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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017685 Staphylococcus aureus strain CFSAN007835 chromosome, complete genome 5 crisprs cas3,DEDDh,DinG,csa3,WYL 4 0 8 0

Results visualization

1. NZ_CP017685
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017685_1 688416-688517 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017685_2 794739-794818 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017685_3 898353-898520 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017685_4 2166237-2166375 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017685_5 2357278-2357371 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017685_2 2.1|794763|32|NZ_CP017685|CRISPRCasFinder 794763-794794 32 NZ_CP017685.1 229842-229873 0 1.0
NZ_CP017685_2 2.1|794763|32|NZ_CP017685|CRISPRCasFinder 794763-794794 32 NZ_CP017685.1 2239352-2239383 0 1.0
NZ_CP017685_2 2.1|794763|32|NZ_CP017685|CRISPRCasFinder 794763-794794 32 NZ_CP017685.1 2239408-2239439 0 1.0
NZ_CP017685_2 2.1|794763|32|NZ_CP017685|CRISPRCasFinder 794763-794794 32 NZ_CP017685.1 2397920-2397951 0 1.0
NZ_CP017685_2 2.1|794763|32|NZ_CP017685|CRISPRCasFinder 794763-794794 32 NZ_CP017685.1 2397978-2398009 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 229854-229867 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 267007-267020 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 794713-794726 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 849647-849660 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 1111598-1111611 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 1332322-1332335 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2193990-2194003 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2204796-2204809 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2204856-2204869 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2204916-2204929 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2239252-2239265 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2239308-2239321 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2239364-2239377 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2239420-2239433 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2397932-2397945 0 1.0
NZ_CP017685_3 3.2|898470|14|NZ_CP017685|PILER-CR 898470-898483 14 NZ_CP017685.1 2397990-2398003 0 1.0
NZ_CP017685_2 2.1|794763|32|NZ_CP017685|CRISPRCasFinder 794763-794794 32 NZ_CP017685.1 1858367-1858398 2 0.938
NZ_CP017685_3 3.3|898465|26|NZ_CP017685|CRISPRCasFinder 898465-898490 26 NZ_CP017685.1 229820-229845 2 0.923
NZ_CP017685_3 3.3|898465|26|NZ_CP017685|CRISPRCasFinder 898465-898490 26 NZ_CP017685.1 2239330-2239355 2 0.923
NZ_CP017685_3 3.3|898465|26|NZ_CP017685|CRISPRCasFinder 898465-898490 26 NZ_CP017685.1 2239386-2239411 2 0.923
NZ_CP017685_4 4.1|2166288|37|NZ_CP017685|CRISPRCasFinder 2166288-2166324 37 NZ_CP017685.1 2166199-2166235 2 0.946

1. spacer 2.1|794763|32|NZ_CP017685|CRISPRCasFinder matches to position: 229842-229873, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

2. spacer 2.1|794763|32|NZ_CP017685|CRISPRCasFinder matches to position: 2239352-2239383, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

3. spacer 2.1|794763|32|NZ_CP017685|CRISPRCasFinder matches to position: 2239408-2239439, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

4. spacer 2.1|794763|32|NZ_CP017685|CRISPRCasFinder matches to position: 2397920-2397951, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

5. spacer 2.1|794763|32|NZ_CP017685|CRISPRCasFinder matches to position: 2397978-2398009, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

6. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 229854-229867, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

7. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 267007-267020, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

8. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 794713-794726, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

9. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 849647-849660, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

10. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 1111598-1111611, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

11. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 1332322-1332335, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

12. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2193990-2194003, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

13. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2204796-2204809, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

14. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2204856-2204869, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

15. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2204916-2204929, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

16. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2239252-2239265, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

17. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2239308-2239321, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

18. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2239364-2239377, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

19. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2239420-2239433, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

20. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2397932-2397945, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

21. spacer 3.2|898470|14|NZ_CP017685|PILER-CR matches to position: 2397990-2398003, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

22. spacer 2.1|794763|32|NZ_CP017685|CRISPRCasFinder matches to position: 1858367-1858398, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacgttattgaaagctgactttccgc	Protospacer
*********.****** ***************

23. spacer 3.3|898465|26|NZ_CP017685|CRISPRCasFinder matches to position: 229820-229845, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.*********.**

24. spacer 3.3|898465|26|NZ_CP017685|CRISPRCasFinder matches to position: 2239330-2239355, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.*********.**

25. spacer 3.3|898465|26|NZ_CP017685|CRISPRCasFinder matches to position: 2239386-2239411, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggtgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.*********.**

26. spacer 4.1|2166288|37|NZ_CP017685|CRISPRCasFinder matches to position: 2166199-2166235, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 720712 : 728531 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 740507 : 754783 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 807053 : 826327 25 Staphylococcus_phage(68.42%) integrase,coat attL 809715:809730|attR 824515:824530
DBSCAN-SWA_4 1013019 : 1021492 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1276632 : 1292317 24 Staphylococcus_phage(57.14%) integrase,portal,terminase,transposase,head attL 1270455:1270472|attR 1295153:1295170
DBSCAN-SWA_6 1564422 : 1572734 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1642048 : 1651092 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1773677 : 1820006 43 Staphylococcus_phage(91.43%) transposase,tRNA,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage