CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP021375	Rhizobium sp. ACO-34A plasmid pRACO34Aa, complete sequence	0 crisprs	NA	0
NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	0 crisprs	NA	0
NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	0 crisprs	NA	0
NZ_CP021374	Rhizobium sp. ACO-34A plasmid pRACO34Ab, complete sequence	0 crisprs	NA	0
NZ_CP021371	Rhizobium sp. ACO-34A chromosome, complete genome	2 crisprs	csa3,cas3,WYL,DEDDh	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021371_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021371_1

2737763-2737886

Orphan

Consensus_repeat	Method
GTCCTTGTCGAGCAGCTTGTTCTTGCCGATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021371_1

>merge|NZ_CP021371|1|2737763-2737886|CRISPRCasFinder
GTCCTTGTCGAGCAGCTTGTTCTTGCCGATCCCGCGACGCCAAAGGCGCGCATCAAAAGATGGCCGGGACCGGCAAGCCGCAATTAGTTGCGGTCCTTGTCGACCAGCTTGTTCTTGCCGATCC

>NZ_CP021371|1|1|2737763-2737886|CRISPRCasFinder
GTCCTTGTCGAGCAGCTTGTTCTTGCCGATCC	CGCGACGCCAAAGGCGCGCATCAAAAGATGGCCGGGACCGGCAAGCCGCAATTAGTTGCG
GTCCTTGTCGACCAGCTTGTTCTTGCCGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021371.1\|WP_099058190.1\|2725414_2726332_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP021371.1\|WP_099058193.1\|2728405_2729395_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP021371.1\|WP_099058204.1\|2741665_2742595_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366181
NZ_CP021371.1\|WP_099058192.1\|2727148_2728258_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197318
NZ_CP021371.1\|WP_099058208.1\|2745231_2746251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021371.1\|WP_099058202.1\|2740267_2740732_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP021371.1\|WP_099058201.1\|2739826_2740219_+\|DUF4087-domain-containing-protein	unknown	unknown	gnl\|CDD\|372559
NZ_CP021371.1\|WP_099058196.1\|2732183_2733164_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
NZ_CP021371.1\|WP_099058199.1\|2736887_2737637_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373092
NZ_CP021371.1\|WP_099058191.1\|2726411_2727152_-\|DNA-mismatch-repair-protein-MutT	unknown	unknown	unknown
NZ_CP021371.1\|WP_099058195.1\|2730477_2732172_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP021371.1\|WP_099058198.1\|2735412_2736636_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP021371.1\|WP_099058205.1\|2742604_2743012_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP021371.1\|WP_099058207.1\|2744149_2744902_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|223923
NZ_CP021371.1\|WP_099058197.1\|2733454_2735356_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368811
NZ_CP021371.1\|WP_099060057.1\|2738937_2739576_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP021371.1\|WP_099058194.1\|2729461_2730490_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NZ_CP021371.1\|WP_099058203.1\|2740892_2741585_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NZ_CP021371.1\|WP_099058206.1\|2743152_2744037_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578
NZ_CP021371.1\|WP_099058209.1\|2746582_2747272_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223860

Protein	Function_ID	Function_description	E-value
NZ_CP021371.1\|WP_099058190.1\|2725414_2726332_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.90907e-102
NZ_CP021371.1\|WP_099058193.1\|2728405_2729395_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	2.27951e-75
NZ_CP021371.1\|WP_099058204.1\|2741665_2742595_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.65956e-11
NZ_CP021371.1\|WP_099058192.1\|2727148_2728258_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	6.52791e-06
NZ_CP021371.1\|WP_099058202.1\|2740267_2740732_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.67548e-37
NZ_CP021371.1\|WP_099058201.1\|2739826_2740219_+\|DUF4087-domain-containing-protein	gnl\|CDD\|372559	pfam13316, DUF4087, Protein of unknown function (DUF4087). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 140 and 280 amino acids in length. There is a conserved RCGW sequence motif.	8.27745e-33
NZ_CP021371.1\|WP_099058196.1\|2732183_2733164_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.82048e-107
NZ_CP021371.1\|WP_099058199.1\|2736887_2737637_+\|hypothetical-protein	gnl\|CDD\|373092	pfam14485, DUF4431, Domain of unknown function (DUF4431).	0.00133198
NZ_CP021371.1\|WP_099058195.1\|2730477_2732172_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.39928e-94
NZ_CP021371.1\|WP_099058198.1\|2735412_2736636_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.289e-130
NZ_CP021371.1\|WP_099058205.1\|2742604_2743012_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.10466e-44
NZ_CP021371.1\|WP_099058207.1\|2744149_2744902_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|223923	COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism].	3.01618e-119
NZ_CP021371.1\|WP_099058197.1\|2733454_2735356_+\|hypothetical-protein	gnl\|CDD\|368811	pfam06241, Castor_Poll_mid, Castor and Pollux, part of voltage-gated ion channel. This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.	2.53623e-22
NZ_CP021371.1\|WP_099060057.1\|2738937_2739576_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	3.12634e-09
NZ_CP021371.1\|WP_099058194.1\|2729461_2730490_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	2.06642e-125
NZ_CP021371.1\|WP_099058203.1\|2740892_2741585_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	1.7524e-110
NZ_CP021371.1\|WP_099058206.1\|2743152_2744037_+\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.31107e-95
NZ_CP021371.1\|WP_099058209.1\|2746582_2747272_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|223860	COG0789, SoxR, Predicted transcriptional regulators [Transcription].	3.34933e-16

>NZ_CP021371.1|WP_099058199.1|2736887_2737637_+|hypothetical-protein
MRKRLSVFILMAASLLPAPAFAGCFDLAKGQPSSLSGVLTHHIFPGPPNFEDVQKGDTPEPGYILKLDDNICLTGDTDFADPKTLFDEVQLVPTDETGADMKTLRDSRVHVVLKDPMPAMTGHHHRPLVAWVTAIEPQGDPTKNYGTAATTVEAFYKALETGDGMLAARFIIPEKTEKGLLSPGSLSRFYGNLDEPLELHDVHALADDRFLVRYRFRDGERICDGRATVTTTRRDGRAFIKSIRADSGC
>NZ_CP021371.1|WP_099058198.1|2735412_2736636_-|PLP-dependent-aminotransferase-family-protein
MLNWDHIFATRSSRMRASEIRELLKLLERPDIISFAGGIPDPALFPDEAFKAAYADILSGPEAAAALQYSVSEGYKPLREWLKGEMEKLGIACTVDNIFITSGSQQALDYLGKLFLSPKDTALVNWPTYLGALQAFNAYEPNYDQLTFGNRTPESYRTAAENFGGEVKFAYLSADFANPTSETVDLDGRCRLLKLADELDIAIIEDAAYQSLRYDGEAIPPILALEIADKGSIENTRTIYSGSFSKTLAPGLRVGFVVAAMPVIRKLVLMKQAADLHSSTINQMAIAHVATRHFDQQVTKIRAVYSERRNAMLAALEKYMPAGTVWTRPEGGMFVWVTLPEGLDGGELLARSVETEKVAFVPGQAFFADRSGANTLRLSFSCANEEMIDEGIKRLGRLVSGALALAA
>NZ_CP021371.1|WP_099058197.1|2733454_2735356_+|hypothetical-protein
MKTRSHWRARLRYEFDKSMAGGAIALIGWLALISLVVIILAGIFLAISGIAPEGGEPVGFLEGVWESLMRTMDAGTMGGDMGWGFRMVSLVVTVIGIFVFSALIGVISSGLEDKLSELRKGRSRVLETDHTIILNWSPSIFDVINELVIANQSRRKPRIVIMADKDKVEMEDEIATKVEDLKNTRIICRSGDPTDLYDLDIVNAQTSRSIIVLSPEGEDADSRVVKSVLALVNDPKRRIEPYKIAAEIRDGRNAEVARIVGGRELQLVLADDLISRIVVHTSRQSGLSSVYSELLDFDGCEIYTLEQPELTGKPFGAAVMSYENCSLIGVCDASGAVLLNPPPARVFEQGDRAIIIAEDDASIRTWNGNLEIAKETIRPIARRERQPERTLVLGWNRRGPIIASELARYVAPGSHLTIAANSAAFDRDVGNLDIDPTVMTVECRVVDTSDRTSLDALAIPSFDHVLVLGYSDDLSAQGADTRTLITLLQLRRIAERSGKRVSVVSEMIDIRNRQLAEVTRADDFVVSNKLVSLMLAQASENEFMAAIFNELLDEKGSEIYMRPVTDYVSINQQVNFFTISLAALRRGEIAIGYRRQREDDTDARNLGGVTVNPLKSERITYSARDMVIVLAAD
>NZ_CP021371.1|WP_099058196.1|2732183_2733164_-|ABC-transporter-substrate-binding-protein
MKTLLSAFTALAAFGFMTVSADAANLVLYTSQPNEDAQATVDGFMAANPDVKVDWVRDGTPKIMAKLMAEIEAGNPVADVLLIADTVTLERMKQNGQLLAYKSPEAANYDATLYDADGFYYSTKLITTGIMYNTAASMKPTSWKDLAKPEAKGLVTMPSPLTSGAALIHAQTLAGVSSLGWDYYKELQANGAIAAGGNGGVLKSVASGEKAYGVVVDYMPIREKAKGAPVEFVFPEEGVSAVTEPVGILASSKNAEAAKKFVDYVLSEKGQEGFLKLGYIPARNGMAVPEGFPARDTIKVLPIDAAAALKATDEDLKTFSGIFGTN
>NZ_CP021371.1|WP_099058195.1|2730477_2732172_-|iron-ABC-transporter-permease
MPRLSINANSQPRWLFPFVTAVVAGLCVLPLARLVMAGISSILNGKALELLADPAIWTAAWNTLTTSVLGMIAAVAIGGFFALALTLADIRGKWLLSFLFMLPTMIPPQVTALSWVGMTGPSSPLLKALGLAPPLGSPQPLYSIAGIALLYGVQHSPLVFLSLRAGLLALPRDGIEAAKLSGASPWQVLKDIILPLSLPGLIAGAAMAFVSGVGNFGIPAILGIPASIYTLPTLVYARFASFGTSTFGDIAILSGMIAVMAVVGLQVQEWALKGRDYRVIGLSGASATFRLGALRLPVELLLWLLLFAILIAPFIALVSASLVPAYGVALSFKTASFAAYEEILFRQKVTRTAFANSIFLASATAFGLLVIGVLTGYALTRGGKRLSAALSAMIEIPYALPGIVISVAFILVFAAPLPLLGVTIYGTIWIILAAYFSSFFAVGLKPVVSALRQLDPALEEAARLSGAGFWRRLTDIIVPLIAPAAGASVILVFLIACNELTVSALLWSAGTQTLGVAIYNLDDSGSYDLASALSVLVVAMVVVLMLLLELMAARLPKGVVPWRN
>NZ_CP021371.1|WP_099058194.1|2729461_2730490_-|ABC-transporter-ATP-binding-protein
MAKLTLHKLCKDYGTGKPAVNDVSLEIRDGGFLALLGPSGCGKTTVLRMIAGFEAPSDGSILLGDRVLSDASGAVPPERRNMAMVFQSYALWPHMTVAANVGYPLKVRGISGERYREKVGEALKAVRLEQYAERRPADLSGGQRQRVALARSLVTDPDVVLLDEPLANLDRHLRQEMEETFREFHVRSGATMVYVTHDQAEAMALATDVAVMSEGRLLQVAPPAEIYARPEGRLVGSLIGQGAILSLPLAGEDPRALDWSMLAGAFEREADSRPVAEVLVRPQDVIVGGEGVAATVAGVLYEGERYALRLTLVDGQSLRAYSRQPARVGEVLRVTLQAGWRL
>NZ_CP021371.1|WP_099058193.1|2728405_2729395_-|isopenicillin-N-synthase-family-oxygenase
MADFPIFDLGAFERATPEEKKRLGETVDEICRKTGFLAIAEHSVPKDVIEGVWQSARTFFDLSPEEKNAARAPFPGYPYGYLGPGTEALAKSKNVDTPPDLKESFNGGPLAVPAGMTDSEALSFCYAQTIWPAGPEGFADAWKAYYRAMEDLARRIMRVFAVALKLPEDFFEDFIDQPISALRALNYPAQTVAPQPGQLRAGAHTDYGSLTILLPEPGSRGLEILSPEGDWVSVPPVPGAFVINIGDLMSLWTNDLWVSTLHRVVNPPPEEGGLDRRQSLAFFHQPNWFAEIRCLDTCLSPGDEPRYQPVLSGPYLMGKFKATVTAKAS
>NZ_CP021371.1|WP_099058192.1|2727148_2728258_-|endonuclease/exonuclease/phosphatase-family-protein
MALRLSTFNIENLITRFDFTGFRNQLRQDRVLKLFEMRNEQDYQRLEAARVVASTDDTRQLSALAIADADADILCLQEVDNMAALQNFEYGYLFRMMGAGYRHKYLVEGNDSRGIDVGVMMREQTRDGETISVSDIKSHAALTYADLGLFTPALANYAKPDDRIFKRDCLELDLVVGGRPFTLYVVHFKSMTNGRDGMDGRTSTMPVREAETKAVRHIIEQRFGKGQTADKNFAICGDMNDYQERVDVIGDRRTGYRFEYRDTRPSALDVFSADGFAENVMLRREPLDRWTLYHARGPAEQHLCQLDYIWLSPALAAANPGRSPDIIRAGQPFRTVFPPGQDVERYPRIGWDRPKASDHCPIVISLDIP
>NZ_CP021371.1|WP_099058191.1|2726411_2727152_-|DNA-mismatch-repair-protein-MutT
MNDLTFRDQTGLPDDGRVFPVKDISLRVLEGEHPFHRVEREAAEENWEREVAANPALFNGDLVFQNRLTFREGVLEGEAFVVPYSTFMWWRRQPQGQGGYHTFCFPVIISSDNALIAVKMGAHTANAGQVYFAAGSLDRSDIVDGRCDLTGNMRREVREETGLDLDEATPEGGFFGSYRNRRLTILQRYRFDRPAEELLERIAAHMLVDEEKEIAGAVAIRSPDPGAHPYNAAMPPVLEWFFTGKS
>NZ_CP021371.1|WP_099058190.1|2725414_2726332_-|PhzF-family-phenazine-biosynthesis-protein
MARPYSIYDVFTNRKLAGNPLAVVFEADDLTDDAMQEIAAEMNLSETVFVMKASNGSHSARVRIFTPARELPFAGHPTVGTAIALAERAYVDASGNLDLVSVLEENVGPVRCAVRLREGEASFAEFDLPKTSMNYELALDRQGISDALSLKITDLGFENHVPSIWSAGVPFLLVPVHNLSAVERIDFDPQLWERTAPLCEGGLTSAYVYCRGGVHHGAKFHARMFSPDMGISEDPATGSAVAALSGAIRHFDALPDGHHPMMVEQGVEMGRPSYIHLHIDAKDGEISRARIGGQAVRFATGVLDI
>NZ_CP021371.1|WP_099060057.1|2738937_2739576_-|TetR/AcrR-family-transcriptional-regulator
MQTETANAEFTPRQSAVLAEALRLLVEGGDKALTTAGLARAANCSKESLYKWFGDRDGLLSAMISYQASKVRTVERPGERLSAASLKEHLDVFSHDLLDVLAGDVSLALNRLAIGQSSRDGSKLGTLLLERGRRQIDRRARALLDAGQRDGLLRFSDGEEAYRTFYGLIVSDLHVRMLLGEAPNTKNFAARAEKAVHAFLTLYGTEKALAGP
>NZ_CP021371.1|WP_099058201.1|2739826_2740219_+|DUF4087-domain-containing-protein
MSLRVAALFLASAALLAASPSAAAPENRCGWIQNPTPGNNWLDDRDGTWIITTQGMDDEPLGMENFPDISTGDYVAVNGNYGYTCGCVKAETEKNTDPDFSAKGKITAIYGVKLLPLKTCLADRNLTKPE
>NZ_CP021371.1|WP_099058202.1|2740267_2740732_-|Lrp/AsnC-family-transcriptional-regulator
MLDDRDRKILDALQRDASVPLADLAELVSLSASACSRRIQRLEDAGYIQKRIAVLDREKIGVPTTVFALVKTAHHSDDWIETFRGSIADIAEIVEAHRLTGSYDYLLKIVLPQVEHYDVVYRRLVKRIELFDVSAFISMETLKSGQAVPVSYAV
>NZ_CP021371.1|WP_099058203.1|2740892_2741585_+|aspartate/glutamate-racemase-family-protein
MKRVGLIGGMSFESSAVYYRLINEMVRDRVGGLASADLLMHSVNFSEIVGYQKAGRWDLAEKHLSDVAGGLQAAGADCVLICTNTMHLVANGVSQSVDIPLINIIDVTAKAITEKGYRRPLLLATRYTMEHGFYTDRMRTHGLDPLVPDEDDRISAHSIIFDELCAGQVKDTSRDAMNAMIEKAKQAGADSVILGCTEICLLLDPQNLPLPGFDSTELHASAAADFALAA
>NZ_CP021371.1|WP_099058204.1|2741665_2742595_+|MarR-family-transcriptional-regulator
MLDKRDLATIEAMRAFNRFYTDRIGILDRAYLKADYTLAEARVVYELGARGQASATDLVRDLHLDPAYLSRILKAFRSAEIIEQTRDPEDGRSQIISLTAKGMAEYEALGELSRNQLAQMLEPLGPSERDTLVDGMAAITRLLDGERRNIVPPILRPHRPGDLGWIIQSQSEFYVREFGWNDKFEALVSEVSARFLSGFNPSRDHCWIAERHGVRIGSALVMDGGHDIAKLRLLYVDEAARGLGLGRLLVDQCIDFARRAGYRQITLWTNDILHAARHIYVTAGFRLVSEERHTLFGPELNGQTWTLDF
>NZ_CP021371.1|WP_099058205.1|2742604_2743012_-|helix-turn-helix-transcriptional-regulator
MTVAITGFEAKIAAYKGNDTASLADCPVRSVIDHIGGKWSSLLLLLLWERPYRFGELRRLVPDISQRMLTQTLRELQRDGYVQRTVFPTKPPSVEYCLTELGKSLFKALSHLLEWAEENFLAVREARQRFDAEGV
>NZ_CP021371.1|WP_099058206.1|2743152_2744037_+|SDR-family-oxidoreductase
MSKILVTGASGKLGGLVIENLIAKQGVAPADIVAGTRDPSKLSALVAKGVEARKVDFDDPASLEAAFKGIDRLLIVSTDELATPGKRLVQHKAAVEAAKKAGVGRLFYTSLPNPDISKVTFAPDHFGTEEAIKATGLPYTFFRNSWYMENLFMALPAALGTGQWYTSSGQGKIGHISRADIAKAIAGALAKPVSENAIYTLTGEKTYTTDEIAALVREVTGRPLAVVHVTDEQLAAGMAGAGVPAPFIPTFVSFDTNTREGLFDITNDEAAKLSGEKLVSLKDFLIANKATLGA
>NZ_CP021371.1|WP_099058207.1|2744149_2744902_-|pyridoxine-5'-phosphate-synthase
MPAKLSVNLNAIAMLRNRRDLPWPDVARFGRLALEAGASGLTVHPRPDQRHIRFSDLPVLRALIDDDFPHAEFNIEGYPTEDFLALCERTEPEQVTLVPDDPSQATSDHGWDFRKHKTFLTETVARLKSKGMRVSLFADGDGDAEAVAVARETGADRIELYTGPYGGCFDNPEKAAREIDLLGRTADAALACGLAVNGGHDLTVANLPALVKRIPMLAEVSIGHGLTADALEYGMAETVRRFRRACGQTV
>NZ_CP021371.1|WP_099058208.1|2745231_2746251_+|hypothetical-protein
MSEVRRIDSDRVKLSLQAILDSQTFSRSERLRAFLKFVVEMEQLGLAHQLKGYTIGVDVFSRDESFDPGADPLVRVQAGKLRRLLNLYYADEGRNELLRIRIPLGCYVPIYEWAPTESRRFVSENPAANWPEMISLPLMPDTGSRLVEVNPEGQFRLPHITIASSEQPDWRVRTFTNAVCIGGKHLWGIKLDYNDTVDSDEANPLDFILEINADNDTAPLTANLRHRQTGKLVVGYSHSATETASSRQVAAFANQFCVEALTLTGQLYHFCHARSLSSVLMDCLEATYLYKLDNSPNSFMEATRHQRRLVHPYPLTHFISELSGLMALTADTSQISRQV
>NZ_CP021371.1|WP_099058209.1|2746582_2747272_+|MerR-family-transcriptional-regulator
MAEGLHHRKSAGDTRAGATSETIYLPAVELPAQLPEEPIAIAEMATLFGVTHRTLHFYEEKGLIKAGRVGLMRVYGRQDISRMAVITACRDVGMPVAAIQELMEALKKVRSQTKADTLFAEALLARQRELTANLSTTHHQMQQITRLLAQDKDEAQNARVLQAQRIGLTDIERRCLELMAEGYAPLRLARALDMSAGEIGRIEGEIIRKFDASNRFQAVAKAVLLGLVN

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Crispr_ID: NZ_CP021371_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021371_2

3140227-3140330

Orphan

Consensus_repeat	Method
TACCCGATTGGCTCGCCGATTCCAGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP021371_2

>merge|NZ_CP021371|2|3140227-3140330|CRISPRCasFinder
TACCCGATTGGCTCGCCGATTCCAGCAGCAACCTTTATCTCGGAGCCTACTTGCTTATTGAACAAGTCAAGCGGCTGGTACCCGATTGGCTCGCGGATTCCAGC

>NZ_CP021371|2|2|3140227-3140330|CRISPRCasFinder
TACCCGATTGGCTCGCCGATTCCAGC	AGCAACCTTTATCTCGGAGCCTACTTGCTTATTGAACAAGTCAAGCGGCTGG
TACCCGATTGGCTCGCGGATTCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021371.1\|WP_099058516.1\|3131046_3132156_-\|DUF2333-family-protein	unknown	unknown	gnl\|CDD\|227649
NZ_CP021371.1\|WP_099058529.1\|3150350_3150794_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP021371.1\|WP_099058525.1\|3143111_3143429_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP021371.1\|WP_099058523.1\|3141154_3142204_+\|choline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|188317
NZ_CP021371.1\|WP_099058528.1\|3149225_3150203_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP021371.1\|WP_099058522.1\|3139170_3140127_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
NZ_CP021371.1\|WP_099058520.1\|3137871_3138324_-\|pseudoazurin	unknown	unknown	gnl\|CDD\|259880
NZ_CP021371.1\|WP_099058530.1\|3150936_3152631_+\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NZ_CP021371.1\|WP_099058524.1\|3142246_3142996_+\|HugZ-family-protein	unknown	unknown	gnl\|CDD\|223819
NZ_CP021371.1\|WP_099058515.1\|3130512_3130971_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|369881
NZ_CP021371.1\|WP_099060091.1\|3147872_3149039_-\|DUF3095-domain-containing-protein	unknown	unknown	gnl\|CDD\|371453
NZ_CP021371.1\|WP_099058521.1\|3138485_3138872_-\|cytochrome-c-family-protein	unknown	unknown	gnl\|CDD\|226005
NZ_CP021371.1\|WP_099058519.1\|3136630_3137719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021371.1\|WP_099058527.1\|3146653_3147760_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP021371.1\|WP_099058518.1\|3135373_3136522_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021371.1\|WP_099060088.1\|3132148_3133447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021371.1\|WP_099058514.1\|3129739_3130462_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP021371.1\|WP_099060090.1\|3145911_3146436_+\|ClbS/DfsB-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377957
NZ_CP021371.1\|WP_099058526.1\|3143638_3145609_-\|PhoX-family-phosphatase	unknown	unknown	gnl\|CDD\|225752
NZ_CP021371.1\|WP_099058517.1\|3133443_3135369_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803

Protein	Function_ID	Function_description	E-value
NZ_CP021371.1\|WP_099058516.1\|3131046_3132156_-\|DUF2333-family-protein	gnl\|CDD\|227649	COG5345, COG5345, Uncharacterized protein conserved in bacteria [Function unknown].	2.66742e-173
NZ_CP021371.1\|WP_099058529.1\|3150350_3150794_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.60361e-27
NZ_CP021371.1\|WP_099058524.1\|3142246_3142996_+\|HugZ-family-protein	gnl\|CDD\|223819	COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism].	3.11802e-42
NZ_CP021371.1\|WP_099058523.1\|3141154_3142204_+\|choline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|188317	TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021371.1\|WP_099058528.1\|3149225_3150203_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.67239e-43
NZ_CP021371.1\|WP_099058522.1\|3139170_3140127_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP021371.1\|WP_099058520.1\|3137871_3138324_-\|pseudoazurin	gnl\|CDD\|259880	cd04218, Pseudoazurin, Pseudoazurin (Paz) is a type I blue copper electron-transfer protein. Pseudoazurin (PAz) has been identified as an electron donor to the denitrification pathway. For example, PAz acts as an electron donor to cytochrome c peroxidase and N2OR from Paracoccus pantotrophus (Pp), and to the copper containing nitrite reductase (NiR) that catalyzes the second step of denitrification. It has been shown that pseudoazurin dramatically enhances the reaction profile of nitrite reduction by Paracoccus pantotrophus cytochrome cd1 and facilitates release of the product nitric oxide. The ability of this small redox protein to interact with a multitude of structurally different partners has been attributed to the hydrophobic character of the binding surface.	3.78325e-55
NZ_CP021371.1\|WP_099058530.1\|3150936_3152631_+\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NZ_CP021371.1\|WP_099058525.1\|3143111_3143429_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	6.41855e-18
NZ_CP021371.1\|WP_099058515.1\|3130512_3130971_+\|PAS-domain-containing-protein	gnl\|CDD\|369881	pfam08447, PAS_3, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	2.04084e-07
NZ_CP021371.1\|WP_099060091.1\|3147872_3149039_-\|DUF3095-domain-containing-protein	gnl\|CDD\|371453	pfam11294, DUF3095, Protein of unknown function (DUF3095). Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.	1.09113e-172
NZ_CP021371.1\|WP_099058521.1\|3138485_3138872_-\|cytochrome-c-family-protein	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	2.74303e-46
NZ_CP021371.1\|WP_099058517.1\|3133443_3135369_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	6.56542e-07
NZ_CP021371.1\|WP_099058527.1\|3146653_3147760_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	1.12132e-118
NZ_CP021371.1\|WP_099058514.1\|3129739_3130462_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	1.30865e-19
NZ_CP021371.1\|WP_099060090.1\|3145911_3146436_+\|ClbS/DfsB-family-four-helix-bundle-protein	gnl\|CDD\|377957	pfam08020, DUF1706, Protein of unknown function (DUF1706). This family contains many hypothetical proteins from bacteria and yeast.	4.31084e-64
NZ_CP021371.1\|WP_099058526.1\|3143638_3145609_-\|PhoX-family-phosphatase	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	0

>NZ_CP021371.1|WP_099058522.1|3139170_3140127_+|choline-ABC-transporter-substrate-binding-protein
MTKFHSYRLALAAAVSVFAMGLTPAMAAEAESCKAVRFSDVGWTDITATTATATVVLKALGYEPTTTVLSVPVTYQSLKNKDIDVFLGNWMPTQENDVRPFLDDKSVESFGPNLEGAKYTLATNAKGAELGIKDFKDIAAHKDELEGKIYGIEPGNDGNRLILDMIEKDTFGLKGFEVVESSEQGMLAQVARAEKDGTPVIFLGWEPHPMNANYKMSYLTGGDDIFGPNFGGATVFTNIRAGYTTDCANVGKFITNLKFSLPMENEIMGKILNDGKDPEVAATEWLKANGSAVEPWLAGVTTFDGGDAAAAVKSALGL
>NZ_CP021371.1|WP_099058521.1|3138485_3138872_-|cytochrome-c-family-protein
MKLHCLIMAAAMVLPAGLAFADGDPVVGAKVFKQCMACHTATEAKNKVGPTLMGIIGRPVASVADYKYSPAMTTFGQGKVWSEEELAAYLPKPKDLVPGTKMAFAGLKKPDDIANLIAYLKDPAAGGN
>NZ_CP021371.1|WP_099058520.1|3137871_3138324_-|pseudoazurin
MQNRIIRFVGAAAVAGLFAFPALAADIEVKMLNKGSNGDAMVFEPATVKAAVGDTITFVPTDKGHDAAYMKDMVPEGVELAKGKMNEAFKVTVDKEGAYVVKCTPHLGMGMVALVIVGDGAPANLDAVKTGKLPKKARERLDAEITALGL
>NZ_CP021371.1|WP_099058519.1|3136630_3137719_-|hypothetical-protein
MASLQSFDAEIEKTRGIVNDMKGKLEQSGVILDQFAKAETKLGDVNFDIENARIQDVINQQKVMEANIADLIIGLEDATNVFGSEFESMKSYTGYEKFIGIFSKQSAQRMRTERVRNMSLAGNLQELLSKSDSIVGILKDQRGVLDQRYKSSEASLIQVIERRKGTIASLEATQKRIEELNPMLLDIENRIAASTDQSARTELEGERSKLATEYNQMQAKEQELLAESQTLERYTSMFQTFVDSLNNQIAAQNTLINKLTIDTEQRIVLYKALEDSLKTAAQQDVAHKINTLGSQVDTAAEETMAGIGSAAQRHIGDLLELHEKNMLSTQDIQRRKKLADEAFARRFQAVLEKHNAANYVKS
>NZ_CP021371.1|WP_099058518.1|3135373_3136522_-|hypothetical-protein
MLNAVDGPVAQYFQSIRAALGGLEIYLRNPDLMLPGSGVAGALLLPYVDRLKNSFACWENRIGFTEQFRISKAESGFPVFQNVLELENDRTSAEKRLAEIPEAAALRTEMVDFILRQKAFPEALQSRMAERLYLEQIGRGAIFSPYVLPETVRVTVNEANHRPYYVVNWAVFDGTNTLPMIYIAGIEDSSANVAKLLVGEDGKLNPDVDIPLPVGGLLNPELAAQFDDFAGKNGAYSLTPATIATNMDKDFPTLHPKLLRRIVLGPFYSAGITENNARINEILSRVRKPENAWLLTWTMQEVFSKAERPAQRGFFSSTPATQEFHIDTGDLEAARMGVSAYEKHALVPHDAYQALYASGEANAIFGNYKVHVISGNNVVSEV
>NZ_CP021371.1|WP_099058517.1|3133443_3135369_-|AAA-family-ATPase
MNGLNAGLTTIREDEIRKHLAVAQGLVTRAVVIDAGDGAGSGTPLAGTNRRFVPTVSTGSVRRTREIELSRTVQSVGGGGDPLMTPQQHAVLYRVRRGIQVALAIADVFARQTDLEQLQLRNLSAPLQGEDAGRFKALLSASAYVAAFSLAAYLLSTLQGEGEPVSDAHEPDFLFDTPQDALKSMVAGLDAAIAGSADEATLVSRARGFARAAIDGLIGRKARFTGLSAFENTHIRIDQDDFTLDGFDVAPGARRKPLSMTFKKPEEIVGNHIAKFQAMKLAKMMMAYDFDRQMNPFVELGGFLFTFIGDGMPGTGKTILIQMLAGLLNDYCQVAGYAFHYENFGVDQISSYQGKSGQNCKAFIDNVTNPRVIGFGTIDDVDQVAAKRSDDRASAGQHEVTAVLMESFAGASTVVRGNCCFGMFSNYPENVDDALRQRAGARWLVDGPQSEADYIDIFALLIGKNHSIPLGEHQLFANQEIKRAVSVSYDKHNRPEEDGLVAVWQRFEKSHGRIETLADIGAYLHEIKLAEPRFTGRAIKNITDAIKMRVMDVELPDEWFAAPEAFMHRSYDEKKAMIAELRGPVTMEMILQEINRYADSEFRYADKSDDAAVADIVRRERLRERAVSEIETMKREGKWQP
>NZ_CP021371.1|WP_099060088.1|3132148_3133447_-|hypothetical-protein
MNRLLEAELIYGRLLTIQEPHLIERYNKALSGFGLRPTALAEFDIDMTGFSPQIAAELGDRDYLDPNRVNRRFVVMTPDQENLPVVHTSFSNTAGLMHEFYRANARAINAITIKDALYGEIEDSVSSVESLEDLLSINEVQFRVLSAEDLLGKAGELRQLADRLQTDPEAWRDDAMLNRMVELAKLTGDIRQNILVPDKLVFRHDAFWANHFGGVYVFVDDKITTVICDPSAPGFRRSRPWQVSYISSKDPATIFDFLAKTGRIELPRASWVDASGLLAHRAEMAALALAYQSDPALDFSRIDAVWLQTFLHRNAELVARDGTYPFLQEMLRQIAATGSIKIADVAPERRFLLIRARPDHPDQWLTNRLISQMVPSDFVSRFIFDKQGFYEAYEGYSDVFREFVVTRLTQTYLQDKAAFRKRLYGIGDDDNA
>NZ_CP021371.1|WP_099058516.1|3131046_3132156_-|DUF2333-family-protein
MLDPVIAFFRRILAAIGRGIGLVFAGLFWPFMAAHGWYQRRNWMIKGPILLFIVIALVFYGQFVWRTQAWHNFNPEMVNGYDFSQRTIAAGVAVPDKPNTCQNSAIVTIAADLTDFNVNQNIWISSTLLYKLGFFGMDWDHTPFFDNKASFQRGVNQVVRRVAIELADNLGRVRGTSGINNDLQDARGNIQFDEGTWYFGTNPFGFKTPTPAYYRSAVNSWRKFNSDLETCKAVFDARADNLTQVLDRMASDLGNTSDILRRRSEEYHAGWFDTRADDRFWFAYGQLYAQYALLRATRADFMDVIRERNLTAIWTEMEKQLEAALRIQPAIISNGAEDGWIMPNHLSTMGFYILRVRSNMVELRAVLER
>NZ_CP021371.1|WP_099058515.1|3130512_3130971_+|PAS-domain-containing-protein
MPLRFDQFQQRDFQDCASVGLDEHEVVDLMQEFHLFGFWRIDLDTGLFYATPDVFRIYGLKTTDSKMSLVEFGARVHPDDLPMVMESFERTCQHKQSYHNIYQALGEDDHYKYVRTVGRFRKKPGTSGEIIGVTYEFFERLRTVAFSDGPEV
>NZ_CP021371.1|WP_099058514.1|3129739_3130462_+|LuxR-family-transcriptional-regulator
MMIAERQSLLSDEISNSRTRPDFMRGMVRVVREFGLDHVTIMSAPGPNDMLLAPFVLESTLPAQFAREFDRNFFLRSCPILPRLNQSILPQTWHLKDGECSNGRSFPPAMCELMERYGLMMGMIFPVTSVDGNRFLLRYDGDRPRLSQVELNELNMISLHAFDVFDRMRRADVVNPNVLSARELEVLRWTAQGKTSIEIGQILSLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLIN
>NZ_CP021371.1|WP_099058523.1|3141154_3142204_+|choline-ABC-transporter-ATP-binding-protein
MTDAVIFGNVDIVFGDNPEKALALVDKGKTRDEIGAETGLVLGVAGASLAVKEGEILVLMGLSGSGKSTLLRAVNGLAPVVRGNVSVRTANGNVDPYRASPKALRDLRMHTVSMVFQQFGLLPWRTVAENVGFGLELAGVPEAERAKTVAEQLALVNLTKWADRKVNELSGGMQQRVGLARAFATGAPILLMDEPFSALDPLIRTRLQDELLEFQSRLKKTILFVSHDLDEAFRIGNRIAIMEGGRIIQCGTPQEIVQNPADQYVTDFVQNMNPINMLTAKDIMAAGLDAPTSQGTVAGTAKPETPLVEILDALSRHPGTIGVVDNGAVIGTISSQDVVNGLTRHRRRN
>NZ_CP021371.1|WP_099058524.1|3142246_3142996_+|HugZ-family-protein
MSDKPSVIRETDDEARGLARRLLRSARYVALSVIDPDNGFPSVSRVLLGTDIDGSAIILVSGLSAHTKALLADNRVSLLAGEPGKGDPLAYARLTVQCLSEAIEHGSAEHARLRARFIARHPKAKLYIDFPDFRFFRLVPQNASLNGGFGKAYLLPGEDFLIPSVTGDELSGHEDVILQELMVKYPDSANVIATTRCGQEPGKWAFCGADRAGIDLICGDLLVRYEFGYLLPSMTDLNSVIPNTAYPVP
>NZ_CP021371.1|WP_099058525.1|3143111_3143429_+|winged-helix-turn-helix-transcriptional-regulator
MKTKALSEQSIAAAGLLSAMANPKRLMILCSLVEGEVPVGVLATQVGLSQSALSQHLSKLRAQKLVKTRRDAQTIYYSSTSESVIKILETLEDIYCQTSASKTAA
>NZ_CP021371.1|WP_099058526.1|3143638_3145609_-|PhoX-family-phosphatase
MSDRQKTRARPNPRRAFAETYGEVLAAGIERRSVLKGLLAIAGSSVAMPFIGGEARAAEVSTLKFSELKRVRDREDHWPEGYGRQILARWGDALFADSPVFDVAKLDGKAAERQFGYNNDFTYYMPLPFGSDSSDHGLMIVSHEYATPFLMFPGLTDEDYRDKLTDDQIRAIMASVGISIFEVRKAGDKWEVVLDGKLDRRIHMSTEMAISGPAAGDDRLKTKADPAGKTVFGTISNCNGGITPWGTMLSGEEGSMDVFAGDYTTLANQELVERQGWDEEDNDIYGVGRVEPRFRFEEEPNEWMRFDWVVEIDPLDPTAKPVKRTALGRFTHEGAQCAVAPDGRVVVFMGDDDDFEYLYRFVSRDPWNPNDRAANRDLLDNGTLSVAKFSSDGTMQWLPLVAGEGPLTAEAGFKSQADVVLNTRGAADLLGATPMDAPEGFVVHPKTGKLYVAMTENEDRLPAGEGEEREQVNFANPRGPNPHGHLLELVPPGSSDKPDFAAESFRWDVFVLCGNPAVAEEGAMFHPATSENGWFTDPDNLSVDPDGRLWVATDGPPPAGIADALFVMDTEGEGRALPKLFYVAPVGSECCSPTFTPDGKTVFVSIQHPGELRFDDDEDATSIADAGTSWPDFKDGLPARPALIVLSRDDRETLGS
>NZ_CP021371.1|WP_099060090.1|3145911_3146436_+|ClbS/DfsB-family-four-helix-bundle-protein
MTVPASKDELLQAIEREYGKLKRELGQIPLARWREKTMEGHAAGTSMSVHDLVAYLVGWNELVLKWHALKAAGEPVDFPETGYKWNELGRLAQKFYRDYEALGDEELLVKLDTAKARIIGLIEQVDDETLYGRPWYEKWTQGRMIQFNTSSPYANACGRLRKWRKNECAASTAL
>NZ_CP021371.1|WP_099058527.1|3146653_3147760_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MKLRLLAGSAIVAFMATAPLAHAEIVIGLIAPLTGPVAAYGEQVKNGAQVAVDEINKKGGILGETVVLKLADDGGEPKQGVSAANQLVGEGIRFVVGPVTSGVAIPASDVFAENGVLMVTPTATAPDLTNRGLTNVLRTCGRDDQQADVAAKYVLANLKDKKIAIINDKGQYGKGLADAFKATLNAGGVTEVFNDALTAGDKDFSALTTRLKAEGAEVVYFGGYHPEGGLLARQLADLGIKALIIGGDGLSNSEYASIGGEAANGTVFTNASDALKNPDSKAAADALAARNIPAEAFTLNAYAAVEVLKAGIEKAGSAEDAEAVTTALKSGEAIPTAIGKVTYGEAGDLTSQAFSLFKWDAGKIVAVE
>NZ_CP021371.1|WP_099060091.1|3147872_3149039_-|DUF3095-domain-containing-protein
MANADDEFLQRLPVLHQFGDVADTQNYEPLPDGWALAVADVINSTGAIDGGRYKAVNMAGAGVISALLNALERYDLPFVFGGDGAVVAVPPPSIETARETLSRVLSWVRDDMDLAMRASIVPVEDIRHHGHDVRVARFNASNDISYAMFSGGGSSWAEARMKEGEYGIASAPKGARPDLSGLSCRWNPIAASYGRIVSIIVLPKPEGDMEAFRRLVSDLVDLSNEDGRGGHPVPAAGPEVGFTEEGIRLEAKARSPYGFGWARVKHTFGISAQMVLVRVLASFNASLGRFSANGYRQGVARNTDFRKFEDGLKMTVDVDARRLAQIRQRLNEARAQGICYFGLHEQDEALMTCIVPSAVRRNHMHFVDGAMGGYATAATYLKAQMGKA
>NZ_CP021371.1|WP_099058528.1|3149225_3150203_-|alpha/beta-hydrolase
MTDQINKTTRRRVLVAGLGLAASTAIPPFFDIAMATTQSEQKETDIMTSSTITTKDGTQIFYKDWGPKDAQPIVFHHGWPLSSDDWDAQMLFFLQQGYRVIAHDRRGHGRSTQTATGNEMDTYAADVAELAAHLDLKNAIHVGHSTGGGEVTRYVARHGGNGRVAKAVLIGAVPPVMVKSDKNPGGLPIEVFDGFRAALVANRAQFFRDIPEGPFYGFNRPGAKVSEGVIANWWRQGMMGGAKAHYDCIAAFSETDFTEDLKTIEVPVLVMHGDDDQIVPIADSALLSAKLLKHPTLKVYKGLPHGMATTHADIINADLLAFFKA
>NZ_CP021371.1|WP_099058529.1|3150350_3150794_+|MarR-family-transcriptional-regulator
MTTQTSPVPLDNQLCFSLYMANIAINRTYKPMLDAMGITYPQYLVLNALGENDGLTVGAIADRLSLESSTITPPVKRLEQAGLVERRRSITDERQVHVFLTEAGRALIDESRCLGETLIARSGMTPEQFQAFNHQVQSFLGAIAGKD
>NZ_CP021371.1|WP_099058530.1|3150936_3152631_+|adenine-deaminase
MTALERRIDQGVGREPADIVLKGGRFFDLVTGELIASDIAICGDTVVGTCGSYSGREEIDITGKIVVPGFIDTHLHIESSLVTPHEFDRCVLPYGVTTVICDPHEIANVLGTEGIQFFLDSSEQTIMDIRVQLSSCVPATHLETSGADLPIERLLPFRNHPKVIGLAEFMNFPGVIHKDPVCMAKLEAFQGQHIDGHSPLLSGNDLNGYLSAGISTDHECTNVPEAMEKIRKGMHILVREGSVSKDLHALMPIITERLSPFLALCTDDRNPLDIAEEGHLDYMIRTAIAHGVEPLAVYRAASISAARAFGLKDRGLVAPGWRADIVVIDSLENCKADIVFSAGRRVTPELFATRKPVAPVGLDSVKARIVKAADFGVPVTEGETPVMGVLPGKIITEHRRYRLPTSGNQTGVDLDRDIIKVAVIERHGRNGNHANGFVQGFDLKKGAIASTVGHDSHNICVVGVSEDDMALAANRLGEIKGGFVVVEDGKVTGEIPLPVAGLMSLEPYEAVRDTLHHLRKAAYALGTTLQEPFLQVAFLPLPVIPHLKISDKGMVDVDKFCLIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

720802 : 770275

Rhizobium_phage(71.11%)

head,capsid,plate,portal,integrase,tail,terminase

attL 711028:711046|attR 740044:740062

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
711028:711046	attL	NA	NA	NA	NA
WP_099056486.1\|720802_722173_+\|integrase	integrase	NA	NA	NA	NA
WP_099056487.1\|722180_722516_+	hypothetical protein	NA	NA	NA	NA
WP_099056488.1\|722532_723672_-	phage Gp37/Gp68 family protein	R9TNA8	Rhizobium_phage	6.5e-147	65.5
WP_099059856.1\|723674_724094_-	hypothetical protein	NA	NA	NA	NA
WP_099056489.1\|724562_725129_-	hypothetical protein	A0A0U1UNM2	Pseudomonas_phage	5.5e-22	54.4
WP_099056490.1\|725125_725317_-	hypothetical protein	NA	NA	NA	NA
WP_186363454.1\|725306_726014_-	hypothetical protein	B2ZY87	Ralstonia_phage	1.4e-30	56.2
WP_099056491.1\|726024_727131_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	5.4e-114	58.9
WP_099056492.1\|727130_727472_-	hypothetical protein	A0A240F4V3	Ochrobactrum_phage	1.1e-22	56.8
WP_099056493.1\|727520_728438_-	DUF2303 family protein	A0A291AUR3	Sinorhizobium_phage	6.1e-95	56.7
WP_099056494.1\|728465_728825_-	hypothetical protein	R9TQI8	Rhizobium_phage	2.2e-48	81.9
WP_099056495.1\|728867_729368_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-47	59.9
WP_099056496.1\|729367_729727_-	hypothetical protein	NA	NA	NA	NA
WP_186363546.1\|729723_729879_-	hypothetical protein	A0A068C9D8	Rhizobium_phage	4.4e-06	54.2
WP_099056497.1\|729875_730352_-	hypothetical protein	A0A240F4V2	Ochrobactrum_phage	3.8e-08	32.7
WP_099056498.1\|730341_731121_-	hypothetical protein	R9TQJ1	Rhizobium_phage	3.3e-49	49.6
WP_099056499.1\|731117_731399_-	hypothetical protein	NA	NA	NA	NA
WP_099056500.1\|731395_731617_-	hypothetical protein	NA	NA	NA	NA
WP_099056501.1\|731613_731943_-	hypothetical protein	NA	NA	NA	NA
WP_099056502.1\|731945_732182_-	hypothetical protein	NA	NA	NA	NA
WP_145959103.1\|732504_733008_+	hypothetical protein	NA	NA	NA	NA
WP_099056504.1\|733009_733867_+	WYL domain-containing protein	NA	NA	NA	NA
WP_099056505.1\|733853_734504_-	transcriptional regulator	NA	NA	NA	NA
WP_099056506.1\|734590_734812_+	hypothetical protein	NA	NA	NA	NA
WP_099056507.1\|734984_735440_+	hypothetical protein	A0A0A8IL22	Aurantimonas_phage	7.9e-11	37.6
WP_099056508.1\|735436_735628_+	hypothetical protein	NA	NA	NA	NA
WP_099056509.1\|735624_736197_+	response regulator transcription factor	A0A0B5A598	Paracoccus_phage	5.1e-07	37.1
WP_099056510.1\|736193_738884_+	DNA methylase N-4	R9TRS8	Rhizobium_phage	1.2e-297	57.4
WP_099056511.1\|738880_739315_+	hypothetical protein	NA	NA	NA	NA
WP_099056512.1\|739319_739817_+	hypothetical protein	NA	NA	NA	NA
WP_099056513.1\|739813_740134_+	hypothetical protein	R9TQK2	Rhizobium_phage	6.5e-12	41.8
740044:740062	attR	NA	NA	NA	NA
WP_186363455.1\|740130_740274_+	hypothetical protein	NA	NA	NA	NA
WP_099056514.1\|740263_742144_+	DNA cytosine methyltransferase	A0A223W0A9	Agrobacterium_phage	1.7e-224	70.4
WP_099056515.1\|742140_743352_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	2.7e-175	72.0
WP_099056516.1\|743361_744636_+	hypothetical protein	R9TNC4	Rhizobium_phage	6.0e-117	52.0
WP_186363456.1\|744628_744796_+	hypothetical protein	NA	NA	NA	NA
WP_099056517.1\|744788_746597_+	DNA primase family protein	A0A0P0IX98	Lactobacillus_phage	5.8e-49	36.5
WP_099059857.1\|746905_747703_+	hypothetical protein	R9TRT9	Rhizobium_phage	8.5e-61	46.2
WP_099056518.1\|747889_748423_+\|tail	phage tail protein	A0A068CHB9	Rhizobium_phage	2.3e-70	75.0
WP_099056519.1\|748595_749246_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	3.6e-17	34.3
WP_099056520.1\|749242_751222_+\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	2.4e-173	46.2
WP_099056521.1\|751218_752859_+\|portal	phage portal protein	R9TN54	Rhizobium_phage	1.2e-231	72.7
WP_099056522.1\|752855_753125_+	hypothetical protein	R9TS76	Rhizobium_phage	1.4e-31	75.3
WP_099056523.1\|753134_754055_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	4.1e-107	61.9
WP_099056524.1\|754202_754643_+	hypothetical protein	NA	NA	NA	NA
WP_099059858.1\|754645_755029_+\|head	head decoration protein	NA	NA	NA	NA
WP_099056525.1\|755040_756051_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	5.4e-44	35.3
WP_186363457.1\|756149_756545_+	hypothetical protein	NA	NA	NA	NA
WP_099056526.1\|756547_756949_+	hypothetical protein	R9TS80	Rhizobium_phage	1.5e-34	50.8
WP_099056527.1\|756935_757667_+	hypothetical protein	A0A068C993	Rhizobium_phage	2.2e-63	60.1
WP_186363458.1\|757688_757859_+	hypothetical protein	R9TP51	Rhizobium_phage	1.1e-10	57.4
WP_099056528.1\|757848_759333_+	hypothetical protein	A0A068CC80	Rhizobium_phage	1.5e-156	58.2
WP_099056529.1\|759393_759768_+\|tail	phage tail tube protein	R9TN68	Rhizobium_phage	4.3e-39	67.2
WP_099056530.1\|759770_760145_+	hypothetical protein	R9TS84	Rhizobium_phage	4.0e-13	42.3
WP_099056531.1\|760203_762087_+\|tail	phage tail tape measure protein	R9TP54	Rhizobium_phage	3.5e-161	59.8
WP_099056532.1\|762104_762563_+	DNA circularization N-terminal domain-containing protein	R9TN75	Rhizobium_phage	2.4e-52	69.7
WP_099056533.1\|762562_763186_+	hypothetical protein	R9TS88	Rhizobium_phage	1.3e-67	66.0
WP_099056534.1\|763186_764260_+	hypothetical protein	R9TQG2	Rhizobium_phage	3.0e-125	64.0
WP_099056535.1\|764256_764676_+\|plate	phage baseplate assembly protein	R9TP58	Rhizobium_phage	1.9e-35	71.3
WP_099059859.1\|764784_765018_+	hypothetical protein	A0A076G7F1	Sinorhizobium_phage	9.6e-05	36.5
WP_099059860.1\|765073_765607_+	phage GP46 family protein	R9TRP7	Rhizobium_phage	6.1e-71	70.5
WP_186363459.1\|765578_766658_+\|plate	baseplate J/gp47 family protein	R9TN81	Rhizobium_phage	3.6e-123	63.5
WP_099056537.1\|766661_767366_+	DUF2313 domain-containing protein	A0A068CH63	Rhizobium_phage	5.6e-72	61.3
WP_099056538.1\|767392_768208_+\|tail	phage tail protein	R9TQG5	Rhizobium_phage	5.4e-10	53.1
WP_099056539.1\|768216_768747_+	hypothetical protein	R9TP62	Rhizobium_phage	3.6e-23	48.1
WP_099056540.1\|768730_769612_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_099056541.1\|769723_770275_+	hypothetical protein	B4UTR7	Rhizobium_phage	2.5e-43	57.9

DBSCAN-SWA_2

1441861 : 1484333

Wolbachia_phage(11.11%)

capsid,head,protease,tail,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145959126.1\|1441861_1442809_+\|transposase	transposase	Q75QL1	Wolbachia_phage	1.6e-21	34.4
WP_099057114.1\|1442853_1443645_+	aldolase	NA	NA	NA	NA
WP_099057116.1\|1444239_1444716_-	MaoC family dehydratase	NA	NA	NA	NA
WP_099057117.1\|1444728_1446378_-	long-chain-fatty-acid--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	7.0e-25	26.0
WP_099057118.1\|1446509_1448273_-	acyl-CoA dehydrogenase C-terminal domain-containing protein	NA	NA	NA	NA
WP_099057119.1\|1448297_1450595_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_099057120.1\|1450597_1451719_-	thiolase family protein	NA	NA	NA	NA
WP_186363489.1\|1451811_1453488_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_099057122.1\|1453919_1454528_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_099059923.1\|1454768_1455242_-	VOC family protein	NA	NA	NA	NA
WP_099057123.1\|1455297_1455498_-	hypothetical protein	NA	NA	NA	NA
WP_099057124.1\|1455854_1456718_-	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_099057125.1\|1456870_1458127_-	hypothetical protein	NA	NA	NA	NA
WP_099059924.1\|1458341_1458695_+	DUF1491 family protein	NA	NA	NA	NA
WP_099057126.1\|1458732_1459788_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_099057127.1\|1460167_1460359_+	hypothetical protein	NA	NA	NA	NA
WP_099057128.1\|1460847_1461396_-	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_099057129.1\|1461388_1461976_-	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_145959128.1\|1462200_1463169_+	hypothetical protein	NA	NA	NA	NA
WP_099057131.1\|1463286_1464483_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_186363490.1\|1464692_1466870_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_099057133.1\|1467108_1467582_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_099057134.1\|1467674_1468736_-	hypothetical protein	NA	NA	NA	NA
WP_099057135.1\|1468732_1469257_-	hypothetical protein	NA	NA	NA	NA
WP_145959129.1\|1469283_1470135_-	N-acetylmuramoyl-L-alanine amidase	A0A223VZK2	Agrobacterium_phage	6.0e-20	33.5
WP_099059925.1\|1470563_1473065_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.7e-87	34.3
WP_099057137.1\|1473137_1473554_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_099059926.1\|1473640_1473847_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_099057138.1\|1474180_1474531_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_099057139.1\|1474850_1475435_+	hypothetical protein	NA	NA	NA	NA
WP_099059927.1\|1476225_1477440_+	DNA-packaging protein	A0A0U4IJ26	Arthrobacter_phage	6.2e-71	42.3
WP_099057140.1\|1477939_1478560_+	hypothetical protein	A0A0F6WBX9	Sinorhizobium_phage	3.8e-32	41.7
WP_099059928.1\|1478762_1479071_+	Dabb family protein	NA	NA	NA	NA
WP_099057141.1\|1479142_1480324_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.5e-64	38.3
WP_099057142.1\|1480594_1480918_+	hypothetical protein	NA	NA	NA	NA
WP_099057143.1\|1481270_1481846_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.1e-28	47.3
WP_099059929.1\|1481860_1483147_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	8.0e-85	43.8
WP_099057144.1\|1483425_1483995_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_099057145.1\|1483997_1484333_+\|head	phage head closure protein	NA	NA	NA	NA

DBSCAN-SWA_3

2007388 : 2036252

uncultured_Mediterranean_phage(12.5%)

capsid,head,protease,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099057586.1\|2007388_2008795_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	4.1e-18	28.9
WP_099057587.1\|2008791_2010102_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.3e-77	40.0
WP_099057588.1\|2010115_2010427_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_099057589.1\|2010694_2012170_+	diguanylate cyclase	NA	NA	NA	NA
WP_099057590.1\|2012376_2012808_+	OsmC family protein	NA	NA	NA	NA
WP_099059979.1\|2012940_2013144_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_099059980.1\|2013550_2013838_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_099059981.1\|2014114_2017927_-	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	53.7
WP_145959141.1\|2018403_2018733_-	hypothetical protein	NA	NA	NA	NA
WP_099057591.1\|2018733_2020638_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_099057592.1\|2020805_2021588_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_099057593.1\|2021584_2021911_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_099057594.1\|2021966_2022377_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099057595.1\|2022459_2022957_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_099057596.1\|2023187_2024030_-	universal stress protein	NA	NA	NA	NA
WP_099057597.1\|2024125_2024914_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_099059982.1\|2025211_2025808_+	NAD(P)H:quinone oxidoreductase type IV	NA	NA	NA	NA
WP_099057598.1\|2025953_2026211_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_145959142.1\|2026673_2026871_-	hypothetical protein	NA	NA	NA	NA
WP_099057599.1\|2026975_2027215_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_099057600.1\|2027442_2027835_-	ORF6N domain-containing protein	A0A0H3UZF1	Geobacillus_virus	8.3e-09	55.4
WP_099057601.1\|2027967_2029134_-	hypothetical protein	A0A2D1GNJ4	Pseudomonas_phage	5.0e-09	35.4
WP_099057602.1\|2029258_2030188_-	hypothetical protein	NA	NA	NA	NA
WP_186363506.1\|2030189_2031842_-\|terminase	terminase large subunit	A0A1X9I6B3	Streptococcus_phage	2.8e-50	27.3
WP_186363507.1\|2031801_2032221_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_099057605.1\|2032217_2032556_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_099057606.1\|2032592_2033204_-	hypothetical protein	NA	NA	NA	NA
WP_145959143.1\|2033381_2033747_-	HNH endonuclease	NA	NA	NA	NA
WP_099057607.1\|2033743_2034124_-	hypothetical protein	NA	NA	NA	NA
WP_099057608.1\|2034126_2034555_-	hypothetical protein	NA	NA	NA	NA
WP_186363508.1\|2034565_2035750_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	7.0e-43	33.4
WP_186363509.1\|2035754_2036252_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.4e-13	35.3

DBSCAN-SWA_4

2085928 : 2095108

uncultured_Mediterranean_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099057654.1\|2085928_2086798_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-32	33.9
WP_099057655.1\|2086806_2087544_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.5e-39	47.5
WP_099059987.1\|2087643_2088750_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	4.3e-10	30.9
WP_099057656.1\|2088783_2088981_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	9.2e-09	72.1
WP_099057657.1\|2089031_2089742_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_099057658.1\|2089738_2090560_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.0e-40	39.2
WP_099057659.1\|2090675_2091959_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.7e-96	45.8
WP_099057660.1\|2091975_2092749_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_099057661.1\|2092745_2093399_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	NA	NA	NA
WP_099057662.1\|2093542_2095108_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	7.6e-13	32.5

DBSCAN-SWA_5

2264297 : 2274503

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099057801.1\|2264297_2267219_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.3
WP_099057802.1\|2267495_2268038_+	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	4.0e-46	76.7
WP_099057803.1\|2268204_2268834_-	MarC family protein	NA	NA	NA	NA
WP_099057804.1\|2269021_2271841_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.9e-95	32.8
WP_164490805.1\|2272260_2272410_-	hypothetical protein	NA	NA	NA	NA
WP_186363514.1\|2272490_2272664_-	hypothetical protein	NA	NA	NA	NA
WP_099057805.1\|2272864_2273359_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.1e-25	38.5
WP_099057806.1\|2273391_2273961_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.1e-46	55.2
WP_099057807.1\|2273993_2274503_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.3e-46	60.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection