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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017695 Bifidobacterium pseudolongum subsp. globosum DSM 20092 chromosome, complete genome 7 crisprs DEDDh,cas3,WYL,c2c9_V-U4 0 3 1 0

Results visualization

1. NZ_CP017695
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_1 48406-48533 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_2 104335-104464 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_3 263472-263620 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_4 854485-854570 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_5 858709-858793 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_6 1057089-1057166 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017695_7 1772570-1772652 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017695_1 1.1|48431|25|NZ_CP017695|CRISPRCasFinder 48431-48455 25 NZ_CP025433 Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence 54351-54375 4 0.84
NZ_CP017695_2 2.1|104359|29|NZ_CP017695|CRISPRCasFinder 104359-104387 29 NZ_CP035408 Bacillus subtilis strain SRCM103612 plasmid unnamed2 1777-1805 6 0.793
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP031599 Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence 341132-341161 7 0.767
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 53894-53923 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP022422 Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-7, complete sequence 72994-73023 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP007257 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence 451117-451146 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP043620 Rhodobacteraceae bacterium SH-1 plasmid p2, complete sequence 58281-58310 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP022197 Celeribacter ethanolicus strain TSPH2 plasmid unnamed, complete sequence 122286-122315 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP021117 Rhodobacteraceae bacterium strain G7 plasmid unnamed3, complete sequence 42862-42891 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP010870 Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6001, complete sequence 63770-63799 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP040819 Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 471290-471319 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP012662 Defluviimonas alba strain cai42 plasmid pcai42A, complete sequence 80788-80817 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_AP022339 Mameliella alba strain KU6B plasmid pKUB112, complete sequence 6047-6076 8 0.733
NZ_CP017695_6 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder 1057113-1057142 30 NZ_CP004395 Celeribacter indicus strain P73 plasmid pP73B, complete sequence 96330-96359 8 0.733

1. spacer 1.1|48431|25|NZ_CP017695|CRISPRCasFinder matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 4, identity: 0.84

cccttagcgaccagccccgtcgcat	CRISPR spacer
agctgatcgaccagccccgtcgcat	Protospacer
  ** * ******************

2. spacer 2.1|104359|29|NZ_CP017695|CRISPRCasFinder matches to NZ_CP035408 (Bacillus subtilis strain SRCM103612 plasmid unnamed2) position: , mismatch: 6, identity: 0.793

cacatacaaccgtcattgtgcccgaacat	CRISPR spacer
cacatacaaccgtcattgggccaaagtaa	Protospacer
****************** *** .*..* 

3. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 7, identity: 0.767

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacctgtgtcg	Protospacer
 ************** ******* *.*.  

4. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

5. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP022422 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-7, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

6. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP007257 (Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
agagttattccacgccgctgaccagcgcac	Protospacer
* . . .********* *.***********

7. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP043620 (Rhodobacteraceae bacterium SH-1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

8. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP022197 (Celeribacter ethanolicus strain TSPH2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

9. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP021117 (Rhodobacteraceae bacterium strain G7 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

10. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP010870 (Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6001, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

11. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
cggccagttctacgcccccgaccagatgat	Protospacer
  ********.*****.********   *.

12. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP012662 (Defluviimonas alba strain cai42 plasmid pcai42A, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

13. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_AP022339 (Mameliella alba strain KU6B plasmid pKUB112, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

14. spacer 6.1|1057113|30|NZ_CP017695|CRISPRCasFinder matches to NZ_CP004395 (Celeribacter indicus strain P73 plasmid pP73B, complete sequence) position: , mismatch: 8, identity: 0.733

acgccagttccacgcctccgaccagcgcac	CRISPR spacer
ccgccagttccacgcgtccgacttgtgtcg	Protospacer
 ************** ******. *.*.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 118505 : 187786 54 Mycobacterium_phage(15.38%) protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage