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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023964 Yersinia frederiksenii strain FDAARGOS_418 chromosome, complete genome 4 crisprs csa3,DEDDh,cas3,RT,DinG,WYL 2 3 5 0

Results visualization

1. NZ_CP023964
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023964_1 1121023-1121339 Unclear NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023964_2 1674920-1675034 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023964_3 2013051-2013582 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023964_4 2017208-2017350 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP023964_1 1.4|1121226|22|NZ_CP023964|CRT 1121226-1121247 22 NZ_CP023964.1 2073838-2073859 0 1.0
NZ_CP023964_1 1.5|1121283|22|NZ_CP023964|CRT 1121283-1121304 22 NZ_CP023964.1 2073781-2073802 0 1.0

1. spacer 1.4|1121226|22|NZ_CP023964|CRT matches to position: 2073838-2073859, mismatch: 0, identity: 1.0

gatggttctcagtctgtcgagg	CRISPR spacer
gatggttctcagtctgtcgagg	Protospacer
**********************

2. spacer 1.5|1121283|22|NZ_CP023964|CRT matches to position: 2073781-2073802, mismatch: 0, identity: 1.0

tatggccggcaaggtgtctaca	CRISPR spacer
tatggccggcaaggtgtctaca	Protospacer
**********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023964_3 3.9|2013529|26|NZ_CP023964|CRISPRCasFinder 2013529-2013554 26 NZ_CP022517 Pantoea vagans strain FBS135 plasmid pPant1, complete sequence 273959-273984 3 0.885
NZ_CP023964_3 3.5|2013307|26|NZ_CP023964|CRISPRCasFinder 2013307-2013332 26 NZ_CP048417 Citrobacter freundii strain CitB plasmid pA_CitB, complete sequence 27901-27926 4 0.846
NZ_CP023964_3 3.5|2013307|26|NZ_CP023964|CRISPRCasFinder 2013307-2013332 26 CP053410 Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence 103622-103647 4 0.846
NZ_CP023964_3 3.9|2013529|26|NZ_CP023964|CRISPRCasFinder 2013529-2013554 26 NC_017643 Escherichia coli UMNK88 plasmid pUMNK88_Hly, complete sequence 7523-7548 6 0.769
NZ_CP023964_3 3.4|2013250|29|NZ_CP023964|CRISPRCasFinder 2013250-2013278 29 MH638312 Bacillus phage Kioshi, complete genome 137012-137040 7 0.759
NZ_CP023964_3 3.4|2013250|29|NZ_CP023964|CRISPRCasFinder 2013250-2013278 29 KJ451625 Bacillus phage Bcp1, complete genome 140381-140409 7 0.759

1. spacer 3.9|2013529|26|NZ_CP023964|CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 3, identity: 0.885

ttatgatgatgggcgtcagcaggtct	CRISPR spacer
atatgatgatggccgtcagcaggcct	Protospacer
 *********** **********.**

2. spacer 3.5|2013307|26|NZ_CP023964|CRISPRCasFinder matches to NZ_CP048417 (Citrobacter freundii strain CitB plasmid pA_CitB, complete sequence) position: , mismatch: 4, identity: 0.846

taactatggttatcagcatgtccaca	CRISPR spacer
cgactatggttagaagcatgtccaca	Protospacer
..**********  ************

3. spacer 3.5|2013307|26|NZ_CP023964|CRISPRCasFinder matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

taactatggttatcagcatgtccaca	CRISPR spacer
cgactatggttaggagcatgtccaca	Protospacer
..**********  ************

4. spacer 3.9|2013529|26|NZ_CP023964|CRISPRCasFinder matches to NC_017643 (Escherichia coli UMNK88 plasmid pUMNK88_Hly, complete sequence) position: , mismatch: 6, identity: 0.769

ttatgatgatgggcgtcagcaggtct	CRISPR spacer
gagtgatgacgggcgtcagcaggtgc	Protospacer
  .******.************** .

5. spacer 3.4|2013250|29|NZ_CP023964|CRISPRCasFinder matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 7, identity: 0.759

taatgactatgggttgcagtctatcttta	CRISPR spacer
taatgactatccgttgcagtctaatctcg	Protospacer
**********  *********** ..*..

6. spacer 3.4|2013250|29|NZ_CP023964|CRISPRCasFinder matches to KJ451625 (Bacillus phage Bcp1, complete genome) position: , mismatch: 7, identity: 0.759

taatgactatgggttgcagtctatcttta	CRISPR spacer
taatgactatccgttgcagtctaatctcg	Protospacer
**********  *********** ..*..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1365886 : 1374152 10 Escherichia_phage(71.43%) NA NA
DBSCAN-SWA_2 1547156 : 1589021 37 Pseudomonas_phage(21.05%) protease,tail,plate NA
DBSCAN-SWA_3 1944534 : 1985563 58 Pectobacterium_phage(69.05%) tail,integrase,plate,tRNA,terminase,head attL 1944431:1944458|attR 1992978:1993005
DBSCAN-SWA_4 2798410 : 2920569 155 Salmonella_phage(24.77%) tail,capsid,integrase,plate,lysis,portal,terminase,holin,head attL 2884437:2884487|attR 2920719:2920769
DBSCAN-SWA_5 3002110 : 3014435 8 Paramecium_bursaria_Chlorella_virus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage