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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017681 Staphylococcus aureus strain CFSAN007851 plasmid pCFSAN007851, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP017680 Staphylococcus aureus strain CFSAN007851 chromosome, complete genome 13 crisprs cas3,DEDDh,DinG,csa3,WYL 6 5 8 0

Results visualization

1. NZ_CP017680
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_1 264448-264638 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_2 630593-630683 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_3 787694-787774 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_4 848622-848703 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_5 1188560-1188652 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_6 1627825-1627906 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_7 1713557-1713643 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_8 1886102-1886244 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_9 2154682-2154762 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_10 2167004-2167090 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_11 2266139-2266224 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_12 2433083-2433161 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017680_13 2572343-2572450 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 116813-116843 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 141169-141199 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 141227-141257 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 141285-141315 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 793217-793247 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 848693-848723 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 897414-897444 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1014731-1014761 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1014847-1014877 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1324121-1324151 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1414102-1414132 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1414160-1414190 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1458808-1458838 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1921725-1921755 0 1.0
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 2300394-2300424 0 1.0
NZ_CP017680_1 1.3|264583|32|NZ_CP017680|CRT 264583-264614 32 NZ_CP017680.1 1115597-1115628 0 1.0
NZ_CP017680_1 1.3|264583|32|NZ_CP017680|CRT 264583-264614 32 NZ_CP017680.1 1199500-1199531 0 1.0
NZ_CP017680_1 1.3|264583|32|NZ_CP017680|CRT 264583-264614 32 NZ_CP017680.1 1199556-1199587 0 1.0
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 2704830-2704858 0 1.0
NZ_CP017680_1 1.1|264472|32|NZ_CP017680|CRT 264472-264503 32 NZ_CP017680.1 1115597-1115628 1 0.969
NZ_CP017680_1 1.1|264472|32|NZ_CP017680|CRT 264472-264503 32 NZ_CP017680.1 1199500-1199531 1 0.969
NZ_CP017680_1 1.1|264472|32|NZ_CP017680|CRT 264472-264503 32 NZ_CP017680.1 1199556-1199587 1 0.969
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 249262-249292 1 0.968
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 916989-917019 1 0.968
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1458866-1458896 1 0.968
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1627794-1627824 1 0.968
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 2539568-2539598 1 0.968
NZ_CP017680_1 1.3|264583|32|NZ_CP017680|CRT 264583-264614 32 NZ_CP017680.1 1608120-1608151 1 0.969
NZ_CP017680_1 1.3|264583|32|NZ_CP017680|CRT 264583-264614 32 NZ_CP017680.1 2704723-2704754 1 0.969
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 342255-342283 1 0.966
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 1199452-1199480 1 0.966
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 1458873-1458901 1 0.966
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 1770917-1770945 1 0.966
NZ_CP017680_4 4.1|848646|34|NZ_CP017680|CRISPRCasFinder 848646-848679 34 NZ_CP017680.1 1324224-1324257 1 0.971
NZ_CP017680_4 4.1|848646|34|NZ_CP017680|CRISPRCasFinder 848646-848679 34 NZ_CP017680.1 1413996-1414029 1 0.971
NZ_CP017680_1 1.1|264472|32|NZ_CP017680|CRT 264472-264503 32 NZ_CP017680.1 1608120-1608151 2 0.938
NZ_CP017680_1 1.1|264472|32|NZ_CP017680|CRT 264472-264503 32 NZ_CP017680.1 2704723-2704754 2 0.938
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 793159-793189 2 0.935
NZ_CP017680_1 1.2|264528|31|NZ_CP017680|CRT 264528-264558 31 NZ_CP017680.1 1115542-1115572 2 0.935
NZ_CP017680_1 1.3|264583|32|NZ_CP017680|CRT 264583-264614 32 NZ_CP017680.1 1593591-1593622 2 0.938
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 141176-141204 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 141234-141262 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 141292-141320 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 249257-249285 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 793154-793182 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 848688-848716 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 897421-897449 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 1115549-1115577 2 0.931
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 NZ_CP017680.1 1115660-1115688 2 0.931
NZ_CP017680_11 11.1|2266169|26|NZ_CP017680|CRISPRCasFinder 2266169-2266194 26 NZ_CP017680.1 1115471-1115496 2 0.923

1. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 116813-116843, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

2. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 141169-141199, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

3. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 141227-141257, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

4. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 141285-141315, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

5. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 793217-793247, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

6. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 848693-848723, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

7. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 897414-897444, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

8. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1014731-1014761, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

9. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1014847-1014877, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

10. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1324121-1324151, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

11. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1414102-1414132, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

12. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1414160-1414190, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

13. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1458808-1458838, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

14. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1921725-1921755, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

15. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 2300394-2300424, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacaggca	Protospacer
*******************************

16. spacer 1.3|264583|32|NZ_CP017680|CRT matches to position: 1115597-1115628, mismatch: 0, identity: 1.0

tagaagctggcggaaagtcagcttacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacaataat	Protospacer
********************************

17. spacer 1.3|264583|32|NZ_CP017680|CRT matches to position: 1199500-1199531, mismatch: 0, identity: 1.0

tagaagctggcggaaagtcagcttacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacaataat	Protospacer
********************************

18. spacer 1.3|264583|32|NZ_CP017680|CRT matches to position: 1199556-1199587, mismatch: 0, identity: 1.0

tagaagctggcggaaagtcagcttacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacaataat	Protospacer
********************************

19. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 2704830-2704858, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

20. spacer 1.1|264472|32|NZ_CP017680|CRT matches to position: 1115597-1115628, mismatch: 1, identity: 0.969

tagaagctggcggaaagtcagcatacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacaataat	Protospacer
********************** *********

21. spacer 1.1|264472|32|NZ_CP017680|CRT matches to position: 1199500-1199531, mismatch: 1, identity: 0.969

tagaagctggcggaaagtcagcatacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacaataat	Protospacer
********************** *********

22. spacer 1.1|264472|32|NZ_CP017680|CRT matches to position: 1199556-1199587, mismatch: 1, identity: 0.969

tagaagctggcggaaagtcagcatacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacaataat	Protospacer
********************** *********

23. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 249262-249292, mismatch: 1, identity: 0.968

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
catagaatttcgaaaagaaattctacaggca	Protospacer
** ****************************

24. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 916989-917019, mismatch: 1, identity: 0.968

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttctaaaagaaattctacaggca	Protospacer
*********** *******************

25. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1458866-1458896, mismatch: 1, identity: 0.968

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaaattctacagaca	Protospacer
****************************.**

26. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1627794-1627824, mismatch: 1, identity: 0.968

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgtaaagaaattctacaggca	Protospacer
************ ******************

27. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 2539568-2539598, mismatch: 1, identity: 0.968

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaatgaaattctacaggca	Protospacer
*************** ***************

28. spacer 1.3|264583|32|NZ_CP017680|CRT matches to position: 1608120-1608151, mismatch: 1, identity: 0.969

tagaagctggcggaaagtcagcttacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacgataat	Protospacer
**************************.*****

29. spacer 1.3|264583|32|NZ_CP017680|CRT matches to position: 2704723-2704754, mismatch: 1, identity: 0.969

tagaagctggcggaaagtcagcttacaataat	CRISPR spacer
tagaagctggcggaaagtcaggttacaataat	Protospacer
********************* **********

30. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 342255-342283, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

31. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 1199452-1199480, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

32. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 1458873-1458901, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

33. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 1770917-1770945, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

34. spacer 4.1|848646|34|NZ_CP017680|CRISPRCasFinder matches to position: 1324224-1324257, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

35. spacer 4.1|848646|34|NZ_CP017680|CRISPRCasFinder matches to position: 1413996-1414029, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

36. spacer 1.1|264472|32|NZ_CP017680|CRT matches to position: 1608120-1608151, mismatch: 2, identity: 0.938

tagaagctggcggaaagtcagcatacaataat	CRISPR spacer
tagaagctggcggaaagtcagcttacgataat	Protospacer
********************** ***.*****

37. spacer 1.1|264472|32|NZ_CP017680|CRT matches to position: 2704723-2704754, mismatch: 2, identity: 0.938

tagaagctggcggaaagtcagcatacaataat	CRISPR spacer
tagaagctggcggaaagtcaggttacaataat	Protospacer
*********************  *********

38. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 793159-793189, mismatch: 2, identity: 0.935

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcgaaaagaatttctacagaca	Protospacer
******************* ********.**

39. spacer 1.2|264528|31|NZ_CP017680|CRT matches to position: 1115542-1115572, mismatch: 2, identity: 0.935

cagagaatttcgaaaagaaattctacaggca	CRISPR spacer
cagagaatttcaaaaagaaattctacagaca	Protospacer
***********.****************.**

40. spacer 1.3|264583|32|NZ_CP017680|CRT matches to position: 1593591-1593622, mismatch: 2, identity: 0.938

tagaagctggcggaaagtcagcttacaataat	CRISPR spacer
tagaagctgacgaaaagtcagcttacaataat	Protospacer
*********.**.*******************

41. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 141176-141204, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

42. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 141234-141262, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

43. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 141292-141320, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

44. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 249257-249285, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

45. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 793154-793182, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaaattcttttcgaaa	Protospacer
********.******* ************

46. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 848688-848716, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

47. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 897421-897449, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

48. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 1115549-1115577, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

49. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to position: 1115660-1115688, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

50. spacer 11.1|2266169|26|NZ_CP017680|CRISPRCasFinder matches to position: 1115471-1115496, mismatch: 2, identity: 0.923

tcgtcaccttctatgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
****** *****.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017680_7 7.1|1713587|27|NZ_CP017680|CRISPRCasFinder 1713587-1713613 27 KM359505 Prochlorococcus phage P-TIM68, complete genome 102710-102736 5 0.815
NZ_CP017680_3 3.1|787720|29|NZ_CP017680|CRISPRCasFinder 787720-787748 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759
NZ_CP017680_10 10.1|2167031|33|NZ_CP017680|CRISPRCasFinder 2167031-2167063 33 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23035-23067 7 0.788
NZ_CP017680_10 10.1|2167031|33|NZ_CP017680|CRISPRCasFinder 2167031-2167063 33 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7568-7600 7 0.788
NZ_CP017680_1 1.1|264472|32|NZ_CP017680|CRT 264472-264503 32 NZ_CP044300 Escherichia coli strain P59A plasmid pP59A-2, complete sequence 114277-114308 8 0.75
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019135 Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome 168170-168200 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019114 Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome 168088-168118 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019138 Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome 168191-168221 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019122 Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome 168181-168211 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019055 Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome 168190-168220 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019038 Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome 167969-167999 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019068 Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome 168127-168157 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019137 Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome 168185-168215 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019157 Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome 168188-168218 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019087 Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome 168134-168164 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019076 Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome 169268-169298 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019065 Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome 168075-168105 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019026 Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome 168178-168208 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019081 Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome 168088-168118 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019033 Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome 167931-167961 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 NC_023584 Synechococcus phage S-MbCM100, complete genome 168127-168157 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019153 Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome 168062-168092 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019158 Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome 168188-168218 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019067 Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome 168088-168118 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019039 Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome 168192-168222 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019030 Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome 168175-168205 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019163 Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome 168075-168105 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019071 Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome 171777-171807 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019116 Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome 167299-167329 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019088 Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome 168172-168202 9 0.71
NZ_CP017680_2 2.1|630623|31|NZ_CP017680|CRISPRCasFinder 630623-630653 31 KJ019084 Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome 168079-168109 9 0.71

1. spacer 7.1|1713587|27|NZ_CP017680|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

2. spacer 3.1|787720|29|NZ_CP017680|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

3. spacer 10.1|2167031|33|NZ_CP017680|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 7, identity: 0.788

ttgcatatctttagctttattgtttgcaactga	CRISPR spacer
ttgcatatctttagctttatagcttttatatgc	Protospacer
******************** *.** .*  ** 

4. spacer 10.1|2167031|33|NZ_CP017680|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

ttgcatatctttagctttattgtttgcaactga	CRISPR spacer
ttgaataactttagctttattgttataaacagt	Protospacer
*** *** ****************   *** * 

5. spacer 1.1|264472|32|NZ_CP017680|CRT matches to NZ_CP044300 (Escherichia coli strain P59A plasmid pP59A-2, complete sequence) position: , mismatch: 8, identity: 0.75

tagaagctggcggaaagtcagcatacaataat	CRISPR spacer
aagaagctggcggaacttcagcattagttaaa	Protospacer
 **************  *******  . *** 

6. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019135 (Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

7. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019114 (Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

8. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019138 (Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

9. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019122 (Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

10. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019055 (Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

11. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019038 (Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

12. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019068 (Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

13. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019137 (Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

14. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019157 (Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

15. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019087 (Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

16. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019076 (Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

17. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019065 (Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

18. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019026 (Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

19. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019081 (Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

20. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019033 (Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

21. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to NC_023584 (Synechococcus phage S-MbCM100, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

22. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019153 (Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

23. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019158 (Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

24. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019067 (Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

25. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019039 (Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

26. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019030 (Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

27. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019163 (Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

28. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

29. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019116 (Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

30. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019088 (Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

31. spacer 2.1|630623|31|NZ_CP017680|CRISPRCasFinder matches to KJ019084 (Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome) position: , mismatch: 9, identity: 0.71

gtgaagaggaacgcagttggatattaaggca	CRISPR spacer
cattggaggaacgcagttggatataatggat	Protospacer
    .******************* * **  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 724809 : 732630 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 744602 : 759333 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 810015 : 827929 18 Staphylococcus_phage(53.33%) capsid,integrase,terminase attL 813310:813324|attR 826772:826786
DBSCAN-SWA_4 1016211 : 1024684 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1565131 : 1573461 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1643013 : 1652056 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1775914 : 1851707 71 Staphylococcus_phage(94.74%) transposase,tRNA,protease NA
DBSCAN-SWA_8 1933110 : 2032565 112 Staphylococcus_phage(87.5%) capsid,terminase,head,tRNA,holin,portal,integrase,tail,protease attL 1982135:1982152|attR 2028594:2028611
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage