CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP015245	Escherichia coli O91 str. RM7190 plasmid pRM7190-1, complete sequence	0 crisprs	NA	0	0
NZ_CP015246	Escherichia coli O91 str. RM7190 plasmid pRM7190-2, complete sequence	0 crisprs	NA	0	0
NZ_CP015244	Escherichia coli O91 str. RM7190 chromosome, complete genome	4 crisprs	DinG,cas3,c2c9_V-U4,DEDDh,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	5	9

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015244_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015244_1

843982-844127

Orphan

Consensus_repeat	Method
CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015244_1

>merge|NZ_CP015244|1|843982-844127|CRISPRCasFinder
CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGTATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCG

>NZ_CP015244|1|1|843982-844127|CRISPRCasFinder
CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	TATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATC
CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015244.1\|WP_001036483.1\|840075_841509_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP015244.1\|WP_000246805.1\|849710_850466_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP015244.1\|WP_000101987.1\|833277_834051_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP015244.1\|WP_099205828.1\|848569_849724_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP015244.1\|WP_000891515.1\|832961_833111_+\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
NZ_CP015244.1\|WP_001295302.1\|853927_854836_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP015244.1\|WP_000042533.1\|851714_853736_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP015244.1\|WP_000044868.1\|850458_851136_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP015244.1\|WP_000723652.1\|838947_840000_+\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP015244.1\|WP_001295301.1\|855232_856222_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP015244.1\|WP_001091569.1\|844186_845470_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP015244.1\|WP_000593936.1\|841691_843953_+\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP015244.1\|WP_000815449.1\|836774_837770_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_CP015244.1\|WP_001307065.1\|846156_847446_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP015244.1\|WP_000767389.1\|845621_846098_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP015244.1\|WP_000891685.1\|834742_835801_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP015244.1\|WP_000213425.1\|835801_836620_-\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP015244.1\|WP_000679972.1\|837810_838764_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP015244.1\|WP_000604032.1\|834050_834740_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP015244.1\|WP_000951213.1\|847532_848573_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063

Protein	Function_ID	Function_description	E-value
NZ_CP015244.1\|WP_001036483.1\|840075_841509_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP015244.1\|WP_000246805.1\|849710_850466_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.57982e-172
NZ_CP015244.1\|WP_000101987.1\|833277_834051_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP015244.1\|WP_099205828.1\|848569_849724_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP015244.1\|WP_000891515.1\|832961_833111_+\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP015244.1\|WP_001295302.1\|853927_854836_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
NZ_CP015244.1\|WP_000042533.1\|851714_853736_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP015244.1\|WP_000044868.1\|850458_851136_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	7.09172e-110
NZ_CP015244.1\|WP_000723652.1\|838947_840000_+\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP015244.1\|WP_001295301.1\|855232_856222_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP015244.1\|WP_001091569.1\|844186_845470_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP015244.1\|WP_000593936.1\|841691_843953_+\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP015244.1\|WP_000815449.1\|836774_837770_+\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_CP015244.1\|WP_001307065.1\|846156_847446_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP015244.1\|WP_000767389.1\|845621_846098_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
NZ_CP015244.1\|WP_000891685.1\|834742_835801_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP015244.1\|WP_000213425.1\|835801_836620_-\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP015244.1\|WP_000679972.1\|837810_838764_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
NZ_CP015244.1\|WP_000604032.1\|834050_834740_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	9.04539e-146
NZ_CP015244.1\|WP_000951213.1\|847532_848573_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0

>NZ_CP015244.1|WP_000593936.1|841691_843953_+|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_CP015244.1|WP_001036483.1|840075_841509_+|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAVGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWVDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP015244.1|WP_000723652.1|838947_840000_+|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP015244.1|WP_000679972.1|837810_838764_-|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_CP015244.1|WP_000815449.1|836774_837770_+|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYSIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP015244.1|WP_000213425.1|835801_836620_-|pyridoxal-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP015244.1|WP_000891685.1|834742_835801_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMAKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELVIKPGLWLYAQIKSVSITA
>NZ_CP015244.1|WP_000604032.1|834050_834740_+|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITIPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP015244.1|WP_000101987.1|833277_834051_+|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>NZ_CP015244.1|WP_000891515.1|832961_833111_+|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH
>NZ_CP015244.1|WP_001091569.1|844186_845470_-|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP015244.1|WP_000767389.1|845621_846098_-|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>NZ_CP015244.1|WP_001307065.1|846156_847446_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>NZ_CP015244.1|WP_000951213.1|847532_848573_+|biotin-synthase-BioB
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>NZ_CP015244.1|WP_099205828.1|848569_849724_+|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLARLLASPCPGQQLVVTEGVFSMDGDIAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFSVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>NZ_CP015244.1|WP_000246805.1|849710_850466_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAALYEQHADLQRQSADVLLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>NZ_CP015244.1|WP_000044868.1|850458_851136_+|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGSEKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>NZ_CP015244.1|WP_000042533.1|851714_853736_+|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP015244.1|WP_001295302.1|853927_854836_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>NZ_CP015244.1|WP_001295301.1|855232_856222_+|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG

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Crispr_ID: NZ_CP015244_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015244_2

3868314-3868431

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015244_2

>merge|NZ_CP015244|2|3868314-3868431|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>NZ_CP015244|2|2|3868314-3868431|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015244.1\|WP_000531201.1\|3871700_3872687_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP015244.1\|WP_000548347.1\|3857605_3858595_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP015244.1\|WP_000785722.1\|3873623_3874028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP015244.1\|WP_001198780.1\|3870444_3870801_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP015244.1\|WP_000145820.1\|3856035_3856380_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP015244.1\|WP_000603618.1\|3872756_3873239_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP015244.1\|WP_000633577.1\|3868691_3869393_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP015244.1\|WP_000159770.1\|3869497_3870394_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP015244.1\|WP_000031415.1\|3874030_3874336_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP015244.1\|WP_000719990.1\|3863523_3863913_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP015244.1\|WP_000861734.1\|3861215_3863510_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP015244.1\|WP_000384145.1\|3871042_3871408_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP015244.1\|WP_001295544.1\|3868504_3868669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015244.1\|WP_000460519.1\|3866982_3868293_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP015244.1\|WP_000622115.1\|3863984_3865349_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP015244.1\|WP_000104214.1\|3856568_3857507_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP015244.1\|WP_000096086.1\|3873334_3873634_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP015244.1\|WP_001367931.1\|3859973_3861182_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP015244.1\|WP_000401598.1\|3865623_3866955_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP015244.1\|WP_000107723.1\|3858616_3859948_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191

Protein	Function_ID	Function_description	E-value
NZ_CP015244.1\|WP_000531201.1\|3871700_3872687_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP015244.1\|WP_000548347.1\|3857605_3858595_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP015244.1\|WP_000785722.1\|3873623_3874028_-\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
NZ_CP015244.1\|WP_001198780.1\|3870444_3870801_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35
NZ_CP015244.1\|WP_000145820.1\|3856035_3856380_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	3.36123e-66
NZ_CP015244.1\|WP_000603618.1\|3872756_3873239_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.8476e-29
NZ_CP015244.1\|WP_000633577.1\|3868691_3869393_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
NZ_CP015244.1\|WP_000159770.1\|3869497_3870394_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.74351e-51
NZ_CP015244.1\|WP_000031415.1\|3874030_3874336_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP015244.1\|WP_000719990.1\|3863523_3863913_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
NZ_CP015244.1\|WP_000861734.1\|3861215_3863510_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP015244.1\|WP_000384145.1\|3871042_3871408_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
NZ_CP015244.1\|WP_000460519.1\|3866982_3868293_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP015244.1\|WP_000622115.1\|3863984_3865349_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP015244.1\|WP_000104214.1\|3856568_3857507_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP015244.1\|WP_000096086.1\|3873334_3873634_-\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
NZ_CP015244.1\|WP_001367931.1\|3859973_3861182_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP015244.1\|WP_000401598.1\|3865623_3866955_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
NZ_CP015244.1\|WP_000107723.1\|3858616_3859948_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0

>NZ_CP015244.1|WP_000460519.1|3866982_3868293_+|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP015244.1|WP_000401598.1|3865623_3866955_+|HAAAP-family-serine/threonine-permease
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>NZ_CP015244.1|WP_000622115.1|3863984_3865349_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>NZ_CP015244.1|WP_000719990.1|3863523_3863913_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP015244.1|WP_000861734.1|3861215_3863510_+|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP015244.1|WP_001367931.1|3859973_3861182_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGVIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP015244.1|WP_000107723.1|3858616_3859948_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP015244.1|WP_000548347.1|3857605_3858595_+|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP015244.1|WP_000104214.1|3856568_3857507_+|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLSADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP015244.1|WP_000145820.1|3856035_3856380_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNIKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>NZ_CP015244.1|WP_001295544.1|3868504_3868669_-|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP015244.1|WP_000633577.1|3868691_3869393_-|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP015244.1|WP_000159770.1|3869497_3870394_+|LysR-family-transcriptional-regulator
MTKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>NZ_CP015244.1|WP_001198780.1|3870444_3870801_-|DUF805-domain-containing-protein
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>NZ_CP015244.1|WP_000384145.1|3871042_3871408_-|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>NZ_CP015244.1|WP_000531201.1|3871700_3872687_-|glutathione-S-transferase-family-protein
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP015244.1|WP_000603618.1|3872756_3873239_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>NZ_CP015244.1|WP_000096086.1|3873334_3873634_-|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP015244.1|WP_000785722.1|3873623_3874028_-|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP015244.1|WP_000031415.1|3874030_3874336_-|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: NZ_CP015244_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015244_3

4344873-4345026

Unclear

I-E

Consensus_repeat	Method
AGAGTTCCCCGCGCCAGCGGGGATAAACCGCC	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP015244_3

>merge|NZ_CP015244|3|4344873-4345026|PILER-CR,CRISPRCasFinder
AGAGTTCCCCGCGCCAGCGGGGATAAACCGAAACCGGACGAGGGCGCGCTAAAACGTGATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCTCTCAATTTGTAACGTCTGCAATGTCAGGCGAGTTCCCCGCGCCAGCGGGGATAAACCACC

>NZ_CP015244|3|1|4344873-4345026|PILER-CR
AGAGTTCCCCGCGCCAGCGGGGATAAACCGAA	ACCGGACGAGGGCGCGCTAAAACGTGATT
AGAGTTCCCCGCGCCAGCGGGGATAAACCGCC	TCTCAATTTGTAACGTCTGCAATGTCAGG
CGAGTTCCCCGCGCCAGCGGGGATAAACCACC

>NZ_CP015244|3|3|4344874-4345023|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACC	GAAACCGGACGAGGGCGCGCTAAAACGTGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCTCTCAATTTGTAACGTCTGCAATGTCAGGC
GAGTTCCCCGCGCCAGCGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015244.1\|WP_001164567.1\|4347167_4348445_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP015244.1\|WP_001098105.1\|4351166_4352504_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP015244.1\|WP_001307365.1\|4355108_4356380_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP015244.1\|WP_000210878.1\|4339614_4341252_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP015244.1\|WP_001268452.1\|4342697_4343570_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP015244.1\|WP_000226815.1\|4335629_4337864_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP015244.1\|WP_000254745.1\|4338189_4338525_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP015244.1\|WP_001199973.1\|4343862_4344534_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP015244.1\|WP_001288227.1\|4343583_4343724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015244.1\|WP_001071648.1\|4338595_4339387_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP015244.1\|WP_000046791.1\|4334280_4335582_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP015244.1\|WP_000039712.1\|4345662_4347141_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP015244.1\|WP_000109367.1\|4354857_4355118_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP015244.1\|WP_001299652.1\|4352481_4353261_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP015244.1\|WP_001130266.1\|4354265_4354841_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP015244.1\|WP_000581937.1\|4337941_4338190_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP015244.1\|WP_000021321.1\|4348763_4349549_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP015244.1\|WP_000036723.1\|4341339_4342638_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP015244.1\|WP_000059280.1\|4349618_4351073_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP015244.1\|WP_001299097.1\|4353257_4354118_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936

Protein	Function_ID	Function_description	E-value
NZ_CP015244.1\|WP_001164567.1\|4347167_4348445_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.44047e-29
NZ_CP015244.1\|WP_001098105.1\|4351166_4352504_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
NZ_CP015244.1\|WP_000210878.1\|4339614_4341252_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP015244.1\|WP_001268452.1\|4342697_4343570_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.00793e-100
NZ_CP015244.1\|WP_000226815.1\|4335629_4337864_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP015244.1\|WP_000254745.1\|4338189_4338525_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP015244.1\|WP_001199973.1\|4343862_4344534_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP015244.1\|WP_001307365.1\|4355108_4356380_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.54709e-126
NZ_CP015244.1\|WP_001071648.1\|4338595_4339387_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP015244.1\|WP_000046791.1\|4334280_4335582_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP015244.1\|WP_000039712.1\|4345662_4347141_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.33202e-110
NZ_CP015244.1\|WP_000109367.1\|4354857_4355118_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NZ_CP015244.1\|WP_001299652.1\|4352481_4353261_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP015244.1\|WP_001130266.1\|4354265_4354841_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP015244.1\|WP_000581937.1\|4337941_4338190_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP015244.1\|WP_000021321.1\|4348763_4349549_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140
NZ_CP015244.1\|WP_000036723.1\|4341339_4342638_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP015244.1\|WP_000059280.1\|4349618_4351073_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.77872e-82
NZ_CP015244.1\|WP_001299097.1\|4353257_4354118_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90

>NZ_CP015244.1|WP_001199973.1|4343862_4344534_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP015244.1|WP_001288227.1|4343583_4343724_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP015244.1|WP_001268452.1|4342697_4343570_-|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNSQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP015244.1|WP_000036723.1|4341339_4342638_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP015244.1|WP_000210878.1|4339614_4341252_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP015244.1|WP_001071648.1|4338595_4339387_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP015244.1|WP_000254745.1|4338189_4338525_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP015244.1|WP_000581937.1|4337941_4338190_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP015244.1|WP_000226815.1|4335629_4337864_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP015244.1|WP_000046791.1|4334280_4335582_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARVLEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP015244.1|WP_000039712.1|4345662_4347141_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWTWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP015244.1|WP_001164567.1|4347167_4348445_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP015244.1|WP_000021321.1|4348763_4349549_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP015244.1|WP_000059280.1|4349618_4351073_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAIVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP015244.1|WP_001098105.1|4351166_4352504_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP015244.1|WP_001299652.1|4352481_4353261_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP015244.1|WP_001299097.1|4353257_4354118_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP015244.1|WP_001130266.1|4354265_4354841_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP015244.1|WP_000109367.1|4354857_4355118_-|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP015244.1|WP_001307365.1|4355108_4356380_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDILQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP015244_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015244_4

4370727-4371610

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP015244_4

>merge|NZ_CP015244|4|4370727-4371610|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCTAATGCAGTACGCGCCGGATCCGGTGTTACGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCATCCGTTCAAATTCCATCAGATAGCAAACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTGTTGACTGCTACGAATACGCAGACGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCGGAATCACATTAAAAGGGAACCCGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCGGTTTTAAAATAAACCCGGCAAAAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAACGCGAAAGCGTCGGCGGTCAGTCGGCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATATCGGGTGCCAGCCTGGACGCTGGCCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCGAATCGGCGGTTTTGAGCGGGTAGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAACAGCTAACCACCGCCGGGGCGGTTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATGATGTAATAATTAGAGCAGAATCCAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAATTTAAAATCATTTAAGCTTGTAAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTACACGGATATTCTGTCTAAAAGTTAACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGATAACGCCGGAGCCTTCTTTTTCAGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP015244|4|2|4370727-4371610|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AATGCAGTACGCGCCGGATCCGGTGTTACGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCGTTCAAATTCCATCAGATAGCAAACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTGTTGACTGCTACGAATACGCAGACGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCGGAATCACATTAAAAGGGAACCCGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCGGTTTTAAAATAAACCCGGCAAAAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCGGGTGCCAGCCTGGACGCTGGCCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATGATGTAATAATTAGAGCAGAATCCAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATTTAAAATCATTTAAGCTTGTAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACACGGATATTCTGTCTAAAAGTTAACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP015244|4|4|4370727-4371610|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AATGCAGTACGCGCCGGATCCGGTGTTACGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCGTTCAAATTCCATCAGATAGCAAACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTGTTGACTGCTACGAATACGCAGACGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCGGAATCACATTAAAAGGGAACCCGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCGGTTTTAAAATAAACCCGGCAAAAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCGGGTGCCAGCCTGGACGCTGGCCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATGATGTAATAATTAGAGCAGAATCCAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATTTAAAATCATTTAAGCTTGTAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACACGGATATTCTGTCTAAAAGTTAACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP015244|4|1|4370727-4371610|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AATGCAGTACGCGCCGGATCCGGTGTTACGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCGTTCAAATTCCATCAGATAGCAAACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTGTTGACTGCTACGAATACGCAGACGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCGGAATCACATTAAAAGGGAACCCGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCGGTTTTAAAATAAACCCGGCAAAAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCGGGTGCCAGCCTGGACGCTGGCCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGCTAACCACCGCCGGGGCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATGATGTAATAATTAGAGCAGAATCCAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATTTAAAATCATTTAAGCTTGTAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACACGGATATTCTGTCTAAAAGTTAACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015244.1\|WP_001295182.1\|4379035_4379797_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP015244.1\|WP_000206432.1\|4366975_4368031_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP015244.1\|WP_000063179.1\|4370336_4370630_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP015244.1\|WP_000144875.1\|4369416_4370337_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP015244.1\|WP_000039843.1\|4360723_4361458_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP015244.1\|WP_000372108.1\|4372980_4373889_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP015244.1\|WP_001173673.1\|4375317_4375923_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP015244.1\|WP_000956458.1\|4361722_4361875_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP015244.1\|WP_000490402.1\|4371691_4372729_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP015244.1\|WP_000568943.1\|4378005_4379055_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP015244.1\|WP_000085060.1\|4368041_4368788_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP015244.1\|WP_001246104.1\|4375972_4376296_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP015244.1\|WP_000281455.1\|4368769_4369420_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP015244.1\|WP_001084104.1\|4364865_4366428_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP015244.1\|WP_001090383.1\|4373890_4375318_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP015244.1\|WP_000246138.1\|4376819_4377530_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP015244.1\|WP_000029342.1\|4366424_4366964_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP015244.1\|WP_001233923.1\|4362068_4364768_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP015244.1\|WP_001219242.1\|4377529_4378009_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP015244.1\|WP_000517476.1\|4376489_4376801_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156

Protein	Function_ID	Function_description	E-value
NZ_CP015244.1\|WP_001295182.1\|4379035_4379797_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP015244.1\|WP_000206432.1\|4366975_4368031_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.78264e-154
NZ_CP015244.1\|WP_000063179.1\|4370336_4370630_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.5781e-65
NZ_CP015244.1\|WP_000144875.1\|4369416_4370337_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.70125e-157
NZ_CP015244.1\|WP_000039843.1\|4360723_4361458_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP015244.1\|WP_000372108.1\|4372980_4373889_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP015244.1\|WP_001173673.1\|4375317_4375923_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP015244.1\|WP_000956458.1\|4361722_4361875_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP015244.1\|WP_000490402.1\|4371691_4372729_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP015244.1\|WP_000568943.1\|4378005_4379055_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP015244.1\|WP_000085060.1\|4368041_4368788_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.60665e-47
NZ_CP015244.1\|WP_001246104.1\|4375972_4376296_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP015244.1\|WP_000281455.1\|4368769_4369420_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.33324e-91
NZ_CP015244.1\|WP_001084104.1\|4364865_4366428_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP015244.1\|WP_001090383.1\|4373890_4375318_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP015244.1\|WP_000246138.1\|4376819_4377530_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP015244.1\|WP_000029342.1\|4366424_4366964_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
NZ_CP015244.1\|WP_001233923.1\|4362068_4364768_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.23012e-179
NZ_CP015244.1\|WP_001219242.1\|4377529_4378009_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP015244.1\|WP_000517476.1\|4376489_4376801_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62

>NZ_CP015244.1|WP_000063179.1|4370336_4370630_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGKNRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP015244.1|WP_000144875.1|4369416_4370337_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NZ_CP015244.1|WP_000281455.1|4368769_4369420_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP015244.1|WP_000085060.1|4368041_4368788_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDTLRNAYQQYQDHFRKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP015244.1|WP_000206432.1|4366975_4368031_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>NZ_CP015244.1|WP_000029342.1|4366424_4366964_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP015244.1|WP_001084104.1|4364865_4366428_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAVWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALQSLEHAFQFGPDSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP015244.1|WP_001233923.1|4362068_4364768_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRCGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP015244.1|WP_000956458.1|4361722_4361875_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP015244.1|WP_000039843.1|4360723_4361458_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>NZ_CP015244.1|WP_000490402.1|4371691_4372729_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP015244.1|WP_000372108.1|4372980_4373889_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP015244.1|WP_001090383.1|4373890_4375318_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIRKDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP015244.1|WP_001173673.1|4375317_4375923_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP015244.1|WP_001246104.1|4375972_4376296_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP015244.1|WP_000517476.1|4376489_4376801_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP015244.1|WP_000246138.1|4376819_4377530_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP015244.1|WP_001219242.1|4377529_4378009_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP015244.1|WP_000568943.1|4378005_4379055_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP015244.1|WP_001295182.1|4379035_4379797_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015244_4	4.7\|4371123\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371123-4371154	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	29600-29631	6	0.812
NZ_CP015244_4	4.7\|4371123\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371123-4371154	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	88258-88289	6	0.812
NZ_CP015244_4	4.7\|4371123\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371123-4371154	32	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	201710-201741	7	0.781
NZ_CP015244_4	4.11\|4371367\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371367-4371398	32	AP014324	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, * SEQUENCING IN PROGRESS *	30389-30420	7	0.781
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1077804-1077835	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1081182-1081213	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1264658-1264689	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1083481-1083512	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1080184-1080215	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	909207-909238	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1059848-1059879	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1059871-1059902	8	0.75
NZ_CP015244_4	4.11\|4371367\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371367-4371398	32	NZ_CP014218	Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence	43450-43481	8	0.75
NZ_CP015244_4	4.11\|4371367\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371367-4371398	32	NZ_CP014173	Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence	7656-7687	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_KX426227	Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence	109155-109186	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP033130	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence	307562-307593	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP042557	Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence	123952-123983	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	219424-219455	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP048828	Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence	163282-163313	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP032285	Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence	233522-233553	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP042365	Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence	70779-70810	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_MK134375	Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence	87437-87468	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP038010	Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence	192432-192463	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP043053	Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence	122515-122546	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_MH220285	Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence	298889-298920	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_MH220287	Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence	295105-295136	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP043309	Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence	287363-287394	8	0.75
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_MH220286	Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence	239928-239959	8	0.75
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	45733-45764	9	0.719
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	92571-92602	9	0.719
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	AY526908	Bordetella phage BMP-1, complete genome	4333-4364	9	0.719
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NC_005357	Bordetella phage BPP-1, complete genome	4333-4364	9	0.719
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	AY526909	Bordetella phage BIP-1, complete genome	4333-4364	9	0.719
NZ_CP015244_4	4.11\|4371367\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371367-4371398	32	MN856013	Myoviridae sp. isolate 131, complete genome	19253-19284	9	0.719
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	MH697592	Mycobacterium phage Rando14, complete genome	21501-21532	10	0.688
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	KM363596	Mycobacteriophage Omnicron, complete genome	21601-21632	10	0.688
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	NC_023724	Mycobacterium phage Larva, complete genome	22682-22713	10	0.688
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	MF185717	Mycobacterium phage AlleyCat, complete genome	22814-22845	10	0.688
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	MF185719	Mycobacterium phage Edugator, complete genome	22814-22845	10	0.688
NZ_CP015244_4	4.8\|4371184\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371184-4371215	32	NZ_CP025433	Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence	97047-97078	10	0.688
NZ_CP015244_4	4.12\|4371428\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4371428-4371459	32	NZ_CP009059	Borreliella afzelii K78 plasmid lp54, complete sequence	24694-24725	10	0.688
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	MH651171	Mycobacterium phage Collard, complete genome	22841-22872	11	0.656
NZ_CP015244_4	4.3\|4370878\|32\|NZ_CP015244\|PILER-CR,CRISPRCasFinder,CRT	4370878-4370909	32	NC_028947	Mycobacterium phage Kratio, complete genome	22515-22546	11	0.656

1. spacer 4.7|4371123|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 6, identity: 0.812

ttaacgcgaaagcgtcggcggtca--gtcggcag	CRISPR spacer
ctaacccgaaagcgccggcggtcaccgccggc--	Protospacer
.**** ********.*********  *.****

2. spacer 4.7|4371123|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 6, identity: 0.812

ttaacgcgaaagcgtcggcggtca--gtcggcag	CRISPR spacer
ctaacccgaaagcgccggcggtcaccgccggc--	Protospacer
.**** ********.*********  *.****

3. spacer 4.7|4371123|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ttaacgcgaaagcgtcggcggtcagtcggcag	CRISPR spacer
gtcctgcgacagcgtcggcggtcaggcggccg	Protospacer
 *  .**** *************** **** *

4. spacer 4.11|4371367|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to AP014324 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

cgatgatgtaataattagagcaga-atccagtt	CRISPR spacer
tgatgatgtaactattagagcagatatacaaa-	Protospacer
.**********. *********** ** **.

5. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

6. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

7. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

8. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

9. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

10. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

11. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

12. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

13. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

14. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

15. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

16. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
gaggatcgggcgccagcctgcacgctgctggt	Protospacer
**. ******.********* ****** . *

17. spacer 4.11|4371367|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 8, identity: 0.75

cgatgatgtaataattagagcaga---atccagtt	CRISPR spacer
agatgatgtaacaattaaagcagaaggatctg---	Protospacer
 **********.*****.******   ***..

18. spacer 4.11|4371367|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 8, identity: 0.75

cgatgatgtaataattagagcaga---atccagtt	CRISPR spacer
agatgatgtaacaattaaagcagaaggatctg---	Protospacer
 **********.*****.******   ***..

19. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

20. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033130 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

21. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042557 (Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

22. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

23. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048828 (Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

24. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032285 (Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

25. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042365 (Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

26. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK134375 (Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

27. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038010 (Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

28. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043053 (Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

29. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220285 (Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

30. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220287 (Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

31. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043309 (Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

32. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220286 (Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
aaaaatttaaaatcattttaacttaaaataat	Protospacer
 ***************** *.***. ** * .

33. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
caacatcgggtggcagcctggacgtgtcgcgc	Protospacer
 **.******** ***********.    **

34. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 9, identity: 0.719

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
caaaccggggtgccagcctcgatgctggccat	Protospacer
 **  . ************ **.*******.

35. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

----gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
tccacgat----ggtgccagccttgatgctggccgt	Protospacer
     .**    *********** **.********

36. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

----gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
tccacgat----ggtgccagccttgatgctggccgt	Protospacer
     .**    *********** **.********

37. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

----gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
tccacgat----ggtgccagccttgatgctggccgt	Protospacer
     .**    *********** **.********

38. spacer 4.11|4371367|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to MN856013 (Myoviridae sp. isolate 131, complete genome) position: , mismatch: 9, identity: 0.719

cgatgatgtaataattagagcagaatccagtt	CRISPR spacer
aaatgatgtaaaaattacagcagaaatcggca	Protospacer
 .********* ***** ******* .*.*.

39. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to MH697592 (Mycobacterium phage Rando14, complete genome) position: , mismatch: 10, identity: 0.688

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaactgactgctgcgcatacgcagacgaca	Protospacer
  . ..********.** ************

40. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to KM363596 (Mycobacteriophage Omnicron, complete genome) position: , mismatch: 10, identity: 0.688

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaactgactgctgcgcatacgcagacgaca	Protospacer
  . ..********.** ************

41. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NC_023724 (Mycobacterium phage Larva, complete genome) position: , mismatch: 10, identity: 0.688

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaactgactgctgcgcatacgcagacgaca	Protospacer
  . ..********.** ************

42. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to MF185717 (Mycobacterium phage AlleyCat, complete genome) position: , mismatch: 10, identity: 0.688

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaactgactgctgcgcatacgcagacgaca	Protospacer
  . ..********.** ************

43. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to MF185719 (Mycobacterium phage Edugator, complete genome) position: , mismatch: 10, identity: 0.688

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaactgactgctgcgcatacgcagacgaca	Protospacer
  . ..********.** ************

44. spacer 4.8|4371184|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 10, identity: 0.688

gaatatcgggtgccagcctggacgctggccga	CRISPR spacer
cagaccggggtgccagcctcgatgctggccat	Protospacer
 *.  . ************ **.*******.

45. spacer 4.12|4371428|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.688

caaaatttaaaatcatttaagcttgtaaaacc	CRISPR spacer
atttttttaaaatcatttaatcttctaaaggt	Protospacer
     *************** *** ****. .

46. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to MH651171 (Mycobacterium phage Collard, complete genome) position: , mismatch: 11, identity: 0.656

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaaccgactgctgcgcatacgcagacgaca	Protospacer
  . ...*******.** ************

47. spacer 4.3|4370878|32|NZ_CP015244|PILER-CR,CRISPRCasFinder,CRT matches to NC_028947 (Mycobacterium phage Kratio, complete genome) position: , mismatch: 11, identity: 0.656

tattgttgactgctacgaatacgcagacgagc	CRISPR spacer
gtcaaccgactgctgcgcatacgcagacgaca	Protospacer
  . ...*******.** ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

560444 : 626617

Enterobacteria_phage(54.39%)

protease,tRNA,terminase,lysis,transposase,tail,head,capsid,portal,integrase

attL 570606:570652|attR 618092:618138

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|560444_561830_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143541.1\|561865_562387_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|562494_562707_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|562708_563575_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_001367720.1\|564055_564598_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988366.1\|564817_565510_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001356128.1\|565540_568150_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691050.1\|568162_569170_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250422.1\|569180_569696_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805435.1\|569698_570331_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
570606:570652	attL	NA	NA	NA	NA
WP_001299447.1\|570665_571829_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
WP_000446905.1\|571684_572056_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_000488407.1\|572027_572306_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763385.1\|572353_572572_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_001386642.1\|572670_572952_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_000129285.1\|572962_573520_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	2.0e-61	62.3
WP_000682319.1\|573512_573674_-	DUF1317 family protein	A0A0P0ZAS9	Stx2-converting_phage	9.1e-23	100.0
WP_000186811.1\|573670_574351_-	YqaJ viral recombinase family protein	A0A0N6WET1	Escherichia_phage	4.6e-132	99.6
WP_000100847.1\|574347_575133_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995439.1\|575138_575435_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_122993299.1\|575510_575801_-	hypothetical protein	K7P6H3	Enterobacteria_phage	3.2e-26	82.4
WP_000340376.1\|576194_577058_-	hypothetical protein	M9NYX6	Enterobacteria_phage	1.8e-93	62.1
WP_000858975.1\|577124_577814_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|577918_578149_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182891.1\|578218_578758_+	hypothetical protein	K7PJT7	Enterobacteria_phage	6.8e-62	67.6
WP_001376316.1\|578844_579774_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	6.1e-111	68.4
WP_000788797.1\|579770_580472_+	hypothetical protein	M1FJ72	Enterobacteria_phage	3.2e-128	98.3
WP_000145915.1\|580468_580771_+	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_001089797.1\|580838_581171_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_032252941.1\|581262_581370_+	hypothetical protein	NA	NA	NA	NA
WP_000709083.1\|581427_582954_+	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
WP_000338662.1\|583065_583389_+	hypothetical protein	NA	NA	NA	NA
WP_099205817.1\|583563_584346_+	hypothetical protein	NA	NA	NA	NA
WP_072097297.1\|584440_584542_+	hypothetical protein	NA	NA	NA	NA
WP_001053027.1\|584538_584994_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	2.2e-61	67.5
WP_000224914.1\|584993_585164_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774499.1\|585156_585447_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.3e-46	91.7
WP_001099712.1\|585443_585806_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971068.1\|585802_585943_+	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
WP_001204791.1\|586028_586412_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737283.1\|586601_587699_-	porin	Q1MVN1	Enterobacteria_phage	4.8e-155	76.3
WP_000839596.1\|588287_588503_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135277.1\|588502_589000_+	lysozyme	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_001228695.1\|589216_589399_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738421.1\|589489_589783_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001415975.1\|590142_590337_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
WP_000453566.1\|590725_591271_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_001027292.1\|591245_593171_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	100.0
WP_000198149.1\|593167_593374_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001367714.1\|593370_594972_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.0e-310	99.4
WP_000123339.1\|594952_596272_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	5.3e-233	98.4
WP_001355467.1\|596281_596614_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.4e-54	99.1
WP_000063254.1\|596669_597695_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.8e-189	98.2
WP_000158875.1\|597736_598132_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
WP_000785280.1\|598143_598497_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
WP_099205819.1\|598508_599087_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.1e-78	96.9
WP_000683128.1\|599083_599479_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
WP_001367716.1\|599486_600227_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	5.6e-131	98.8
WP_000479142.1\|600242_600665_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.1e-70	96.4
WP_000459458.1\|600646_601081_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_000840260.1\|601073_603635_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	89.3
WP_000847362.1\|603631_603961_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	1.4e-57	98.2
WP_001152652.1\|603960_604659_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.1e-131	98.3
WP_000194779.1\|604664_605408_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_000090915.1\|605344_605977_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	7.6e-97	99.0
WP_000515165.1\|606037_609436_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	90.3
WP_001230375.1\|609502_610102_+	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	5.7e-110	98.5
WP_024177291.1\|610166_613193_+\|tail	tail protein	U5N099	Enterobacteria_phage	3.6e-67	81.4
WP_000885570.1\|613192_613777_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.6e-103	94.8
WP_000239881.1\|613831_614500_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937500.1\|614556_614862_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226374.1\|615044_616529_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|616715_617669_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001224602.1\|619124_620015_-	DUF4434 family protein	NA	NA	NA	NA
618092:618138	attR	NA	NA	NA	NA
WP_000662373.1\|620015_622988_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000383951.1\|622974_625212_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420935.1\|625480_626617_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1224359 : 1325977

134

Escherichia_phage(33.01%)

protease,tRNA,plate,terminase,lysis,holin,tail,head,capsid,portal,integrase

attL 1222227:1222244|attR 1324030:1324047

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1222227:1222244	attL	NA	NA	NA	NA
WP_099205840.1\|1224359_1225478_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.9e-82	43.6
WP_000003742.1\|1225446_1225716_-	excisionase	NA	NA	NA	NA
WP_099205842.1\|1225777_1228180_-	exonuclease	V5UQJ3	Shigella_phage	4.9e-176	58.6
WP_000092783.1\|1228272_1228461_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450221.1\|1228457_1228646_-	cell division inhibitor	NA	NA	NA	NA
WP_000559919.1\|1229174_1229690_+	hypothetical protein	NA	NA	NA	NA
WP_000380318.1\|1229803_1229956_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_032211256.1\|1230233_1230521_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001367155.1\|1230521_1230713_-	hypothetical protein	NA	NA	NA	NA
WP_033815696.1\|1230681_1231143_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.2e-09	55.4
WP_000448216.1\|1231162_1231534_-	hypothetical protein	NA	NA	NA	NA
WP_021577226.1\|1231636_1231918_+	hypothetical protein	NA	NA	NA	NA
WP_000693827.1\|1231921_1232347_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_052909572.1\|1232415_1233447_+	phage replisome organizer	A0A0U2RT81	Escherichia_phage	8.4e-85	69.1
WP_001379651.1\|1233478_1233901_+	replication protein	A0A0U2JGJ0	Escherichia_phage	5.7e-72	90.0
WP_047082289.1\|1233934_1234651_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.7e-73	62.1
WP_000017341.1\|1234647_1234965_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.4e-35	75.0
WP_053294093.1\|1234961_1235267_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.7e-49	92.1
WP_022581296.1\|1235414_1235597_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	3.8e-25	93.3
WP_099205844.1\|1235762_1236278_+	hypothetical protein	A0A076GCN9	Escherichia_phage	1.1e-37	78.6
WP_001398985.1\|1236511_1236724_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.4e-16	67.1
WP_001341173.1\|1236890_1237163_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.9e-12	50.8
WP_032284906.1\|1237164_1238214_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	7.7e-110	54.6
WP_000904388.1\|1238226_1238601_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.8e-35	63.6
WP_000762903.1\|1238597_1239419_+	hypothetical protein	K7P7B9	Enterobacteria_phage	2.9e-80	59.7
WP_000917741.1\|1239645_1239843_+	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_064579151.1\|1239993_1241052_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.1e-208	99.7
WP_001365055.1\|1241434_1242394_+	Shiga toxin Stx2d subunit A	Q6DWN9	Enterobacteria_phage	1.6e-175	100.0
WP_000738072.1\|1242405_1242675_+	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_099205848.1\|1243539_1245477_+	SASA family carbohydrate esterase	S5MDQ7	Escherichia_phage	0.0e+00	94.3
WP_000143458.1\|1245614_1245794_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|1245834_1246080_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284510.1\|1246157_1246373_+\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_001457151.1\|1246376_1246862_+	hypothetical protein	NA	NA	NA	NA
WP_053294090.1\|1247373_1247907_+	lysozyme	Q6H9V6	Enterobacteria_phage	2.3e-94	91.5
WP_053294089.1\|1248180_1248876_+	hypothetical protein	Q5MBW0	Stx1-converting_phage	1.8e-123	98.7
WP_001280928.1\|1248970_1249102_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	4.5e-12	95.3
WP_071974579.1\|1249324_1249531_+	hypothetical protein	H6WRZ6	Salmonella_phage	4.6e-11	63.2
WP_000735655.1\|1249595_1249820_+	hypothetical protein	NA	NA	NA	NA
WP_001405844.1\|1250307_1250814_+	DNA-packaging protein	O64316	Escherichia_phage	1.6e-33	48.5
WP_001499025.1\|1250785_1252714_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.7e-259	65.7
WP_000259002.1\|1252697_1252904_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_024175322.1\|1252900_1254493_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.0e-187	61.6
WP_099205850.1\|1254482_1255988_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.6e-100	52.6
WP_033811013.1\|1256024_1256372_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.0e-22	58.1
WP_099205852.1\|1256429_1257458_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.1e-113	61.9
WP_047081403.1\|1257509_1257893_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001204531.1\|1257885_1258239_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.8e-40	69.2
WP_000974993.1\|1258254_1258830_+\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-50	57.8
WP_000683075.1\|1258826_1259222_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.2e-57	80.9
WP_052903742.1\|1259229_1259979_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	3.1e-129	93.2
WP_001299690.1\|1259994_1260426_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_072032653.1\|1260452_1260866_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	83.8
WP_099205854.1\|1260846_1263426_+\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	85.8
WP_000847280.1\|1263422_1263752_+\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_047083320.1\|1263751_1264450_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	5.2e-131	97.8
WP_099205856.1\|1264460_1265204_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	7.0e-142	94.3
WP_122994293.1\|1265149_1265782_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	8.7e-101	91.0
WP_099205858.1\|1266022_1269709_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	87.9
WP_000078853.1\|1269907_1270048_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_099205860.1\|1270192_1271851_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	2.0e-72	53.6
WP_000438829.1\|1271860_1272073_+	hypothetical protein	NA	NA	NA	NA
WP_064579209.1\|1272084_1272759_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	5.6e-114	89.7
WP_022581964.1\|1272922_1273252_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_000799399.1\|1273417_1274281_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531594.1\|1274264_1275401_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000359460.1\|1275650_1276880_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1277025_1278147_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000735412.1\|1278222_1279683_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1279682_1280354_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|1280521_1281892_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|1281895_1282537_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|1282572_1283679_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476089.1\|1283732_1284194_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248691.1\|1284203_1284857_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|1285028_1286279_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_021519677.1\|1286404_1287055_-	hypothetical protein	NA	NA	NA	NA
WP_001095712.1\|1287063_1288116_-	DUF262 domain-containing protein	A0A0M4RT01	Citrobacter_phage	3.9e-05	24.8
WP_000741313.1\|1288215_1289346_-\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	1.3e-123	61.0
WP_001527050.1\|1289326_1289572_-	phage excisionase	NA	NA	NA	NA
WP_000008253.1\|1289627_1290164_-	HD family hydrolase	Q8SBG0	Shigella_phage	4.8e-92	93.8
WP_000081267.1\|1290291_1291116_-	DUF2303 family protein	U5P439	Shigella_phage	2.3e-149	99.6
WP_000135682.1\|1291181_1291544_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_001307125.1\|1291823_1292165_+	hypothetical protein	NA	NA	NA	NA
WP_001005199.1\|1292102_1292411_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.0e-09	80.0
WP_000389078.1\|1292616_1293507_+	hypothetical protein	U3PB51	Vibrio_phage	4.5e-34	31.6
WP_000853320.1\|1293489_1294176_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	2.7e-39	42.0
WP_000187185.1\|1294311_1294560_+	chaperone TorD	NA	NA	NA	NA
WP_000515829.1\|1294582_1295140_+	protein YmfL	S5FXP0	Shigella_phage	1.1e-96	96.2
WP_001250266.1\|1295315_1295495_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	68.5
WP_000104949.1\|1295484_1296426_+	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	3.3e-144	99.7
WP_001307127.1\|1296422_1296917_+	PerC family transcriptional regulator	U5P0U0	Shigella_phage	5.6e-87	97.0
WP_001367868.1\|1296916_1297570_+	phage N-6-adenine-methyltransferase	K7PGU4	Enterobacteria_phage	4.7e-126	98.2
WP_000210174.1\|1297566_1297893_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	3.5e-53	99.1
WP_000767113.1\|1297889_1298279_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061385.1\|1298298_1299108_+	KilA-N domain-containing protein	Q8SBE6	Shigella_phage	6.9e-151	98.1
WP_001307130.1\|1299115_1300105_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-193	99.4
WP_001047125.1\|1300118_1300871_+	antitermination protein	Q8SBE4	Shigella_phage	2.2e-135	98.0
WP_023154804.1\|1301074_1301254_+	hypothetical protein	NA	NA	NA	NA
WP_000544528.1\|1301477_1301783_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001180495.1\|1301769_1302246_+	glycoside hydrolase family protein	K7PKX1	Enterobacterial_phage	1.7e-85	96.2
WP_001307131.1\|1302242_1302680_+\|lysis	lysis protein	K7PJY1	Enterobacterial_phage	6.5e-71	98.6
WP_000520336.1\|1303438_1303819_+	hypothetical protein	NA	NA	NA	NA
WP_000958719.1\|1303835_1304414_+	hypothetical protein	NA	NA	NA	NA
WP_001135206.1\|1304553_1304904_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	5.0e-66	100.0
WP_000929175.1\|1305029_1305524_+\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	3.9e-88	99.4
WP_122993597.1\|1305757_1307254_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	4.3e-300	99.8
WP_001056733.1\|1307265_1307448_+	hypothetical protein	S5FXQ9	Shigella_phage	2.9e-25	98.3
WP_000466236.1\|1307447_1308689_+\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-241	99.0
WP_001193631.1\|1308666_1309317_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_000257507.1\|1309331_1310537_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.8e-224	100.0
WP_000601357.1\|1310585_1310786_+	hypothetical protein	S5FNU1	Shigella_phage	1.4e-25	95.5
WP_000927720.1\|1310788_1311112_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	7.4e-56	98.1
WP_000702388.1\|1311108_1311519_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000213502.1\|1311493_1312000_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000779292.1\|1311996_1312557_+	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
WP_000497751.1\|1312565_1312736_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000155712.1\|1312719_1314216_+\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
WP_000090998.1\|1314215_1314572_+	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000661052.1\|1314571_1314847_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	7.5e-41	98.8
WP_000807185.1\|1314981_1316817_+\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	5.9e-307	98.2
WP_001307133.1\|1316877_1318206_+	DNA circularization protein	Q8SBG8	Shigella_phage	1.1e-246	99.1
WP_000999517.1\|1318202_1319282_+	hypothetical protein	Q8SBG7	Shigella_phage	2.6e-206	99.2
WP_001259079.1\|1319281_1319830_+\|plate	phage baseplate assembly protein	Q8SBG6	Shigella_phage	2.3e-97	100.0
WP_000424732.1\|1319829_1320255_+	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_000785334.1\|1320241_1321300_+\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	2.0e-198	97.4
WP_000383561.1\|1321290_1321875_+	YmfQ family protein	O22003	Shigella_phage	5.9e-112	98.5
WP_099205862.1\|1322249_1322516_+	hypothetical protein	NA	NA	NA	NA
WP_000416464.1\|1322518_1322950_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	9.6e-43	73.7
WP_001057698.1\|1322921_1323524_-\|tail	tail fiber assembly protein	A0A0F7LDQ5	Escherichia_phage	7.5e-94	87.5
WP_044721967.1\|1323523_1324054_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	4.4e-98	96.6
1324030:1324047	attR	NA	NA	NA	NA
WP_000905000.1\|1324083_1324638_+	site-specific DNA recombinase	A0A1S6L009	Salmonella_phage	4.4e-88	88.9
WP_000557907.1\|1324744_1325578_+	HNH endonuclease	NA	NA	NA	NA
WP_000943926.1\|1325812_1325977_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-24	100.0

DBSCAN-SWA_3

1427652 : 1495545

Escherichia_phage(26.0%)

protease,terminase,lysis,holin,tail,head,capsid,integrase

attL 1427489:1427516|attR 1481740:1481767

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1427489:1427516	attL	NA	NA	NA	NA
WP_099205867.1\|1427652_1428783_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	1.8e-104	51.7
WP_000113183.1\|1428760_1429009_-	excisionase	NA	NA	NA	NA
WP_099205869.1\|1429073_1431545_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.7e-54	56.0
WP_099205871.1\|1431640_1431829_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|1431825_1432014_-	cell division inhibitor	NA	NA	NA	NA
WP_001365839.1\|1432798_1433167_-	hypothetical protein	NA	NA	NA	NA
WP_000380317.1\|1433178_1433331_-	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001003380.1\|1433520_1433928_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	5.5e-24	45.4
WP_000476991.1\|1434005_1434233_+	transcriptional regulator	NA	NA	NA	NA
WP_000705131.1\|1434216_1434738_+	hypothetical protein	NA	NA	NA	NA
WP_033811891.1\|1434718_1435708_+	phage O protein family	U5P0A0	Shigella_phage	3.9e-55	61.2
WP_047083545.1\|1435714_1436455_+	ATP-binding protein	A0A088CBP4	Shigella_phage	1.2e-112	82.3
WP_099205874.1\|1436484_1437246_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.2e-74	61.9
WP_000215512.1\|1437305_1437491_+	hypothetical protein	NA	NA	NA	NA
WP_000211993.1\|1437842_1438394_+	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000882662.1\|1438608_1438821_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_000042395.1\|1438923_1439241_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_052327139.1\|1439829_1440057_+	hypothetical protein	NA	NA	NA	NA
WP_032347855.1\|1440110_1440380_+	hypothetical protein	I6PCV7	Cronobacter_phage	3.6e-11	50.8
WP_001265189.1\|1440381_1441431_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	3.4e-110	54.3
WP_000904136.1\|1441443_1441806_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	61.9
WP_001064918.1\|1441798_1442464_+	antiterminator	I6PDF8	Cronobacter_phage	1.6e-60	52.0
WP_000342738.1\|1442717_1443431_+	hypothetical protein	NA	NA	NA	NA
WP_000917733.1\|1443604_1443802_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	96.9
WP_032308170.1\|1443953_1445012_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	4.0e-207	99.1
WP_000271629.1\|1445491_1445920_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000382065.1\|1446616_1447342_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_099205876.1\|1449204_1451169_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	3.5e-297	79.2
WP_000143459.1\|1451303_1451483_+	DUF1378 family protein	A0A088CBQ0	Shigella_phage	2.2e-25	100.0
WP_001290208.1\|1451523_1451769_+	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	8.5e-20	100.0
WP_000284490.1\|1451846_1452062_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_001041949.1\|1452065_1452857_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_001092875.1\|1453368_1453902_+	lysozyme	Q08J98	Stx2-converting_phage	1.1e-99	95.5
WP_072024677.1\|1454058_1454241_+	hypothetical protein	NA	NA	NA	NA
WP_024210595.1\|1454389_1454857_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	3.6e-67	87.7
WP_000881332.1\|1454968_1455583_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	1.1e-63	68.6
WP_000828070.1\|1455919_1456246_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|1456377_1456578_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_047083313.1\|1456619_1456985_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	5.1e-61	95.0
WP_000958387.1\|1457273_1457837_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_001376400.1\|1457833_1459495_+\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	0.0e+00	99.8
WP_000172990.1\|1459558_1461496_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|1461540_1461762_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000125990.1\|1464288_1464615_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001029274.1\|1464624_1464975_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	6.0e-59	99.1
WP_000573358.1\|1464971_1465418_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	2.0e-75	99.3
WP_000133383.1\|1465414_1465759_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_001275432.1\|1465825_1466542_+\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	6.2e-127	99.6
WP_000710934.1\|1466556_1466931_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	7.8e-65	99.2
WP_122993267.1\|1467026_1467236_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_000212965.1\|1467283_1470526_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	89.2
WP_000343411.1\|1470518_1470860_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
WP_001367880.1\|1470859_1471558_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	3.4e-130	97.0
WP_032308177.1\|1471568_1472312_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	1.9e-147	96.4
WP_000246333.1\|1472209_1472854_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.3e-88	73.9
WP_099205878.1\|1473764_1477460_+	DUF1983 domain-containing protein	Q6H9T2	Enterobacteria_phage	0.0e+00	84.9
WP_001270056.1\|1477528_1478152_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	2.0e-65	59.9
WP_000216448.1\|1478301_1479570_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	6.5e-55	99.1
WP_001049910.1\|1479638_1480310_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	8.1e-105	82.5
WP_001079509.1\|1481917_1482424_-	ferritin-like domain-containing protein	NA	NA	NA	NA
1481740:1481767	attR	NA	NA	NA	NA
WP_001056491.1\|1482469_1482970_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1483055_1483235_-	general stress protein	NA	NA	NA	NA
WP_000443056.1\|1483615_1484422_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|1484421_1485615_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001297118.1\|1485626_1486985_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_000763511.1\|1486988_1488584_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194591.1\|1488583_1490146_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1490237_1490282_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1490419_1491301_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1491297_1491918_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1492018_1492891_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278904.1\|1492930_1493521_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559283.1\|1493517_1494276_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	8.8e-07	23.4
WP_000422039.1\|1494495_1495545_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_4

2048628 : 2146437

104

Escherichia_phage(35.38%)

protease,tRNA,terminase,transposase,holin,tail,portal,integrase

attL 2068501:2068516|attR 2142128:2142143

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984517.1\|2048628_2049510_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001055776.1\|2049701_2051750_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.4e-85	33.4
WP_000431367.1\|2051769_2052468_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001043882.1\|2052564_2053062_-	GAF domain-containing protein	NA	NA	NA	NA
WP_001207283.1\|2053191_2054475_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_001297532.1\|2054443_2057077_+	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_000057022.1\|2057156_2058596_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001295499.1\|2058713_2058950_+	DUF1480 family protein	NA	NA	NA	NA
WP_001296140.1\|2059054_2059246_+	YebW family protein	NA	NA	NA	NA
WP_000812724.1\|2059246_2059903_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.1e-56	50.2
WP_000976492.1\|2060298_2060640_-	YebY family protein	NA	NA	NA	NA
WP_000879280.1\|2060652_2061525_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000204699.1\|2061528_2061903_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|2062041_2062272_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_000011658.1\|2062373_2063030_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_000944256.1\|2063053_2063716_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.0e-07	41.6
WP_000936923.1\|2063712_2065773_-	oligopeptidase B	NA	NA	NA	NA
WP_000024745.1\|2065981_2066641_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001295500.1\|2066967_2067324_-	protein YebF	NA	NA	NA	NA
WP_000257738.1\|2067390_2067681_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_000173474.1\|2067814_2068993_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
2068501:2068516	attL	NA	NA	NA	NA
WP_000800512.1\|2069048_2069690_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_001069469.1\|2069726_2071538_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301730.1\|2071772_2073248_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	5.8e-79	37.5
WP_001056706.1\|2073585_2074455_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000091148.1\|2074582_2076025_+	pyruvate kinase	NA	NA	NA	NA
WP_000448381.1\|2076155_2077127_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001184045.1\|2077246_2078569_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_001342995.1\|2078584_2079517_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000202996.1\|2079595_2080351_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.3e-18	28.3
WP_000571479.1\|2080347_2081133_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000568519.1\|2081279_2082290_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580328.1\|2082298_2082910_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_001386853.1\|2083048_2083114_-	hypothetical protein	NA	NA	NA	NA
WP_001024917.1\|2083184_2083787_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|2083788_2084310_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907234.1\|2084344_2085085_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001300367.1\|2085113_2085566_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258662.1\|2085683_2087456_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891620.1\|2087765_2088332_+	hydrolase	NA	NA	NA	NA
WP_001261926.1\|2088649_2088898_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-33	86.6
WP_000216450.1\|2089272_2091231_-\|tail	tail protein	S5MDN9	Escherichia_phage	4.1e-173	97.8
WP_001270059.1\|2091382_2092006_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	9.0e-66	59.9
WP_099205896.1\|2092074_2095770_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	81.5
WP_128972693.1\|2096685_2097318_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.7e-99	89.5
WP_001367886.1\|2097263_2098007_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	9.2e-150	98.0
WP_001370900.1\|2098017_2098716_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	3.1e-131	97.8
WP_000847280.1\|2098715_2099045_-\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_064577958.1\|2099041_2101648_-\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	87.1
WP_047090811.1\|2101637_2102042_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	4.5e-42	77.5
WP_000479069.1\|2102068_2102500_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.9e-41	65.7
WP_000235128.1\|2102519_2103269_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	3.6e-130	94.4
WP_000682716.1\|2103276_2103675_-\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_047082262.1\|2103687_2104311_-\|tail	tail protein	Q8VNN3	Enterobacteria_phage	7.5e-105	99.0
WP_001281346.1\|2104313_2104595_-	DNA breaking-rejoining protein	S5MDP9	Escherichia_phage	7.9e-46	97.8
WP_001097065.1\|2104587_2104914_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_157774855.1\|2105001_2106981_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.1
WP_000974549.1\|2106970_2108473_-\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	1.7e-288	99.6
WP_000102416.1\|2108472_2108685_-	hypothetical protein	S5MBY8	Escherichia_phage	8.6e-29	97.1
WP_047090813.1\|2108681_2110805_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	99.9
WP_000348565.1\|2110801_2111278_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
WP_012816791.1\|2111793_2111979_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000675931.1\|2112200_2112314_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_001092905.1\|2112535_2113069_-	lysozyme	G9L6J6	Escherichia_phage	6.2e-100	96.0
WP_001367839.1\|2113105_2113663_-	hypothetical protein	Q08JA0	Stx2-converting_phage	2.1e-50	83.5
WP_000284510.1\|2113666_2113882_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_099205898.1\|2114377_2116351_-	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	1.5e-300	78.5
WP_001398907.1\|2116594_2116918_+	anti-adapter protein IraM	Q20GJ2	Phage_258-320	2.0e-61	100.0
WP_000738080.1\|2117215_2117485_-	Shiga toxin Stx2c subunit B	Q5TJL5	Enterobacteria_phage	2.1e-43	100.0
WP_001376437.1\|2117496_2118456_-	Shiga toxin Stx2d subunit A	Q6DWN9	Enterobacteria_phage	3.6e-175	99.7
WP_000024334.1\|2118838_2119897_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.0e-206	98.6
WP_000917741.1\|2120047_2120245_-	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_001204809.1\|2120460_2120841_-	antitermination protein Q	S5M7R9	Escherichia_phage	1.4e-66	99.2
WP_001202275.1\|2120858_2121848_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	98.8
WP_001065348.1\|2121899_2122157_-	hypothetical protein	Q8W639	Enterobacteria_phage	6.2e-21	69.7
WP_000203854.1\|2122153_2123554_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	2.9e-245	92.4
WP_000988196.1\|2123550_2124429_-	ATP-binding protein	Q8W641	Enterobacteria_phage	2.0e-140	96.0
WP_000095569.1\|2124439_2125366_-	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	4.3e-157	93.2
WP_000618002.1\|2125362_2125587_-	hypothetical protein	A0A1C9II64	Salmonella_phage	9.8e-15	52.1
WP_000636504.1\|2125583_2126435_-	peptidase	K7PLX4	Enterobacteria_phage	1.3e-123	83.6
WP_000794367.1\|2126431_2127256_-	transporter	Q8W644	Enterobacteria_phage	1.0e-157	99.6
WP_001090263.1\|2127308_2128016_-	DNA-binding protein	Q8W645	Enterobacteria_phage	5.7e-109	83.8
WP_000944728.1\|2128097_2128331_-	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	1.2e-28	77.0
WP_000800141.1\|2128487_2129177_+	helix-turn-helix transcriptional regulator	A0A1B5FPF4	Escherichia_phage	4.0e-115	88.6
WP_000387833.1\|2129324_2130017_+	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	1.0e-38	63.6
WP_000147367.1\|2130022_2130223_+	hypothetical protein	NA	NA	NA	NA
WP_000553977.1\|2130420_2130603_+	hypothetical protein	Q8W652	Enterobacteria_phage	2.9e-09	52.7
WP_001367862.1\|2130608_2131181_+	hypothetical protein	Q8W653	Enterobacteria_phage	3.3e-75	68.1
WP_000720013.1\|2131550_2132378_+	hypothetical protein	Q8W654	Enterobacteria_phage	1.6e-131	99.6
WP_001367902.1\|2132418_2132790_+	DUF5406 family protein	Q8W655	Enterobacteria_phage	4.2e-63	95.9
WP_000459914.1\|2132821_2133064_+	DUF4222 domain-containing protein	Q8W656	Enterobacteria_phage	2.4e-35	93.8
WP_001030141.1\|2133067_2133202_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	6.0e-20	90.9
WP_001193437.1\|2133220_2133475_+	DUF1233 family excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000063652.1\|2133508_2134795_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	8.2e-247	97.0
WP_096096185.1\|2134811_2135576_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.0e-72	99.2
WP_000252980.1\|2135628_2136024_+	hypothetical protein	NA	NA	NA	NA
WP_000019588.1\|2136064_2136808_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564742.1\|2136804_2137776_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000399589.1\|2137969_2138950_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000176841.1\|2139219_2141649_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214304.1\|2141673_2142774_-	cytochrome c	NA	NA	NA	NA
2142128:2142143	attR	NA	NA	NA	NA
WP_001185741.1\|2143161_2143908_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001300190.1\|2143921_2144488_-	VOC family protein	NA	NA	NA	NA
WP_001025326.1\|2144703_2146437_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7

DBSCAN-SWA_5

2379782 : 2389224

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|2379782_2380919_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001326004.1\|2380915_2382916_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
WP_001295429.1\|2383040_2383502_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|2383542_2384013_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2384059_2384779_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2384775_2386461_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|2386682_2387414_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216961.1\|2387473_2387581_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|2387561_2388293_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569325.1\|2388297_2389224_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_6

2925338 : 3024674

Enterobacteria_phage(54.0%)

protease,tRNA,plate,terminase,lysis,holin,tail,head,capsid,portal,integrase

attL 2990414:2990460|attR 3021886:3021932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000187025.1\|2925338_2926439_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_000806411.1\|2926478_2926838_-	YijD family membrane protein	NA	NA	NA	NA
WP_001309117.1\|2926837_2927488_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_001120810.1\|2927818_2929219_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_001025939.1\|2929201_2930119_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
WP_000382183.1\|2930370_2931654_-	MFS transporter	NA	NA	NA	NA
WP_000690934.1\|2931720_2932935_-	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	5.9e-45	28.6
WP_001230081.1\|2933433_2934807_-	argininosuccinate lyase	NA	NA	NA	NA
WP_001302318.1\|2934867_2935644_-	acetylglutamate kinase	NA	NA	NA	NA
WP_000935370.1\|2935651_2936656_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_001295506.1\|2936809_2937961_+	acetylornithine deacetylase	NA	NA	NA	NA
WP_001005579.1\|2938312_2940964_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_099205925.1\|2941146_2942880_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA
WP_000274608.1\|2943094_2943946_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000323849.1\|2943932_2944274_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_000204101.1\|2944275_2945154_-	[formate-C-acetyltransferase]-activating enzyme	NA	NA	NA	NA
WP_000184883.1\|2945119_2947417_-	formate C-acetyltransferase	A0A1S6UAD4	Serratia_phage	4.6e-06	48.1
WP_000161265.1\|2947467_2947788_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_001004446.1\|2947802_2948882_-	PTS fructose transporter subunit EIIC	NA	NA	NA	NA
WP_001174095.1\|2949190_2951692_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	1.0e-11	26.9
WP_000424838.1\|2951703_2952366_+	fructose-6-phosphate aldolase	A0A0E3F0E2	Synechococcus_phage	5.5e-29	34.6
WP_000374004.1\|2952376_2953480_+	bifunctional L-1,2-propanediol dehydrogenase/glycerol dehydrogenase	NA	NA	NA	NA
WP_000647882.1\|2953754_2954372_+	DUF1287 domain-containing protein	NA	NA	NA	NA
WP_001297632.1\|2954398_2955304_-	cystine transporter YijE	NA	NA	NA	NA
WP_001297636.1\|2955397_2957578_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_000007523.1\|2957906_2958797_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_000110772.1\|2959145_2961578_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_001352864.1\|2961580_2962741_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_000852812.1\|2963017_2963335_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_000702307.1\|2963394_2964003_+	YiiX family permuted papain-like enzyme	NA	NA	NA	NA
WP_099205927.1\|2965234_2969419_-	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	4.7e-25	32.5
WP_000710769.1\|2969578_2969791_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_001298972.1\|2969993_2972192_+	primosomal protein N'	NA	NA	NA	NA
WP_000644904.1\|2972347_2973373_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_000068834.1\|2973464_2974424_+	cell division protein FtsN	NA	NA	NA	NA
WP_000208242.1\|2974516_2975047_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293343.1\|2975056_2976388_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_001307494.1\|2976454_2977381_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872908.1\|2977473_2977959_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001296623.1\|2978043_2978289_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084268.1\|2978714_2979560_+	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_000136788.1\|2979582_2981091_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250644.1\|2981225_2982236_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796320.1\|2982332_2983079_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000323556.1\|2983083_2983512_-	universal stress protein UspD	NA	NA	NA	NA
WP_000655986.1\|2983538_2983838_-	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000155254.1\|2984049_2984490_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802233.1\|2984590_2985190_+	YiiQ family protein	NA	NA	NA	NA
WP_001216325.1\|2985297_2986065_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_000708998.1\|2986119_2986875_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001045689.1\|2986981_2987971_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591795.1\|2988289_2989252_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001076742.1\|2989432_2990335_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
2990414:2990460	attL	NA	NA	NA	NA
WP_000468308.1\|2990570_2990789_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_000882969.1\|2990869_2992033_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	2.8e-206	100.0
WP_000978923.1\|2992032_2992512_-\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	3.9e-85	100.0
WP_000069913.1\|2992526_2994974_-\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	0.0e+00	100.0
WP_000785970.1\|2994966_2995086_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031311.1\|2995118_2995394_-\|tail	phage tail assembly protein	U5N0A4	Enterobacteria_phage	4.4e-41	100.0
WP_001251408.1\|2995450_2995969_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286731.1\|2995981_2997172_-\|tail	phage tail sheath protein	U5N3V0	Enterobacteria_phage	2.8e-225	100.0
WP_000382496.1\|2997473_2998580_+	hypothetical protein	U5N3F3	Enterobacteria_phage	2.1e-211	100.0
WP_001164103.1\|2998679_2999207_-\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	6.0e-95	100.0
WP_000104689.1\|2999210_3001289_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	0.0e+00	100.0
WP_001285325.1\|3001299_3001830_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_001121497.1\|3001822_3002731_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.5e-162	100.0
WP_000127164.1\|3002735_3003083_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
WP_001093710.1\|3003079_3003715_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	4.1e-114	100.0
WP_001001786.1\|3003781_3004234_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
WP_000917166.1\|3004226_3004694_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.0e-82	100.0
WP_072146842.1\|3004656_3004830_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	2.6e-23	93.0
WP_000040681.1\|3004801_3005227_-\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	1.0e-68	100.0
WP_000736580.1\|3005214_3005640_-	hypothetical protein	U5N096	Enterobacteria_phage	1.6e-61	100.0
WP_099205929.1\|3005654_3006152_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	2.0e-92	99.4
WP_000123124.1\|3006151_3006433_-\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_000846399.1\|3006436_3006640_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988633.1\|3006639_3007149_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000203437.1\|3007248_3007992_-\|terminase	terminase endonuclease subunit	U5N091	Enterobacteria_phage	8.3e-127	100.0
WP_001248540.1\|3007995_3009069_-\|capsid	phage major capsid protein, P2 family	U5N3E4	Enterobacteria_phage	5.1e-202	100.0
WP_001085979.1\|3009127_3009982_-\|capsid	GPO family capsid scaffolding protein	Q94MI4	Enterobacteria_phage	2.5e-135	97.5
WP_000156872.1\|3010155_3011928_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
WP_000038198.1\|3011927_3012962_+\|portal	phage portal protein	U5N087	Enterobacteria_phage	4.9e-202	100.0
WP_001284793.1\|3013740_3014517_+	cytolethal distending toxin type V subunit CdtA	G1BEM3	Escherichia_phage	7.9e-136	100.0
WP_000759934.1\|3014513_3015323_+	cytolethal distending toxin type III/V nuclease subunit CdtB	G1BEM4	Escherichia_phage	4.0e-151	100.0
WP_000825552.1\|3015337_3015883_+	cytolethal distending toxin type V subunit CdtC	G1BEM5	Escherichia_phage	4.9e-100	100.0
WP_099205931.1\|3015958_3018256_-	replication endonuclease	U5N0W3	Enterobacteria_phage	0.0e+00	99.9
WP_000027664.1\|3018245_3018521_-	DUF5405 family protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_001113264.1\|3018517_3018742_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001277965.1\|3018741_3019044_-	DUF5405 family protein	U5N0U2	Enterobacteria_phage	3.5e-47	100.0
WP_000557703.1\|3019043_3019268_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217674.1\|3019331_3019832_-	hypothetical protein	U5N0V9	Enterobacteria_phage	2.0e-92	100.0
WP_000453534.1\|3020001_3020274_-	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_001192857.1\|3020426_3020720_+	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000023384.1\|3020789_3021770_+\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	4.7e-186	100.0
WP_001223800.1\|3021955_3022456_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
3021886:3021932	attR	NA	NA	NA	NA
WP_001033722.1\|3022605_3023304_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580417.1\|3023300_3024674_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9

DBSCAN-SWA_7

4387965 : 4395105

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278994.1\|4387965_4388604_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_000590392.1\|4388600_4389863_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_000847985.1\|4389859_4390768_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001297141.1\|4390963_4391731_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_001141330.1\|4391781_4392438_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.3e-50	46.7
WP_001272898.1\|4392543_4395105_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6

DBSCAN-SWA_8

4688087 : 4745960

Pectobacterium_phage(11.11%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000312488.1\|4688087_4689347_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|4689349_4690354_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_001089295.1\|4690435_4690633_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_000527955.1\|4690736_4692035_+	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001177644.1\|4692239_4692665_+	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000076316.1\|4692703_4695145_+	ribonuclease R	Q0GXV6	Lactococcus_phage	6.4e-67	33.1
WP_001293282.1\|4695324_4696056_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000220137.1\|4696182_4696584_+	DUF2170 family protein	NA	NA	NA	NA
WP_000511955.1\|4696602_4697301_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_000012553.1\|4697351_4698011_+	YjfK family protein	NA	NA	NA	NA
WP_000547760.1\|4698028_4698427_+	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000101644.1\|4698436_4699075_+	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000943976.1\|4699077_4700241_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	1.3e-81	43.5
WP_001339483.1\|4700324_4701950_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000811566.1\|4702066_4702342_-\|protease	protease activator YjfN	NA	NA	NA	NA
WP_000254636.1\|4702490_4702820_-	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000569708.1\|4703001_4703751_+	esterase	NA	NA	NA	NA
WP_000133631.1\|4703747_4704503_-	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_001295191.1\|4704610_4705675_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_001300695.1\|4706029_4707427_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000218360.1\|4707442_4707748_+	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_000776505.1\|4707757_4708222_+	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_000056760.1\|4708235_4708886_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000949539.1\|4708895_4709750_+	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
WP_001170812.1\|4709749_4710436_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_000996728.1\|4710532_4711084_+	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_000492914.1\|4711158_4711434_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001216676.1\|4711760_4712156_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_001296681.1\|4712162_4712477_+	primosomal replication protein N	NA	NA	NA	NA
WP_000135199.1\|4712481_4712709_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_001196062.1\|4712750_4713200_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_001351393.1\|4713270_4714065_-	DUF2686 family protein	NA	NA	NA	NA
WP_000604912.1\|4714687_4715119_-\|transposase	IS200/IS605-like element IS609 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-43	60.6
WP_001367946.1\|4715126_4716335_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	9.2e-208	93.0
WP_001119478.1\|4716469_4717108_-	cell division protein YtfB	NA	NA	NA	NA
WP_000211225.1\|4717326_4717947_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_000228346.1\|4718255_4719668_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_000331456.1\|4719712_4720375_-	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_001351395.1\|4720482_4721448_-	DMT family transporter	NA	NA	NA	NA
WP_000560552.1\|4721556_4722417_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_000084622.1\|4722505_4722886_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000589460.1\|4723014_4724958_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000886909.1\|4725147_4725888_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000175289.1\|4725877_4726435_-	YtfJ family protein	NA	NA	NA	NA
WP_000689228.1\|4726759_4726966_+	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000935042.1\|4727027_4728371_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001295196.1\|4728693_4729332_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_001269327.1\|4729537_4731271_+	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_000060936.1\|4731267_4735047_+	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001219160.1\|4735049_4735391_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_000055072.1\|4735770_4736301_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	9.4e-56	63.9
WP_000265912.1\|4736610_4737567_+	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000205794.1\|4737706_4739209_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.1e-11	30.3
WP_001367906.1\|4739222_4740245_+	ABC transporter permease	NA	NA	NA	NA
WP_000596016.1\|4740231_4741227_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_000853753.1\|4741259_4742258_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
WP_001219791.1\|4742433_4743807_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000166270.1\|4743962_4744514_-	ribosome-associated protein	NA	NA	NA	NA
WP_001162171.1\|4744607_4745960_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_9

4777954 : 4788871

Enterobacteria_phage(88.89%)

integrase

attL 4773030:4773045|attR 4801090:4801105

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4773030:4773045	attL	NA	NA	NA	NA
WP_000776997.1\|4777954_4779220_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.2e-74	41.5
WP_000418440.1\|4779278_4780172_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_000932801.1\|4780180_4780696_-	hypothetical protein	NA	NA	NA	NA
WP_001205027.1\|4780893_4781205_-	hypothetical protein	NA	NA	NA	NA
WP_001825860.1\|4781514_4782087_-	hypothetical protein	Q7M2A1	Enterobacteria_phage	1.9e-94	96.2
WP_021038238.1\|4782160_4782661_-	transcriptional regulator	NA	NA	NA	NA
WP_001283029.1\|4782657_4783392_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.0e-129	98.8
WP_001149160.1\|4783944_4784211_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_080213683.1\|4784207_4784798_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.5e-67	97.0
WP_099205968.1\|4784790_4785078_+	Derepression protein	Q7M2A0	Enterobacteria_phage	1.6e-46	95.8
WP_096246359.1\|4785070_4785526_+	hypothetical protein	Q7M298	Enterobacteria_phage	4.7e-64	98.2
WP_000856729.1\|4785661_4785982_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_099205970.1\|4785996_4788330_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.7
WP_044815386.1\|4788676_4788871_+	hypothetical protein	Q38404	Enterobacteria_phage	1.5e-24	100.0
4801090:4801105	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015244

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection