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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017705 Brevibacillus laterosporus DSM 25, complete genome 1 crisprs DEDDh,WYL,cas3,csa3,cas14j,DinG 2 3 12 0

Results visualization

1. NZ_CP017705
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017705_1 2755804-2756495 Orphan NA
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017705_1 1.1|2755848|64|NZ_CP017705|CRT 2755848-2755911 64 NZ_CP017705.1 2755794-2755857 4 0.938
NZ_CP017705_1 1.2|2755956|64|NZ_CP017705|CRT 2755956-2756019 64 NZ_CP017705.1 2755794-2755857 4 0.938

1. spacer 1.1|2755848|64|NZ_CP017705|CRT matches to position: 2755794-2755857, mismatch: 4, identity: 0.938

cggggcaactggagcgactggagcgaccggggcaactggagcgactggagcgaccggggc	CRISPR spacer
cggggcaactggagcgactggagcgaccggggcaactggagcgactggagcgaccggggc	Protospacer
************************************************************

2. spacer 1.2|2755956|64|NZ_CP017705|CRT matches to position: 2755794-2755857, mismatch: 4, identity: 0.938

cggggcaactggagcgactggagcgaccggggcaactggagcgactggagcgaccggggc	CRISPR spacer
cggggcaactggagcgactggagcgaccggggcaactggagcgactggagcgaccggggc	Protospacer
************************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP011350 Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence 538201-538228 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP013056 Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence 177264-177291 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_AP014866 Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence 155144-155171 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 MN693092 Marine virus AFVG_25M37, complete genome 19081-19108 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP004876 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence 286491-286518 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP004876 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence 287769-287796 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NC_017203 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence 23903-23930 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NC_020384 Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence 28125-28152 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP004861 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence 282346-282373 5 0.821
NZ_CP017705_1 1.7|2756361|28|NZ_CP017705|CRT 2756361-2756388 28 CP011076 Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence 251925-251952 5 0.821
NZ_CP017705_1 1.7|2756361|28|NZ_CP017705|CRT 2756361-2756388 28 NZ_CP011518 Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence 243047-243074 5 0.821
NZ_CP017705_1 1.7|2756361|28|NZ_CP017705|CRT 2756361-2756388 28 KY421186 Flavobacterium phage FL-1, complete genome 26689-26716 5 0.821
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP021071 Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence 531493-531520 6 0.786
NZ_CP017705_1 1.5|2756226|28|NZ_CP017705|CRT 2756226-2756253 28 NZ_CP021071 Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence 531493-531520 6 0.786
NZ_CP017705_1 1.5|2756226|28|NZ_CP017705|CRT 2756226-2756253 28 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1601386-1601413 6 0.786
NZ_CP017705_1 1.4|2756154|28|NZ_CP017705|CRT 2756154-2756181 28 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1601386-1601413 7 0.75
NZ_CP017705_1 1.7|2756361|28|NZ_CP017705|CRT 2756361-2756388 28 MK814759 Gordonia phage Reyja, complete genome 27300-27327 7 0.75
NZ_CP017705_1 1.7|2756361|28|NZ_CP017705|CRT 2756361-2756388 28 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 190379-190406 8 0.714

1. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

2. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

3. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

4. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to MN693092 (Marine virus AFVG_25M37, complete genome) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggatcaaccggagctaccggagctact	Protospacer
.**. ********* ********* ***

5. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

6. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

7. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

8. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

9. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaaccggagataccggagcgact	CRISPR spacer
tggacctaccggagataccggagcaact	Protospacer
.**. * *****************.***

10. spacer 1.7|2756361|28|NZ_CP017705|CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaacgggggcaaccggagatacc	CRISPR spacer
cggggcaaccggagcaaccggagcaact	Protospacer
********* **.**********  **.

11. spacer 1.7|2756361|28|NZ_CP017705|CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 5, identity: 0.821

cggggcaacgggggcaaccggagatacc	CRISPR spacer
cggcgcaacgggggcgaccggagcgatc	Protospacer
*** ***********.*******  *.*

12. spacer 1.7|2756361|28|NZ_CP017705|CRT matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 5, identity: 0.821

cggggcaacgggggcaaccggagatacc	CRISPR spacer
cggagcaacgggagcaaccggagcaatc	Protospacer
***.********.**********  *.*

13. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 6, identity: 0.786

cggggcaaccggagataccggagcgact	CRISPR spacer
aggagcaaccggtgataccggagcaaaa	Protospacer
 **.******** ***********.*  

14. spacer 1.5|2756226|28|NZ_CP017705|CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 6, identity: 0.786

cggggcaaccggagataccggagcgacc	CRISPR spacer
aggagcaaccggtgataccggagcaaaa	Protospacer
 **.******** ***********.*  

15. spacer 1.5|2756226|28|NZ_CP017705|CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.786

cggggcaaccggagataccggagcgacc	CRISPR spacer
gcaggcaaccggcgatacgggagcgatc	Protospacer
  .********* ***** *******.*

16. spacer 1.4|2756154|28|NZ_CP017705|CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.75

cggggcaaccggagataccggagcgact	CRISPR spacer
gcaggcaaccggcgatacgggagcgatc	Protospacer
  .********* ***** *******..

17. spacer 1.7|2756361|28|NZ_CP017705|CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 7, identity: 0.75

cggggcaacgggggcaaccggagatacc	CRISPR spacer
cggggcaacgggcgcaaccggcctgggc	Protospacer
************ ********    . *

18. spacer 1.7|2756361|28|NZ_CP017705|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 8, identity: 0.714

cggggcaacgggggcaaccggagatacc	CRISPR spacer
cggggcaacgcgggcaaccgggtgggta	Protospacer
********** **********. . .. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 240623 : 288240 39 Brevibacillus_phage(33.33%) integrase,tRNA,coat,transposase attL 231405:231419|attR 286902:286916
DBSCAN-SWA_2 965595 : 971103 6 Brevibacillus_phage(66.67%) integrase attL 955964:955977|attR 976467:976480
DBSCAN-SWA_3 1083340 : 1095132 19 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_4 1133370 : 1153097 12 Brevibacillus_phage(77.78%) NA NA
DBSCAN-SWA_5 1156964 : 1173081 18 Brevibacillus_phage(81.82%) protease NA
DBSCAN-SWA_6 1192783 : 1200728 10 Bacillus_phage(66.67%) holin NA
DBSCAN-SWA_7 2765205 : 2771377 8 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 2941350 : 2990036 77 Brevibacillus_phage(87.14%) terminase,tail,plate,holin,bacteriocin,portal NA
DBSCAN-SWA_9 4014504 : 4038396 41 Paenibacillus_phage(43.48%) NA NA
DBSCAN-SWA_10 4041573 : 4048199 10 Paenibacillus_phage(37.5%) NA NA
DBSCAN-SWA_11 4052473 : 4074995 31 uncultured_Caudovirales_phage(40.91%) terminase,integrase,tail,plate,holin,portal attL 4062807:4062820|attR 4079536:4079549
DBSCAN-SWA_12 4504085 : 4547140 33 Brevibacillus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage