NZ_CP023817.1|WP_098968973.1|705342_706065_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MIETDLFLLNSAAVCQQQLLQLPQWLSDNERHIWQTITHPARRQEYLISRALLRQLLAERLQQTAASLQFCQDEHGKPRLHDNGWHFNLSHSGHWLVLALCPQGPLGVDLELGKRRHHPLPLARRFYAQSEYEWLCALPANEQERAFYRLWSRKEAVLKAHGGGIAAGLEKVCFIPNEEWRLDNRLDNLTYQVQDWPFANGWLSLAGAATTVNVYRLDERLNCLPINPMLLTTLIKESNS
>NZ_CP023817.1|WP_098968972.1|704497_705346_-|tetratricopeptide-repeat-protein
MIVDITPQNFHAELIDASMKKPVVIYFYAPQMPECQGMTPLIESLVGPVNEQVTLAKVDMNDPQLQPLASQLGLRALPALVLFHQGRPDEQSIIEGPQDEATLRQYFAAFAPKEEEELLSKGQQALTEEQPSIAYAHLTKAHQLAPERHDISLWLIQAALDLNLLEEAQERLGTIPMVAQDDHFLTLSSRLALALQAADSPELRALEARHAEQPNDFSLTQELAVQYHQAGRQEEALSLLLEILKRDLAFGDARKTYLDILATMGSTAAAQNYRRKLYSLLY
>NZ_CP023817.1|WP_098972425.1|715417_716203_+|ABC-transporter-permease
MLIQRRSPAVVLKDVTFGLLMRELKTRFGNYRMGYAWALLDPLITIAVFCVIFGIRQRNGFGGVEAPVFIASGYLPFLMFQNTANRLISAVSANKGLFCYRQVTAFATLFSRFVLESIIGILVAIVLILILVWSGFDAIPDDPLAVIMGYGTLMIFSLGLGTLLCIVSSLSAEVDKLIPIFMRPLLWISAVFFPLAAVPQNYQHLLLWNPIVHALELIRSGWIAGFQTQGGSWNYLFGTTLILLAFAMSAYRLSHRRLIAS
>NZ_CP023817.1|WP_058055852.1|716206_716857_+|ABC-transporter-ATP-binding-protein
MITLENVSKYYPTKFGRNYVLKDVNFTLPGDKNIGILGANGAGKSTLLRLLGGMDMPSRGKITRHSRVSWPLALSGGFQGSMTGRENTRFICRIHGIHDTRRVEEWVKGFSEIGQHFELPIKGYSSGMKSKFSFAVSMAFDFDIYLTDEITSVGDARFRQKCIDVFKQKRETASLIMVSHDMNTLRKQCDMGIVLNNASLTLYPDIEEAIAVYQKL
>NZ_CP023817.1|WP_098968980.1|716941_718135_+|sugar-transporter
MNTSTIKTHIGRKLRKFRRDPKRFLIDSRGYQVAHFSWQKAVRLGSFLWVLLCFGVATLYYVAIASDRYVSEASIIVKQADQLKMMPDALSMLGLGGSNHQDVQVLHAHLGSWDMLQRLDKALDLKGHYQSGHADWLSRLPRDASNEEFLAYYRDHLTLTLDELSGILTIRLQAFEPEYAREVVALMLKEGEGFINRLSHQVALEQLAFVESEVARSHERLQAERDKMLAFQNRHKLMSPEATSSAMLGLVSELEAELVRQDTELKRLQIYMNPKAPDVVAAKDRVDALTRQLAQEKRRLTSNDEQSLNEVNADYQAVQVQTQLAADIYKTGLVSLEQARVEAYRKLKHLLVVSTPSAAQEAHYPRRLYNLATIGVLLCLFYGLVVMGLATLREHQD
>NZ_CP023817.1|WP_098968981.1|718347_719937_+|polysaccharide-biosynthesis/export-family-protein
MIPQAYGLEVAQEAAPVRKVVSDTQTRDPVFGNWLFRGEFARESFNGFNPDYRIAIGDKLQVQLWGGVEFEQSLLVDHQGNIFLPKVGPVKVAGVRNEQLNDTLLGAITRVYQKNVSVYATLDVSQPVKIFVTGFVNQPGLYAGQSGDSILYFLDKAGGISPERGSYLDVALKRGGKTLRNFNLYQFLLNGNLQPTQLRDGDTLVVAPLRYQSTVRGKVANANKFEMATPHMTLAELLQLARPDADATHIRVSRNQGEDIRMDNYPLSDTATLARVMVSSGDTVEAIADKRYASIAVRIEGEHDSEQEVVLRYGARLGEVLNGLKLTRDADINAIQLYRDSVKVRQKEMLGSSLKAFEASILTARSASDGEASLRKSEADLLMQWVARAKEIEPSGQVVLANAPNLEEVRLEPGDIIRIPRQTNLVMVHGDVMFPNAILADQKRTVADYINLAGGFTQKASNSRILLLHRDGTFSQIEKSELEDRNIRVTPGDEIFVLPQVETKSLQITKDFTSVLYQIAVSAGVLVAL
>NZ_CP023817.1|WP_098968982.1|719988_720984_+|KpsF/GutQ-family-sugar-phosphate-isomerase
MKSQPSVDIRSFYDEVPFGGDVIDSIKQTFKQQGETLLELAATFNKAQYKLALSLMIQCKGHVIICGMGKSGHVGRKISATLASTGTPSFFVHPAEAFHGDLGMITPDDVVVLISNSGETDEVLKLIPSLKNFGNRIIAITGGMPSTLAKNADVVLEIKMQGESCPNNLAPTTSTTLTMAIGDALASALMNKRNFMPNDFARFHPGGSLGRRLLTRLKDIMSTKLTKVAPEVALKEVIVEMTRDQHGIALVMEQDNLLGVITDGDLRRAMLRHDFDLNTFKAKDIMSLNSITATHNSMLSDAEELMREQKIKQLLVVNDADTPVGIVDFYN
>NZ_CP023817.1|WP_157774520.1|721175_724601_+|HAD-IA-family-hydrolase
MKILYYIEPWIEMNWPGFRFGSLNGYLNAEINGLISQGHEVLLVIGDGLELEAKQKGFKLDKLNYKTIRQKHLRKIFCDYHKASMSWYKNEYTEEQLQSMVTLIHNVLDGYVPDVIMTWESPIPFMSVAFPDALVVYENYGAISRHPFPTTQAIDIFGLFKNSYIAQLKSNLESGDILIPDLTKKQSYNLSKIREKIKKSLNLSNPFANYALHNNGFKYVALVPLQVSGYYAFDGNVPYKSQFDYLCHILDNMSSDVLVVVTEHTSYPSIFTPRTLNYLRKRYSNFYWHEELNEVKGASQYLLPLVDFVVGTTSSVLLQAVILDIPVKVIGDSHVSIFSSPHGLHRAERIVNRHHKNSFDKIIYHLITKYWHNQEEKVHNGAWLSNYLDNTLNKFRNNKLNINFYLDYKLDEERVIKDILNGISVSDPIIINKKAPQKSNKLKLPSLHEIECNHRQLIDSAEWVSFDIFDTLVQRATRTPKDIFIYVGLAMEKIIGLEPRVFASLRVKAEKTVRDNSIYEEVTIFEIYNEIISELNLSYDIVQKLVNIELEAEVSFSLPRKAGIELLSYAKKMGKKVYLISDMYLEKSHIIEIIKKHNINIPAEDIYVSSNFRLQKHSGNLFKKFISDTKVKSESGLHIGDNPTGDVKSAELNGIKSLHIPKAYDLFKGNVFFHKEISNKSSFNSSLYSGLLISKLYDNSLTRADGVTCGSKYLLGYSVIGPLLVSFSQWLEKKCIDNGIDDIYFLARDGKVFKKAFDKTCSNLNLSTHYLYASRRSINLPSITTKAQIKEIMMAPFNPCTLGYLIKNRLGLTPESIDPAVAKKFNFEKVVTRNDHDIARFIDAAESRIINNATAEREALDVYLKSKITHNKKIAIVDIGYKGSMQQSLSNLVDNKILGYYLVTTDEIGKLPSEGFLENRVNKAGSSPFWQGVALAEWLTLDGDTSVEKFTVLDGKAEPCFKQKQAHDISRQLITKHIHEGAFDFVDDWTIHSSTYDEIDLSCVKHNYYSLLATPSLTDIKLFEETQLEDSYGGRDDRWLVGPLKQHITDKELQNLHKSYSWKGAVSMLNKIYTLQHTKTPITNTSETISGNSRIRKFMVIKKIKKFTKSPTRFLIDSQFSLLKIIGKKINNFKIKREFRL
>NZ_CP023817.1|WP_157774521.1|724960_725593_+|hypothetical-protein
MENKLIVITASGERLIKTSVDGLQVSFSGTGNSVTVYEGTDFHKCQIICGSGTNIHIGKTRHHVKHMIIAGRRATNAVVRIGDNFSCVGCQINMNESGSVYIGNDCMFSFGITIWTSDGHTMFDNDTLECLNQGKDVIIGNHVWVGYHVNLMKGSVVSDNSVVGACSVVVKHFNDTNVAIGGVPAKVLRHNINWSRQSPENYMKRTNEMT
>NZ_CP023817.1|WP_098968984.1|725700_726498_+|3-deoxy-8-phosphooctulonate-synthase
MFLIAGPCVIESEQLVMDVAGRIKEITDKLGMEYIFKSSFDKANRSSTGSFRGPGMERGLQILQKVKETYGLRVLTDVHEDTPVEEVASIVDVLQTPAFLVRQTNFIQRVARCGKPVNIKKGQFQAPWDMEQVVKKCHEVGNQDIWLCDRGTSFGYNTLISDMRGLPVMRRTGCKVVFDATHSVQQPGGQGATSGGQREFVPVLARAAVAVGVDGLFMETHPEPAKALSDGPNMLPLSVMEEMLTVLAELDRVTRGHRFLEDALV
>NZ_CP023817.1|WP_098968985.1|726639_727437_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MAYKIVIPARYGSSRLPGKPLAMIGAKPMVWHVWQRALETGCPASDIWVATDDQRIRDVVAGFGANVVMTGIHHSCGSDRLAEVATIQGWGEDEIVVNVQGDEPLLPAGMIELAATTLAADAECGIATLACPITDMAQVMAAQCVKVVTNKAGQALYFSRAPVPWARDHFTSLQQGNVMPDSPSTHWLRHIGLYAYRVKTLKALSHLPPAPMEQLESLEQLRALWHGIRIAVATVDQAPPHGVDTPEDLARIQRHFLHERVTDVD
>NZ_CP023817.1|WP_157774522.1|727543_727936_+|hypothetical-protein
MKPVLVVNLIATYPTGRHPESCARSSWRVAAARVPDIDTVVGVYQGMVVAVIRGCSLVPSTPEVVGDDWDEGCRGRYYALGGEAFTDRDVSVWSLTRCPQLLVPLSSVQGIRYLSREEFDRIPMGNVQLK

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Crispr_ID: NZ_CP023817_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_3

1043808-1043937

Orphan

Consensus_repeat	Method
AGTTTCCAACTTAAATG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023817_3

>merge|NZ_CP023817|3|1043808-1043937|PILER-CR
GTTTCCAACTTAAATGTCCTGCTTGTTCGTTGAGCAGGCGGAGGATCGCTATTGAGTTTCCAACTTAAATGTCACTTGTGGTGTCGCTAAGTTACTGAATCGTTTGTTCTGCTAGTTTCCAACTTAAATG

>NZ_CP023817|3|1|1043808-1043937|PILER-CR
GTTTCCAACTTAAATGT	CCTGCTTGTTCGTTGAGCAGGCGGAGGATCGCTATTGA
GTTTCCAACTTAAATGT	CACTTGTGGTGTCGCTAAGTTACTGAATCGTTTGTTCTGCTA
GTTTCCAACTTAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_098969158.1\|1030146_1031586_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NZ_CP023817.1\|WP_172953958.1\|1048806_1049877_+\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NZ_CP023817.1\|WP_098969157.1\|1027960_1030144_+\|transposase	unknown	unknown	unknown
NZ_CP023817.1\|WP_098969169.1\|1053876_1056249_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235809
NZ_CP023817.1\|WP_098969165.1\|1046058_1046427_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
NZ_CP023817.1\|WP_098969160.1\|1032545_1034162_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|379756
NZ_CP023817.1\|WP_098969164.1\|1044137_1044806_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|375901
NZ_CP023817.1\|WP_042022277.1\|1050422_1051805_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NZ_CP023817.1\|WP_024941359.1\|1034222_1034522_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098969167.1\|1046877_1048710_+\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109
NZ_CP023817.1\|WP_172954088.1\|1052715_1053564_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|235419
NZ_CP023817.1\|WP_098969166.1\|1046431_1046803_+\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP023817.1\|WP_098969162.1\|1038616_1040377_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373965
NZ_CP023817.1\|WP_098969168.1\|1049879_1050311_+\|glutaredoxin-dependent-arsenate-reductase	unknown	unknown	gnl\|CDD\|182200
NZ_CP023817.1\|WP_153218868.1\|1035660_1037862_+\|anti-phage-defense-ZorAB-system-ZorA	unknown	unknown	gnl\|CDD\|274073
NZ_CP023817.1\|WP_098969163.1\|1040376_1043613_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_CP023817.1\|WP_098969161.1\|1037873_1038617_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP023817.1\|WP_080630556.1\|1034704_1035148_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP023817.1\|WP_157774528.1\|1031576_1032542_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP023817.1\|WP_098972461.1\|1052152_1052488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236927

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098969158.1\|1030146_1031586_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	4.11524e-05
NZ_CP023817.1\|WP_172953958.1\|1048806_1049877_+\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	1.86058e-151
NZ_CP023817.1\|WP_098969167.1\|1046877_1048710_+\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0
NZ_CP023817.1\|WP_098969169.1\|1053876_1056249_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NZ_CP023817.1\|WP_098969165.1\|1046058_1046427_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	8.20805e-12
NZ_CP023817.1\|WP_098969160.1\|1032545_1034162_+\|TniQ-family-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	7.96022e-20
NZ_CP023817.1\|WP_153218868.1\|1035660_1037862_+\|anti-phage-defense-ZorAB-system-ZorA	gnl\|CDD\|274073	TIGR02302, conserved_hypothetical_protein, TIGR02302 family protein. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.	0.00146905
NZ_CP023817.1\|WP_157774528.1\|1031576_1032542_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	3.0563e-06
NZ_CP023817.1\|WP_172954088.1\|1052715_1053564_-\|kinase/pyrophosphorylase	gnl\|CDD\|235419	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator.	1.48955e-125
NZ_CP023817.1\|WP_098969166.1\|1046431_1046803_+\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	4.19261e-60
NZ_CP023817.1\|WP_098969162.1\|1038616_1040377_+\|hypothetical-protein	gnl\|CDD\|373965	pfam15611, EH_Signature, EH_Signature domain. This domain with a strongly conserved glutamate at the N-terminus and a histidine at the C-terminus, is found in a SWI2/SNF2 four gene operon. Its strict-neighborhood association with SWI2/SNF2 ATPase strongly suggests a function in conjunction with it. The other genes in the operon are a OmpA protein and a TM protein. This has a DNA related function along with the TerY-P triad.	3.11421e-29
NZ_CP023817.1\|WP_098969168.1\|1049879_1050311_+\|glutaredoxin-dependent-arsenate-reductase	gnl\|CDD\|182200	PRK10026, PRK10026, arsenate reductase (glutaredoxin).	1.21183e-84
NZ_CP023817.1\|WP_042022277.1\|1050422_1051805_-\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP023817.1\|WP_098969163.1\|1040376_1043613_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	3.09723e-71
NZ_CP023817.1\|WP_098969161.1\|1037873_1038617_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	6.4083e-09
NZ_CP023817.1\|WP_080630556.1\|1034704_1035148_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	8.09849e-20
NZ_CP023817.1\|WP_098969164.1\|1044137_1044806_+\|NYN-domain-containing-protein	gnl\|CDD\|375901	pfam18475, PIN7, PIN domain. This is a bacterial PIN-like domain of unknown function.	1.19429e-21
NZ_CP023817.1\|WP_098972461.1\|1052152_1052488_+\|hypothetical-protein	gnl\|CDD\|236927	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional.	0.00208971

>NZ_CP023817.1|WP_098969163.1|1040376_1043613_+|DEAD/DEAH-box-helicase
MLGRWFSKFGKNKHDPVDLSPCWQADERGIVFAERIQSEPERWALVAYLEQLAEEEYVAVLSDRWLLTWRDMYRLMADADHESSLALLSLPHCTDLRPKLECRGSLVDPQFTVAITHWSDEVTGEHVELKRQGALVTTKKGQRLLNEASWQLCESLRDLARCQRDEPGEATNYEGWAVIRSVAKAANADMDGFLAKTVVVKPQRLALRPRKAEIDSCPVIEVGVDFPEQPVGFLSSFDATQRVQDRYRITQPDGTIAHVLIEPEIKQVLEAIKAIPGRRVAGDSALSLLRNPYALLGEVTSVVLDPEQHEQSLVDAGIYFHHFRLEPKCEAESGKIATVLLHLSPISREPLPDETLSFNSPGIFAPFVQELRFKLAAGMSAGFWQGFELELGDFDEQQLLDIEKLLDRWQREVSGELFDSLFELSRYGDRIIGLGEVVPVSSPFLTRTTGQDWLSSESNGIEESVGDVVAQINFDDAAALDELSKRIDEAFAEGAGHLCLPGSEQPVPLRLAEQIQKEWRKQIRSEEPTVQESMRKNSIGLLVEENIDEVGYAKWRQDAIQQARLSSPSLPERLKPEISLREHQLHGVAWLQHLFELSPEHVSGCLLADDMGLGKTIQLLTFVVDYLERQPSGDPVLIVAPVSLLDNWEAELRKFFYADDIAVMRLYGDALSEAKFRSYEIPESLRQQGVTNLLRPGWLQEARIVLTTYETLRSQEISLGRQSWAMVICDEAQKIKNPAAMVTRAIKAMKSKFRIACTGTPVENTLIDLWSLFDFVQPGLLGALNQFGREYQKPIEEGECKDLEALARLRSLIEPQTLRRTKQDVAKDLPSKIEDRTCRNLTMVSRQRSLYNQQIGEYRQRQLVQEAAGSKESFILPVLHKLKLVCAHPYCVEPDLWLREHSPKMRWLLEQLDNIRRSGDKVIIFTELRDVQREVQHAVKVRFDISPTIINGDTSTSSDSLNSRQRLIDRFQAVSGFNVIILSTVAVGFGVNVQGANHVIHFTRCWNPAKEDQATDRAYRIGQTKDVFVYYPTIRDADIQTFEATLDDLLDQRRSLASDMLQGKNDLQLSEFDGVLNK
>NZ_CP023817.1|WP_098969162.1|1038616_1040377_+|hypothetical-protein
MVDAISRLTAILESSVERVNGRYQERTLHSFSVLQRARSEVEARFDQAEAAPEPPKEKRHAALAAFLRNEPLTRRQWRLVYAGLVDCVEAGKQLLDDEKVFPRVSRHVSAHIDSRELVRRDWTALCFSYFGYEAIEPEKSQNWQQLRTYIRDGYRVLRNPEKLKAWMRVVDEHQELFQSEAGLRLGQQIFEGTVTDLTQLQTLAQIPTESWLWHQIVAVVQKRIAELDEAPFLARLPALLALMTINNRRHSDEIMAACLTRYHGCSCHVQPQANLIQAGLEIWGNPQLKSDQNRWRHHVAKPVCDMVGAWLAKQDLQHFFSLLKGEGEVDQARLFYWLRFADQMSYTRIVMGRDAQLNRDGEFVRFRDQNKGRLGDLSGGSPADNAVIMQIGDYIFVEFSHTGNACYVYRANSCGFNPDASALHLTHDLKQKNLAKGRWIHVPKPLKPDAMEGWQQKYDDELRLLGIVPNPQGANQLWNRVVKPKIVKPSVPSFQAPLGNNSESKSQVVNTPADRTVVIHSGGKGKVDFALLLEQLGENLRHYTDHREKGGAFHIEIKQRNTDDILLLRRNGFVVKTGSPFMFWKK
>NZ_CP023817.1|WP_098969161.1|1037873_1038617_+|OmpA-family-protein
MFGMKGAPASRRNDEAEKPFWISYADLMTAMMVLFLVVMVASLASVTQRIREVEAGEKQRGQDITRICQSLEILARKKSNTIKVDCRDNRISFGEAGRFGHNQYFLDPQGQQALQDVVPLILDVTDSPEGQRWMKQVVVEGFTDTDGSYLYNLHLSLQRSEWVMCALLDGRSQLQQSLSAEHQQQIRSLFLAGGVSFNNAKDSKEASRRVELRMQFYGLKEDKQQAAESAPQFSGLMTAERCQLEMR
>NZ_CP023817.1|WP_153218868.1|1035660_1037862_+|anti-phage-defense-ZorAB-system-ZorA
MNFTLLFDWLKHLEPSSVPTLVFCLVVLFSAFFCVFYLGPSFLVANKLKQASKGLEIQRELPASEKLEQATAMFAEPKYRAMNHAWKEYADTLHRQSELVEGESRLVAVRATSLSATFFSVPSIVETPLRTEVFKHLPGVLTGLGIVGTFLGLMSGLMHFDVSDPAKVTESVSRLLNDVLFAFVGSSIAIFASIVVTGLEKWRWGRCLQLLEKLTESIDELFKGGVGEEYLADLVKASNESAVNARQLKDSLVSDLRTMMQNLVDAQVQENLKLANTLSTSYQEVGTSLATQIGRSIEDSLKDPLEKIAGSVKQASGDQSGQVQHLLTDVLSAFMSKLDASFGQQFSGLHEMLGQSVTAMQSMQQGFVALVDDMRRAGESSSQQSATVIAQLLTDMQAGQASMQNGMNEMLSKMQTAVERMGSSGEDASERIAHQLERLFAESEARQQQIAEHLNSFIEQSQRSIGQGQEEVMTNMSTNLTQLGSQLNQMFQTFNANQEGMDAQHRLAQADIRNTTETVIGGLDKQLRETLQLVEQQRKEAQEVIELLGLQTREHLQQMAQGADKMRLAADRFDTAGSSVVQAGETTAKVLVSVQQVGGELAVASRELTTIIGEYRTHRESAAKVLATIESVVAGAQSEQSQRAQLINDLRQHGERMRDLNREATEYLDQIGNALAKGFNEFADGLNRNLVKTMGSLDSELDKAVKGLAGGIDDMKEGIEDLSELFESIKVRR
>NZ_CP023817.1|WP_080630556.1|1034704_1035148_-|DUF2384-domain-containing-protein
MTHVEQSPPTSNLSVLESLGLPRNWLAAHQHIVSGVSPEIVVKLSKLLGSNTRTICQMIGISRDTLNRQIKRGNRLSTAQGDRVYWAALAVDAAISLHRGDTAKTMRWLTRSAWGLGGEKPADVITTPMGAQAVIDLVGRIRHGIPC
>NZ_CP023817.1|WP_024941359.1|1034222_1034522_+|hypothetical-protein
MKVEAIVPTTQVVDILCDVCGASTTKSLGTQEFGTLEACWGYGSQHDGERYQVHLCEGCFFGALANLRQEHRLMNMFSDDYQPADPDQFGKIEGNRELI
>NZ_CP023817.1|WP_098969160.1|1032545_1034162_+|TniQ-family-protein
MLTSVIPTYIPGESAYSWVSQYFVHSAYSDRNHFCNQLFHCPAVRLHPALPGHIKAAAQAAGVDPQYLLHHGSAFPLFALTLNNKHQVHALAAAMLGEGRGIMALSGQAASKLRVGGACLKWCPACLLEDEKQFGCGYWHTVHQLYGVTACAKHELRLQTLAASAGGIDRRLLIPDPEIPCEPSRPSEQEIKLSTYITAMHRYLCVQSPTESLAELYQRWLGQQGYLTARGHLRSQPLLQAMTEFWQGLFADITPIVPPGLANYRYVSGLVHGDRSHHYLKHVMLMAFVSRSPAEFFSIEVQQVLPVPPARDAQAVERAVLRWLAEPLSMRQVARQTGYSVGYIKQLALRHNHPVEHRAQRITAAVARGIWRQAFMGVSRQQIAHCHGVSVGAVEGIIQSHQGLSDWRRHLRRVNRLREHRVTVAAYLAQHADVSRGCVEQVCRTAVTWLYKHDRAWLYQQLPAAKRAVHHPSVDWEERDRKLAEQLGLLAEQASSLSALERAVDRPDCLRKYKTRLPLSYALAVRLVAAYADQHPMP
>NZ_CP023817.1|WP_157774528.1|1031576_1032542_+|TniQ-family-protein
MEMILHRLELLPGEHLGAVVGRMHVLSTHGTFTATAQVLGLSSPQIRPHRLCHPDDPVLDTQFRARHVQRAWQDHSVGNYLASFLTPDEQRIVTSALAGRSQLRLRVTGLHNVQHQYWRWCADCIAEDYELHGMPYYHRDHQLPGVFHCYRHQCGLSGHCAGCGFSAKLLSEQLIPPYEGLCPHCGHWMGGYDGHFSERMKEIELASLALAQSASAFTLCALTQLVTDSMGISGEAMRTVKSIKTINAWFQQMDSQCDPLALTAYFTNSGGPGQVWQLPPQLRNARGYHEKSARDPLHPLAHLMMLQHAGVDLVGLLGSEG
>NZ_CP023817.1|WP_098969158.1|1030146_1031586_+|AAA-family-ATPase
MAAPQYFPHPNSKYRGNPYIEGLGLPLSTAQFYANCEIPFQCDLDLAGVDESLHSYFIRTAIDQLADVYTSPDEAYRLYDQIRRMIEAGYTRRNPVGADVRRLLAAIDRDKAEPWKATHVLSLGLSVQYSLLLLGLSGRGKSTMVRQICQQIPQTIEHDRYTDLHGHEIIVSRVQVTYLYIEIHDRRGQKALLLNLLESLDAVTGESYSHTHRNRSVNELISVVQKSFIGHGVGLLILDEAQNLARSAKNEVISNNEKTTMKFLEELLNRVGIPLMFVGTLATMKLFDSEMTLTRRATKNGFMQLVSCDINSSFWLRFIRLICQTRFLKNQKTSEDVLRQHIHYLSAGIPAIATSLVRATLSYLTLLKPTDQDLSIAALDLCFNREFKILQPALSALRKGDYYQFEDLSPMLLLESVGNSQVVDGDAYSAEGEILLQGEVKITKKLPKTEEKKLKTLEQLSPDSLLGQLGYSVDKGSWK
>NZ_CP023817.1|WP_098969157.1|1027960_1030144_+|transposase
MRINQKIVSKTKNQSELLIVDICLDNRLIAVSDLLADSPKRPFVISLEHVESDINAARVSIADHDFPEIFYQPDSVFDPKWIEKREQCLATIKPLIVDPDLKHRYLYGESNGILNQLIAQSGRSKKYVSSCLNRYFKCGGMPNSLLPRYYECGLNHQLPTKSLELDDGKICLASKRGRETNYGNPYRGITQQDIKNIELFSRSIRSGEEVVLSKLYLDYCMTYASVEMSPKNVGDGEISESVKISLPKEHLISPRSFKRQLMKCIDKLTFIKKRVGSINYARDHAAKPGVAKKGLRGPTYRYEIDSTIADIYIRDAYSQDELVSIGRPTIYLVVDTYSTMIVGIHVGFGSPCWHGASQALCNAMSNKIDFCREYGVDIKESEWPCQEVCRELTMDRGSENSDSNITAILQGQIGIKVANLNALHRGDMKGTVEKSFHLLQEMAIPPHAGKVMKVPKKEDQHPSRKPLYSYNEFVNRLINAILFLNNNRASINNQNFEMSRDGIGFTPRDVWNWGLKQAVIGSRVSADKLRFALLPEAEATVMSQGIYFRNLYYSCNEIVRRSYLDKAKNFGRFKIKIRYSDVTTNYIWLKDEVLGDVIQLDITDRSEAYKNQIWENVMRQQEITKKRLANLKEREFSERVALVQKFDKQDKQIQASIRKHSKSNAKSIQGGMKNRKMIDAAMQRHQEGQSIVADLVPVAQENTYPRPLSAISQQDLTDPTIFSVEEK
>NZ_CP023817.1|WP_098969164.1|1044137_1044806_+|NYN-domain-containing-protein
MNTQTEFLPSVKYGKVLLIDLENCPSQINVLNETLNEYAQVVICYAQTGAKIPLDWLMPLNEIINSGRLKIFKMANAGKNSADFGISFYAGVLMQQLPADAHFVIMSNDTGLEHVVSLLRNQHRVAERIGTKKDESRLTATSGVDTLALKKICSHLLTYKNNRPANKGSLLNSINSKFKEMPSIGGSILLALEKTGVVSLQDDKVIYNEKKMLELSLLNSQI
>NZ_CP023817.1|WP_098969165.1|1046058_1046427_+|helix-turn-helix-transcriptional-regulator
MNKDTATKVFESLASGIRLDVWRLLVKAGLEGKVAGQLASELDIAPNTLSFHLKAMLHADLLSVEQEGRFLRYRANIPLMLDLIGYLTEECCAGHPEACGMMRAESSCSPHVLPEQSCCNKE
>NZ_CP023817.1|WP_098969166.1|1046431_1046803_+|arsenite-efflux-transporter-metallochaperone-ArsD
MSVIQIFDPALCCASGVCGTEVEQRLVNFAADVAWAKGQGVAIERFNLAQQPMVFAETPAVSAFLMHAGEAGLPLVLVDGQVVLTGRYPDRSELARYAGLPAPQAAIKGIAKSGGCCGSSGCC
>NZ_CP023817.1|WP_098969167.1|1046877_1048710_+|arsenical-pump-driving-ATPase
MSSSLSNALLSYSFVTDAPPFLFFTGKGGVGKTSLACASAVALCDSGKRVLLVSTDPASNVGQVFDTAIGNTITAIAAVSGLSALEIDPQAAAQAYRERIVGPVRGKLPESVVRSIEEQLSGACTTEIATFDEFTALLIDRQLVEQYDHIVFDTAPTGHTIRLLQLPGAWSEFLEQGKGDASCLGPLAGLEKQRSQYAEAVAALSDGLKTRLILVARAQASTLREVARTHDELAAIGLANQQLVINGIFPQRELADDPLACAVWQREQQALAQMPALLASLPQDRIPLLATNLVGVESLRQLLGTVSADGADRADGADDSADAVERTTAEPHPGLQQLVDELASDGHGLIMLMGKGGVGKTTLAAAVAVELASRGLPVHLTTSDPAAHLGETLAGALPSLEVSRIDPHAETERYRAQVLATKGASLDAQGRALLEEDLRSPCTEEIAVFQAFSRIIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIARQMGNKGLHFTTPMMQLQDPKQTKVMIVTLPEPTPVQEAANLQADLRRAGIEPWAWVVNHLLSPASVTSPLLAQRACCQQPHIAAVKERHTKRYAVVPLQAVEPVGVAALQGLCHPIYQEA
>NZ_CP023817.1|WP_172953958.1|1048806_1049877_+|ACR3-family-arsenite-efflux-transporter
MSTNDCCDLPVSKKMSFLDRNLTLWIFVAMAIGVGIGYLFPQVAQWNEAMSVGTTNIPLAIGLILMMYPPLAKVNYATMGTMTRDRQAITLSLVMNWLVGPILMFVIALVFLHDHPDYMVGLILIGLARCIAMVLVWNDLGGGNKEYGAGLVALNSGFQILTYSFMAWLFITVLPPLFGLQGFAVDITMLDIAQSVLIYLGIPFLAGFLSRHYLVKAKGEQWYTERFIPAISPITLIALLATIVLMFSLKGEMIVELPMDVVRVAIPLVVYFVLMFFTSFLVGKKLGIPYDKNASIAFTSTGNNFELAIAVSIAVFGLNSDQAFAGVIGPLVEVPVLIALVNVALRMKRNYLNAEA
>NZ_CP023817.1|WP_098969168.1|1049879_1050311_+|glutaredoxin-dependent-arsenate-reductase
MNNTPITIYHNPACGTSRNTLELIRNAGVEPTVIHYLETPPSRATLVALIAAMGMPVRDLLRKNVPPFEELGLAEERFSDDELVDAMLAHPILINRPIVVTPLGTKLCRPSEVVLDILPSPQQGAFSKEDGEPVVDAQGKRIK
>NZ_CP023817.1|WP_042022277.1|1050422_1051805_-|amino-acid-permease
MDLKQDGEELKRGLKNRHIQLIALGGAIGTGLFLGIAQTIKMAGPSVLLGYAIGGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGEFAGFASGWNYWVLYVLVSMAELTAVGIYVQYWWPEIPTWMSAAVFFVLINAINLSNVKAFGEMEFWFAIIKVVAIIGMIGFGGYLLISGTGGPEASVTNLWAQGGFFPNGISGLVMAMAVIMFSFGGLELVGITAAEADNPEKSIPKATNQVIYRILIFYIGALAILMSLYPWGKVVEGGSPFVMIFHALDSNLVATVLNIVVLTAALSVYNSCVYCNSRMLFGLAKQGNGPKALLKTNKSGVPLVALSVSAIATLLCVLINYLMPGKAFGLLMALVVSALVINWAMISLAHLKFRKAKVAEGVQPKFKAFWYPFGNYLCLAFMAGILVIMYMTPDFRISVELIPAWLVVLGIGFVIKRKGQAQSKVAANLG
>NZ_CP023817.1|WP_098972461.1|1052152_1052488_+|hypothetical-protein
MPNKRECREECGELEHRESESVLQQGVARGLLVALWLAIAASPLLLLVVATMLLGWLLLGDQGLLHYWQPLLLVGGVTGAVAGGWLAERVRLRHGLLAFYARLMNNPELNR
>NZ_CP023817.1|WP_172954088.1|1052715_1053564_-|kinase/pyrophosphorylase
MRPHPPVSQEPHVHTVFYVSDGTAITAEVFGHAVLSQFPLAFEQITIPFVETQEKARQVRMRIDEQFRQTGVRPILFHTIVDPLVREEVLKSEACGHDFLNTFVSPLEQELGVKAEPRLHRTHGMENRKLYDDRIEAVNFALANDDGITTREYDEADIILIGVSRCGKTPTSLYLALQFGIRAANYPFIEQDMGMLELPAPLKANRHKLFGLTIAPQRLHEIRNQRRANSRYSSIEQCEQELACVERLFRQEAIRFLDTSSHSVEEISAKVLEATGLRRQLC
>NZ_CP023817.1|WP_098969169.1|1053876_1056249_+|phosphoenolpyruvate-synthase
MQQYVLWYEQLGMQDVERVGGKNASLGEMISNLSGAGVSVPGGFATTAFAFNEFLESSGLNGKIHHLLDNLDVDDIAALNRAGQQIRDWVIEAPFQPELEQAIRVAYEKLSAGVEASFAVRSSATAEDMPDASFAGQQETFLNVRGIDAVMTAVKHVFASLFNDRAISYRVHQGYDHKGVALSAGVQRMVRSDLAASGVMFTLDTESGFNDVVFITGSQGLGEMVVQGAVNPDEFYVHKPTLRGGRPAVVRKTLGSKLIKMTYSDDAGHGRQVKIVDTDEAERSRFCITDEEVMALAKQALIIEQHYGRPMDIEWAKDGQDGQLYIVQARPETVRSRQEANTLERFALKQAGKVLIEGRAIGHKIGAGPARVISSISQMDEVQPGDVLVTDMTDPDWEPIMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATDHIQPGQRITVSCAEGDTGFIYDGELDFDVAVTEVGNMPRLPIKIMMNVGNPDRAFDFAQLPNAGVGLARLEFIINRMIGVHPKALLEFDQQTPELRATIAKMIAGYDSPREYYVAKLTEGIATLGAAFWPERVIVRMSDFKSNEYANLVGGRGYEPHEENPMIGFRGASRYIADSFRPCFALECEAIKRVRDVMGLTNVEVMIPFVRTVGEAEQVIDILAENGLRRGERGLKVIMMCEIPSNALLADKFLEHVDGFSIGSNDMTQLALGLDRDSGLIAHLFDERDEAVKALLSMAIQAARKAGKYVGICGQGPSDHPDFAAWLVEQGIDSLSLNPDTVVDTWLYLAEQHGRK

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Crispr_ID: NZ_CP023817_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_4

2131985-2132075

Orphan

Consensus_repeat	Method
ATTGCACCGCGGTAACCATCCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023817_4

>merge|NZ_CP023817|4|2131985-2132075|CRISPRCasFinder
ATTGCACCGCGGTAACCATCCCCTCTCCCCTTACGGGAGAGCGGTAGGGTGCAATAAGCGGAGCGTATTGCACCGCGGTAACCACCCCTCC

>NZ_CP023817|4|3|2131985-2132075|CRISPRCasFinder
ATTGCACCGCGGTAACCATCCCCTC	TCCCCTTACGGGAGAGCGGTAGGGTGCAATAAGCGGAGCGT
ATTGCACCGCGGTAACCACCCCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_098969722.1\|2130165_2131521_-\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP023817.1\|WP_098969726.1\|2141479_2142835_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP023817.1\|WP_005346763.1\|2121627_2121867_-\|FeoC-like-transcriptional-regulator	unknown	unknown	gnl\|CDD\|370243
NZ_CP023817.1\|WP_005350930.1\|2141164_2141413_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP023817.1\|WP_098969728.1\|2143775_2144762_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP023817.1\|WP_098969725.1\|2138852_2139704_+\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
NZ_CP023817.1\|WP_042018947.1\|2139700_2140432_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP023817.1\|WP_098969724.1\|2136717_2138094_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP023817.1\|WP_098969718.1\|2126731_2127736_+\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
NZ_CP023817.1\|WP_068979415.1\|2125066_2125624_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP023817.1\|WP_098969720.1\|2128345_2129092_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP023817.1\|WP_042018967.1\|2121863_2124134_-\|Fe(2+)-transporter-permease-subunit-FeoB	unknown	unknown	gnl\|CDD\|236563
NZ_CP023817.1\|WP_098969727.1\|2142878_2143553_-\|transcriptional-regulator-TctD	unknown	unknown	gnl\|CDD\|185376
NZ_CP023817.1\|WP_042018948.1\|2138365_2138863_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP023817.1\|WP_098969723.1\|2132251_2132560_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_082186713.1\|2140730_2140907_+\|DUF3606-domain-containing-protein	unknown	unknown	gnl\|CDD\|371985
NZ_CP023817.1\|WP_098969717.1\|2124477_2124807_+\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_CP023817.1\|WP_098969721.1\|2129224_2130034_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP023817.1\|WP_042018966.1\|2124130_2124358_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP023817.1\|WP_098969719.1\|2127732_2128251_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098969722.1\|2130165_2131521_-\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP023817.1\|WP_098969726.1\|2141479_2142835_-\|sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	8.17921e-49
NZ_CP023817.1\|WP_005346763.1\|2121627_2121867_-\|FeoC-like-transcriptional-regulator	gnl\|CDD\|370243	pfam09012, FeoC, FeoC like transcriptional regulator. This family contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependant transcriptional repressor.	2.00209e-22
NZ_CP023817.1\|WP_005350930.1\|2141164_2141413_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	6.59308e-23
NZ_CP023817.1\|WP_098969728.1\|2143775_2144762_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	4.25284e-107
NZ_CP023817.1\|WP_098969725.1\|2138852_2139704_+\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	4.39715e-44
NZ_CP023817.1\|WP_042018947.1\|2139700_2140432_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.5858e-139
NZ_CP023817.1\|WP_098969724.1\|2136717_2138094_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP023817.1\|WP_098969718.1\|2126731_2127736_+\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	3.78972e-32
NZ_CP023817.1\|WP_068979415.1\|2125066_2125624_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	6.58289e-52
NZ_CP023817.1\|WP_098969720.1\|2128345_2129092_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.50339e-21
NZ_CP023817.1\|WP_042018967.1\|2121863_2124134_-\|Fe(2+)-transporter-permease-subunit-FeoB	gnl\|CDD\|236563	PRK09554, feoB, Fe(2+) transporter permease subunit FeoB.	0
NZ_CP023817.1\|WP_098969727.1\|2142878_2143553_-\|transcriptional-regulator-TctD	gnl\|CDD\|185376	PRK15479, PRK15479, transcriptional regulator TctD.	1.78498e-111
NZ_CP023817.1\|WP_042018948.1\|2138365_2138863_+\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.32468e-88
NZ_CP023817.1\|WP_082186713.1\|2140730_2140907_+\|DUF3606-domain-containing-protein	gnl\|CDD\|371985	pfam12244, DUF3606, Protein of unknown function (DUF3606). This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.	1.31102e-14
NZ_CP023817.1\|WP_098969717.1\|2124477_2124807_+\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	8.62863e-39
NZ_CP023817.1\|WP_098969721.1\|2129224_2130034_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.51437e-27
NZ_CP023817.1\|WP_042018966.1\|2124130_2124358_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	1.42825e-19
NZ_CP023817.1\|WP_098969719.1\|2127732_2128251_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	1.15754e-34

>NZ_CP023817.1|WP_098969722.1|2130165_2131521_-|8-oxoguanine-deaminase
MSATRIWIKNPLATFTPEAVDGRGGLVIENGLISEVLAAGQQPARPCDQLFDARDHVVLPGLINTHHHFYQTLTRAWGPVVNQPLFPWLKTLYPVWARLTPDALALASKVAMAELLLSGCTTAADHHYLFPRGMEESIDIQVEAVRELGMRAMLTRGSMSLGEDEGGLPPRHTVQGQQQILDDSLRLVRQYHQRGAGAQIQIALAPCSPFSVTEEIMVESAKLAAELDVRLHTHLAETLDEEAFCLERFGLRTVDYLEKVGWLGDRTWLAHGIHFNPDEIVRLGAAGTGVCHCPVSNMRLASGICPTLDLEAAGAPVGLGVDGSASNDASNMMQEARQALYLQRLRYGAERITPRKVLEWATRGSAKLLGRGDLGELLPGKQADLALFKLDDLRFSGSHDPIAALILCGAERADRVMVGGKWRVVDGAIEGLDIEGLIARHKVAAAALVRG
>NZ_CP023817.1|WP_098969721.1|2129224_2130034_+|transporter-substrate-binding-domain-containing-protein
MKTWIGLAGALLATLAQASPELGKLHYLTEEYKPYNYADASGTPTGFAVELLQLVWQKTSTPPQPVTIMPWARGYYLLTQKPNAVLFSTARTQARDPLFKWACPIGYAEIVLVGLAERNIAITKLDDAKAFNIGAVRADVGEQLLLNNGFDETKLMAANRLAQALKMLTSGRVDLVSTNKTTMEQLIIEQKLDPARFKEQWVLSSEQFCFAFSHPVSDELVKEFQTGLTQVLASGEYPLLHSKYFPAPAPAPANTSPAKSEASSTAPAN
>NZ_CP023817.1|WP_098969720.1|2128345_2129092_+|transporter-substrate-binding-domain-containing-protein
MRIWLICHLVLLCWASTARADLGKLEYLTEEYPPYNFSDPQGQPTGLAVELLQMIWQNSGVVPQPVRILPWARGYYLLTQKPNVVLFSTARTQAREDLFKWVCPIGYSEYILLGRKVQNIKLSAFEQMSQYKISAVRADAAEQLLLNNGMDDNNIIPANRLSQGLKMLLSGRADLLATSKLAGYDAIRELKLNSDDFNVAMVLSAEQLCYAFSRQMPDSEITLFQQALTRALASEAYRKLQAKYLPVR
>NZ_CP023817.1|WP_098969719.1|2127732_2128251_+|GDYXXLXY-domain-containing-protein
MKPATRQLALLLSGLAIVAGINATVWRYERAMSSGEVVLLRLAPVDPRSLMQGDYMRLNYEIARELASRDARATQDNGSDTLVIRLDAHQVASLVAEGKPDQLASNERLLQVHQSERQWQIGPDAYFFEEGTGAQYEAARYGEFRLQANGKTLLVGLRDEAYQPIGTPRARW
>NZ_CP023817.1|WP_098969718.1|2126731_2127736_+|DUF4401-domain-containing-protein
MSDLTLWQALQQANLVDGEMPRDTQPHWSSRFMLGLVGWIAALFLLFFLFLTFEHLTREANSALLLGAVLLAGAYALNRSQRGDLWDQFVLALTLAADAWLLYGLLDQLDLHHALLWFGLCLLSLAIAVLFDHWLVRLFHSVAAALLLTLGLACLGLQLLALPLVMAAITFCWLRADRDPQRHQLYHSITLGLALSLLVLGRLHHPLWDGGSSVLDELGLSRLPLWLNPLLCAALLLAVMVKLKLPLLFGLPLVLLSAIIPGMGAGALVLILGFYAGSLGLMTLSALLLLGYGSLYYYDLGLTLMTKSWLLLGSGILLLGARQLLNTFAARSDS
>NZ_CP023817.1|WP_068979415.1|2125066_2125624_+|TMEM165/GDT1-family-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMFAATLLNHAGAAWIGEFISRWLDPKIMVYLVAVAFIAMAIWILVPDKMDDEESSLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLVQVITGTTLGMMLANVPVVLIGKLGADKLPLKGIRIACAILFVGLGVSTLIFA
>NZ_CP023817.1|WP_098969717.1|2124477_2124807_+|stress-response-translation-initiation-inhibitor-YciH
MSHDNNSRLVYSTDGGMIKEQSAPQSASPFPADGTVRIRRETKGRKGAGVITIHGVPADQQKAMATLLKKKCGTGGGLKEGIIEIQGDKRDLIKAELEKAGFSVKLVGG
>NZ_CP023817.1|WP_042018966.1|2124130_2124358_-|ferrous-iron-transport-protein-A
MVLTQLSPGQSARIKNMNQLSRPLRRKLMVMGLLPQTEVIYLRSAPLGDPLQIQCQGICLSMQKSLAEQIEVEPV
>NZ_CP023817.1|WP_042018967.1|2121863_2124134_-|Fe(2+)-transporter-permease-subunit-FeoB
MNYSLVTVGNPNSGKTSLFNALTGARQQVGNWSGVTVDKKMGEFSAGEHHFKLMDLPGIYSLASQDGSLDEQIASRFAQSQQPDLLLNVIDAANLERSLYLTLQLRELGLPMVVVLNKLDILHKRRIVIDEEMLGKSLGCPVVALSAHNSKQVAAFKQQIQQFIGQPQAALQLDYGHDLEKDLAELETLLAPHHLTSRGRALRLLEEDAVMQETLLPGQHAAASNVVTRAHQGQDIDLQLADIRYGHIHLWASQASQQKGKLTVAQSEWLDRLLLNRWIGIPFFLFVMYLMFMFAIKVGSAFIDFFDIMGGALFVDGVHHLLGLINAPEWLGAIVADGFGVGLQTVATFIPVIGCLYLFLAVLESSGYLARAAFVVDALMRRLGLPGKAFVPMLMGFGCTVPSVMATRTLNSERERLMTSAMAPFMSCGARLPVYALFAVAFFPESGQNLVFGLYLIGIVVAVLTGLLLRSTLLPGKSDSMLMEMPDYEWPRPVNVGIKTWQKLKSFVFGAGKTIVLVVAVLSVLNSLGTDGSFGHQDQESSVLSKVSQMVTPVLHPIGVRDDNWQATVGIVTGIFAKEAVVGTLNSLYAGKSGDEEASEFSLVASFHEAIEAVATNLAEINPSDPMGLAVGELDDQQAAADAQEVDVSTYGNMQTHFDGAAGAFAYLLFVLLYMPCAAAMGALVRETGRQWALFTAAWCNYMAFMCATVFYQVATFAAHPEQSLFWIVSYGLSLVLLWWAGRRHGDIVARKVVTL
>NZ_CP023817.1|WP_005346763.1|2121627_2121867_-|FeoC-like-transcriptional-regulator
MILRELGDYLAAQQKVSRRDLARHFHTSEDAVEAMLGVWMRKGRVIKRESRVCGGSCCGKSEEVMFEWCDAGQIGFKIR
>NZ_CP023817.1|WP_098969723.1|2132251_2132560_-|hypothetical-protein
MANRLVDSKNSITRAGRWLAARGAALFAELSEFQQRIWVVSIVNDTYTDTFIVNEGSFEEPMQWMRRKQYNADMLQRVDAMQRSQVIQFELGDIRHRLMRVK
>NZ_CP023817.1|WP_098969724.1|2136717_2138094_-|cysteine--tRNA-ligase
MLKIYNTLTRQKEQFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVSFDVVARYLRYSGYQLNYVRNITDVDDKIIKRAAETRVTCDDLTERLIGDMHADFDALGMVRPDIEPRATQHIEEIIELVESLLAKDHAYVADNGDVMFIVESYADYGKLSGQDLEQLQAGARVDVVDAKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHYDAETVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFKEAMDDDFNTPEAYSALFDLVREINRQKAEDITVAAGLGARLRELGAVLGILQQDPDAFLKGDEADDEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLEDSAGKTSWRRA
>NZ_CP023817.1|WP_042018948.1|2138365_2138863_+|peptidylprolyl-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFDEKDTRPSIKNEAANGLSNKVGTIAMARTSEPHSASAQFFINVNNNDFLDFKSATTQGFGYCVFGEVTAGMDVVNKIKGVKTGNYGRMHQDVPSEDVVITKVTLAD
>NZ_CP023817.1|WP_098969725.1|2138852_2139704_+|DUF4269-domain-containing-protein
MLTDLCQLGTDETAAPAAVFPSASPTASPNWRRLDYLAHGNPRQRSAHALLTAGLWDELAAHCTDMALVSTLAIGLDRPGSDLDILCQHPDPAAFAASLAALPNSLHLNAALLTKERWQASDKGDNVWLLERTFPSCDKCAADQNGASWPVELYVTPAPIETQHGWRHLTLMAALLQRFGEPFYREVRRLRLDEGLKGEAAMCTLLGLAGDPYQTLLTLEGKDLATVIWQTNPACSLPVARQASAPVSPPVAQLDPAARPRTAPYFATGCPQPTTTENPNPLS
>NZ_CP023817.1|WP_042018947.1|2139700_2140432_+|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCAQRPDMTAALVRFLEHDAVGADALYVLGDLFEFWIGDDDPNALHHQVAAALLALSQQNVPIYFIHGNRDFMLGQQFAKQAGMTLLGDPCIIDLYGERVLLSHGDLLCTRDEGYQKYRRITQLKWLRWLFLRLPLTRRQAIAHKIRGQSRMEKTVKRQTIMDVTPAAVDEMLRAHHCRVMIHGHTHRPAIHDFTLDGQPARRIVLGDWFEQGSVLVCHPGEQHLEVRALPEG
>NZ_CP023817.1|WP_082186713.1|2140730_2140907_+|DUF3606-domain-containing-protein
MPDTNAIAHPLDAKKLNINDPYEMKLWIKTFECTEVQLKRAVKAVGTTGKAIRKHLKK
>NZ_CP023817.1|WP_005350930.1|2141164_2141413_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFISWIVLGLLVGILAKWIMPGRDGGGFFMTALLGIVGAMVGGYVGTLLGLGSVTGFNIPSIALATVGALIVLFVFNKIRS
>NZ_CP023817.1|WP_098969726.1|2141479_2142835_-|sensor-histidine-kinase
MLILWAASAWYSYYGALAAATSAYDRTLLASARTVAERLTAAEGSLKVDVPYVVLDSFERNMRDRLFYQVRGIDDRVISGFDDLPPVPVDTPLTDRYPALAYFYDGLYQEAPIRAVMLLQPVGEGGVNGMARITVAETLLGRQQLAEQLLWSALLTEGALVVLTLLLAYLLLKGLLTPMRRLSREILRRDAANLAPLPDLLPWQETRPLVQAFNRQLARLRQLVARQERFSADAAHQLRTPLTILKTQVEVARSSGDPALMSESLDAMAVRLDHTIALTERLLLLARLKSDECSGLRQRELTPLVALVQQACLSRLAQARSKGIDLGFEGEESVVMVAGEPLLLGELCANLLDNAIKYTPPHGTVTARVVRGHKQIWLEVEDSGPGIAPELAERVWQPFQRLEQGSEQPGAGLGLALVRDIANYHHGEVVLLPATQLGGLLVRLILPLAKS
>NZ_CP023817.1|WP_098969727.1|2142878_2143553_-|transcriptional-regulator-TctD
MRLLLAEDNHELAHWLSRALTTAGFAVDWVADGAQADHLLRHEQYALAVLDIEMPKLDGLAVLGRLRSRGQGLPVLLLTARGAVEERICGLNAGADDYLAKPFDLGELDARLRALLRRSESGGAELRLGQLTLHPDGYFLLADARLALTPREQALLTALMYRHGRPVAKGQLFEQVFNLDDEAGLDSIDLYIHRLRKKLVGSGVVITTLRGLGYLLEAASEASH
>NZ_CP023817.1|WP_098969728.1|2143775_2144762_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKQRTRHALALLTLLGTLPLQAAESAATPNRTECIAPAKPGGGFDLTCKLLQVSLQETGTIDKPMRVTYMPGGVGAVAYNAIVAQRPAEAGTVVAFSGGSLLNLSQGKFGRYGVDDVRWLAAVGTDYGMIAVRHDSPYQNLKELVSAMERDPNSVVIGAGASIGSQDWMKTALLAKQAGVDPHKMRYVAFEGGGEPVTALLGNHVQAVSGDLSEMVPYIGGDKLRVLAVFSAERLPGKLATIPTAKEQGYDLVWPVIRGFYVGPKVSDSEYQWWKQTFDQLVKTDTFKAQRELRGLFEFDLTGEALDSYVKEQVAQYREQAKAFGLAK

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Crispr_ID: NZ_CP023817_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_5

2941103-2941241

Orphan

Consensus_repeat	Method
CTGGTATGGCTGAAAGATTTAATGAAAGAGCTGGTGGGGCCGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023817_5

>merge|NZ_CP023817|5|2941103-2941241|CRISPRCasFinder
CTGGTATGGCTGAAAGATTTAATGAAAGAGCTGGTGGGGCCGAGGTAAGGCCACTGCGTCTGGCATACCCCATCGCCACGCGCAGCAACCGGCACTGGTATGGCTGAAAGATTTGATGAAAGAGCTGGTGGGGCCGAGG

>NZ_CP023817|5|4|2941103-2941241|CRISPRCasFinder
CTGGTATGGCTGAAAGATTTAATGAAAGAGCTGGTGGGGCCGAGG	TAAGGCCACTGCGTCTGGCATACCCCATCGCCACGCGCAGCAACCGGCA
CTGGTATGGCTGAAAGATTTGATGAAAGAGCTGGTGGGGCCGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_098970420.1\|2938941_2940039_-\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NZ_CP023817.1\|WP_098970427.1\|2945933_2946551_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_CP023817.1\|WP_098970413.1\|2935939_2936794_+\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP023817.1\|WP_098970409.1\|2933221_2934493_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240532
NZ_CP023817.1\|WP_098970399.1\|2928577_2929486_-\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224824
NZ_CP023817.1\|WP_005343372.1\|2941313_2941880_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP023817.1\|WP_042021453.1\|2943231_2944230_-\|RNA-polymerase-sigma-factor-RpoS	unknown	unknown	gnl\|CDD\|235548
NZ_CP023817.1\|WP_098970401.1\|2929684_2930149_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098970432.1\|2948930_2949623_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP023817.1\|WP_068977720.1\|2946555_2947302_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP023817.1\|WP_098970411.1\|2934720_2935485_-\|CphA-family-subclass-B2-metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|293845
NZ_CP023817.1\|WP_042021449.1\|2945355_2945937_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP023817.1\|WP_098970404.1\|2930305_2931781_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP023817.1\|WP_042021443.1\|2948340_2948817_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP023817.1\|WP_098970397.1\|2925333_2928384_-\|DUF1566-domain-containing-protein	unknown	unknown	gnl\|CDD\|376999
NZ_CP023817.1\|WP_042021451.1\|2944275_2945346_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236782
NZ_CP023817.1\|WP_172954014.1\|2942080_2943118_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_CP023817.1\|WP_098970406.1\|2931879_2933139_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP023817.1\|WP_098970429.1\|2947282_2948341_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP023817.1\|WP_098970416.1\|2936957_2938661_-\|amidase	unknown	unknown	gnl\|CDD\|180626

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098970420.1\|2938941_2940039_-\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NZ_CP023817.1\|WP_098970427.1\|2945933_2946551_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	5.60701e-110
NZ_CP023817.1\|WP_098970413.1\|2935939_2936794_+\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	1.75946e-22
NZ_CP023817.1\|WP_098970409.1\|2933221_2934493_-\|hypothetical-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.15918e-08
NZ_CP023817.1\|WP_098970399.1\|2928577_2929486_-\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	5.0539e-121
NZ_CP023817.1\|WP_005343372.1\|2941313_2941880_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.03926e-10
NZ_CP023817.1\|WP_172954014.1\|2942080_2943118_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	3.08674e-168
NZ_CP023817.1\|WP_098970432.1\|2948930_2949623_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.27439e-120
NZ_CP023817.1\|WP_068977720.1\|2946555_2947302_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	4.54356e-150
NZ_CP023817.1\|WP_098970411.1\|2934720_2935485_-\|CphA-family-subclass-B2-metallo-beta-lactamase	gnl\|CDD\|293845	cd16287, CphS_ImiS-like_MBL-B2, metallo-beta-lactamases, subclass B2; MBL-fold metallo-hydrolase domain. Includes Aeromonas hydrophyla CphA, Aeromonas veronii ImiS, and Serratia fonticola Sfh-I. MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. B2 MBLs have a narrow substrate profile relative to subclass B1 MBLs that includes carbapenems, and they are active with one zinc ion bound in the Asp-Cys-His site, binding of a second zinc ion in the modified 3H site (Asn-His-His) inhibits catalysis.	7.34791e-156
NZ_CP023817.1\|WP_042021449.1\|2945355_2945937_-\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	2.65744e-32
NZ_CP023817.1\|WP_098970404.1\|2930305_2931781_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.33174e-37
NZ_CP023817.1\|WP_042021443.1\|2948340_2948817_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	4.31198e-98
NZ_CP023817.1\|WP_098970397.1\|2925333_2928384_-\|DUF1566-domain-containing-protein	gnl\|CDD\|376999	pfam03150, CCP_MauG, Di-haem cytochrome c peroxidase. This is a family of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidisable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site). The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognized.	4.63459e-77
NZ_CP023817.1\|WP_042021451.1\|2944275_2945346_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	4.56573e-76
NZ_CP023817.1\|WP_042021453.1\|2943231_2944230_-\|RNA-polymerase-sigma-factor-RpoS	gnl\|CDD\|235548	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.	0
NZ_CP023817.1\|WP_098970406.1\|2931879_2933139_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.0142e-152
NZ_CP023817.1\|WP_098970429.1\|2947282_2948341_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	1.04653e-157
NZ_CP023817.1\|WP_098970416.1\|2936957_2938661_-\|amidase	gnl\|CDD\|180626	PRK06565, PRK06565, amidase; Validated.	0

>NZ_CP023817.1|WP_098970420.1|2938941_2940039_-|agmatine-deiminase
MSIKTIHSTPAADGFTMPAEWAHQQAVWMIWPFRPDNWREAGRFAQPTFAKVADAIGGATPVFMGVPAQFMEQARAIMPAHVTLVEMNSDDCWARDTGPTIVTNAAGECRGVDWGFNAWGGHKGGLYYPWNQDEEVAAQMLAQHGMARYDAPLILEGGSIHVDGEGTCLTSAECLLNENRNPHLSKAQIEAHLRDYLGVTSFIWLDEGVYMDETDGHIDNMCCFVRPGEVALHWTDDQNDPQYARSVAALKVLEAAVDAKGRKLKVWKLPQPGPLFCTEEESAGVESGSGVPREAEGRLAGSYVNFLITNDRIVYPLLDAATDGEAQRILEEIFPEHTVIGVPAREILLGGGNIHCITQQIPSGQ
>NZ_CP023817.1|WP_098970416.1|2936957_2938661_-|amidase
MIEVTEVSIAELRAALGSGRTTAVELVKAYLARIAAYNGPESATKLNAVVVANPDALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTVERLRAAGAICLGKTNMPPMANGGMQRGVYGRAESPYNASYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMNDLLEVLDVVVADDADTRGDLWRMQPWVKLPKASEVRPASYLELAAKPDALKGKRLGVPRMFINKDELAGTSENPGIGGPTGQRIHTRDSVIALWEEARKALEAAGAEVIEVDFPLVSNCEGDRLGAPTVFNRGIVSPEFLNDELWELSGWAFDDFLRANGDPKLNKLEDVDGPQIFPHDPGTLPNREGELAAGMDEYVKMAKRGIKRFDEIPTVPDGLRGLEKTRKLDLEEWMDGLKLDAVLFPTVADVGPADADVNPICADIAWSNGIWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNNLLRFASAFESTGSKRMVPPRTPPLG
>NZ_CP023817.1|WP_098970413.1|2935939_2936794_+|DUF4238-domain-containing-protein
MGRQAGHHYIPASYLAGFTMDNNKSAQFCVVPVDGKKTYKTSPTNVCKSRDYYSLPGLADSLSIEKFYATDIEPKIKLTLDFMENNKTIPSKEDLTGLFLLGATLWLRNPKRRNLLTENLLYIENFIDDGLSDGIKVTNRHKLMATKGNIISAELTSLKIAINSFSNKHFQLFISEPSQKFITSDNPCYISHRDMMKGIYLGLDTPENEICFPINKNMAVIARNEPCKQSTFKADEKFVSLLNTKIAGTAQRCFFTAEDSVLLLDKDMKTYEHLFKPSEGWHQK
>NZ_CP023817.1|WP_098970411.1|2934720_2935485_-|CphA-family-subclass-B2-metallo-beta-lactamase
MMKGWMKCTLAGAVVLMASFWGGSVRAAGIELKQVSGPVYVVEDNYYVKENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSSKPVLEVINTNYHTDRAGGNAYWKSIGAKVVATRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFILQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGNCILKEKLGNLSFANVKAYPQTIERLKAMKLPIKTVIGGHDSPLHGPELIDHYEELIKAVPQS
>NZ_CP023817.1|WP_098970409.1|2933221_2934493_-|hypothetical-protein
MQYASLARLKQAFITGMWASLVSIVIGFAFKVWLAQWVAKGELALFNSVVDLISLSFILMTGFRSSMVVSYSQTKNDRDIINIFRYFLIGIVLLTWGAVIPYIKHGLHIRVEYLQLVGVIFGLGLKVYFTNLVAMYRMYQLSNRVTWLEPLANGLLFMACYFGLGMDALASLFYGLTFSSLAIAGYMYVSRRRAIATKPLAKVALGPEMVSYVKKSFTASLEAGASILMIYITVLLTIRHFSIDELGDFQVVVRPIFTYMTTLFVFPIYRFVLPELAVNLRNGDHRQIRMIRRWIFRLSAIVSLAFFGLMLLAGKPLVLLFFPADYVGAVPVLFHFSIFFIFMMLNGYQLAYIKAHGHFTQSLLIRLAGIVALVAAYYLVAEFTANVVAIIVALGLGYLVMFILSTLAERQILRSLPLVLATR
>NZ_CP023817.1|WP_098970406.1|2931879_2933139_+|DEAD/DEAH-box-helicase
MSIASFAELALSPRLQQTLSELGYAAPTPIQANAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLQHPANDTARPIRALVLVPTRELVVQVAESVVRYGQGTGLTSTQVYGGVSIAAQVDALKNGVDLLIATPGRLLDHLRQGALSLDSLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSATCDDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTVDGDRKVALVEHLIKVKGWAPVLIFSRTRQGADKLAQQLGKAGINALAFHGDLSQSAREKVLLEFRAGTLQALVATDVAARGLDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVLDTRLPQQWFPGFEPDLTRFEPEPRRNSKAAQKQRARKQALAGNKGGKGGKGKR
>NZ_CP023817.1|WP_098970404.1|2930305_2931781_+|GGDEF-domain-containing-protein
MRWPPALARQFIVKVLGLALLALTGLGCVFYYTYQSLRYDMDLITAKQKNVFEVFYQRAKILEVENITSYLAYQQSLKSPNHLVRNKPNTNYLYGYDLRSKYRFADIPLQYPAANILNTFRYALSYPEVINIYTIWNDYRLIGMVADNDVLPVRLAPIKVDLMTLPAWYHYFGCASFAPGRPFCSADEAFVSDIEIDSFSMRSTIVMSFPFIHPSGRDGYQYGRLSIDIAVDEAFRDVLRPFDTVNPTRTNISFEAAEPCHRWHVCLSKPFMRTKAGEDLYLKWSYSWLDFVKLTLQGAAFKVYLIVLLLGMITWKQLYLRLRALAHTDHLTRLPRRDILSQSLLHEHDYLMILDIDNFKSINDRYGHAVGDLALMAFSRHIKGSIRKVDTAIRWGGEEFVLLFKGMEDDEMMIHSAGRLLDRPLRIPELPTPITFSAGVIRIRDYLTVTEAVHLADELLYHVKQHGKHNIACYTGKAIRLIRPLPDDAES
>NZ_CP023817.1|WP_098970401.1|2929684_2930149_+|hypothetical-protein
MTQPVPEMMTLLLEIGEQSSQVWLSQPEGPPLAIPLAFGTHAIQPGPFRHAPPTPLELERAIMVVEDELMRIAPQIPPGLQLTLRSQPSLAEVLGDNELSRDLVEQAFCQLAAMAEGDPLAASLLPRDEHFAAVLLTVREWLHHLASESVLIVE
>NZ_CP023817.1|WP_098970399.1|2928577_2929486_-|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein
MDIRTAPRAIALALMLASGIAAANEALVIQTDFGLKDGAVSAMKGVAFGVDRTLPLYDLTHEIPAYNIWEASYRLYQTLQYWPKGTVFVSVVDPGVGTDRHSVVLKTKSGHYIVTPDNGTLTLVAEHFGIDTVRQIDEKTNRLKGSEKSYTFHGRDVYAYTGARLASGAISYEQVGPKLPAEVVKIPYQPAVAEKDGTLKGTIPILDVQYGNVWTNIDDTQLTKAGINKGDNACIKISEGSAVKYDGKAPYVSSFGDVPEGQPLVYLNSLLQVSVALNMDSFAAKHQVQSGANWHISLKKCS
>NZ_CP023817.1|WP_098970397.1|2925333_2928384_-|DUF1566-domain-containing-protein
MKTSLLLLSLLALTACNDNHSNTSMTPSPEVTPPVVKPTEPPVTPPIVPPTVQPETHTRVPLTIEIKVADRLGVGVQLEVKQVATGIRVQQAIEPGQPVSITLPAGLQLDQPLELLGSDEGYLLRAVSVRVADLSAGITLARRNSVPRLGLNEEETALFLLADQSGDGSLSQAEWGRAEEIRVQQQAAIEDYAAFLLAQRQPGAVLDYADSWQMLLALRDDKQARSWYQRSNSAQIQSARSQLYPANPSQPDEPETADLLRLDEQGQLVARGPWQCLHDVRTVSGVKGSQYWLYGSGTTALPAATRPQLAAGPTGCSRSDWRLPTLTEFERLLSSDKSAWRYPNTFAVALPAQIWLQDGAGQPRLYQLATRTWLDEGEGSLLWYALAPYPVRPSVVRDSSKPDMAALRAQYSGASAQWPAARVDEGVEWQELGPLPAVPFPADNPYSRAKVVLGQQLFFDKQLSKGRDISCASCHDPQKGWSDGLSVSVGHLGQKGNRNAPSILNSAFSSTQFWDGRVATLEEQSLHPIQNPIEMALSHDELLARLQASPDYQAAFAIAFGDQGITLERIAKAIATFERTIISRDSDFERFVKGDSQALSDKALWGMHLYRTDGRCMNCHSGPLLSQHGFESVGLTYYGRGKQEDRGRFLQTRNKADVGRFKTPSLRDVAFTGPYMHNGIFPILAQRIGGSVQGVVAMYNFGVTKWSSGVGFPTGADQYDPFFPKASDHLHALGLSNDELDAIGEFLRSASAEPRRIPATVADLGVSEADDPTPVGAVITGLAVLPAQPQLEVGRTLPLQLQWQLSDGSLSSLDAPVVWRSEQPEFATVSPEGEVRGMAVGTARLVATTARHALTVTVQVVDAQPDFARGCRQPELVAGKLAFVCQLTQGEAQRMGIAYDGVSSDSDGDYNPFPLEYVTMSQTRARDYCQQLVARGHDDWRLPTRAELEALFAAYNKDGATEQLLQQQGWPLYNRYWSSDATANDDGELPLLDLSTGDLLWDLADEAYAATCVRAI
>NZ_CP023817.1|WP_005343372.1|2941313_2941880_-|TetR/AcrR-family-transcriptional-regulator
MRIAEFDRDEVLRNAMEAFRAKGYAKTTMQELVAATGLHPGSIYGAFGNKRGLLLAAVDHYVEGKRTLRRSLLDNPSPLAGLAAYLDRIVGEALCGSCLVTRTMMELSEQDEELTQRVKGIYGELEQDLAELLTQAQAKGELAPDSNIRTLTALLLINLQGLVTFAQCRPDRPLLDDVVAQLMRALRA
>NZ_CP023817.1|WP_172954014.1|2942080_2943118_+|alkene-reductase
MNTLFQPYRLNDTLTLANRFMMAPLTRCMAGPGLVPTEQMAAYYGRRADIGLIISEAVIIRPDAQGYPNTPGLFTQAQIDGWKKVTSAVHAKGGKIFAQLWHVGRLSHPFFHQGEVLAPSAVAHEGTMPRMRELTYLVPRALTEADIAQLVEDYATAGANAIEAGFDGVEIHGANGYLIDQFLHHSTNLRTDNYGGSPEKMSRFALEVVDAISARIGGDRVGIRLSPGAYVHLEGSPEDRAVFDHLLGKLNDRPLAYIHLGIFDDNLTFDYLGGRASDYLRANYKGNLVGVGNYDAERAAVAIEANRFDLVAIGRPLIANPDYLTKVKNGEALVPYADTMLAELV
>NZ_CP023817.1|WP_042021453.1|2943231_2944230_-|RNA-polymerase-sigma-factor-RpoS
MSQEQLVMQDAELEFDAESHSHEDDDEVEAEGLQEVTAEAEETISDELLAPELNKVMDATQLYLGEIGFSPLLTAEEEVYYARRALRGDKAARKRMIESNLRLVVKIARRYNNRGLVLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELSHRLDHEPTAEDIAFALDRSVADVNRMLKLNEKITSVDTPIGGDRDKALLDVISDERGMGPELESQDDDMRASIVHWLEELNPKQREVLARRFGLLGYEPATLEDVGAEIGLTRERVRQIQVEGLRRLREILLSQGLSIEALFRT
>NZ_CP023817.1|WP_042021451.1|2944275_2945346_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MRSPIWQGSCVVVLSWLLLACASSKTAAPVDGVGDDQFVSTIPARQGGVQGGAPIQGGGYVVKKGDTLYSIAFNSGSDVPSLASLNNISPPYNIYPGQRLRFDSSSSVTTASRSASTYEVRRGDTLSSIGRQFGMAPQTLAQSNNLSAPYALQPGQVLNVQSAGGGSTQMVAATRPVTVTPVAVSQQSSGPRPLAEPSGSGQTTPFISQKSVAPAAPKEYAQVKEQKTSSSQSKLVWHWPAKGRIVEGFSVAEQGNKGIDIAGQKGQPVYAASSGKVVYAGSALRGYGKLIILKHDDDYLSAYAHNDELRVKEGDSVKGGSVIANMGSTDAPDVRLHFEIRYRGKSINPMSYLPKR
>NZ_CP023817.1|WP_042021449.1|2945355_2945937_-|DedA-family-protein
MKLFSRLYVLVMQWARHKYAPWYLSITAFIESVFWPIPVDVMLAPMALAKPHKAWHYAGLATTFSVLGALFGYALGYALWDPVVEPLVASVGYQSKIEIARHWFEQWGIWVIFIASFTPIPYKVFTVTAGLLQMALLPFIITSLIGRGMRFFLVAGLMRWGGEKMERKLMHYVDVLGWLCIGLAVVAYFWFSR
>NZ_CP023817.1|WP_098970427.1|2945933_2946551_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MIVQRLLNQLIAQDIRDFRVLATIAKVPRQLFVDEAMAHKAWDNTALPIGHGQTISQPYMVARMTELLMQNNPAHVLEIGTGSGYQTAILAHLVEHVYTVERIKSLQFLARRRLRQLDLHNVSAKHGNGWLGWSNKGPYDAILVTAAASEIPTALTDQLAEGGRLVLPVGDSQQTLQLIERSGSQLTSRILEPVRFVPLIDGDVE
>NZ_CP023817.1|WP_068977720.1|2946555_2947302_-|5'/3'-nucleotidase-SurE
MRILVSNDDGVHAEGIGALSEALRACGEVIVVAPDRNRSGASHSLTLEVPLRVTRINESGYYAVKGTPTDCVHLAVNELVRPEPDMVVAGINHGANLGDDVIYSGTVAAATEGRHLGYPSIAISLVGKTHFATAAHYAALLVKGLMKHPLPADQILNVNVPDLPLAQIKGIKTTRLGNRHRAESVIRTEDPRGQPIYWIGPPGSQQDAGEGTDFAAIEQGYVSITPLTIDMTAYDSLAGLGAWLDLQG
>NZ_CP023817.1|WP_098970429.1|2947282_2948341_-|tRNA-pseudouridine(13)-synthase-TruD
MLEQLAYLHGAPTARGILKAEAADFVVNEDLGFEPCGEGEHIFVRVRKTGENTAWVAGLLADAAGVNRNAVSWAGLKDRHAVTEQWFGIHLPGKAEPDLSVIESASIQILQAKRHNKKLRVGYLKGNHFTLRLTGVSQAEALEDRLQAIATEGVPNYYGEQRFGRDGNNLEAAKAMFAGKRIKDRNKRSLYLSAARSMLFNAIVSARIEQGLAHQLLAGDCVMLKGSHSIFSEEGVTPELAARLASGDVQLTAPQWGRGRLASQGAAAEFEQGVLAPYAEWCDGLEKAGLDQDRRPLLLKPEQMSWQLDGEALTLSFFLPAGAFATSVVRELMLAEEADHGFRNQTDANSGQ
>NZ_CP023817.1|WP_042021443.1|2948340_2948817_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MMRIGHGFDVHKFGGEGPCMLGGVPVPYEQGLIAHSDGDVVLHAVSDALLGAIGAGDIGRHFPDTAAEFKGIDSRILLRDVFARVQQAGYAIGNLDVTIIAQAPKMAPHIDAMCAVLAADLQCDLNRVNVKATTTEQLGFTGRKEGIATEAVVLLVKQ
>NZ_CP023817.1|WP_098970432.1|2948930_2949623_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MTDASRVFGLTAIVPAAGIGSRMGADCPKQYLQLAGKTILEHTLARLLAHPAIAQVIVALAPHDRWFEALPVATDPRIVRVEGGAERAFSVLNGLHVAQGEWVLVHDAARPCLTHGDLDALIAAAMDCGGAILGSRVRDTMKRSDGEGNIIATVEREQLWHALTPQMFPTRTLQRALEEGLLLGATITDEASAMERAGFTVRMVEGRADNIKVTRPEDLSLAGLFLSQQA

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Crispr_ID: NZ_CP023817_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_6

3004628-3005034

Orphan

Consensus_repeat	Method
CAAAAATAGCGGTCTATCTGTGCATAGCTCACGCCTGACCAAATGAAAAACCATGTG	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP023817_6

>merge|NZ_CP023817|6|3004628-3005034|PILER-CR
AAAAATAGCGGCCTATCATAGCTCACGCCTGACCAAATGAAAAACCGTGCTGACAATTGATCCCGCATGAAACCGTCTGTCAGCAAAAATAGCGGTCTACCTGTGCATAGCTCACGCTTGACCAAATGAAAAACCATGTGGTGACTTCACCCCATTTGAATCAAACCGGCCCCAAAAATAGCGGTCTATCTGCGCATAGCTCACGCCTGACCAAATGAAAAACCATGTGGTGACTTCACCTCATTTGAATCAAACCGGCCCCAAAAATAGCGGTCTATCTGTGCATAGCTCACGCCTGACCAAATGAAAAACCGTGCTGACAATTGATCCCGCATGAAACCGTCTGTCAGCAAAAATAGCGGTCTACCTGTGCATAGCTCACGCCTGACCAAATGAAAAACCATGTG

>NZ_CP023817|6|2|3004628-3005034|PILER-CR
AAAAATAGCGGCCTATCATAGCTCACGCCTGACCAAATGAAAAACCGTGCTGACAAT	TGATCCCGCATGAAACCGTCTGTCAGCAAAAATAGC
GGTCTACCTGTGCATAGCTCACGCTTGACCAAATGAAAAACCATGTGGTGACTTCAC	CCCATTTGAATCAAACCGGCCCCAAAAATAGC
GGTCTATCTGCGCATAGCTCACGCCTGACCAAATGAAAAACCATGTGGTGACTTCAC	CTCATTTGAATCAAACCGGCCCCAAAAATAGC
GGTCTATCTGTGCATAGCTCACGCCTGACCAAATGAAAAACCGTGCTGACAATTGAT	CCCGCATGAAACCGTCTGTCAGCAAAAATAGCGGTC
TACCTGTGCATAGCTCACGCCTGACCAAATGAAAAACCATGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_172954017.1\|3005125_3006034_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP023817.1\|WP_098970489.1\|2997777_2998197_+\|methylamine-utilization-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_042023554.1\|3006145_3006595_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP023817.1\|WP_098970491.1\|2998201_2998729_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP023817.1\|WP_098970492.1\|2998811_3000191_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP023817.1\|WP_098970494.1\|3002606_3003116_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP023817.1\|WP_098970493.1\|3000710_3001568_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP023817.1\|WP_098970495.1\|3003127_3004603_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP023817.1\|WP_042023540.1\|3014399_3015281_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP023817.1\|WP_098970485.1\|2995836_2996754_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP023817.1\|WP_098970487.1\|2996750_2997524_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP023817.1\|WP_098970499.1\|3007454_3007982_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NZ_CP023817.1\|WP_098970501.1\|3008157_3010605_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP023817.1\|WP_098970509.1\|3013840_3014242_-\|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|182471
NZ_CP023817.1\|WP_042063121.1\|3000335_3000686_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP023817.1\|WP_068977679.1\|3001815_3002610_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP023817.1\|WP_098970505.1\|3013053_3013455_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319940
NZ_CP023817.1\|WP_098970507.1\|3013532_3013853_-\|ligand-binding-protein-SH3	unknown	unknown	gnl\|CDD\|182618
NZ_CP023817.1\|WP_098970497.1\|3006732_3007458_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP023817.1\|WP_098970503.1\|3010678_3012994_+\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_172954017.1\|3005125_3006034_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	9.38404e-157
NZ_CP023817.1\|WP_098970494.1\|3002606_3003116_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	1.41799e-66
NZ_CP023817.1\|WP_098970491.1\|2998201_2998729_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.94114e-18
NZ_CP023817.1\|WP_098970492.1\|2998811_3000191_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	2.29721e-166
NZ_CP023817.1\|WP_042023554.1\|3006145_3006595_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	1.68102e-76
NZ_CP023817.1\|WP_098970493.1\|3000710_3001568_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	5.37274e-165
NZ_CP023817.1\|WP_098970495.1\|3003127_3004603_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
NZ_CP023817.1\|WP_042023540.1\|3014399_3015281_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.74862e-36
NZ_CP023817.1\|WP_098970485.1\|2995836_2996754_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.28193e-101
NZ_CP023817.1\|WP_098970487.1\|2996750_2997524_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	1.98831e-171
NZ_CP023817.1\|WP_098970499.1\|3007454_3007982_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	5.39718e-29
NZ_CP023817.1\|WP_098970501.1\|3008157_3010605_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP023817.1\|WP_098970509.1\|3013840_3014242_-\|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	gnl\|CDD\|182471	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ.	1.5723e-20
NZ_CP023817.1\|WP_042063121.1\|3000335_3000686_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.22989e-14
NZ_CP023817.1\|WP_068977679.1\|3001815_3002610_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	2.49009e-162
NZ_CP023817.1\|WP_098970505.1\|3013053_3013455_+\|VOC-family-protein	gnl\|CDD\|319940	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins. uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.40951e-68
NZ_CP023817.1\|WP_098970507.1\|3013532_3013853_-\|ligand-binding-protein-SH3	gnl\|CDD\|182618	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI.	1.01861e-16
NZ_CP023817.1\|WP_098970497.1\|3006732_3007458_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.37174e-130
NZ_CP023817.1\|WP_098970503.1\|3010678_3012994_+\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0

>NZ_CP023817.1|WP_098970495.1|3003127_3004603_-|polynucleotide-adenylyltransferase-PcnB
MKRCTIFSQIANFCRKVLGKEDGEQPAESPVPARVAGQRRTLSRDQHPVSRKEISENALKVLYRLNKGGYEAYLVGGGVRDILLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHMSVQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIAELASLLQDIPPARLFEETLKLFLAGDGLATYKLLREYGLFQPLFPQVATLFTPHGNSPYEQFIEHALADTDARVREDKRVNPAFLYATLLWGCVEARGRVLENESGLPWYDAFMLAINEVLDNQVRIIAVPRRFTTDVRDIWALQQRLTRRQGRHPERAMEHPKFRAAFDFLLLRNRVERGLGELASWWERYVASNSDVRPQLQREATRRPASGERAPAAEPRSADGEKRSSNSRNRRRPRRRKPKVAE
>NZ_CP023817.1|WP_098970494.1|3002606_3003116_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTEVFIAIGSNLSDPLGQARRAVAALVRLPESALVQASSFYSSRPMGPADQPDYVNAVVRLNTRLAPLALLDQLQKIELEQGRVRKDERWGPRTLDLDLLLYGDQVINHERLIVPHYGMKEREFVLLPLAEIAPALVLPCGTPLARLVARCPHNDLAIIAPSADLQEPL
>NZ_CP023817.1|WP_068977679.1|3001815_3002610_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSKITTASLLKMKQEGQKFTAITAYDATFAKLFDDEGAHVLLIGDSLGMVLQGGQDTLAVNMDEMVYHTRCVARGASKALVIADMPFMSYATPEQTYQNAARLMAAGARMVKLEGGDWLCDSIRHLTRNGVPVCGHLGLTPQSVHVFGGFKVQGRDEFQAQEIYRQALELQAAGIQLLVLECVPTALAERITKALRIPVIGIGAGPATDGQILVMHDAFGVTSGYVPKFTKNFLAETGDVRAAIRLYVQQVSEGSFPGPEHCFN
>NZ_CP023817.1|WP_098970493.1|3000710_3001568_-|pantoate--beta-alanine-ligase
MLVVNNPVVLREQISQWRREGRAIAFVPTMGNLHQGHLTLVKEAHSHAEKVVVSIFVNPMQFDKVEDLANYPRTLEQDCAALEAAGVDMVFTPTPEIMYPQGLASQTFVEVPGLSGLLEGALRPGHFRGVSTVVTKLFNLVQPDVACFGQKDYQQLALIRKMVADMAMPIEIVGVPTVRAEDGLALSSRNGYLTAAERALAPELARTMNWIAGQIEAGDHHLPSLVAQASQRLDNAGFRTDAIDIVDAATLESATDESAQLVILMAAYLGKARLIDNQVVTLQQA
>NZ_CP023817.1|WP_042063121.1|3000335_3000686_-|antibiotic-biosynthesis-monooxygenase
MSKKVYCIAQFLPKPGQEQALFQVLQALEPNTLREDGCLQYRVTRHIPSPFAEGESFPIVFNEIWQDMAAFEAHCQRAEITAFFERYCLADDGLAAKWNVCVYSDEPEQYDAPVKK
>NZ_CP023817.1|WP_098970492.1|2998811_3000191_-|cation:dicarboxylase-symporter-family-transporter
MFTLFASLLFCLLCFALTRLPATVPLSRKVLAGLLLGGLFGLGLQLGWGADDTGVQQTLEWVNIVGGGYVSLLKVVMMPLVFTSILSAINKLEQAQSLGKISAVLIGSMLTLVMIAGVVGMTITHLSGLTATGLLSHGSDSAALQQSMSTIDSAQTLPALLLSLVPTNFAADMAGSRGLSVIGVVIFTVLAGVALLQLKAEHPEAGARAAVAIDTLQLWVMKMVRVVIALTPYGVMALIARVVAHYPLSEILNLLGFILVCYVAILAMFVVHMVILLLIGQNPLHYLREVWGVLTFAFVSRSSAASIPLSIETQQRLGVPASIANFAASFGANLGQNGCAGIYPAMMVAMIAPMLGINPFDPLFLLTLLPVIALGSIGVAGVGGGGTFAALIVLSTLNFPIALVGVMIAIEPLVDMGRTALNVNGSIMAAMITKRLLGKQQLAEVQSQEQALEQQQAAS
>NZ_CP023817.1|WP_098970491.1|2998201_2998729_+|rhodanese-like-domain-containing-protein
MMTLRSRTLLASLIAASFALGGCGDNQFEQEVKLEQSAVQLAQETQQGGYQLLTVAELKTRMDKGEELVIIDTMPYEDSYKKEHIPGAKNFVFVKEAKSGDNWSEIIEGSGTAEQFQALLGEDKSRPVVIYCGFVKCGRSHNAAAWAVTQGYQQVYRVPGGIFAWKGAGYPVSAE
>NZ_CP023817.1|WP_098970489.1|2997777_2998197_+|methylamine-utilization-protein
MPALLRILAKLALGGFFVASAGFKLVSPALFVEQIAAFGLIWTPLIPFAAWGLIALELCAGLAVIANRRWGLWLVIGLLALFIPVLGYGIAIGLDISCGCLGKADLSSLPQAMVRDLLLLTLTGALLRPSRPVFPVLKE
>NZ_CP023817.1|WP_098970487.1|2996750_2997524_+|ABC-transporter-permease
MNLTTYYIAFKSILAKEVSRFTRIWIQTLVPPAITMSLYFVIFGNLIGSRIGDMGGFTYMEFIVPGLIMMSVITNSYSNVASSFFSAKFQRNIEEMLVAPVPNYVIIAGYVGGGVARGLCVGLIVTLVSLFFVPLQIHHLFSVCFTVLLTSILFSLGGLINAVFAKTFDDISIIPTFVLTPLTYLGGVFYSISLLPSFWQGVSQVNPIIYMVNAFRYGFLGISDVPLGTAYLIIIGFIVALYGIAWWLISRGTGLRH
>NZ_CP023817.1|WP_098970485.1|2995836_2996754_+|ABC-transporter-ATP-binding-protein
MNALEISGLKKTYQGGVEALKGIDLTVKQGDFFALLGPNGAGKSTTIGVISSLVNKSAGKVKVFGYDIDSDLEQAKAQLGLVPQEFNFSQFEKVIQIVTHQAGFYGVPKAEAKIRAEKYLRQLDLWEKRDMAARTLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIEIRRSMWSFLKELNEQGVTIILTTHYLEEAEMLCRNIGIIDKGRLIENTSMKNLLGKLGRETFLLDLAPGSAVPDVPEFNGRMPDERTLEVDLDKSQSLNSLFEQLSNQQVQVVSMRNKANRLEELFVSLVEEGRKA
>NZ_CP023817.1|WP_172954017.1|3005125_3006034_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSVNTTPLPHIRPYVGRFAPSPSGPLHFGSLIAALGSFLQARAQQGRWLVRIEDIDPPREMAGAAGLILHTLEAYGLEWDGEVMYQSDRHDRYDQIIAQLYQAGDLYWCRCTRREIMAAGGLYSGHCRPLGLTAEGCAARLRQHQPVYYFEDRLQGHIAVPAALAEEDFIIRRRDGLYAYNLAVVVDDMDSGITEIVRGADLLEPTVRQIALYQTLEAPVPDWVHLPLAVLADGNKLSKQNHAPALALDEVRPALWQALHFLGQCPPPELMASRIDEITGWGIANWQLERVPASQKIPLHVE
>NZ_CP023817.1|WP_042023554.1|3006145_3006595_-|RNA-polymerase-binding-protein-DksA
MPTGESRKSLGPLAIAGVEPYQVQPGEEYMNDKQKTHFRKILGAWRNQLMQEVDRTVDHMKDEAANFPDPVDRAAQEEEFALELRTRDRERKLIKKIEKTLVLLEDDDFGYCEHCGIEIGIRRLEARPTADLCVDCKTLAEIKEKQMAG
>NZ_CP023817.1|WP_098970497.1|3006732_3007458_-|DNA/RNA-nuclease-SfsA
MKFDPPLQFGQLISRYKRFLTDVQLDNGELITIHCANTGAMTGCAEPGTRVWYSTSDNPKRKLPNSWEIAESPAGHFICVNTARANQIARELIEQQALAPLAGYSRLRTEVKYGEENSRIDLLLEDDEKGNCYIEVKSVTLLDEREGAGMGYFPDAVTARGAKHLRELMAMKAAGHRAVLLFMVLHSGITRMRPATHIDPHYSLLIEQSIAAGVEILCYRPHVGVYGMVAQNFIPFESGHL
>NZ_CP023817.1|WP_098970499.1|3007454_3007982_-|RNA-2',3'-cyclic-phosphodiesterase
MAKLFFALPIKALAPELIGWRDQQPWPGQPVPQANLHLTLAFLGEADELTTRRLIAAVEHQHCPPLSIRLDETGWFSRAKAAWIGPKAWPNELNVLARALRRHGEKLRLGNGEQGYRPHVTLSRKAGEAPATLSAPNFLLQADEFCLYQSISTSDGVRYQPLACWPLRTREKVSA
>NZ_CP023817.1|WP_098970501.1|3008157_3010605_+|ATP-dependent-helicase-HrpB
MSQLPIVSVLPELFAALDSHSSVILQAPPGAGKSTLLPLELVRQNRLPGRIIMLEPRRLAARNIASFLARQLGEKVGERIGLRVRGESRTSGQTQLEIVTEGVLTRMLQQDPELTGVSLVIFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALERLLPDAPVIRSEGRGFPIDYHYRPANRQQWLDPQVGAVVLEALAAHRGSLLVFLPGQGEIERLAQWLADKLPDDVTLAPLYGRLDMAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVIDSGLERRASFDLKSGVTRLETRQIAKSSATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGLLQDAAQWGARVEDLPLLDMPPAAAVASSQRLLVALGAMKPEGEQQLTAAGRAMAAFGTHPRLARMLLRARELESEGLTGIVADAAYLVALQEEDMRGSERLSVLFHRRQSALRQGAARWFERLGARPANAQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGVSCDLVEGHPCQGQAALIAIEMGQNDRGSRIFIAEPVELDELVRLLPELVSERQWFDWDEREERVRAERQLVLGELVLSQRPLTELSDEQKGRCLLQGIRRKGLHVLPWDESSEGLLARLRCARDWLPDEGWPAMDNDSLLAGLEQWLLPAVSGMTRLEQLKKLNLGDILRQSLPWPLPKRLDEALPSHFAAPTGSRVRIRYQPGQAPVIPVRIQEMFGQGSTPCVADGRVPLVVELLSPAQRPLQITADLAAFWAGSYEQVKKEMKGRYPRHYWPDNPLDAMPTKVIKKKMGI
>NZ_CP023817.1|WP_098970503.1|3010678_3012994_+|penicillin-binding-protein-1B
MATQRRKSPPKKAAPKRTIWRKLFWLGFKLSLVVAAFMVVFGIYLDTKVRERFDGEKWQLPVMVYSRPLELYPSQRISQAQMLRELNMLSYKQVRQPHTPGEYSINGNRIELIRRPFQFYDGADGARGLRLTFNGPRLEGIQSLENQRQLGYAQMDPVLLDRLNTEDREDRLLVRLAEVPDSLLVTLLTTEDRDFYQHGGVSPVAIIRAMAANLLAGRTVQGGSTLTQQLAKNFFLTRERSLWRKLQEAYMAVLIDYRYSKDEILESYLNEVYLGQNFSQGVYGFGLASYFYFGIPANELDIDQVALLVGLVKGPSYYDPWRFPERAKTRRDLVLKLLMDHGSLQPAEYDLASRQPLGIIARGQMSYGRTPAFMGLLKREIQSRFGADLLKQSGLKIFTSLDPIAQHAAEQAVEFGLRDIEKLRGKKRLEAAMVVSDWHKGEVVALVGGRDPRYAGFNRALDARRQIGSLVKPAVYLTGLSNGLTLATPLKDQPIRIRGQDGQIWTPQNYDRKFRQSVPLMDALASSLNVPTVNLGLQVGLEKVVDTLHKLGVQQEIQPYPSLVLGAVALSPMEVNQMYLPIANQGLTQPLSAIRAVVNGDGALLYQHDQTAKRVTDQQASWLTLFAMTKTVSQGTARALSAKFPGATMAAKTGTTNELRDSWFAGLDNNELVSIWVGRDDNTPAGLTGASGALQLFSGYMSQRGVNSLGLKMPEGVSWANFSRASGTHVTNGCPGSLQVPAKTATMGSPAGCASSSPRSALDDLLGSFFN
>NZ_CP023817.1|WP_098970505.1|3013053_3013455_+|VOC-family-protein
MTFPLFDAIHHVAIIASDYPRSRHFYHQVLGLPIIAETLREARQSWKLDLALPDGSQLELFSFPITPSRPSTPEACGLRHLAFRVSDLDRVIAHLLTHQVVVEPVRVDELTGKRFTFFADPDGLPLELYEAPR
>NZ_CP023817.1|WP_098970507.1|3013532_3013853_-|ligand-binding-protein-SH3
MHPLIIVFGAALLDIGANMAINRSRGFRYKGWGVLGIMLVLGAFTLLSEVVSNGKIDLAVAYATWGAIGILGTALGGLLIFRERLKPIGWAGMMVMALAVAMLTTA
>NZ_CP023817.1|WP_098970509.1|3013840_3014242_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter
MLISRMLLARIFLTGAIITEVAGTSSMAMIPEDAAGWMNYLPMWVLISISYLLLAKAAKTISIGIAFALWEGLGIALITVVSVLFLDYNLNAQELIGLALAIVGIVMVTMGETHDEPVTGSETTNAKEAVCTR
>NZ_CP023817.1|WP_042023540.1|3014399_3015281_+|LysR-family-transcriptional-regulator
MKLYQIELFVESANSGSIASTARRLGKSRSAVSTAIAALEVELGVELFERGANQSRLTEIGELVLDDCTRLLQAANSLQQKCEHYASGAEVALRIARDDAIPEQVWRELLAALRSQFPGTSISLVLASPPELPALVEEGFVDAAFGLITEDQERSGLNIDVLNPIRTLMVVAPSHPLASLKRVLQQDLTEHTQVTLSYVDEFSVKSLLPVGGKHIGLSSFELMRNAVLDGLGWAVLPSPLIQSQLRQGSLLTLKHKFSLQWRDYGVYLAENAYHGKVLAWLKKSIQGYLEPFE

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Crispr_ID: NZ_CP023817_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_7

4190350-4190496

Orphan

Consensus_repeat	Method
GGTTGACGGTGAATTTTTACAGCCCTAACAGCACAGGAATGCACGATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023817_7

>merge|NZ_CP023817|7|4190350-4190496|CRISPRCasFinder
GGTTGACGGTGAATTTTTACAGCCCTAACAGCACAGGAATGCACGATGTGGATGGATTCTTCCGGGATGCATGGGGCTATGGACAACGACTTCATAGTGGTTGATGGTGAATTTTTACAGCCCTAACAGCACAGGAATGCACGATGT

>NZ_CP023817|7|5|4190350-4190496|CRISPRCasFinder
GGTTGACGGTGAATTTTTACAGCCCTAACAGCACAGGAATGCACGATGT	GGATGGATTCTTCCGGGATGCATGGGGCTATGGACAACGACTTCATAGT
GGTTGATGGTGAATTTTTACAGCCCTAACAGCACAGGAATGCACGATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_098971881.1\|4183253_4183988_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235647
NZ_CP023817.1\|WP_005342935.1\|4195499_4195676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_068978683.1\|4193891_4194713_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP023817.1\|WP_098971896.1\|4196155_4197433_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP023817.1\|WP_042024562.1\|4180702_4180954_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP023817.1\|WP_139245159.1\|4188859_4189036_+\|lipoprotein	unknown	unknown	gnl\|CDD\|338858
NZ_CP023817.1\|WP_098971890.1\|4192072_4193038_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP023817.1\|WP_098971888.1\|4189068_4190319_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP023817.1\|WP_098971877.1\|4181033_4182197_-\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|225613
NZ_CP023817.1\|WP_139426007.1\|4183984_4184914_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP023817.1\|WP_098971894.1\|4194841_4195339_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP023817.1\|WP_098971879.1\|4182207_4183257_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|377333
NZ_CP023817.1\|WP_098971898.1\|4197615_4201332_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP023817.1\|WP_098971892.1\|4193071_4193782_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|182696
NZ_CP023817.1\|WP_042024591.1\|4201571_4202468_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NZ_CP023817.1\|WP_098971883.1\|4185237_4187757_+\|class-I-adenylate-cyclase	unknown	unknown	gnl\|CDD\|236522
NZ_CP023817.1\|WP_068978680.1\|4191399_4192080_+\|DUF484-family-protein	unknown	unknown	gnl\|CDD\|225701
NZ_CP023817.1\|WP_098971900.1\|4202563_4203808_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP023817.1\|WP_042024573.1\|4188471_4188786_-\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|274572
NZ_CP023817.1\|WP_098971886.1\|4187821_4188475_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|334855

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098971881.1\|4183253_4183988_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|235647	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.	2.65471e-58
NZ_CP023817.1\|WP_098971900.1\|4202563_4203808_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.95067e-19
NZ_CP023817.1\|WP_068978683.1\|4193891_4194713_+\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	5.1502e-52
NZ_CP023817.1\|WP_098971896.1\|4196155_4197433_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.07402e-70
NZ_CP023817.1\|WP_042024562.1\|4180702_4180954_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	0.00323377
NZ_CP023817.1\|WP_139245159.1\|4188859_4189036_+\|lipoprotein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000132038
NZ_CP023817.1\|WP_098971890.1\|4192072_4193038_+\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	2.20294e-156
NZ_CP023817.1\|WP_098971888.1\|4189068_4190319_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP023817.1\|WP_098971877.1\|4181033_4182197_-\|heme-biosynthesis-protein-HemY	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	1.17866e-81
NZ_CP023817.1\|WP_139426007.1\|4183984_4184914_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	0
NZ_CP023817.1\|WP_098971894.1\|4194841_4195339_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.17683e-28
NZ_CP023817.1\|WP_098971879.1\|4182207_4183257_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|377333	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase. This is a family of bacterial putative uroporphyrinogen-III C-methyltransferase proteins. It forms one of the members of a complex of proteins involved in the biogenesis of the inner membrane in E.coli. Uroporphorphyrin-III C-methyltransferase (HemX) is a single spanning inner membrane protein that regulates the activity of NAD(P)H:glutamyl-tRNA reductase (HemA) in the tetrapyrrole biosynthesis pathway.	6.44051e-94
NZ_CP023817.1\|WP_098971898.1\|4197615_4201332_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP023817.1\|WP_098971892.1\|4193071_4193782_+\|HAD-IA-family-hydrolase	gnl\|CDD\|182696	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB.	7.09705e-63
NZ_CP023817.1\|WP_042024591.1\|4201571_4202468_+\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	7.05465e-150
NZ_CP023817.1\|WP_098971883.1\|4185237_4187757_+\|class-I-adenylate-cyclase	gnl\|CDD\|236522	PRK09450, cyaA, class I adenylate cyclase.	0
NZ_CP023817.1\|WP_068978680.1\|4191399_4192080_+\|DUF484-family-protein	gnl\|CDD\|225701	COG3159, COG3159, Uncharacterized protein conserved in bacteria [Function unknown].	1.92879e-36
NZ_CP023817.1\|WP_042024573.1\|4188471_4188786_-\|iron-donor-protein-CyaY	gnl\|CDD\|274572	TIGR03421, FeS_CyaY, iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.01642e-52
NZ_CP023817.1\|WP_098971886.1\|4187821_4188475_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	7.09847e-37

>NZ_CP023817.1|WP_098971888.1|4189068_4190319_+|diaminopimelate-decarboxylase
MDHFNYDADGQLQAEQTSLQQLAEQYGTPLYVYSRATLERHWHAFDTAAGNIPHLICYAVKANSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILCFNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAIYRKAAAMANIEIVGVDCHIGSQLTELTPFMEAADKLLRLIDELAAEGIRIHHLDVGGGLGVNYGAEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGETRNFALIDAGMNDMLRPSLYGAWMNIIEVDSRAGHAPALYDVVGPVCETGDFLGKERTLAIGEGSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGAESHLIREREQLADLWRGEHLLP
>NZ_CP023817.1|WP_139245159.1|4188859_4189036_+|lipoprotein
MITQFTKCLLATLLSLGLAACGLTGPLYMPPPEQPQSQSTPQSAPPATSEAATEAAPH
>NZ_CP023817.1|WP_042024573.1|4188471_4188786_-|iron-donor-protein-CyaY
MKDHQYHALTDTFFQYVEDIIDEGYPDIDCERNGGVLTLSFENKTKVIINKQEPLHQIWVATRENGFHFELQGETWIDNRFGHELKALLSRSCTTQAGETVVFP
>NZ_CP023817.1|WP_098971886.1|4187821_4188475_-|alpha/beta-fold-hydrolase
MIDLYPQDARHAVIWLHGLGDSGAGLAPLVEALDLPTELPVRHLLPDAPERPITINMGYKMRGWYDIKSFEDPAERAVESHVRESADQIAALLDQLVTEGFSPERIVLVGFSQGGVIASFTVLRYQAKLAGLLCMSTYLAAPDALLGEMSEAARTLPICYMHGIYDDVVSLSLGWDAKNRLESAGLTPEWHEYPMRHEICRPQLDDIRRWLLARLGA
>NZ_CP023817.1|WP_098971883.1|4185237_4187757_+|class-I-adenylate-cyclase
MQEHIDTLVARYDDITRLKTQRALGLMSRYGQQVFQLLPVMLHFNHPLLPGYVSGDVPHGIWSFSATAEQQAFIDDLCRNANCLNGLATQDRAIQGLYSMGSTSSIGQCCHSDLDIWVCHVAGLSQERLDLLDQKCQQLSKWAEQRGVDLNFFLIPEDKFRQTNDAQMQGESCGSAQHLLLLDEFYRSAMHIAGKRLIWYLVPIACDDHYDAYVNELFESGKLKQDDWLDLGSFDRIPAEEYFGSALWQLYKGIDSPYKAVLKSVLMEAYSHEYPDTRLLSMIGRDWFQHNEGMHYRLDNYSLMLDKVTNYLKSIGDMARLDLVRRCFYLKVCDGLSHPKDDHSPEWRRGQMSQLVSYWGWSQQKLYQLDHRHEWKIEEVKIAHAELLEALMQSYRNLIQFARRNNISESINPEDIGILSRKLYAAFESLPGKVQRINLKIAPDLSEPDLSLVQVPHGRLNRAGWYLYKHSLEPVDIIGRAPLEFNGYISKLVSWAYFNDLLTPQSRVHLFNQGSDLHIDNLHQFCRDLSGCFPEKYPLATNLALSRPCEIRQLSIFLNLEMDPTSHWVGQVIEFDANTVDVFSFGRNQECLVGSVDLVYRNSWSEIRTLHFQGDEAVVDALTTILGKMHQDAAAPEMIEVFCYSQHFRSLLRSRFETLVAECIDLRLARDKQQLVKTMALGKEKYGIFFERRGVSVKKLENAIDFYRHISHNKLDHLPLRLDKTHSQHLPSIVDAYASEGLVQFFFDTRDAGTNIYILDEANRVEIYQHFAGNKDELVAGVNRFYTSSHERFSDDGQFINFNLPQYYEIVQQGGELAVISYRSQGMLREQAPPTREVG
>NZ_CP023817.1|WP_139426007.1|4183984_4184914_-|hydroxymethylbilane-synthase
MAARTLKIATRKSPLALWQANFVKDRLEALHPQLQVELVPMSTQGDKILDTPLAKVGGKGLFVKELETAMLEGRADIAVHSMKDVPVEFPEGLGLHTICEREDPRDAFVSNRFKAIAELPQGAVVGTSSLRRQCQLRAARPDLVIRDLRGNVNTRLAKLDGGEYDAIILAAAGLKRLEMAHRIAAFIEPEQSLPANGQGAVGIECRLDDVELHALLAPLEHAETRTRVLTERAMNRALQGGCQVPIGAYALVEGDQIWLRGLVGSPDGTQVIRDEIRGSVSDGEALGEQLAQRLLAAGADVILAEVYRG
>NZ_CP023817.1|WP_098971881.1|4183253_4183988_-|uroporphyrinogen-III-synthase
MIPLVVRPAAQATELVQLLRQHGHAPLCCPLLETVAGSELPYLPDLLHSADIVIAVSLHAIHFAHDFLLQTGQTWPHIEYFAVGQASADGFAAIGIAAICPDDPRSEGLLALPALQQLVGKRVLILRGNGGRELIADTLASRGALVHYCAAYERHYPEFDGEQLTHHWQAAGLDSLLITSGELLQRLLALVPDHQRPWLFGRLLVVPSPRVAEMASAAGFIHITIAQGASNQALMAALELRKME
>NZ_CP023817.1|WP_098971879.1|4182207_4183257_-|uroporphyrinogen-III-C-methyltransferase
MTEQQESQVKPQPTAVVNNSKSRSGTVLGGVAILLALGLTGGLYLHGHQNAVAQQAELAQLKQQLASALSKIDQTSSKDAEQLATLDQTQQRLQGEMQGLQNRVLDLNDKRPNDWMLAESEYLVRMAGRKLWLEHDLISAITLLGNADERIRALNDPSLMPIRKALAEDITKLKGMPRIDREGLTLKLAALEDQIELLPLSTVSMPEAKLEADQAVTANPDEWESNLKKNWVKFTENFVTIRRRDGAVEALLSPQQEIFLRENLKTKLLQAQISVYREQQTLYEDSLDKAQRWLTQYFDTENSATRYMQGEIDKLKGEQIQIDYPEQFKTQAMLEQVLTERLQRILASN
>NZ_CP023817.1|WP_098971877.1|4181033_4182197_-|heme-biosynthesis-protein-HemY
MIRIIILVAVMVAGLIFGPQASGNKGYVLIALGNYTIESSVTSAVILAVLFYGALLLIEWLLGRVFGLRRKTQGWYGSRRRRKANQQTVAATLAMAEGHYSQAEKLMIKGASNSDTPLLNYLSAAKAAQARGDDARRDQYLQKAQEENPKAELALTLTQTQLQIEQGQYDTALAMLESVYALNPRHPMVLDQLRQVHLARQDWSALCDLIPALHKVGKLTPKQEEDLLQQAWSGRLQQAASSLETLKAVWQDLPRKLRLEPELLACYGDLLRQLGADGEAATLWQEALRKQPMPQLLARLPKLKLDNYQPLLALLQKQQGQPHVDTALAQLYLLAGQLDDAQKLLEQEVVSAPSAAAYHALGQLMDKRRLTNKANEYYRQALELAGI
>NZ_CP023817.1|WP_042024562.1|4180702_4180954_+|YkgJ-family-cysteine-cluster-protein
MECRSGCAACCIAPSISSAIPGMPDGKPAGIPCVQLDGVLGCKIFGLPERPAVCGGFRPMMDVCGSHRAEAIWLIGELERLTG
>NZ_CP023817.1|WP_068978680.1|4191399_4192080_+|DUF484-family-protein
MSELKRQEQAVDEAAVLEYLSRYPEFFQRHVTVLDRIRIPHERKGSVSLVERQLDRQRERIEQLELEITELMGIASENERIFRVYADLYGELYGCQTLFEVSAVMGKAFVQRLRLTGLRLWLNPKRFALSGPEQRFLAQGKQLESLLGQRLPGQDYYFGRLSQSEKQALFGHDVLVNSVALMRLGDLGVLAFASSDPSHFSPHNDTLLLGQLGRLLQLRLPELTRG
>NZ_CP023817.1|WP_098971890.1|4192072_4193038_+|tyrosine-recombinase-XerC
MARESANTSPASEPLPSALADELAAFIEYLRVERQLSPHTRTNYQGHLDAMTAELVRLGLCDWGQLDASQVRTLVTRMHKGGLAPRSLATKVSALRSFCDWQVRQGRLTANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGVNLVDLKLDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPLLAGDESEALFLSSRKQRLSARSVQARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKRDPDAQEDE
>NZ_CP023817.1|WP_098971892.1|4193071_4193782_+|HAD-IA-family-hydrolase
MHFYRRWQPVAAISFDLDDTLYDNGPAIVRAEQWMLDHLRSEYLATAMLDKPRWLALKRTVLNGAPELHHDVSLARQQTIRAAMVAGGMADQQASREAEQVFAAFLAERSKIEVSESTHQLLARLAARYPLVVITNGNLDLAQAGLDRYFTLICKAGAGTRMKPAADMFEQTRSALKLPPEQILHVGDHPETDVLGARLHGFRAAWLNERQQPWHSLQLLPDVEINGLEELAGLLL
>NZ_CP023817.1|WP_068978683.1|4193891_4194713_+|HDOD-domain-containing-protein
MPTIDSLLAEPKLLPQIPEVMRDLIQTFNEKDPDLLKVSKLINKDPVISAKLLRLANSAKFGSSRQVATVNEAAVRLGLAMVRNMVLACGLTESVKAVPGINLQHFWGCVFNVAELARRLAVKKGMKGEEVFTCALLHDLGRLIMHVGLPENTVNHIHDLEQHKGRAKAEELVIGFNYAQVGAAMARYWKFPDTISNAVEYHYNPMKAKEFSSEAGFIHLAIVLAAQSDVGEEAPPEWPQSVAEQLGLTWADCAAQFSALREQGNGYAGLLAA
>NZ_CP023817.1|WP_098971894.1|4194841_4195339_+|GNAT-family-N-acetyltransferase
MIASSRLNLREMIATDAPFILELLNDGDFYRYIGDRGIRTLEQAQEYIQQGPAVSYARYGHGLYLVERKEDGASLGICGLIKRDTLEQVDIGYAFLPQYRGQGYAIEAAQAALADGKSRLGIGQVVAIVTPGNERSIGLLAKLGLVRSRLVKLSEDADECLLLEQ
>NZ_CP023817.1|WP_005342935.1|4195499_4195676_-|hypothetical-protein
MMKAVQTHKPLRRSKPINLPPQEQDSDAFLIQFSTRFSGGFAISCDGIAGEFSIEDLN
>NZ_CP023817.1|WP_098971896.1|4196155_4197433_-|sodium:proton-antiporter
MSVYYTLCFLAALAIFIAFANQYVVKIQTTIAITAGSMVISALLVLFGKLGWFNLEPLAVKTMQSIDFQNFLLKGILGFLLFAGGLGINLKALRSQKWEITILSIVATLLSTFIIGYGFWFIAKLLGWELPLVYCMLFGALISPTDPIAVLAIVKKMQAPPQIAIQIEGESLFNDGVGLVIFATVFAVAFGGVEPTFGSVAGLFLHEALGGILFGAVLGLIAHVMISATDDGSLELLLTLCIPTAGFAFANMIGVSGALAMVVTGIMIGNWTRHSGFSEQSRHHLDHFWELMDQFLNALLFLLIGLALVLLELSWHDWVLLVIAVPLCLAARFISVSLPYVAFRRFRNYNTFSVRILTWGGLRGGLAMAMALALPSGVMMIPDHGVDLREVILVMTYSVVMFSIVVQGMTITPMITAAKKACGDY
>NZ_CP023817.1|WP_098971898.1|4197615_4201332_+|methionine-synthase
MDVEERVVANRKPSIKSDITKKLEFCLKERILIIDGAMGTMIQGYKLGEADYRGERFADWHTDIKGNNDLLVLTRPAVIREIHDQYCAAGADILETNTFNATRIAMADYEMEEFSAEINREAARLARAVADEWTAKDPAKPRFVAGVLGPTNRTCSISPDVNDPGKRNVTYDQLVAAYTESTHALIEGGADIILIETIFDTLNAKAAAFAVEGVFEELGYSLPVMISGTITDASGRTLSGQTTEAFYHSLRHVKPISFGLNCALGPDELRQYVEELSRISESHVSAHPNAGLPNAFGEYDLDAGEMAAHIREWAQSGFLNMVGGCCGTTPTHIRAMSDAVAGIKPRVLPELPVACRLSGLEPLIITPESMFVNVGERTNVTGSAKFKRLIKEGLYDEALDVAKQQVESGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPVMIDSSKWEVLEAGLKCVQGKPVVNSISMKEGEEKFIQQAKLLRRYGAAVIVMAFDEVGQADTRARKFEICQRAYRILVDQVGFPPEDIIFDPNIFAVATGIDEHNNYAVDFIEAVKDIKTHLPHAMISGGVSNVSFSFRGNEPVREAIHAVFLYHAIQNGMDMGIVNAGQLAIYEDIPKDLKAKVEAVVLNLSDSATEDLLAIAETYRGAGAQAEDPRDQEWRSWPVGKRLEHALVKGITDFIEEDTEQARAEAEKPLHVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKRAVAYLQPYIEAEKQGSYSNGKIVLATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVSCETILKTAREVGADIIGLSGLITPSLDEMVHVAKEMERQGFKLPLLIGGATTSKAHTAVKIEQNYSEPVVYVSNASRAVGVAQSLLNPELKPAFVARIDKEYEIAREQHARKQPRARPVSLAHARANRQQLDWVGYQPPKPREPGVQKFENVPISVLRPYIDWTPFFLSWELAGKYPRILEDEIIGEEATKLFADANAMLDQLEQDGSVRCAGIIGLFPANTVGDSIEVYSDESRSEVKKVLHHLRQQSEKQGFPNYCLADYVAPKESGKPDWIGAFAVTGGIGEEAIANAYKADHDDYNAILIQAVCDRLAEAFAEYLHQQVRKEHWGYVPDEALSNEELIRENYQGIRPAPGYPACPEHTEKGSIWELLEVEQAIGMTLTESYAMWPGAAVSGWYFSHPDSKYFAVAQIQQDQVEDYAVRKGMTLAEAERWLGPNLS
>NZ_CP023817.1|WP_042024591.1|4201571_4202468_+|30S-ribosomal-protein-S6--L-glutamate-ligase
MKIAILSREPKNYSTRRLVEVAQARGHQVEVLDTLRCYMNIASHNPSIHYEGGELESYDAVIPRIGASITFYGTAVLRQFEMMNTMALNSSVAISRSRDKLRAMQLLSRHGIGLPITGYAHSTHDVPDLITMVGGAPLVVKLLEGTQGIGVVLCETQKAAESVIEAFIQTNNNILVQEYIREANGADIRCLVVNGKVVAAMRRQAQPGEFRSNLHRGGTAEAIKITPEERATAVQAAKIMGLDVAGVDILRSARGPLVLEVNSSPGLQGVEAASGKDVAGKIIEFLELKASRKNKPAE
>NZ_CP023817.1|WP_098971900.1|4202563_4203808_-|HAMP-domain-containing-histidine-kinase
MSLPSLRRRLIMALGGAGVVLLILLSGLMLVAEDKMEELSLRHWLEAEVTRYSDDWLRLGPAAAAPSPRQFSSYWTEAGRLPRWLKPYQIPGFFEHQLGKEDKHFLVARHPSGEGLLYLVFNDDADDYLDPYEDKLHLATRLIGLALLLSSLGFGIWLVRHITGPLQRLQHRVAHLTPDQADFEPDAPWQELRDIELALLAGKQEVSAVFAREQEFSRFASHELRTPNMVIQGSAALLGKVTDLPAPAARATTRIRAAADEMALLTETFLLLGRKEAVERPLQQVTPLIRQELARLAPLLQREALDIRLTLDESSEVNAPLSLLAIALGNLLKNALSYADGHIEIELCGPVLTISNPTAAAPDQILGYGCGLTIIQRICEKLGWQIETRLEDGIFSARLAMITAEQFPLPLGEG

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Crispr_ID: NZ_CP023817_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023817_8

4243716-4243816

Orphan

Consensus_repeat	Method
GTGACCATGCCATCTGACCTTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023817_8

>merge|NZ_CP023817|8|4243716-4243816|CRISPRCasFinder
GTGACCATGCCATCTGACCTTCAGCCGCTCCTGACTATGGGGATGCCTTCTGGCTGCGTGCTTACTGGATACTGCCGTGACCATGCCATCTGACCTTCAGC

>NZ_CP023817|8|6|4243716-4243816|CRISPRCasFinder
GTGACCATGCCATCTGACCTTCAGC	CGCTCCTGACTATGGGGATGCCTTCTGGCTGCGTGCTTACTGGATACTGCC
GTGACCATGCCATCTGACCTTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023817.1\|WP_098972809.1\|4238316_4239453_-\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP023817.1\|WP_098971968.1\|4241580_4242633_-\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP023817.1\|WP_098971960.1\|4235926_4236394_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023817.1\|WP_098971979.1\|4248392_4249463_-\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|183150
NZ_CP023817.1\|WP_098971984.1\|4250831_4253699_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP023817.1\|WP_098971977.1\|4247747_4248377_-\|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL	unknown	unknown	gnl\|CDD\|182192
NZ_CP023817.1\|WP_098971988.1\|4260896_4261646_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP023817.1\|WP_098971966.1\|4240585_4241500_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP023817.1\|WP_098971971.1\|4242748_4243648_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP023817.1\|WP_172954063.1\|4234516_4235602_+\|AI-2E-family-transporter-YdiK	unknown	unknown	gnl\|CDD\|182881
NZ_CP023817.1\|WP_005336040.1\|4249798_4249987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098971962.1\|4236895_4237990_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|254756
NZ_CP023817.1\|WP_098971955.1\|4232511_4232892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098971975.1\|4247029_4247746_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|183108
NZ_CP023817.1\|WP_098971982.1\|4250059_4250716_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP023817.1\|WP_098971992.1\|4262761_4263577_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023817.1\|WP_098971973.1\|4245801_4246884_-\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_CP023817.1\|WP_098971964.1\|4239470_4240589_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP023817.1\|WP_098971990.1\|4261944_4262847_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP023817.1\|WP_098971957.1\|4233077_4234520_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486

Protein	Function_ID	Function_description	E-value
NZ_CP023817.1\|WP_098972809.1\|4238316_4239453_-\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	4.71549e-145
NZ_CP023817.1\|WP_098971968.1\|4241580_4242633_-\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	1.15594e-141
NZ_CP023817.1\|WP_098971960.1\|4235926_4236394_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.44882e-10
NZ_CP023817.1\|WP_098971979.1\|4248392_4249463_-\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|183150	PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP023817.1\|WP_098971984.1\|4250831_4253699_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP023817.1\|WP_098971977.1\|4247747_4248377_-\|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL	gnl\|CDD\|182192	PRK10005, PRK10005, dihydroxyacetone kinase ADP-binding subunit DhaL.	2.12944e-132
NZ_CP023817.1\|WP_098971988.1\|4260896_4261646_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	5.64971e-64
NZ_CP023817.1\|WP_098971966.1\|4240585_4241500_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	8.79537e-176
NZ_CP023817.1\|WP_098971971.1\|4242748_4243648_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.19433e-65
NZ_CP023817.1\|WP_172954063.1\|4234516_4235602_+\|AI-2E-family-transporter-YdiK	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	9.2153e-143
NZ_CP023817.1\|WP_098971962.1\|4236895_4237990_-\|TIR-domain-containing-protein	gnl\|CDD\|254756	pfam08357, SEFIR, SEFIR domain. This family comprises IL17 receptors (IL17Rs) and SEF proteins. The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (pfam01582), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways.	1.90169e-16
NZ_CP023817.1\|WP_098971975.1\|4247029_4247746_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|183108	PRK11377, PRK11377, dihydroxyacetone kinase subunit M; Provisional.	1.34988e-90
NZ_CP023817.1\|WP_098971982.1\|4250059_4250716_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	3.29303e-96
NZ_CP023817.1\|WP_098971973.1\|4245801_4246884_-\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_CP023817.1\|WP_098971964.1\|4239470_4240589_-\|extracellular-solute-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.33346e-135
NZ_CP023817.1\|WP_098971990.1\|4261944_4262847_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.56044e-08
NZ_CP023817.1\|WP_098971957.1\|4233077_4234520_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	9.7803e-17

>NZ_CP023817.1|WP_098971971.1|4242748_4243648_+|LysR-family-transcriptional-regulator
MVFKQWPPLNVLRGFEAAARLGSFHQAAQELHLTQSAISQQIRSLEELLGQPLFHRQGRSVALTDAGQDLLETTQSVLLQLAMGIQRLEQYRKPNQLVLNTSTAIARHWLLPRLGEFHRLHPDIDLWLFTSDEEPDMAEQTIDLALRWDLAPQAECRHQHMVADRLLPVATPAVLAQPAAERTTLHGERALDWHHWTLKGGEDLQLQTRGLNFSDPGLLLEAASAGLGVALVSELLSRPVRQQGQLLPLSAHRVKGPQWDLLVHQESEGMPECRAFCHWLGQQFADGEPDREDDGLATL
>NZ_CP023817.1|WP_098971968.1|4241580_4242633_-|agmatine-deiminase-family-protein
MREQGIVAKGWFMPAEWCQHAATWMVWPHNKALWESGWGVTLAGVQQDFARVVNAIVRFEPVKLVVDPSALAEARALCDQRVTLVPIAVDDSWCRDSGPTFICHPELGSAGVSWRFNAWGGKSAHPLDEGLARRILNSLELDTIGSFLANEGGAIHVDGEGTLITTESVLLNSNRNPGISKGEIEQIFSRMLGIEKTIWLPGDPDHVTGDMTDGHVDGICAFSRPGQLLVDATRDTSSTYARIVRENRRALMLTTDARGRTFELQDLYEASEAIDAEAEVFCASYTNFYIANGAIIMPAYGVASDREAAAVLQRAFPQREVVPVQINQLAHGGGGIHCITQQQPAWPVKG
>NZ_CP023817.1|WP_098971966.1|4240585_4241500_-|N-carbamoylputrescine-amidase
MSNIVVATTQFACSWDLPRNLDMAESLVREAAAKGAGLILLQELFATPYFCIEQHHGHLALAESFEQSWVLRRFSALARELGVVLPISWFERAGNAFFNSLALADADGKLLGVYRKTHIPNAIGYQEKEYFSPGDTGFRVWECAAGRIGVGICWDQWFPEAARSMALQGAELLLYPTAIGSEPGAAYLDSRDHWQLTQRGHAAANIMPVIAANRIGNEVATTDPTLQMAFYGSSFITDHKGALLAEADRTTPGVLVQELDLAAMAEERMSWGIYRDRRPEMYGALLSLDGHHSQMAGNHRGVRT
>NZ_CP023817.1|WP_098971964.1|4239470_4240589_-|extracellular-solute-binding-protein
MTRKLSPTLALLTAILCNGTAIAAEELDQEQSAEKVLRLYNWADYFAPDTLSAFTKETGIRVIYDVMDSSETLEAKLMAGRSGYDLIFPGDTVAERLMRAGSLQPLDKSKLQHLADIEPGLLRIQQAYPRSRDAVVPYTWGTIGLTYNAGMIKQRMADAPVNSLDMLFKPELAAKFADCGISIIDSPDEVLAVVLNYLGREPRSGKAEDLDAALALLKGLKPHIRKFQSQPVTQLVNGDLCLSLGYSGDMTQASRSAAEAGKTAQFEYRLPKEGSTIWMDTMAIPTDAAHPEYAYAFINFVMRPANMAAITNSTGYPTASAKARSLVDATMTGNPDIYLDDATYQRLIPGQDISQPEMRARMRAWTRFKSSL
>NZ_CP023817.1|WP_098972809.1|4238316_4239453_-|agmatine-deiminase-family-protein
MPSRRNVLKQLAAIGVLAGLGNLPGKAHAASDNADESAVTASGEPFHMPDEAAPQAQVWVAFAASADIWGRDYKEVQATIGRLVKAMTPYTKVSVLCREEEEALARKLCGEQNTRFIVAELDDIWLRDTGGVFVQNGEGELGLVDFNFNGWGDKQEHEQDAGVAELVSQQADAHYLQSKLTGEGGGIEVDGNGTGIMTESCWLNSNRNPGVSKAQLEAELKANLGLRKIIWLPGIKGKDITDAHVDFYARFVRPGVVVVNMDNDPASHDYQVTRQHLAILKQATDADGNKLELHVLPPPLDVRDNRFSRSRDFAAGYINYLPINGAVIAPEFGDKAADRYCHDLLAKLYPGRKVVQINIDPVAAGGGGIHCITLHQPA
>NZ_CP023817.1|WP_098971962.1|4236895_4237990_-|TIR-domain-containing-protein
MAVKVFISYAHESIELANNVLEFSNLLRSKGVDSEIDQYEEAPAEGWPKWMMRQVQQADFVLICCSKLFYERANDFAGNDDGLGVKWESSLILQQLYGMSTNNTKFIPIIFDGKDKKYIPLPLQPYTYYQLDGDSNKQRLIDRLRGASKSKRPPLGEAAPIEEKVEELDPKERKSMFISSIIDVELWNEAKWSGMAFVSDPSLREPPIACFMFANEEAGEKIFSNLKKDFGDTDSKEEIRLSFIEGISKKAPRDYKVHFGSSRDVLVDKLDNYGMEKKSSLLVTISRIQEMNPPSDPSSLTVFKHSYGHFKTFFITNVVTKNGQLQPSLSNLIQKNKVFFRTKNEVIKDKNDEDYIVFGKIGKK
>NZ_CP023817.1|WP_098971960.1|4235926_4236394_-|GNAT-family-N-acetyltransferase
MIKLRPMTASEYPAYCDYFIDDYSREIAQNYGHSIDRAIELANQELLRSFPNGLKTDKHELLCIESDSELVGYLWHSINADDKSTFIYDFFIFSNRRNNGYGKLAISAFESKLTSIGIEQIKLRVAYQNQRALKLYQDVGFAISGYNMSKKIGLN
>NZ_CP023817.1|WP_172954063.1|4234516_4235602_+|AI-2E-family-transporter-YdiK
MNVKKVDLAKITLGVLFISILIISCFMVLQPFLPALVWATMITIATWPLMLMMQRLLWGKRSLAALFMTLVLLLIFVIPLFMTLANVAEKAPMLIELGTHISQSPPPELLWLQQIPLVGTKLYEFWQQILASGGQVLFAKLTPYFGQTARWLASQAGNLGLLFVHFLLTVGICGVLYHSGEVVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGVGLLIAGIPYAMVLVVVMFLLIVAQIGPFPVLMASVGYLYWSGDTTWGTFLLVWSLIAGTMDNFLRPFLIKRGADLPLILILVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWIKEDDQPAAAVAAPPKAE
>NZ_CP023817.1|WP_098971957.1|4233077_4234520_+|phosphatase-PAP2-family-protein
MSRTLFLLLLTLIAAAPALSAEPAAPTAAACAIRHQDQLLLVQDRISSRYSLSGGYIDGGESPQQAALRELHEETGLQGEVVQELGRWQRAVIFACRTLEPIIAQRNTAAQRNTAAQRNSAAQQGSGFVSILKAPNLGGEILNARLIAIDQLPREQRRFPDQLDWLQSRLDKVPESEVRWQADFVAQGSVLHQTEIPLIMRVQQWLGPDVWWLSVSNLFGSGGFQLALIPLLLPLLGWPRLRQLLFAMLWLGLLVQAGKEGIGWPRPFHLQPLLATQSAQGFGMPSGHTASALLFWGALLCWLWPTHRWRAISLALLLALVTGLARVWLGVHFISDVAAGLLIGGLLLAARPCWRLDGRVAGWLLLIATSLLIAGWVQSAHLAGIGLAAFGLWLGGLAPLPRDGHSPLLTGGVTLAGGAVIGAMLWGLPLLTSSSLTILIGQLSLFFGLGLWLSAGLWWILSFLKNDSRPKGKCPNKGIL
>NZ_CP023817.1|WP_098971955.1|4232511_4232892_-|hypothetical-protein
MRQFGFFLGIAIGVILILFGSIVIFQALPAALDVLEMPSRIPFVREVYTWLMTSANGLTAQLEQNFLEAFQTVLKLILLITFMWVCVKLVNMGVLIIRAGVDLIRTAIAHSEGPHDQKKPDQQDHF
>NZ_CP023817.1|WP_098971973.1|4245801_4246884_-|glycerol-dehydrogenase
MDRIIISPSKYVQGNGALANIGNYVKALGAKPLILADAFVTKLVGDTVATSFHGVGIKPEFDCFNGECSRPEIDRLLARCNQTPFDVIIGIGGGKTLDTAKSVAFYQKVPVVIVPTIASTDAPTSALAVIYTPEGQFSEYLMIPTNPNMVIMDTGVVSRAPVRLLVSGMGDALSTYFEARANKVSGCQTMAGGASTLAAQAIAELCYKTLLADGYKAKLAVEQGLCTKAVENIIEANTYLSGIGFESSGLAAAHAIHNGLTQLAECHHLYHGEKVAFGTLVQLVLENAPMAEIETVLGFCRSIGLPTNLHMMGVKELDMARLMAVAKASTAEGETIHNMPFKVTAEDVLAAIVTAHQLGL
>NZ_CP023817.1|WP_098971975.1|4247029_4247746_-|HPr-family-phosphocarrier-protein
MIGIVVVSHSAMLAAGLKALADQLGSPARLLLAAGVDDPDHPIGTDAIAVMSAIEEADDGSGVLVLMDLGSALLSAETALELLPPELSARVRLCPAPLVEGSLAAVVAAGSGMTLDEVAAEALGALGPKQAMLPASAVQAATETAPVTDDGWLRCEVLVDNPHGLHVRPAARLVAALKPFAAELKLQKGDKEANPRSLTRLTMLNVRQGDMLTLLARGEDATAALACFQQLAAERFGD
>NZ_CP023817.1|WP_098971977.1|4247747_4248377_-|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL
MLSKHHIVNWLLDCEHIFTEQRDYLTALDTDIGDGDHGLNMQRGFTKVAEKLPAVADKDIGQVLKTTGMTLLSSVGGASGPLYGTFFIRAAASTDACQSLSLSQLCKMLSDGVEGIVSRGRAEPGDKTMCDAWWPALAALQQAQQQDLPLNDALDKAVAAAAAGTEATIQMQARKGRASYLGERSIGHQDAGATSTLLLLTALRDRARL
>NZ_CP023817.1|WP_098971979.1|4248392_4249463_-|dihydroxyacetone-kinase-subunit-DhaK
MKKLINAVDAVVREQLMGMAAAHPELKVRIEPHYITRADSPVMGKVALVSGGGSGHEPMHGGLVGKGMLDGACPGEIFTSPTPDQMYECGQAVDGGAGVLFLVKNYTGDVLNFETAVELLHGDGVKVGFSLIDDDVAVKDSLYTAGRRGVATTVLCEKLVGAAAEAGYDLTRCEALARRINNQSRTIGVAMHACTVPAAGKPSFTLADNEMEFGVGIHGEPGIARRPFTDLNTLVDDMFSELADNTPYGRTLRHWDRASGSWQEEHTFIETLNAGDRVIALVNSLGGTPISELYGVYGRLATLCEAAGIHLVRNLIGPYCTALDMTGISITLLKVDDELMTLWDAPVHTPALRRGC
>NZ_CP023817.1|WP_005336040.1|4249798_4249987_+|hypothetical-protein
MDISSSANASFGSALMTASLAKKQQTQEGEAALKLLQNAAQSAPVAPTSASASLGSKIDIRV
>NZ_CP023817.1|WP_098971982.1|4250059_4250716_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MFEYSPPLEPWLEILFKDKDIMVVNKPTGLLSVPGRGPENEDSVLHRVKQQHPKAAAAHRLDMSTTGVIVIPLNPNSHRELSRQFRERETEKHYLAWVWGEPEAESGQVDLPLCVDWPNRPKQKVDHEEGRHALTLWEKLKVENGNSLIKLTPITGRSHQLRVHMLELGHPILGDNLYAHPDALAAAPHLYLHAAMLTISHPRSGEPMTFEAPAPFPL
>NZ_CP023817.1|WP_098971984.1|4250831_4253699_-|RNA-polymerase-associated-protein-RapA
MPFALGQRWISDTETDLGLGTVVAVEGRMVTLLFPATGENRMYAKEEAPVTRVSFNVGDQIATHEDWTMTVEEVQEKDGLLIYVGVRTDNDEPVALKEVFLSNFIKFNKPQERLFAGQIDRMSRFTLRYEALIHQHKRRLNPTRGLAGGRVSLIPHQIYIAHEVGHRYAPRVLLADEVGLGKTIEAGMIIHQQLLSGRAHRVLILLPETLQHQWLVEMLRRFNLHFSLFDEERCIEAFADAENPFETEQLVICSLDFLRKKRRRFEQVLEAEWDLLVVDEAHHLEWSEEAPSRAYEMVEALAEQVPGVLLLTATPDQLGHQSHFARLRLLDPERFYDYEAFLAEEQAYGQVASAAQELLDGETLSDEARQILASQLEGLDLGDAAARQQAVAKLLDQHGTGRVLFRNSRANIQGFPERHLNVYPMPLPEQYKTAIKVMGMMGGNGGDLQTRALRYLYPEKIFQQFEGDNATWTQFDPRVEWLLELLLSARQQKVLVICSEAATAIALEEALRTREGIRGAVFHEGMTILERDKASAYFAQQESGAQVLLCSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDRIGQQNIVEIHVPYLEGTAQRALQLWYHDGLDAFEQTCPTARPVFEAVRDELFELLAANTGDQATLDALLIKTRELHEPLKARLEQGRDRLLEIHSSGGAAAQQLVDKLAAEDGDTGMISFALKMFDEIGVNQDDRGENALVLTPGDHMLVSSFPGLPQDGMTITFDRPTALSRDDMALLCWDHPMMRGGIDLILGSEIGATSVALLKNKALPIGSILLELIFVAESAAHPQLYRFMPPTPIRLLMDKNGQNLGEKVAFDAFNRQLTPVNRHLGSKLVTASQPVIHGLIGKGQPIAEELKAVIVDKARAQMAQTLQQDLDRLEALKAVNPSVRDSELDYLRDLQAELHHLIDQTQLKLDAIRFIVVTHN
>NZ_CP023817.1|WP_098971988.1|4260896_4261646_+|thioredoxin-domain-containing-protein
MTIKNALFCALAGVTLLAAPVHASELTKSDVEQIVRNYLVKNPEILVEMSNALRAKQESQQAESDKALLKAHSKQLYANSDPEMGNPKASLTVVEFFDYNCGYCKRAHPLVKQLMAEDKDIRYIYKQFPILSESSYFAARAALAVQLGQPDKYQAFHEKLYTHQGPLSDEAQVKQLALAAGVDWSKVEAKIKDGSIDQNLGTNRALAEALGISGTPAFIIGDQILRGAPRDLASLKGFIKDVRAGKSIQ
>NZ_CP023817.1|WP_098971990.1|4261944_4262847_+|sulfite-exporter-TauE/SafE-family-protein
MLVDILRIIFIAGGLAFVFMLVQACWQKKCNGTLEATPFWPVALIGGVANFLDTLGVGSFAVKTACYKQFKLIDDRVLPGTLNGQCVLPTVTQSLIFVGAVAVDPLTLISMMIAAAAGAAWGARHVASFDRQTIRLVMAISLLVVAGLIFAGLLGLFPVGGDAMGLSGYKLAIALLGNFIFGVLMNVGIGLFAPCMTLVYLLGMNPLAAFPIMMGSTAVLSVFSAGTFIRKGAFDAKAVLAVAIFGPIGVVLAAMLVKSMDMEMLKWLVAFIVIYTSWTMYASWRAARRSPVQLAVESAG
>NZ_CP023817.1|WP_098971992.1|4262761_4263577_-|hypothetical-protein
MAEMSPIDVLRRYQEYQEELTPLLQGLLSAPLASLKRYPFVVSIDRYQGPLCIQPAVPAAHNRLHLIVQGQGREITVCLNQLIGWLMGDRERRRAMPWFKAVYVVLSMALFLIVATLIWHGLEQLYQLLCGEQQNQLGAFSAIIFLTLALAVFDLGKTILEEEVLLHKDIFRHSAIRRTITRFIAAILIAVSIEGLLLLFKGSLGQSELLWPAVGVMGCAVGLLLALGLYVFLGAKAEAALVQASLRSPPPVAQGSDALPARKRTWSRRYR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023817_6	6.2\|3004778\|32\|NZ_CP023817\|PILER-CR	3004778-3004809	32	NZ_CP023817.1	3005035-3005066	0	1.0
NZ_CP023817_6	6.3\|3004867\|32\|NZ_CP023817\|PILER-CR	3004867-3004898	32	NZ_CP023817.1	3005035-3005066	1	0.969

1. spacer 6.2|3004778|32|NZ_CP023817|PILER-CR matches to position: 3005035-3005066, mismatch: 0, identity: 1.0

gtgacttcaccccatttgaatcaaaccggccc	CRISPR spacer
gtgacttcaccccatttgaatcaaaccggccc	Protospacer
********************************

2. spacer 6.3|3004867|32|NZ_CP023817|PILER-CR matches to position: 3005035-3005066, mismatch: 1, identity: 0.969

gtgacttcacctcatttgaatcaaaccggccc	CRISPR spacer
gtgacttcaccccatttgaatcaaaccggccc	Protospacer
***********.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

212969 : 271689

Vibrio_phage(30.77%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098968675.1\|212969_213932_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_098968676.1\|213968_215318_-	GGDEF domain-containing protein	A9J564	Pseudomonas_phage	2.8e-11	35.8
WP_098968677.1\|215808_218430_+	glycoside hydrolase	B0FDP2	Orgyia_leucostigma_nucleopolyhedrovirus	1.3e-198	60.0
WP_172953932.1\|218508_220440_+	chitinase	NA	NA	NA	NA
WP_042021689.1\|221911_222259_+	HNH nuclease family protein	NA	NA	NA	NA
WP_098968681.1\|222419_223130_+	two-component system response regulator RstA	W8CYM9	Bacillus_phage	2.9e-28	31.4
WP_098968682.1\|223151_224477_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	1.1e-17	24.8
WP_042021685.1\|224531_224714_+	hypothetical protein	NA	NA	NA	NA
WP_098968684.1\|224865_227415_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_172953933.1\|227426_228131_+	virulence factor	NA	NA	NA	NA
WP_098968685.1\|228208_228589_-	diacylglycerol kinase	NA	NA	NA	NA
WP_098968686.1\|228740_230369_-	MCR-3-related phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_098968687.1\|231286_232448_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.6e-79	49.7
WP_098968688.1\|232567_233116_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_059112990.1\|238072_238480_+	H-NS histone family protein	NA	NA	NA	NA
WP_157774502.1\|238620_238920_+	hypothetical protein	NA	NA	NA	NA
WP_157774503.1\|239353_239776_+	hypothetical protein	NA	NA	NA	NA
WP_157774504.1\|239865_241131_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_098968691.1\|241153_241882_+	hypothetical protein	NA	NA	NA	NA
WP_098968692.1\|241924_242644_-	hypothetical protein	NA	NA	NA	NA
WP_098968693.1\|242914_243214_-	hypothetical protein	A0A1B0UY37	Roseobacter_phage	1.0e-14	43.6
WP_098968694.1\|243210_243996_-	hypothetical protein	A0A126HHA0	Vibrio_phage	5.2e-18	33.1
WP_098968695.1\|244126_244612_-	hypothetical protein	NA	NA	NA	NA
WP_098968696.1\|244738_245173_-	hypothetical protein	NA	NA	NA	NA
WP_098968697.1\|245315_246587_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.6e-128	54.7
WP_098968698.1\|246590_247013_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-34	55.1
WP_098968699.1\|247145_247373_+	antitoxin	NA	NA	NA	NA
WP_098972375.1\|248290_249541_+	ATPase	A0A1E1GE69	Vibrio_phage	5.3e-17	28.7
WP_098968701.1\|250318_251236_-\|transposase	IS5-like element ISAs4 family transposase	A0A1V0E8E1	Vibrio_phage	2.6e-93	55.8
WP_098968702.1\|251280_252357_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_172953934.1\|255803_256922_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_098968705.1\|260616_261369_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_098968707.1\|262699_263167_-	hypothetical protein	NA	NA	NA	NA
WP_098968708.1\|263154_264057_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_098968709.1\|264508_265426_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.8e-92	56.1
WP_172954081.1\|266863_267097_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_157774505.1\|267981_268548_+	hypothetical protein	NA	NA	NA	NA
WP_098968711.1\|268780_269641_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_157774506.1\|269751_270444_+	hypothetical protein	NA	NA	NA	NA
WP_098968712.1\|270771_271689_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	8.2e-92	55.1

DBSCAN-SWA_2

1231376 : 1242637

Yellowstone_lake_phycodnavirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098969261.1\|1231376_1233797_+	DNA polymerase II	A0A0P0YN24	Yellowstone_lake_phycodnavirus	1.5e-31	25.5
WP_042024004.1\|1233871_1234123_+	DinI family protein	NA	NA	NA	NA
WP_042024001.1\|1234960_1235815_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-27	31.7
WP_042023999.1\|1235932_1236151_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.7e-17	61.8
WP_042023997.1\|1236380_1236698_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	6.2e-15	49.4
WP_042023996.1\|1236757_1239013_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.5e-168	43.1
WP_005300033.1\|1239082_1239301_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_098969262.1\|1239369_1240086_-	arginyltransferase	NA	NA	NA	NA
WP_098969263.1\|1240082_1240790_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_005337104.1\|1240809_1241280_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_098969264.1\|1241389_1242637_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.5e-15	30.7

DBSCAN-SWA_3

1663229 : 1778569

Shigella_phage(21.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098969494.1\|1663229_1664449_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-17	29.2
WP_098969495.1\|1665177_1665948_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.9e-82	61.3
WP_098969496.1\|1665944_1666766_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-50	47.5
WP_098969497.1\|1668001_1669429_+	exodeoxyribonuclease I	NA	NA	NA	NA
WP_005333277.1\|1669584_1670085_+	hypothetical protein	NA	NA	NA	NA
WP_098969498.1\|1670163_1671873_-	alpha-galactosidase	NA	NA	NA	NA
WP_098969499.1\|1672048_1672405_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_098969500.1\|1672401_1673088_+	LrgB family protein	NA	NA	NA	NA
WP_098969501.1\|1673284_1674169_+	cytidine deaminase	NA	NA	NA	NA
WP_098969502.1\|1674304_1675690_-	tryptophanase	NA	NA	NA	NA
WP_082186846.1\|1676120_1676285_+	DUF2256 domain-containing protein	NA	NA	NA	NA
WP_098969503.1\|1676284_1677805_+	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	5.8e-50	33.0
WP_098972523.1\|1677986_1688150_-	type I secretion C-terminal target domain-containing protein	NA	NA	NA	NA
WP_098972525.1\|1694085_1695528_+	ammonia-forming nitrite reductase cytochrome c552 subunit	NA	NA	NA	NA
WP_098969504.1\|1695579_1696173_+	cytochrome c nitrite reductase pentaheme subunit	NA	NA	NA	NA
WP_098969505.1\|1696169_1696862_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_172953979.1\|1696949_1697903_+	cytochrome c nitrite reductase subunit NrfD	NA	NA	NA	NA
WP_098969507.1\|1698077_1700033_+	heme lyase NrfEFG subunit NrfE	NA	NA	NA	NA
WP_098969508.1\|1700029_1700620_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_098969509.1\|1700616_1701822_+	heme lyase NrfEFG subunit NrfF	NA	NA	NA	NA
WP_098969510.1\|1701913_1702543_+	hypothetical protein	NA	NA	NA	NA
WP_098969511.1\|1702597_1703050_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_042023742.1\|1703788_1704067_-	YcgL domain-containing protein	NA	NA	NA	NA
WP_098969512.1\|1704174_1704888_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_042023745.1\|1704906_1705719_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_042023747.1\|1705721_1705988_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_172953980.1\|1706183_1706510_+	YciU family protein	NA	NA	NA	NA
WP_172953981.1\|1706494_1707286_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_098969513.1\|1707552_1707876_+	DUF440 family protein	NA	NA	NA	NA
WP_098969514.1\|1707923_1708235_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_098972530.1\|1708236_1709133_-	nucleotide-binding protein	NA	NA	NA	NA
WP_098969515.1\|1709347_1710562_+	UPF0149 family protein	NA	NA	NA	NA
WP_042023762.1\|1710732_1711197_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042023764.1\|1711199_1711388_+	DUF4250 domain-containing protein	NA	NA	NA	NA
WP_098969517.1\|1711554_1711734_+	hypothetical protein	NA	NA	NA	NA
WP_042023770.1\|1711903_1712491_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_172953982.1\|1712716_1713607_+	DMT family transporter	NA	NA	NA	NA
WP_098969520.1\|1713704_1714883_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_098969521.1\|1715010_1715670_+	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_042023780.1\|1715942_1716146_+	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA
WP_098969522.1\|1716297_1716915_-	riboflavin synthase subunit alpha	NA	NA	NA	NA
WP_042023783.1\|1717047_1717254_+	YaeP family protein	NA	NA	NA	NA
WP_098969523.1\|1717402_1718782_+	MATE family efflux transporter	NA	NA	NA	NA
WP_098969525.1\|1722432_1723594_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.4e-80	49.3
WP_098969526.1\|1723620_1727658_-	response regulator	A0A1V0SGX0	Hokovirus	4.2e-47	46.2
WP_098969527.1\|1727654_1728770_-	response regulator	W8CYM9	Bacillus_phage	2.1e-12	36.6
WP_098969528.1\|1729154_1730768_+	response regulator	W8CYM9	Bacillus_phage	1.1e-09	37.2
WP_098969529.1\|1731012_1733943_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_098969530.1\|1734034_1760521_-	tandem-95 repeat protein	NA	NA	NA	NA
WP_098969531.1\|1760558_1761899_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_098969532.1\|1761918_1764087_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	1.3e-10	28.3
WP_098969533.1\|1764083_1765688_-	hypothetical protein	W8CYL7	Bacillus_phage	4.2e-06	22.2
WP_098969535.1\|1766204_1767419_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.3e-47	48.4
WP_098969536.1\|1768487_1769348_+	DNA adenine methylase	A0A2H4IYF4	uncultured_Caudovirales_phage	1.9e-05	26.6
WP_082029965.1\|1769368_1770769_-	hypothetical protein	NA	NA	NA	NA
WP_098969537.1\|1770775_1772959_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_098968687.1\|1774011_1775173_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.6e-79	49.7
WP_098969538.1\|1775740_1776757_-	AAA family ATPase	A0A2P1CFH0	Microbacterium_phage	2.6e-06	23.9
WP_098969540.1\|1777606_1778569_+\|transposase	IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2066155 : 2073729

Mycoplasma_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098969696.1\|2066155_2067439_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	6.0e-32	40.3
WP_098969697.1\|2067435_2068740_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	2.2e-34	42.3
WP_042019013.1\|2068900_2069239_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_098969698.1\|2069240_2071088_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.2e-103	41.4
WP_098969699.1\|2071116_2071635_-	co-chaperone HscB	NA	NA	NA	NA
WP_042019010.1\|2071749_2072073_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	7.0e-22	44.9
WP_040094674.1\|2072088_2072472_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.3e-54	79.0
WP_098969700.1\|2072514_2073729_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.1e-33	31.6

DBSCAN-SWA_5

4193891 : 4204473

Phage_NCTB(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068978683.1\|4193891_4194713_+	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	6.0e-09	24.5
WP_098971894.1\|4194841_4195339_+	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	1.4e-05	27.1
WP_005342935.1\|4195499_4195676_-	hypothetical protein	NA	NA	NA	NA
WP_098971896.1\|4196155_4197433_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	3.7e-42	40.2
WP_098971898.1\|4197615_4201332_+	methionine synthase	A0A140XBC7	Dickeya_phage	1.3e-21	80.3
WP_042024591.1\|4201571_4202468_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	1.2e-39	34.3
WP_098971900.1\|4202563_4203808_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_019446511.1\|4203804_4204473_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.7e-27	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023817

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection