CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022426	Aeromonas salmonicida subsp. pectinolytica 34mel chromosome, complete genome	13 crisprs	WYL,RT,cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	0	1	17	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022426_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_1

1539-1625

Orphan

Consensus_repeat	Method
TATTCCAACCTGATCCGAACCCT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP022426_1

>merge|NZ_CP022426|1|1539-1625|CRISPRCasFinder
TATTCCAACCTGATCCGAACCCTCTCTTCCTGATATGACGGTGAGTGGACAGATGCAGCGCGAATATTCCAACCTGATCCGAAACCT

>NZ_CP022426|1|1|1539-1625|CRISPRCasFinder
TATTCCAACCTGATCCGAACCCT	CTCTTCCTGATATGACGGTGAGTGGACAGATGCAGCGCGAA
TATTCCAACCTGATCCGAAACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_021139885.1\|8532_9492_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818
NZ_CP022426.1\|WP_021139883.1\|10633_11047_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|182691
NZ_CP022426.1\|WP_021139890.1\|2759_3863_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP022426.1\|WP_021139886.1\|7756_8461_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP022426.1\|WP_021139882.1\|11140_11578_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|182691
NZ_CP022426.1\|WP_005319542.1\|1653_2757_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP022426.1\|WP_021139889.1\|3859_6274_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP022426.1\|WP_021139887.1\|7308_7689_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319922
NZ_CP022426.1\|WP_021139884.1\|9582_10353_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP022426.1\|WP_021139888.1\|6341_7106_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_021139885.1\|8532_9492_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	7.04657e-126
NZ_CP022426.1\|WP_021139883.1\|10633_11047_+\|Hsp20-family-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	7.31912e-67
NZ_CP022426.1\|WP_021139890.1\|2759_3863_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	4.82702e-140
NZ_CP022426.1\|WP_021139886.1\|7756_8461_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.60699e-65
NZ_CP022426.1\|WP_021139882.1\|11140_11578_+\|Hsp20-family-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	5.95402e-45
NZ_CP022426.1\|WP_005319542.1\|1653_2757_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	0
NZ_CP022426.1\|WP_021139889.1\|3859_6274_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP022426.1\|WP_021139887.1\|7308_7689_-\|glyoxalase	gnl\|CDD\|319922	cd07261, EhpR_like, phenazine resistance protein, EhpR. Phenazine resistance protein (EhpR) in Enterobacter agglomerans confers resistance by binding D-alanyl-griseoluteic acid and acting as a chaperone involved in exporting the antibiotic rather than by altering it chemically. EhpR is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	1.21394e-55
NZ_CP022426.1\|WP_021139884.1\|9582_10353_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	7.70992e-17
NZ_CP022426.1\|WP_021139888.1\|6341_7106_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.86094e-05

>NZ_CP022426.1|WP_005319542.1|1653_2757_+|DNA-polymerase-III-subunit-beta
MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVYLNNESQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPASEYPNIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRLATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANNPEQEEAEELLDVQYEASEMEIGFNVSYVLDVLNTLKCDQIRISLSDSISSAIIEDFDHQDAQYVVMPMRI
>NZ_CP022426.1|WP_021139890.1|2759_3863_+|DNA-replication/repair-protein-RecF
MSLVKLQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGERAFTLFAQCELEGRQVPIGLAKDKSGETQLKIAGAQAQRLADLAELLPVQLIHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQSTQYRQLAFWDQELVRLGSELAEFRASYCQAITPLIKEMTADFLPEFDISLGFYRGWEKDTPLGDLLEAGFERDRTLGYTGVGPQKADVRLKANGVPAQDILSRGQLKLLVCAMRLAQGLYLNQHSSRGCIFLIDDFASELDVDKRRLLATRLKQCGSQVFITAIDTGQLADMMDANDCKLFHVEQGKISETLEKAESKL
>NZ_CP022426.1|WP_021139889.1|3859_6274_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDILVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSNSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDERDGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYIYIAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPAIGGEALERLVNQHRAVSHLITRMSRRAPDAVLTQLIYQPELNETLLASESDLLAWCQGMEAVLNESNHGIQYQIQVRRDEERSLFVPHAVVRQHGVDREYAISYDFLQSSEYRQLVSLGKEIANLIEDGGFIKRGEKVKPIANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGADQLFSTLMGDAVEPRRDFIETNALRVANLDV
>NZ_CP022426.1|WP_021139888.1|6341_7106_-|GNAT-family-N-acetyltransferase
MTSRHNSLRLYQPTNSTPDELTEQQLALFTLLQLREQEFGFNPNVIVHYPEAGFLGSPIGYLNQLIGEQLQQGYFINQVVILTTYQVLSSPLMQAGYQHEAVHMPAGPDHTAIFRWQCGTHPAGKTLYVEVVNEQDPKIRPTFVLMLRDEHGKLLGGMSGSIWTKEERRYAYIGTVVVQPGQPAGTGTLLANTVLEYLSLQRVCEINLGTQTAEPFYTRLGFRAIHHIVPALRHRTTKDGTELPHNLVIMSKLL
>NZ_CP022426.1|WP_021139887.1|7308_7689_-|glyoxalase
MLLVPQFTILYVANPARSALFYRELFGHPPVEESPTFAMFVFESGARLALWSSATVEPAVTQSEGAMELAFPLPDEASVDTGLAEWQARGLTILQQPTKMEFGYTGMALDPDGHRLRLYCLGAEPT
>NZ_CP022426.1|WP_021139886.1|7756_8461_-|YafY-family-transcriptional-regulator
MSRSERLLALLQLLRGHRYAITGTELASQLGISLRTLYRDIATLQAQGAHIEGEPGIGYVLRPGFMLPPLMFSEEELEALVLGSRWVVAHCDEALSASASSALAKIEAVLPAEYRQQLQANALLIGTSRSDSPVDEAPLRSAIRQQRKVTLSYRDLKEELSERTVWPFALGYFEQVRVLVAWCELRQGFRHFRVDRITRMQLEDNRYPKSRESLLKEWRATQQIPQPKFIADRN
>NZ_CP022426.1|WP_021139885.1|8532_9492_-|helix-turn-helix-domain-containing-protein
MPIPIVAVVAFDHFSPFHCSVPCLIFGDILPGQPLFELRLCAGDGKASSHSSQGFSIQAPHGLEALAEADIIIIPFWRAPAERPAQPLLDALTAAHARGAEVVGLCLGTYVLAYAGLLNGRKASTHWEYEQDFLRRFPCVRLDTNALYVDDEGLVTSAGTAAGLDCCLYLVRQHHGSAIANQVARRLVIPPHREGGQAQFIQQPVSASTRDTRMNQLLDHLRAHLPEPHTLDSLAAHSLMSRRTFTRRFHQATGLSVGEWLLIERLRRCQELLEASTHPIERIAELVGFKTATSLRQHFRARFAVSPSEWRRSFRGNKE
>NZ_CP022426.1|WP_021139884.1|9582_10353_-|MBL-fold-metallo-hydrolase
MQITQVRNATLLIDYAGTRFLIDPMLASKGTLPAFAGTANSHLHNPLVELPLPLAEILDVDAVIVTHDHLDHWDKVAQQQIPKHLPLFVQHQKDADTIRACGFKDVRLLSEQVEFTGIRLQQTEGQHGNDQVMAVLAERLGEVCGVVFSHPQEKTLYLAGDTVWNEMVAQSLRRHGPEVIILNCGDAQVPGLGSIIMGKEDVRAVYQAAPQATLIASHMEAVNHAVLSRKELRDYLAEHDMADRVRVPEDGDTLSL
>NZ_CP022426.1|WP_021139883.1|10633_11047_+|Hsp20-family-protein
MRSIDFSPLYRSAIGFDRLANLIESAASNGNAGYPPYNIEQLSDNDYRISMAVAGFTQEELELSFQENLLTVKGNKQAESDRNYLYQGIAERGFERRFQLADYVRVKGADLKNGLLHIELMREVPEAMKPRKIEING
>NZ_CP022426.1|WP_021139882.1|11140_11578_+|Hsp20-family-protein
MRNLDFSHLYSNAVGFERMARELEGLFEQKAAAYPPYNIEKREYDSYRITLAVAGFEREELELETENGTLKVKGRKAAAGERQFLHQGIAERDFELAFKLSQHVEVQGAKLEHGLLTIDLARELPEALKPRAIEIGKPDQLALPN

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Crispr_ID: NZ_CP022426_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_2

439638-439749

Orphan

Consensus_repeat	Method
GCCCTTTAAGTCTGGGGTGCCAGCTCCGGGTGAAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_2

>merge|NZ_CP022426|2|439638-439749|CRISPRCasFinder
GCCCTTTAAGTCTGGGGTGCCAGCTCCGGGTGAAGGAGAGATCCGGGCAATATAGTCGCCAGGATCCTTTCACACGCCCTTTAAGTCTGGGGTGCCAGCTCTGGGTGAAGGA

>NZ_CP022426|2|2|439638-439749|CRISPRCasFinder
GCCCTTTAAGTCTGGGGTGCCAGCTCCGGGTGAAGGA	GAGATCCGGGCAATATAGTCGCCAGGATCCTTTCACAC
GCCCTTTAAGTCTGGGGTGCCAGCTCTGGGTGAAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_005316053.1\|446570_446966_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP022426.1\|WP_021138972.1\|440616_441885_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180392
NZ_CP022426.1\|WP_021138973.1\|442049_442226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021138978.1\|448721_449633_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NZ_CP022426.1\|WP_034523673.1\|449932_450358_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021138969.1\|437692_438274_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182104
NZ_CP022426.1\|WP_021138967.1\|434279_435026_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP022426.1\|WP_021138968.1\|435087_436560_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP022426.1\|WP_021138966.1\|433977_434223_+\|DUF3624-domain-containing-protein	unknown	unknown	gnl\|CDD\|372017
NZ_CP022426.1\|WP_021138975.1\|444195_446373_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP022426.1\|WP_021138965.1\|431804_433247_-\|RimK-family-alpha-L-glutamate-ligase	unknown	unknown	gnl\|CDD\|379599
NZ_CP022426.1\|WP_021138974.1\|442326_444003_+\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP022426.1\|WP_021138976.1\|447012_447714_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_011899119.1\|433435_433981_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_CP022426.1\|WP_021138963.1\|427454_429422_+\|TonB-dependent-copper-receptor	unknown	unknown	gnl\|CDD\|273801
NZ_CP022426.1\|WP_021138977.1\|447972_448725_-\|lipase-chaperone	unknown	unknown	gnl\|CDD\|234937
NZ_CP022426.1\|WP_021138971.1\|439879_440506_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|239344
NZ_CP022426.1\|WP_021138964.1\|429571_431188_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|200451
NZ_CP022426.1\|WP_005316072.1\|437033_437486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_005316094.1\|431243_431780_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|376760

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_005316053.1\|446570_446966_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	5.2364e-31
NZ_CP022426.1\|WP_021138964.1\|429571_431188_+\|glycoside-hydrolase	gnl\|CDD\|200451	cd00551, AmyAc_family, Alpha amylase catalytic domain family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.59133e-57
NZ_CP022426.1\|WP_021138978.1\|448721_449633_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	3.24596e-60
NZ_CP022426.1\|WP_021138969.1\|437692_438274_-\|hypothetical-protein	gnl\|CDD\|182104	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional.	0.00641968
NZ_CP022426.1\|WP_021138967.1\|434279_435026_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.69093e-142
NZ_CP022426.1\|WP_021138968.1\|435087_436560_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	8.25739e-108
NZ_CP022426.1\|WP_021138966.1\|433977_434223_+\|DUF3624-domain-containing-protein	gnl\|CDD\|372017	pfam12292, DUF3624, Protein of unknown function (DUF3624). This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.	4.04811e-25
NZ_CP022426.1\|WP_021138975.1\|444195_446373_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP022426.1\|WP_021138965.1\|431804_433247_-\|RimK-family-alpha-L-glutamate-ligase	gnl\|CDD\|379599	pfam14401, RLAN, RimK-like ATPgrasp N-terminal domain. An uncharacterized alpha+beta fold domain that is mostly fused to a RimK-like ATP-grasp and is found in bacteria and euryarchaea. Members of this family are almost always associated in gene neighborhoods with a GNAT-like acetyltransferase fused to a papain-like petidase. Additionally M20-like peptidases, GCS2, 4Fe-4S Ferredoxins, a distinct metal-sulfur cluster protein and ribosomal proteins are found in the gene neighborhoods. Contextual analysis suggests a role for these in peptide biosynthesis.	2.79149e-44
NZ_CP022426.1\|WP_021138974.1\|442326_444003_+\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP022426.1\|WP_011899119.1\|433435_433981_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	3.83712e-14
NZ_CP022426.1\|WP_021138963.1\|427454_429422_+\|TonB-dependent-copper-receptor	gnl\|CDD\|273801	TIGR01778, TonB-copper, TonB-dependent copper receptor. This model represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterized members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa and NosA from Pseudomonas stutzeri which is responsible for providing copper for the copper-containing N2O reducatse. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.18496e-171
NZ_CP022426.1\|WP_021138977.1\|447972_448725_-\|lipase-chaperone	gnl\|CDD\|234937	PRK01294, PRK01294, lipase secretion chaperone.	1.31226e-12
NZ_CP022426.1\|WP_021138971.1\|439879_440506_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|239344	cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	3.84873e-34
NZ_CP022426.1\|WP_021138972.1\|440616_441885_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NZ_CP022426.1\|WP_005316094.1\|431243_431780_-\|MgtC/SapB-family-protein	gnl\|CDD\|376760	pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologs is not known.	6.83924e-30

>NZ_CP022426.1|WP_021138969.1|437692_438274_-|hypothetical-protein
MKLKHAWIAGLLSLSTCLVQAAEVVTEVATAPGKASLVEAVTAQATVTAIDMASRKVSLKNDAGEAFDIVAGEQVTNLQNLKVGDTVVLKYLQMLDLELLKGTAGVRQRVVEMDADKAAAGQKPGAGVGVKVTLYGDVIDVDKAQQTVTVKGVDHTLVVKVHNPAQFALIAKGDQIKAVQTQAVGIGIVPEKK
>NZ_CP022426.1|WP_005316072.1|437033_437486_+|hypothetical-protein
MDIKPYSQQLAQSASNSRALATLSGADSGQGGGWEELVNLSSQRLTSKAQQALTYEHLAKNSKLPPALDMNSDKGGMMQQLVDKALGFDRKKFNEIEEKLKAIADNKQLSAEEREQQSKALNEQKETMLQDAMDRLTGKKSEPKEETKTT
>NZ_CP022426.1|WP_021138968.1|435087_436560_-|C69-family-dipeptidase
MKKHTLSLLSATLLTLLGTSADACTGLVVGKGASADGSVMIARNEDFGVNNWNKYLAFRPAQQNEGKSWKLGNGLEVPMPKAFLAYSAIRDWDATASDLAGKYYEERGINEFNVALSATTSAEVNDKAQKADPLIEKGVIEAIIPTLILPQARSAKEGVALLGRYVEQYGAGEGNSLYLADVNEAWLMEIGSGHHWIAVRVPDDSYAMVANGLRIHGVNLDSADVLHSPNLLEFVREHKLLDNADPKDFNFAKAFGVIADPYNVDREWLGQKMLTASHQQATRQAQYPLFMKPDAPIAVPDVARVLSATYEGTPLAGKAERPIRIDRQLESHVIQLRKEMPKELQGLIWQSYGVLAESVMVPLYSPLESYPLPYRIGSDSYSDDSAYWQFRSLTALANTNPDKYLPLLRGVWSKESAKLYKEVAVLDKTLKQTYANDKATALGLAADYSYGQLEQTYQMAKELRYKLMTDLTKSTEKKYSEEEFKKIMSL
>NZ_CP022426.1|WP_021138967.1|434279_435026_+|SDR-family-oxidoreductase
MIAMVTGASSGFGEAISRQLVNAGYRVIGTGRRAERLAALGEELGDSFLPLVFDVQDKTATQAAIAGLPAAWQEVDLLVNNAGLALGLEPAHKADLEDWEQMIATNISGLTLLTRLLLPGMVARNRGHVVNIGSIAGTYPYPGGNVYGATKAFVKQFSLNLRADLAGTAIRVTNVEPGLCGGTEFSNVRFHGDDAKAATVYQGVQAIQPEDIANTVLWVSQQPAHVNINSIEIMPVAQTFGPLHISRG
>NZ_CP022426.1|WP_021138966.1|433977_434223_+|DUF3624-domain-containing-protein
MSCEDCLATAIKAKLGRCPVCAIQTFVIGLIGWLVWWWFGADTSVNALTGLLFALGGSGLFLLHLAVFIWRKVTGRELSDE
>NZ_CP022426.1|WP_011899119.1|433435_433981_+|GNAT-family-N-acetyltransferase
MLTVRAARTDDLGAIVKLERYCFPPEVAFGRSRWHYLLTHAKGRTLLLLDETSQLMGYLSLLEHRGWDRLVIQTLAIRWTIRRQGWARRLLEQVIREGREAGWGAVRLEVGDANEEALALYQALGFKAQQRLPDYYGRDQHAHRLVLSLIGDEERQLRGLARKHRIGGKAALQHGKAGCSG
>NZ_CP022426.1|WP_021138965.1|431804_433247_-|RimK-family-alpha-L-glutamate-ligase
MSTYVIVEELGDWPCHADYLLTARTYLQHGVPTTGGRPRIINLCRDLEHLSAGYYCSLLAQARGHHCLPGLQAISVLQPQQPPAKLWRKVQGWLAQQSEDRIRVRAIFGQSEQSELAGLARYYYGLSQLPLQELTLKRGRHGWSVRQQQSLSPLDLSQSEKALMLHHAQALVGAGDGEHAAPLYQLAILVDPDDGRASSDALALDRFIKAAAAQGIQAEILAPSAIERLPEFDTLWLRAETAVGHYTFEFARRAEQLKMPVIDSSRAILACSNKLYLYELMVRSGVPMPPTMVVTRRGRHQVGELVQRLGLPLMVKVPDGAQGRDLAMASDEQQLARLLDEGLGRSALLLVQSRIPAEFDWRIGFLDGSPLFACRRYRPEPGNRIRRRKHPLDMSRIEALPLTEVPERVLQTARRAVHQLGNGLFGVDLRQQGRDCVLLEIIDNPWIRGDIEDREAKDLYERLARAFRQRLENRGQSAAG
>NZ_CP022426.1|WP_005316094.1|431243_431780_-|MgtC/SapB-family-protein
MMTADWWDIAPLGWENILACLVCGTLVGLERQLRGKPVGIRTSSLIILGTYCFLAIGAAVSPQGADQARVLGQLITGIGFLGAGVMMTRDGQVLGVTSAATVWMLAALGALIGMEMLHQAVLLTGVTLAILVGVDYLETSFKSLRRGVHNRLESWRHGNSHAPAANTHQDELGSGIEK
>NZ_CP022426.1|WP_021138964.1|429571_431188_+|glycoside-hydrolase
MKQGRLRYGGLLGAALFLTACGSGGGGSSSEAQPPVVNPPVTSASRACYGNDQAACNLRTYQVMVESFVDGDSAANYGVGYGPSGHNGDLQGIIDSLDHIKSLNVNAIWLTPVFDSCAGQGGDDKLDATGYFACDFFTVDPNFGSNAQLKQLVDAAHQRGLYVFLDGVFGHVNKVGVSKPSPEGRQPVLKSGGAGYPGQLVDYSQPESLAYFKEVARYWVEQYGIDGWRLDQAYQLGLDEWRAIRGEVEQASAARKAAGQQWGTLGYMVGEVWKSADEIRAQAYGPSDKPALSSAFDFPLRYGIVQALAVEESGKGGQGASVLDASWNKVESYPNHAMPNLMLGNHDLVRFGDLLERGNFNPADYWQRHKAAFSFLAARSGPITFYYGEEFGDEVPGFAKQVSGDCAAQGLCDDHVARSDGKVPGVTGFVPSSDQAELKQWLSQLLAMRATHPALYQGERVKLVADGSVYGDIKQTAAEQIVYLLNVSTTPQSYALPVGKLRSGSALVDLQSGESLALGGSSVTVDLPPLSGRFLLLQ
>NZ_CP022426.1|WP_021138963.1|427454_429422_+|TonB-dependent-copper-receptor
MAHFMRTPLALLVGGLACHGAAGQEQVQRLEPMVVVASRPTSTLEVTLDPKKPGSPMPAADGAGYLKNVTGMSMVRKGGLGGDPVLRGMGMSRLNVQMDGGMLAGGCGGRMDPPTAYVFPQSFDRIRVLKGPQSLEQGATLAGTVLFERDRPEFSAPGVKAEASALYGSSGRDDQMLDATVGAPEGYLRGQFTHSDSDDYRDGHGDKVRSFYRRENGTAQLGWTPGDNTLLELTAERSNARAAYADRMMDGPMFDRESFGLKFKQEAISQQWRRSELTLWDNDIDHIMDNFSLRPNSGIKMLSNPDRRNTGGRWANDIALPADWLLTAGLDANRDQHRARSGVDYASQPRQRTLRFEQQGWFSELGRQQGAHSYKGGYRQDRVETTKYGAGDQTLYSDKLVLDSGFGRYEYQWSPAWSSYLAWGQAERAPDYWERSKDSVPFTLNPERSRQWDAGLALRSRDLDLTLSLFSADIKDYLLYHSKSNQVRNIEAHTRGGELEGRWQFAEQWRLDGGLAVVYGENQSDSKPLAQMPPLDGKLALGWQPDEDWSFTLLGRAVAAQKRVDVGSGTVAGQDQGETPGFFTMNLSGAWQVSEGWQLSAGIDNLFDTFYYEHLSKSVHASQAGLGYEQIGRIPEPGRAFWLSVNYRFASAGVL
>NZ_CP022426.1|WP_021138971.1|439879_440506_-|glutathione-S-transferase-family-protein
MIILHHLNKSRSQRIIWLLEELGLPYQIKAYQRDATTFLAPPELKAIHPLGKSPVIELEGRVMAESGAITEYLIARHAPERLAPAQDSPDYPEYLQWIHFAESSGILPLLLDMFVRKDGSPMRFLPDYAKAECAKVLGYLNQVLANRHYLVGDRLSGADIMNSFLVDLLAQGGQLAHFPHLQTYWERLNTHPARQKAAVLERELDLGA
>NZ_CP022426.1|WP_021138972.1|440616_441885_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKDATLALHHGFSSDPTTKAVAVPIYQTVAYEFDSAQHGADLFNLAVPGNIYTRIMNPTNDVLEQRMAALEGGIAGLVVSAGSAAITYAIQALTAAGDNIVSTPQLYGGTYTLFAHMLPSFGVEVRFAKDDSAEAIAALIDDKTKAVYCESIGNPAGNIVDLAAFAKVAHARGVPLIVDNTVATPVLCKPIEHGADIVVHSLTKYVGGHGNSLGGVIVDSGKFPWADNAERFPQLTQPEPSYHGVVYTEAFGLAAFIGRVRTVPLRNTGAALAPMNAFLLLQGLETLSLRMERHVDNALQVAHHLKHHPKVAWVSYAGLPGHPHYLLAEKYMGGRPSAILSFGLKEGYEAGVRFYDALKIFKRLVNIGDAKSLACHPASTTHRQLSEEEQVRAGVKPEMIRLSVGIEAIEDILADLDQALEA
>NZ_CP022426.1|WP_021138973.1|442049_442226_-|hypothetical-protein
MNQQSTPKPNRIQQTLRRYFKRILPRPLTLIEDPMSQLNRLMQWDMHQIDDKEYRRRL
>NZ_CP022426.1|WP_021138974.1|442326_444003_+|HTH-type-transcriptional-regulator-SgrR
MPTSRLYQQFQRLAQQLGCDEREASLAEVADLLCCTPRNARLLLRRMQDQGWLSWSAEAGRARRSRLTLLDSQESLTRRRLRDLLSQGQLAQAVRLAEGRLDLLTPLLIEQLGQATREGRQILRVPYYRPLPQLLPTDPLRRSEIHLSRQIFNGLTRRNEENGEIEGDLAHHWECLGPCHWRFYLRPVVRFHHGRELVVEDVMESLLALRDRPLFAHLVRLESPWPRTLDMYLDSPDPLLPHLLAEPVATILPRELKGEAGFALQPVGTGPYKVTANDPLHLCLEAFDDYFGLRALLDEIDIWMLPELAERLETHLQLGRDSPELGTMRGESELESGCYFLLQDDRSVSLQDPALRHWLAQLLNPIALMARVAPELQRGWTSALGLLPHWREALPASLPTPEQLPTRLVLACFNQHLEFNECAGAMASLLAEQGIRLEVRTLDYGRWVSGVDEDVDLWLGTLNLEHEHAFAPYAWLLGTPLLHKVWASQHALWQGLTRWRASGEEPGPRALLARVQQQGWFVPLFHHWLELESRVGVHGVRMTALGWFDFRSAWLRPE
>NZ_CP022426.1|WP_021138975.1|444195_446373_+|catalase/peroxidase-HPI
MSNNSERSQGKCPVMHGGTTSGEQANMAWWPKSLNLDILHQHDTKTNPLGPGFNYREELKKLDMAALKQDVTALMTDSQDWWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGSTGNQRFAPLNSWPDNANLDKARRLLWPIKKKYGNKISWADLIILAGTVAYESMGLKTFGFAFGREDIWHPEKDIYWGAEKEWLAPSSKPGGRYSGERDLDNPLAAVMMGLIYVNPEGVDGNPDPLKTAKDMRVTFARMAMDDEETVALTAGGHTVGKCHGNGDARLLGPEPEGAAVEDQGLGWLNKTQRGIGRNAVTSGIEGAWTTHPTRWDNGYFYLLFNYEWELKKSPAGAWQWEPVNIREEDKPVDVEDPAIRHNPIMTDADMALKFDPEYRKIAERFRADPARFSDAFARAWFKLTHRDLGPKSRYVGPYVPAEDLIWQDPVPAGRTDYDVAAVKARIAASGLSISDMVSTAWDSARTFRGSDLRGGANGARIRLAPQKEWEGNEPARLARVLKVLEPIAAASQISVADVIVLAGNLGVELAARAAGVEVTVPFKPGRGDASQAQTDVASFDVLEPLADGYRNWLKKDYAVTAEELMLDRTQLMGLTAHEMTVLVGGMRVLGINHGGTRHGVFTEREGALTNDYFVNLTDMANTWHPAGERLYEVRDRKSGKVKWTATRIDLVFGSNSVLRAYAEVYAQDDNKEKFVCDFISAWNKVMNADRFDLMS
>NZ_CP022426.1|WP_005316053.1|446570_446966_+|acyl-CoA-thioesterase
MLEMQIQPRFQETDALGHINNTVPAVWFEAARDPLFRIFSPELDVHNWHLIIAGYTVQFKRELFYGQQVSINTGVRRIGSSSFTLWQEAWQGGELAVTGETTLIHFDYQTRQSLPLSDKHREALRAWLIES
>NZ_CP022426.1|WP_021138976.1|447012_447714_+|hypothetical-protein
MRNTVTALTLGLCSLPSLAASLAEQFTLIDRGAESALDTRLFSHDGVEIKAWIDGTPVIIAVPIMNEQGKLQGESRYYFKGGKLFGVREPAAQFAFDEQGKLTHWLDNKGQPAEFVSKISMQQREAWLTKRSADLARLFAISPAEQKASSGSVKLKGAELTHWLCNGKLMDLARGDKVTFEQKTLKVSESGIEGEVSLRQDKGWQDLNLKCDVQGTQVTRLTWQPLPGANKPQ
>NZ_CP022426.1|WP_021138977.1|447972_448725_-|lipase-chaperone
MKRSLLLALPLGGAFLLGAALLWPDPPPSLNAAPEQGALRHQLAQRLEQGEADAETSLLARYQVFLAAEGRLMVPTDPDLASLQQLFDQREQLRQQSFTPAEQDQLFAEDRLMEQWTLRRKALAQASDADKKMLAGELELWLTEQPQWFREAEVNSRLLGELQTLEQLPPAEREAVLLEQLGPEAVDRLHQLEQSQQGFEQQLAGYLAELTPLPALDRAEQQQEILARWFPAEQWRRVEALTRLRLEEQP
>NZ_CP022426.1|WP_021138978.1|448721_449633_-|triacylglycerol-lipase
MKRWLLVLLCALPMLGQAAGYTQTRYPMVLVHGLFGFDKLLGVDYFYGIPQALTRDGARVYVAQVSATHSSELRGEQLLKQVQQVLAITGADKVNLIGHSHGSPTIRYVASVAPELVASATSVGGVNYGSEIADLVRANVTPGSIAEKLAVAAASALSGVISLLSGGSQLPQDPLASLDALTSAGAQRFNQRYPEGLPSQYCGEGPLRAANGVYYFSWSGRGSMTNILDPVDPALALTSTFFSEPNDGLVGVCSSHLGKVIGTGYRMNHLDEVNQSFGIHHLFDTDPVTLYRQHANRLQGLGL
>NZ_CP022426.1|WP_034523673.1|449932_450358_+|hypothetical-protein
MVHWKQQTLSGNRYFDAGEYAKALSYYQQALWLARQQFSFWHDADEAVAALVVAHHNLADLLIAMTLPDRAADLLCHIHDCLLATSQSPACPSPLRAAALRHTRSTHTELIAFVRKHGTQDAIQRCLGQCLCHAEPAHQLH

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Crispr_ID: NZ_CP022426_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_3

604749-604848

Unclear

Consensus_repeat	Method
TGCCTGCGCCGATAAAGGCGAGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP022426_3

>merge|NZ_CP022426|3|604749-604848|CRISPRCasFinder
TGCCTGCGCCGATAAAGGCGAGGATTCTCTGCTGCATCAAACACTCCTGTGGATGAAATGGCTGCAAACACCTGCACTGCCTGCGCCGATAAAGGCGAGG

>NZ_CP022426|3|3|604749-604848|CRISPRCasFinder
TGCCTGCGCCGATAAAGGCGAGG	ATTCTCTGCTGCATCAAACACTCCTGTGGATGAAATGGCTGCAAACACCTGCAC
TGCCTGCGCCGATAAAGGCGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_059112460.1\|602275_602575_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_034524209.1\|600561_602166_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
NZ_CP022426.1\|WP_021140449.1\|596937_597378_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP022426.1\|WP_021140457.1\|604875_605577_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NZ_CP022426.1\|WP_099368894.1\|602643_603063_-\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP022426.1\|WP_005320494.1\|598220_598649_-\|DUF2753-family-protein	unknown	unknown	gnl\|CDD\|287867
NZ_CP022426.1\|WP_021140455.1\|603081_603381_-\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP022426.1\|WP_021140463.1\|613134_613593_-\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP022426.1\|WP_005320466.1\|605616_606651_+\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NZ_CP022426.1\|WP_021140462.1\|612448_612679_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021140452.1\|599672_600380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378068
NZ_CP022426.1\|WP_005320452.1\|612683_613145_-\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|381734
NZ_CP022426.1\|WP_005320462.1\|608808_610032_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NZ_CP022426.1\|WP_021140450.1\|597467_598217_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP022426.1\|WP_021140459.1\|607827_608601_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP022426.1\|WP_034524218.1\|611062_612370_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP022426.1\|WP_021140458.1\|606686_607796_+\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NZ_CP022426.1\|WP_021140460.1\|610160_610871_+\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP022426.1\|WP_021140451.1\|598954_599617_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP022426.1\|WP_005320477.1\|603380_603932_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_034524209.1\|600561_602166_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP022426.1\|WP_021140455.1\|603081_603381_-\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.73319e-54
NZ_CP022426.1\|WP_021140457.1\|604875_605577_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	2.07003e-133
NZ_CP022426.1\|WP_099368894.1\|602643_603063_-\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	8.31685e-58
NZ_CP022426.1\|WP_005320494.1\|598220_598649_-\|DUF2753-family-protein	gnl\|CDD\|287867	pfam10952, DUF2753, Protein of unknown function (DUF2753). This bacterial family of proteins has no known function.	8.70931e-75
NZ_CP022426.1\|WP_021140449.1\|596937_597378_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	5.07383e-42
NZ_CP022426.1\|WP_021140463.1\|613134_613593_-\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	1.21784e-51
NZ_CP022426.1\|WP_005320466.1\|605616_606651_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP022426.1\|WP_021140452.1\|599672_600380_-\|hypothetical-protein	gnl\|CDD\|378068	pfam08857, ParBc_2, Putative ParB-like nuclease. This domain is probably distantly related to pfam02195. Suggesting these uncharacterized proteins have a nuclease function.	9.32623e-71
NZ_CP022426.1\|WP_005320452.1\|612683_613145_-\|chemotaxis-protein-CheX	gnl\|CDD\|381734	cd17906, CheX, chemotaxis phosphatase CheX. This family contains CheX CheY-P phosphatase which is very closely related to CheC chemotaxis phosphatase; both dephosphorylate CheY, although CheC requires binding of CheD to achieve the level of activity of CheX. CheX has been shown to be the most powerful CheY-P phosphatase of the CheC-FliY-CheX (CXY) family. Structural and functional data of CheX and its CheY3 substrate in Borrelia burgdorferi (the causative agent of Lyme disease) bound to the phosphoryl analog BeF3(-) and Mg2+ reveal a unique mode of binding, but a catalytic mechanism which is virtually identical to that used by the structurally unrelated CheZ, providing a striking example of convergent evolution. Thus, CheX is quite divergent from the rest of the CXY family; it forms a dimer and some may function outside chemotaxis. The data also suggest a possible CheX regulatory mechanism through dissociation of the CheX homodimer.	2.53743e-52
NZ_CP022426.1\|WP_005320462.1\|608808_610032_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP022426.1\|WP_021140450.1\|597467_598217_+\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	6.02903e-86
NZ_CP022426.1\|WP_021140459.1\|607827_608601_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	3.30475e-151
NZ_CP022426.1\|WP_034524218.1\|611062_612370_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	2.40786e-145
NZ_CP022426.1\|WP_021140458.1\|606686_607796_+\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP022426.1\|WP_021140460.1\|610160_610871_+\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	1.77113e-72
NZ_CP022426.1\|WP_021140451.1\|598954_599617_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	9.78312e-65
NZ_CP022426.1\|WP_005320477.1\|603380_603932_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	2.32154e-12

>NZ_CP022426.1|WP_005320477.1|603380_603932_-|YggT-family-protein
MNTAYFLINTIFDIYLMVVLLRVWLQWARADFYNPMSQMVVKVTNPLVIPLRRVIPGFGGVDMASVLLAIIIAFAKLALLKSMNVLLADWLTISLFAALTVLKKAGSMIFWVLLIRAILSWVSQGRNPIEHVMHQLTEPFLAPIRRILPALGGLDLSVLVAFIGLQAINYLLGDLFGQLWWMI
>NZ_CP022426.1|WP_021140455.1|603081_603381_-|YggU-family-protein
MPAVLREGDELILHLMIQPKASRDQIVGLHGDELKVAITAPPVDGQANSHLIKYLAKQFKVAKGQVRIVRGELGRHKTIAIESPRQIPAEIHALLETQG
>NZ_CP022426.1|WP_099368894.1|602643_603063_-|DUF4426-domain-containing-protein
MKTAWISCLLALLTTLPLRAEQMKELGPWQVHYSAFNSSFLTPDVAKAYGLERSRYNGIINIAVQNKQGVAQAVGITGEAKNLTGTLRTLTFQEVKEGDAIYYLAVLPYRNQDTYQFTLKIMGEGQQQTLTFQQTFYVD
>NZ_CP022426.1|WP_059112460.1|602275_602575_+|hypothetical-protein
MRFLLMIPLLVTLPAHAASESQCRQAFTDWMLTQHQQFSDRNASKMERRQAERAIDQMRDEFAKQESFCQAMEWATHHQDQDPRFNPRPGEIHDFTPAS
>NZ_CP022426.1|WP_034524209.1|600561_602166_+|peptide-ABC-transporter-substrate-binding-protein
MKGWSPLLALLGCACVQAADVPPGTQLAAEQAVVRHLKDEPASLSPLKLVGLPELQVLRDLYEGLLTQGPDGKVLPGVATRWDNKDNQQFTFHLRPDARWSNGDKVKAADFVYGWRKLVDPKEAATFAWFAQLAHFTKVDEIVAGKLPPEALGVKALDEHTLQVNLSQPVPYFLSLLTHPSLSPLHQASMEQYGNQWTQPGKLVGNGAFVLSQRVVNEKLELAPNPHYWDKAHTVLTKVTFVPINQETAATNRYLAGDLHITESFPKEQYHKLMQQIPGEVHTPDQLGTYYYAFNTQLPPLNDVRVRKALSYTIDRDLIAAKVLGTGEKPAYRFTPDVTADFEPKANLLSSTSQQDLDARARALLQEAGYGPAKPLKLTLLYNTAEIHKKMALAIANLWKQKLGAQVELTNQEWKTYLDSRQSGQFEVIRSSWVADYNDPSAFLGLWGSRHSGNMARFANARYDEILTQAAKSRDPGERARLFDEAESILQDEAPIAPIYQYTNARLIKPWLKGYPINNPEDVAYSRQLYLIKH
>NZ_CP022426.1|WP_021140452.1|599672_600380_-|hypothetical-protein
MRAWILLALAISQGAWALAPCERETQVGSWCEVNIDQLHPTQGGVGQIQVDNTQAELAGKSEKQLDKVMKKKEIPIVIAPDGGYWLVDRHHLTKALWQLGVKQARVKVIARLQDKSSFWSQMQGNHWAWLKDEKGAPLTPEQLPAHIGDLPDYPYRTVAGMLQDAGYFEKRDQVYFVEFAWASWLGQQLGWLPVDGASLMERLNQAKRLACSSKASDLPGYPGKQCRVNQSRSGS
>NZ_CP022426.1|WP_021140451.1|598954_599617_+|CatB-related-O-acetyltransferase
MKHCQHWSQVEYLHLTVTNPNISLKGQHSYYSGAWDGPFEEEAVRYLHGDSWSRSPDTGWEPLWHIDRLHIGDYVQIAAGVKIIMGGNHTHNPAFISTYPFADPDALKRSYRPAGDTHIGNDVWIGMDAMIMPGVTIGDGAIIAARSLVTQDVPPYCMVAGTPARVIRQRFAVQETTRLQALAWWDWPDEQVQALLPQIQQGEVALLEQAAARWHSAKQE
>NZ_CP022426.1|WP_005320494.1|598220_598649_-|DUF2753-family-protein
MTHHIWQRYMLEAENALGAGALGAAICLYQQALAEVYELASDDLDELASMRVATCHRLADFWRAMEEPAYELRYLKLASELVTALVPQCPNRECESLVSELGCCQAALISFLKRHPNPEIARLIQLQDKVQGCELIGRFRLN
>NZ_CP022426.1|WP_021140450.1|597467_598217_+|enoyl-CoA-hydratase
MDPIIVAEQQDGLLTLTFNRPDKRNALNTDMYRALTQALRQATQDDAVQVLLIQGQRDCFTAGNDLADFMGKSSLDADDPILQFLHTLADFPKPVIAAVGGPAVGIGTTLLLHCDLVYLGDNARLQLPFVELGLVPEFASSLLLPRAVGHLKAAELLLLAEAIDADEALRLGLANRVVAADELLALARDQGLKLAAKPPKALQKSKALLKQELKQAVHFIIDLEARAFSLALQGEEAQHRIAQRLKPRA
>NZ_CP022426.1|WP_021140449.1|596937_597378_-|copper-chaperone-PCu(A)C
MFKRAFYSLLALGLAAPALAKVEAVDGYVRLLPPGSPNTAAFLVLKNDADKPVKLVAAASPEVGRAELHTHLHENGVMRMRQVESIAIPAKGEVALKPGSFHVMLFEVRELSQGTPFPLTLTMDDGQTLELNLPVKPIEPMAGMQH
>NZ_CP022426.1|WP_021140457.1|604875_605577_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSQIAQHLLQVKERIVQAARQADRCVDHINLLAVSKTKPLEAIREAYTAGQRRFGESYAQEAATKIDTLREQAVCTDIEWHFIGPLQSNKSRLVAERFDWVQSVDRDKLIERLNNQRPAGLAPLNICLQINISGESSKSGTSEQEIFRLAELVSHSERLVLRGLMAIPEHTSDEAVLAAQMVRMQTLFTELAQQYPSVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGARDYS
>NZ_CP022426.1|WP_005320466.1|605616_606651_+|type-IV-pilus-twitching-motility-protein-PilT
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLARFRVNAFQQSRGSGAVFRTIPSTVLSLEDLDAPEIFRKISEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIEDPIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRIIDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSLKQLVSRGVVASLDAKAKAVDPNSV
>NZ_CP022426.1|WP_021140458.1|606686_607796_+|PilT/PilU-family-type-4a-pilus-ATPase
MNLDALLAELVARKGSDLFITVGTPPTLKINGHLFSLGSEALDKQSALTLVRETLSPEHFERYIRTREGNYAIHREALGRFRVSAFWQQELPGMVVRRIETRIPTFDELTLPPILQEVAMAKRGLVLFVGATGTGKSTTQAAMIGYRNQNADGHILTVEDPVEFVHQHGRSLITQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRILHLVPQEKHRQLLFDLSFNLRAIVAQQLVPSLDGRRRFAAFEVLLNTPLITDIIRKGEVHRLKEVMTKSTELGMQTFDQALFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQMGAGTLDNVTLDE
>NZ_CP022426.1|WP_021140459.1|607827_608601_+|peroxide-stress-protein-YaaA
MLIVVSPAKTLDYESPLVTSRFTQPQLLDHSAELITRARQLSPDQIASLMKISDKLAGLNAARFAQWQPDFHPDNARQALLAFKGDVYTGLAVEDFSDGDFDFAQAHLRMLSGLYGVLRPLDLMMPYRLEMGTRLDNSRGKDLYQFWGDVITQHINAALAAQGDEVLINLASDEYFKSVRPKALKGRIVTPVFKDEKNGQFKIISFYAKKARGMMARHIIKHRLTEVEQLTGFNVDGYYFVPEESDAHTLMFKRADN
>NZ_CP022426.1|WP_005320462.1|608808_610032_-|ATP-dependent-RNA-helicase-SrmB
MSQSFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQHLLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLPALTKTTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYRKHTMLFSATLEGAGLEKFANEILNEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIHILKDPETQKAIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLVATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKIERYTEERLKRRVIDELRPKHKEARVPVKKKKPKDGKKKSAKKKKK
>NZ_CP022426.1|WP_021140460.1|610160_610871_+|methyltransferase
MGRNSGFTFKQFHVEHDCCAMKVGTDGILLGAWAPVAETRRVLDIGTGSGLVALMLAQRSRSDCIIDAVELDMNAATQARENVAASPWATRINIMGGAIQDYQATPYDLIVSNPPYFGAGQSLRDPARALARHTGSLDSRDLLAACDRLLTPVGQVALVLPTAMADEILCISADYDLHGVCYTAVITRAGKEANRVLLLLGRGLNRCEQGEIVIHSAGGAYSDRYIQLTHPFYLKM
>NZ_CP022426.1|WP_034524218.1|611062_612370_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MTKSLTFSDVLGLGFMTFAFYLGAGNIIFPPLAGYMAGEHLSLAMLGFLVTAVGLPLITIIAVAKAGNGWAGMTKLLPAGLATALAVAIYIIIGPAFAAPRTGLVAYEMGLKPFIGDMGQAGLAAYTVIFFGIAILVSLNQGKLMDNIGKYLMPLLMVLLLTLAVGVFVAPQGTMPSATGDYLEGPFVKGILEGYNTMDTLASLMFGALIIDLLRQKGINDYKSQFKYLAIAGVISAIGLSVVYVSLFQLGNTAAGVATDVSNGGAIVNAYVLSLFGQPGQFILAGIITLACFTTAVGLISACSDFFHNLTGMSYKKLVVLLGTICAIVANVGLSQLISLSIPVLVAIYPVAVALVLVTFLKGYFGRPRLVFRGVLLVAFLFGCLDGLGAAGMKMDAFAFLPLFDKGLAWLLPTLLACGLGMVLRSSEKLAAEAA
>NZ_CP022426.1|WP_021140462.1|612448_612679_-|hypothetical-protein
MWKVLKWLVIGGVLLLILSDVQISTSLYKYDDNKVVVSFPRWQADRPWGTFQWHAGRIETRWYGLEGKPKPIVPLL
>NZ_CP022426.1|WP_005320452.1|612683_613145_-|chemotaxis-protein-CheX
MKADFVNPFLLSLLNVLSTMAQLELRPGKPKRKMDELARGDVSGLIGMVGPQTRGSLSISFEKGLALEIMRRMLGEAPATINEEVTDMVGEITNMVTGGAKRMLGEKGYEFDMATPIIVSGPNHTITHRADGTKIMMPFESDYGRATIEICFE
>NZ_CP022426.1|WP_021140463.1|613134_613593_-|zinc-uptake-transcriptional-repressor-Zur
MNQDQLLQRAERLCEQRGIRFTPTRRQVFTLLAAHGNAISAYDLLAQLQQTEAHAKPPTVYRALDFLLEQGFAHKVESLNAFIFCCHFDHAHPMQLLICDECGDVVELHDTAIDSAFSEQAHLHGFTITNKTIEAHGQCARCTPTVGSQHEG

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Crispr_ID: NZ_CP022426_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_4

1122567-1122679

Orphan

Consensus_repeat	Method
AGAAACAGGGGCCTAGTGCCCCTGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_4

>merge|NZ_CP022426|4|1122567-1122679|CRISPRCasFinder
AGAAACAGGGGCCTAGTGCCCCTGTTTTGTTAGGTTAATCCCCCTGTAAAAACAGGGTCTGATGCGCTTGATATGTTAACCCCCCAGAAACAGGGGCCTGGTGCCCCTGTTTT

>NZ_CP022426|4|4|1122567-1122679|CRISPRCasFinder
AGAAACAGGGGCCTAGTGCCCCTGTTTT	GTTAGGTTAATCCCCCTGTAAAAACAGGGTCTGATGCGCTTGATATGTTAACCCCCC
AGAAACAGGGGCCTGGTGCCCCTGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_021139747.1\|1131193_1132558_+\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP022426.1\|WP_021139758.1\|1114102_1116256_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP022426.1\|WP_021139754.1\|1122711_1123815_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|184420
NZ_CP022426.1\|WP_005311611.1\|1119762_1120296_-\|glycine-cleavage-system-transcriptional-repressor	unknown	unknown	gnl\|CDD\|236935
NZ_CP022426.1\|WP_021139751.1\|1125611_1126244_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP022426.1\|WP_017412149.1\|1118332_1118833_-\|YfbU-family-protein	unknown	unknown	gnl\|CDD\|180087
NZ_CP022426.1\|WP_021139750.1\|1126851_1127550_+\|DUF3334-family-protein	unknown	unknown	gnl\|CDD\|314646
NZ_CP022426.1\|WP_010673158.1\|1110818_1110971_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021139760.1\|1111361_1113080_+\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|181602
NZ_CP022426.1\|WP_021139748.1\|1128825_1131138_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP022426.1\|WP_034523907.1\|1124637_1125540_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP022426.1\|WP_021139749.1\|1127619_1128618_-\|DUF2860-family-protein	unknown	unknown	gnl\|CDD\|371359
NZ_CP022426.1\|WP_005311624.1\|1126315_1126753_+\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|334445
NZ_CP022426.1\|WP_011899053.1\|1117831_1118272_+\|DUF412-domain-containing-protein	unknown	unknown	gnl\|CDD\|377248
NZ_CP022426.1\|WP_021139746.1\|1132880_1133084_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021139759.1\|1113079_1113574_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP022426.1\|WP_005311607.1\|1116326_1117529_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP022426.1\|WP_021139757.1\|1119276_1119741_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|181857
NZ_CP022426.1\|WP_021139756.1\|1120563_1121451_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP022426.1\|WP_021139753.1\|1123946_1124543_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_021139747.1\|1131193_1132558_+\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP022426.1\|WP_021139758.1\|1114102_1116256_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP022426.1\|WP_005311611.1\|1119762_1120296_-\|glycine-cleavage-system-transcriptional-repressor	gnl\|CDD\|236935	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional.	8.05624e-47
NZ_CP022426.1\|WP_021139751.1\|1125611_1126244_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	2.02782e-38
NZ_CP022426.1\|WP_017412149.1\|1118332_1118833_-\|YfbU-family-protein	gnl\|CDD\|180087	PRK05445, PRK05445, YfbU family protein.	3.22814e-85
NZ_CP022426.1\|WP_021139750.1\|1126851_1127550_+\|DUF3334-family-protein	gnl\|CDD\|314646	pfam11813, DUF3334, Protein of unknown function (DUF3334). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.	1.19808e-148
NZ_CP022426.1\|WP_021139754.1\|1122711_1123815_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|184420	PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP022426.1\|WP_021139760.1\|1111361_1113080_+\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|181602	PRK08979, PRK08979, acetolactate synthase 3 large subunit.	0
NZ_CP022426.1\|WP_021139748.1\|1128825_1131138_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP022426.1\|WP_034523907.1\|1124637_1125540_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.41102e-56
NZ_CP022426.1\|WP_021139749.1\|1127619_1128618_-\|DUF2860-family-protein	gnl\|CDD\|371359	pfam11059, DUF2860, Protein of unknown function (DUF2860). This bacterial family of proteins has no known function.	5.47516e-70
NZ_CP022426.1\|WP_005311624.1\|1126315_1126753_+\|HIT-domain-containing-protein	gnl\|CDD\|334445	pfam01230, HIT, HIT domain.	1.78311e-19
NZ_CP022426.1\|WP_011899053.1\|1117831_1118272_+\|DUF412-domain-containing-protein	gnl\|CDD\|377248	pfam04217, DUF412, Protein of unknown function, DUF412. This family consists of bacterial proteins, including yfbV from E. coli. YfbV is a membrane protien involved in insulating the chromosome from the TerR macrodomain.	2.85575e-63
NZ_CP022426.1\|WP_021139759.1\|1113079_1113574_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	4.18461e-94
NZ_CP022426.1\|WP_005311607.1\|1116326_1117529_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP022426.1\|WP_021139757.1\|1119276_1119741_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|181857	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.	6.49411e-106
NZ_CP022426.1\|WP_021139756.1\|1120563_1121451_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	2.41161e-164
NZ_CP022426.1\|WP_021139753.1\|1123946_1124543_-\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	1.37021e-120

>NZ_CP022426.1|WP_021139756.1|1120563_1121451_+|4-hydroxy-tetrahydrodipicolinate-synthase
MLRGSLVALVTPMLASGEVDWASLATLVDYHVSAGTAAIVAVGTTGESVTLSEQEHIAVVEKTVELAAGRIPVIAGCGSNNTAHAIALAKRFAETGVVAGLSVTPYYNKPTQEGLYRHYCAIAEASGLPQILYNVPGRTCCDLKPETVARLARVPGIIGLKEATGDLSRTPLLRELCGEEFALYSGDDASGCDFMLQGGDGVISVTTNIAAAQMADMCRAALAGDAGQAHDINNRLMPLHQTLFCEPSPIPVKWACARLGLIATATLRLPLTDLTPEGEQAMTRALTTAELMASV
>NZ_CP022426.1|WP_005311611.1|1119762_1120296_-|glycine-cleavage-system-transcriptional-repressor
MTHYLVVTAIGTDRPGIVNEVTRHVSGCGCNIVDSRLGIFGNEFTFIMLLSGDWNSLMQLEISLPLRSQEWELITMMKRTERHHSLQYDISANAEILIRDQPGIVSQCTQFFSDHGWDIQAMQTMTLEQQPYNLLKASFQLNLAKQGEAAGSDTAFAGFCRELGAESFEFIVNNKHA
>NZ_CP022426.1|WP_021139757.1|1119276_1119741_-|thioredoxin-dependent-thiol-peroxidase
MQPLSAGTLAPDFSLSDQDGNPVRLSDLRGKKVLIYFYPKAMTPGCTTQACGLRDVNSELAARGVVVLGISPDPAKRLKKFEERDSLNFRLLADEDHAVADAFGVWGPKKFMGKEYDGIHRLSFLIDEEGKVVHRFDKFKTSDHHQVVLDLIKG
>NZ_CP022426.1|WP_017412149.1|1118332_1118833_-|YfbU-family-protein
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQEVIDTLELHHALAISWGNLDGADQSEITASRLEFNGYSRSQERELADYVCFLLEVDKRFPELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEIRKVLAA
>NZ_CP022426.1|WP_011899053.1|1117831_1118272_+|DUF412-domain-containing-protein
MSMNIFGTKLQQGRHYMTLWPRRPELNSMFPENRVIKATEFALKIIPALAVLSVMLQFQLGELHYWPSVMTSVLFLLSLPLQGYYWLGQRADTRLPPSLASWYREINGKMNEQGSHRQLVAQPRYEELADTLNAAFKQLDKSFLYE
>NZ_CP022426.1|WP_005311607.1|1116326_1117529_-|acetate-kinase
MSKLVLVLNCGSSSLKFAVIDATTGDDLLSGLAECFNLDDARIKWKLNGEKGSADLGAGAAHQEALDYIVNKILPLNPELSQNLIAIGHRVVHGGERFTSSVVICDDVIAGIEAAVPYAPLHNPAHLIGIREARRIFPALADKNVAVFDTAFHQTMPEEAFLYALPYKLYKENGIRRYGAHGTSHYYISLEAAKQLNKPVDELNIINCHLGNGGSVCAIKNGKSVDTSMGLTPLEGLVMGTRSGDLDPAIIFFLHDKLGMSVADINTMLTKESGLQGLTEVTSDCRFVEDNYDSKEEAKRAMDVYCYRLAKYIGAYAAAMDGRLDAVVFTGGIGENSAPIREITLNKLGLLGFDVDHDANLAARFGKGGEITKAGSTKALVIPTNEEWVIAHDALELVGA
>NZ_CP022426.1|WP_021139758.1|1114102_1116256_-|phosphate-acetyltransferase
MARTIMLIPVGTGVGVTSVSLGVVRAMERHGVNVSFFKPVAQPRPGETGTERSTAVIRAAANINPPEPFALSYAENMITSSNTDILLEEIVARFEEHVKASGAEVLVIEGMVPTDKQPFANKLNYDVAKALDADMVFVTHPGNDSSQKLKERIELACSNFGGVNNPRIVGCVINKVGAPVDEHGVTRPDLTEMFEAHHHASEAAHNLEVLQVFGKSPLRILGCIPWNTQLIAPRAKDLAKHLAAKILHKGELDSRRLQTVTFCARSIHNMVEHFRPGSLLVTSGDRSDVIVSACLSAMNGVKLGALLLTGNYHPEPQVMALCQQAMATGLPIMITGTNTWQTAVSLQNFNVDIPEDDRERIELVQDYVAGHIDKHWIESLSAKSTRSRRLSPPAFRYQLTELARQANKRVVLPEGEEPRTIKAAAICAERGIARPVLLGNPEEIRRVAEQQGVVLTDRVEIIDPLEVRERYVPRLVELRKSKGMTEVVAREQLEDNVVLGTMMLERGEVDGLVSGAVHTTANTIRPPMQIIKTAPGSSLISSIFFMLLPDQVLVYGDCAINPDPSAEQLAEIAIQSADSAAAFGIEPRVAMISYSTGTSGAGADVEKVREATELAKAKRPDLIIDGPLQYDAAIMENVAKSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSAELVSIGPMLQGMRKPVNDLSRGALVDDIVYTIALTGIQAAQAE
>NZ_CP022426.1|WP_021139759.1|1113079_1113574_+|acetolactate-synthase-small-subunit
MRHIISVLLENESGALSRVVGLFSQRGYNIETLTVAPTEDPTLSRMTIVTMGDERVLEQIQKQLHKLVDVLKVCDLSEGEHIEREIALVKARAAGGARDELKRLADIFRGQIVDVTPEQYTVQLVGTSEKLDVFIKTAAQTNEIIEVVRSGVCGISRADKALRP
>NZ_CP022426.1|WP_021139760.1|1111361_1113080_+|acetolactate-synthase-3-large-subunit
MEMLSGAQMVVRALEDQGVEHVFGYPGGSVLDIYDALFENGKMEHVLVRHEQAAVHMADGYARSTGKVGTVLVTSGPGATNCITGIATAYMDSIPLVILSGQVPTSMIGEDAFQETDMIGISRPVVKHSFLCKKASEIPDAIKKAYYIAASGRPGPVVVDLPKDVQNPKEKFPYQYPESVSLRSYNPTKAGHKGQIKRAAKLLTEASRPVMYVGGGAINANADQLVTKLAELLNLPVTTTLMGLGAFSGTHPQFIGMLGMHGTFEANKTMHNADLIFAVGARFDDRVTNNVAKFCPNATIVHIDIDPTSISKTVQAHVPIVGSVETVLEQMLEVIRECGFANDKQALSEWWEQIAQWRSRNCLAYETSPTLIKPQQVIEALYKVTKGEAFVASDVGQHQMFAALYYPFAKPRQWINSGGLGTMGFGIPAAMGAQFANPDAVVCCVTGDGSVQMNIQELSTCLQYGVPIKIISINNRALGMVKQWQKMFYGGRHSHSYMESLPDFVKLAEAYGHVGIAVSDPAELESSMEKAFAMKDRLVFMDISVDPDEHVYPMQIKFGAMDEMWLSKTERT
>NZ_CP022426.1|WP_010673158.1|1110818_1110971_+|hypothetical-protein
MRFTNENGDTMTLADNLTLHELLDMGVSISVCEETDPDQQIWLAEPEDEQ
>NZ_CP022426.1|WP_021139754.1|1122711_1123815_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MSLADQVLAVNDDLPIRTDKPVHSGKVRSVYWLTPEDSARLIKEKGYDVPADAPLALMVISDRISAFDCIWQGVDGLNGVPGKGAALNAISSHWFKLFKEKGLADSHILDIPHPFVWIVQKARPVMIEAIARQYITGSMWRAYKDGEREFCGITLPEGLKKDQKLPEILITPSTKGVLTGLDGVPEADDVNVSRADIERHYQGFNFSKPADIDRYEVLLKEGFNVISDALASLDQIFVDTKFEFGYVQDAAGNEKLIYMDEVGTPDSSRIWDGAALRDGQIVEKSKEGFRQWLLNHFPDPDILLNKNRMPERFALAKGNKLPTEVMMDISNTYVGIAEKIIGHPLVRSANPKQEIIEVLRDQFGLID
>NZ_CP022426.1|WP_021139753.1|1123946_1124543_-|short-chain-dehydrogenase
MKIVGASGTVGSAVSELLAKDHQVIRVGHSRGDATVDMRDPASIKALFAQVGQFDALVVASGSVAFNGLTEMTDEQWQVGLQSKLMGQINLTRAAIPNLNDKGSITLISGILSEEPINWGVSATTINGAIEHFVKAAACELPKGLRINVVSPTVLTESMDKYADFFPGFVPVPAAKVALAYQKSVLGVQTGQVFRVNG
>NZ_CP022426.1|WP_034523907.1|1124637_1125540_+|LysR-family-transcriptional-regulator
MMDIAHLASFYEVVQRGSFSAAADVLGVSKGMLSRHVSALEAALNAQLLQRTTRRLSLTEAGKTLYLQTGQIFALVRQAEEDIQALTEEDAGRLRFTCAVSTGDRMVSELLGHFAVLCPGVEVELNFTNAMVDMSQGENDIALRAMSSIPDNLVALPLGQLKDVVVASPALLVREGIPATPYELSSRPCLLQGSNPAWEQWHFRRGEEEAHILVQGKVRANHYSTVLQLARAGMGYAKCPLMLVEPALAAGELVTVLDGWQSGLHQIHVLHAQQRRVPRKIRLFKQVLAQWFAERPRYLL
>NZ_CP022426.1|WP_021139751.1|1125611_1126244_+|DUF2057-domain-containing-protein
MKSYQKWSGLTLLWSALGMSTAQAAVEVVVPPDFQILAVSAGKLQDEQHATLADGEQQLLVRYEGVIPSRNSSENDRQVRSDPQVVRYQASNQRLTLVAQQPADEQAMVAYAKAPVVTLQANGQALDTQQDAVVTSGMLIGMDWRARLEEYNRSGGKAALTMAGAATTVAAGKAVPAVATSELEGRLQQLFLQADPELRKRFVGWAVPRL
>NZ_CP022426.1|WP_005311624.1|1126315_1126753_+|HIT-domain-containing-protein
MFELHTRLQADTQLLGDLPLCRVLLAKDSQYPWLILVPRVDNLREIHHLAPAQQQQLMQESCAVATLMEQALSPDKINIGALGNLVPQLHLHHVARFTTDKAWPGPIWGAHPALPYDPQALRTQADSWRARLAHLAGFIPLCVDN
>NZ_CP022426.1|WP_021139750.1|1126851_1127550_+|DUF3334-family-protein
MIVTRADNDAVLTTEDVLLSLCHSVTGVLSAATQSQVRFSGMVQRISKTCLKPDIGCFVLFDGGFSGLVVINFSASAAMELYESYMLSMGLSKEDLAISHTSDEVSNVMGELMNQIVGSFTVKVGRDLQTHITQNQPKMLALNKQVMLSVDTNLDNPEARRVTFFTSRNNIFYLELAMDRTEFIRIHSDGMDEEELDPDALIAQTKLAASKPTPVAAKAANEHDDLLDSLGI
>NZ_CP022426.1|WP_021139749.1|1127619_1128618_-|DUF2860-family-protein
MRTLTLLSLGLLAANAAHADLGEIPKQSGWSGFLLGGVNAVSYKSNFYAGDDSNSRINDLGSPDSESGLTPLINADIRYTFADTRTQVFLGNLIQDAIRFDFTQQLGLRQEMGDKGIVATSLVFNAMPVELWSDPFATNVDRSSTDVKSKGVRFTWDKIWGSNFHGSLTSREVDLDEERSGQQYDLTHGTHYASMLDRNGKVHDMEISYQWHFGGNQLLEPAIIYKQARLDGSAESFKNTGLQLTYAKRGPQWSIVSNVYAGKRNYDEANPIFGQSADANEFAINGTFFWHSLFGVKDLAATFTAAYSTANSDISFYDSQATRVSTGLLYNF
>NZ_CP022426.1|WP_021139748.1|1128825_1131138_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKQIKSWAQYYVDLMTKLGLVRFSMFLATGIIVLAVSIQMGVTLFLRGTVDIVDLVRSVFFGLLVTPWAVYFLSIVVDQLEDSRQRLTRMVRKLQDMRERDLELNSQLQENISRLNAQIAETNRAETLRQQAIEDLENEVFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGRVEAELIGLTPFDVYKQEIANKVVETDKQVFTSNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGLLGFGRDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTPLDPRQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLSHAADVPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDSDPGEGSCFTTELEVDCVEPQVATSEQEMPTLDILLVEDVELNVTVACALLNKLGHEVKVARDGAQALAMANPDDFDLILLDIQLPDMTGFDVAAQLLARYGDSLPPMVALTANATGDRQYYRDRGLQDVISKPLGSRAVREVIGHLFADLADDEADEQADAGNQDALLDLAFLTDYADTVGKPVLLSSVELFEKMMPDYMAVLDSNMIAKDQAGVVEEAHKIKGAAGSIGLRRLQQLAQLIQSPDHPAWWENVEDWIESLRRECPGDIARLKRWLLS
>NZ_CP022426.1|WP_021139747.1|1131193_1132558_+|dGTPase
MYQRLIPSLRSHPWGEEDLLEATELDRARIVQAAPVRRLQQKTQVFPLDVKASVRSRLTHSLEVQETGRQISRRILAALPAGAVCEGAFINLVEMSCLLHDVGNPPFGHFGEQVMSQWLTQELDTLFAAALGQAPSPQWAELRQDLLVFDGNAQSLRLVHSLHELNLTLGQLAALCKYPQQPLPGLHYGQHHGWTSKRGIFFSEQPLYRSLSQSLGLAPGCRHPLVYIMEAADDISYCIADLEDAVDRRILSLSELQQALRLADEGSYMAGLLVDATASDRGFFPHFRQHLTHDLIALAAHTYVSEHEIILSGAYPQALLHGQAPAAMVLDTLKQVAREQVFMRPEVEALELEGYAALRGVLSTYACLLALPASQFERLLAGQGGSELFFARRLFHRLSARHLKAYRLAVANRDPRFDSGAEQEWYYRVRLLLDYVSGMTDTYALEEFRLLSGI
>NZ_CP022426.1|WP_021139746.1|1132880_1133084_+|hypothetical-protein
MSIELALLRTVESLIQKRITRLERRISYLHLSPALLKDIGLEGQNVQIAHIREQEYQTGFRLGNRIT

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Crispr_ID: NZ_CP022426_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_5

1190136-1190249

Orphan

Consensus_repeat	Method
CACAAGCCGGGCCGCTATCAGATAGCGTGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_5

>merge|NZ_CP022426|5|1190136-1190249|CRISPRCasFinder
CACAAGCCGGGCCGCTATCAGATAGCGTGAGAACCCGATATTACGTTCATCCGATATCCGTATCGGGTGTTGACGTTCAACGACACAAGCCGGGCCGCTATCAGATAGCCTGAG

>NZ_CP022426|5|5|1190136-1190249|CRISPRCasFinder
CACAAGCCGGGCCGCTATCAGATAGCGTGAG	AACCCGATATTACGTTCATCCGATATCCGTATCGGGTGTTGACGTTCAACGA
CACAAGCCGGGCCGCTATCAGATAGCCTGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_021138350.1\|1184573_1184909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021138337.1\|1200111_1201320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021138349.1\|1187062_1187920_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP022426.1\|WP_021138343.1\|1193667_1194225_+\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NZ_CP022426.1\|WP_021138339.1\|1196482_1198576_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP022426.1\|WP_021138353.1\|1181368_1182037_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NZ_CP022426.1\|WP_021138356.1\|1176422_1177721_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP022426.1\|WP_021138344.1\|1193158_1193671_+\|heme-utilization-cystosolic-carrier-protein-HutX	unknown	unknown	gnl\|CDD\|274986
NZ_CP022426.1\|WP_034523477.1\|1191122_1192154_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP022426.1\|WP_021138354.1\|1180358_1181372_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|225719
NZ_CP022426.1\|WP_021138355.1\|1177751_1180184_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP022426.1\|WP_017412471.1\|1185002_1186670_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP022426.1\|WP_021138342.1\|1194295_1194700_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021138352.1\|1182056_1182893_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP022426.1\|WP_021138338.1\|1198855_1199995_+\|3-phenylpropionate-MFS-transporter	unknown	unknown	gnl\|CDD\|236856
NZ_CP022426.1\|WP_021138341.1\|1194739_1195291_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP022426.1\|WP_021138348.1\|1188196_1189207_-\|NAD-dependent-epimerase	unknown	unknown	gnl\|CDD\|187563
NZ_CP022426.1\|WP_021138340.1\|1195311_1196295_-\|ChaN-family-lipoprotein	unknown	unknown	gnl\|CDD\|350609
NZ_CP022426.1\|WP_021138346.1\|1190319_1191108_-\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422
NZ_CP022426.1\|WP_021138351.1\|1182961_1184305_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_021138344.1\|1193158_1193671_+\|heme-utilization-cystosolic-carrier-protein-HutX	gnl\|CDD\|274986	TIGR04108, Heme_utilization_protein_HuvX, putative heme utilization carrier protein HutX. Members of this protein family are HutX, found paired with HutW in some heme utilization loci although not shown directly to be necessary for heme utilization. This protein is homologous to the heme carrier protein HemS, while its partner HutW is homologous to (but does not complement) HemN, the radical SAM enzyme oxygen-independent coproporphyrinogen III oxidase involved in heme biosynthesis.	1.01386e-85
NZ_CP022426.1\|WP_021138349.1\|1187062_1187920_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	4.59717e-40
NZ_CP022426.1\|WP_021138343.1\|1193667_1194225_+\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	3.2783e-108
NZ_CP022426.1\|WP_021138339.1\|1196482_1198576_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.15263e-133
NZ_CP022426.1\|WP_021138353.1\|1181368_1182037_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	3.66991e-81
NZ_CP022426.1\|WP_021138356.1\|1176422_1177721_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	9.45841e-165
NZ_CP022426.1\|WP_034523477.1\|1191122_1192154_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.71518e-78
NZ_CP022426.1\|WP_021138354.1\|1180358_1181372_+\|phosphotransferase	gnl\|CDD\|225719	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only].	4.51692e-68
NZ_CP022426.1\|WP_021138355.1\|1177751_1180184_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP022426.1\|WP_017412471.1\|1185002_1186670_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP022426.1\|WP_021138352.1\|1182056_1182893_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	6.76231e-139
NZ_CP022426.1\|WP_021138338.1\|1198855_1199995_+\|3-phenylpropionate-MFS-transporter	gnl\|CDD\|236856	PRK11128, PRK11128, 3-phenylpropionate MFS transporter.	1.25967e-124
NZ_CP022426.1\|WP_021138341.1\|1194739_1195291_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	3.68314e-44
NZ_CP022426.1\|WP_021138348.1\|1188196_1189207_-\|NAD-dependent-epimerase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP022426.1\|WP_021138340.1\|1195311_1196295_-\|ChaN-family-lipoprotein	gnl\|CDD\|350609	cd14727, ChanN-like, ChaN is an iron-regulated, heme-binding protein. This family represents a domain found in ChaN, a heme-binding/iron-regulated lipoprotein from Campylobacter jejuni. ChaN, possibly involved in the uptake of heme-iron, contains a pair of cofacial heme groups situated between two ChaN monomers. A single tyrosine residue contacts the heme-bound iron atom while the heme-binding regions of each monomer also have contacts to the heme in the complementary monomer. ChaN presumably associates with an outer membrane-associated receptor, ChaR. Campylobacter jejuni is an important cause of food-borne illness, and is dependent on iron uptake from the host. ChaN like proteins are related to the Tiki/TraB like family of proteases. Proteins containing this domain also include protein reticulata-related from Arabidopsis which may play a role in leaf development.	9.43464e-71
NZ_CP022426.1\|WP_021138346.1\|1190319_1191108_-\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	1.60681e-123
NZ_CP022426.1\|WP_021138351.1\|1182961_1184305_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.96238e-172

>NZ_CP022426.1|WP_021138348.1|1188196_1189207_-|NAD-dependent-epimerase
MKYLVTGAAGFIGFHVAKRLCEAGHQVVGLDNLNDYYEVSLKQARLARLLPFPHFHFEQRELADRDAMTNLFTSSQFERVIHLGAQAGVRHSLENPFAYADSNLTGMLTVLEGCRQHGINHLIYASSSSVYGLSDLMPFCAEQRVDHPVSLYAATKKSGELMAHSYSAIYGLPTTGLRFFTVYGPWGRPDMAIAKFTRAILAGEPIDVYNHGDLSRDFTYIDDIVDGILAIAELPPRANPHWHASQDSQAESAAPYRILNIGNGQPVRLLDFIEALEQALDKPAIKRMLPMQAGDMHVTWADSEPLHTLTGTCPATPLRQGVAEFVRWYLDYYRPG
>NZ_CP022426.1|WP_021138349.1|1187062_1187920_-|lytic-transglycosylase-domain-containing-protein
MASLSENRLFLLLFLSLLLAGTVQAAAQSRDFRQAPKALTALKKGQVAQSQGNLTQAIHFYCAAATTGNPEGYFRIGRLLATGPGSVRNPKMANAYLAMAIRLGNQQAARYYNARIGNAIMGDQCGAGVGGGAGSYFAEIPNTPFNLDAYLARQSPTKQKLAAMFRHAAKHHSLDERLVLAIAIAESNLNSRAVSPKNAQGLMQLIPETQQRFGVTRPFDPAQNIKGGVTYLKWLDRRFDGNWILMSAAYNAGERAVEQYGGIPPYQETQQYVRRVLYFAGHKGK
>NZ_CP022426.1|WP_017412471.1|1185002_1186670_-|energy-dependent-translational-throttle-protein-EttA
MAQFIYTMNRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPKLDPEQTVREAVEEAVGDVKRAMARLDEVYAAYADPDADFDKLAREQGELEAIIQAQGGHNMENQLERAADALRLPAWDAKIQHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDARLAQEASSEAARRKSIEKELEWVRQNPKGRQAKSKARMARFEELNTNDYQKRNETNELFIPPGPRLGDKVLEVANLRKSYGDRVLIDDLSFAIPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVVLASVDQFRDSMDDKKTVFEEVADGQDILRIGNYEFPSRAYIGRFNFKGADQQKRVGELSGGERGRLHLAKLLQTGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGNIAFFEGNFTEYEEWKKKTYGAEAIQPHRAKYKRITK
>NZ_CP022426.1|WP_021138350.1|1184573_1184909_-|hypothetical-protein
MTTQTPTEKKLTIQIRVEPGCLGPDGKEHIETFCVAAAKIFAAIYPELVSWVLIPRYDKQLPEQEFFIEGRKLTEEQASLFLRRVGRELGEVQDRLDSVLAQLVERYFKTL
>NZ_CP022426.1|WP_021138351.1|1182961_1184305_-|NCS2-family-permease
MNQQHQAANQAAGQGLLERLFALQGHGTTARTEVIAGITTFLTMVYIVFVNPQILSAAGMDTQAVFVTTCLIAGIGSILMGLLANLPIALAPAMGLNAFFAFVVVAGMGYSWQVGMGTIFWGAMGLLILTLLRVRYWLIANIPLTLRVGITAGIGLLIALLGLHNAGIVVASPATMVTVGDLTSLPCLLGLLGFFLICIFSARGVHSAVLIAIVVTTTLGWLFGDVTFKGFVSMPPSIAPVFGQLDLMGSLDISLAGIIFSFMLVNLFDSSGTLIGVTNRAKLADDKGHFPRMKQALLVDSVSSVGGAFMGTSSVTAFIESSSGVAVGGRTGLTAIVVGLLFLLAIFFSPVAAMVPAYAAAGALIYVGVLMCSELTRVKWEDLTEAVPAFMTAVMMPFSFSITEGIAIGFISYCVMKAGTGRWREINPCVLVVALLFVLKFVWVDSH
>NZ_CP022426.1|WP_021138352.1|1182056_1182893_+|co-chaperone-DjlA
MRIWGKVLGAFFGFLLGNIFGALLGLWIGHRFDRGMGIRGAFQRGPSQQQQAVFFHATFAVMGHIAKANGQVTEQEIRVASNLMDRMRLVGDQRARAQESFRLGKEAEFPLRETLAEFRRASLGQRDILRFFLEVQLQAAFADGKVEADERAILHTIADELGFSRIELARILAMAEAQMNFFNRAHGGQYQGGEHGGQQYRQDAPSADRLKDAYQLLGVSESDSDQDIKRAYRKEMSKHHPDKLAAKGLPPEMMEMAKEKTQEIQQAWEWIREARGIR
>NZ_CP022426.1|WP_021138353.1|1181368_1182037_+|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDTLPKPLLAAGGKPLIVHHIEKLKAAGVTELVINHAWLGHKLVEALGDGSAFGVSIHWSAEASALETAGGIVQALPLLGADPFLVINGDTWLSLDYRTLVNQPLGTDLAHLWLVPNPPQHPHGDFSLHAGRVQDAPAFTFSGVGLYDPAAFADLPSGARKLAPLLRDWMAQGRVGGAMLAGEWRDIGTTERLRELDDQLQRRTH
>NZ_CP022426.1|WP_021138354.1|1180358_1181372_+|phosphotransferase
MYDRDSLLLQWARRISGDANLELTLISGDASFRRYYRGGGLVWVDANPKTEKNHEFVRNASALHAMGLLAPEVKGVDYDDGLLAVTDLGDTQLISCLDAQNVLAWYGKAIALLPRLGAVALALEPFDAAFMARENSIFPEWLLGHHLQLALSESEQQLLDDMFACLTASNLAQPQGVMHRDFHSRNLMVCGGDTPNGSELAIIDFQDMVIGPLSYDLVSLLKDCYVRWPDDVIEQGMRHGFDTLQQAGLLGGLDYASFRRHADLTGMQRHLKAAGLFTRLYHRDGKSGYLKDIPRTLGYVMDVCQQHGASYPELARFGAWLQQVVLPGLARVAGVPV
>NZ_CP022426.1|WP_021138355.1|1177751_1180184_-|LPS-assembly-protein-LptD
MTKWTLGYSYPIALTISLIPALTPAIVQAAPLTPPPATGILDGLCYDYVPKVEKLAPGKDANAQPVEVDADRLEAKQGGTAVYQGDVKVRQGVRKFDSDYAELDQKSRDVIAIGNIYYNDGQITVTSDKTLKSNLDTKNSELEEGKYQVHGSPVRGSADRVTMTNNNQNITLEGAQYTTCPPGQEVWTLKAGSIDIDQTEVFGEAWNASLWLYDYPVFYFPYINFPIKDERKTGLLYPGYTQSSKNGMDITQPFYWNIAPNYDATITSRFMDRRGLMEQVEFRYMPDPAHAGSLYFENLADDKQYDETPSLNEKLSDGHRYLLNARHSSRFADNAMQVSIDYTKVRDRDYNYFNDFSPKVGTQVENQLQQSLMAGYFQQNWNLNTEVRTYQILLASAQQPHELMPRINHNYYHQGNWYDLAWNTEVTRFGYNNTQASAQNLGDAYTGTRVYTAPTLTMPLIDEAGYYLDSQYKLMYTRYDQEVPDNMSSTFTKRFTPEGASGVTLDEGIITRTLPSFRLKGGMTFERNQDWFGGDANQTLEPEFQYLYVPYKDQDNIGVYDSTTMRQDYYSLFSDRRYAGLDRISDSNRVSLGVTTRVYDQAGDERIRLAVAQAFDFVAPRVKLYPSESLATNTRSPLSFEGDAKINEQWFAHAGAQYDMDQSEISSANSALEYRREKLISQLNYRFVRNANYDLSNTNQVADLNQVGMLLTTPLNDQWHLYGGYYHDLDQGVKVDRKVGLKYDSCCWSINFNLEWVNTPDNVTMRPTSERSLGIQFEMKGLGSVGTGSKGTSLDTEALPYIRPFNLRDQ
>NZ_CP022426.1|WP_021138356.1|1176422_1177721_-|peptidylprolyl-isomerase-SurA
MKKTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKSSAQESGQSLPDDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAADNKMTLDQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVRRRINISDQEVKQVVDILSKQGQQQQQYHVGHIQIALPDNPSAEQLNAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDWGWMSPQEMPTLMAEAVQGAAKGDIVGPLRSGAGLHIVKVFDAKGQQQVLQTEVKARHILIKPSIILSEEKAKGMLDGILHDIKSGKATFASLAEKYSEDPGSAVQGGELGWSDPNVYVPEFRDMVNRLKPGELSAPFRTTHGWHIVQLEERRSQDATSKAQEQRAYQLIFNRRFTEESQAWLDELRDEAYIQIEGAGS
>NZ_CP022426.1|WP_021138346.1|1190319_1191108_-|heme-ABC-transporter-ATP-binding-protein
MSISSPLLRCHQLSLTRGGRPILDRLDLTLQGGTLTALLGPNGAGKSSLLKCLTGELEYEGEINLFDRERQAWASRELAHRVGVLPQSSSLNFPFLCEEVVAMGRLPHTEPGSRRDEIVRAAMTHAGVDHLARRLYPGLSGGERQRVQFARVLAQIWQAPDDPQQARLLLLDEPTSALDLKYQHQLLTMARALAARNTAVLVVLHDLNLAARYADRLVMLDQGRLMADGTPAEVLTPALIDRLYDYPAQVIHHPETGLPMVV
>NZ_CP022426.1|WP_034523477.1|1191122_1192154_-|iron-ABC-transporter-permease
MMRLPLPWLLCLTSAALALLLVGSLATGPMALSLGESLRALFAGQESGIEAHKLLIVQEIRLPRTLLCIAVGGILGLCGAVMQGLFRNPLADPGIIGVSGGAALGAALAIVLLAPLGQQWQSLLGIGLLPLLAFLGGALTTTLVYLLGTREGGTSVTVMLLAGVAITALSGAVIGLLTYLADDQMLRNLSLWQMGTLAAGKPVDVVLALLTLAALLLLFMRDANPLNALLLGEGEARHLGVNVQSLKRRLILLTAAGVGVAVAVAGMIGFVGLVVPHLVRLLAGPNHVRLLPLSALLGAALLLGADMLARTLMAPAELPVGIITALLGAPFFLWLLVKGRRTL
>NZ_CP022426.1|WP_021138344.1|1193158_1193671_+|heme-utilization-cystosolic-carrier-protein-HutX
MSIAQRIHELLEQDPSAHPSSIATQLAVSEWEVVRHLPDELVTLVPAEQAEALLADLADWGQVTTIVESDGSIFEVKAPFPRGKNARGYYNLMGRDGEMHGHLKLDNVVGIALVSKLFMGKEGHSFQFFGHSGRCIFKVYLGRDEQRKLLPAQVERFMALRHQYQEEVKA
>NZ_CP022426.1|WP_021138343.1|1193667_1194225_+|heme-utilization-protein-HutZ
MSERQERLQNRLQPEIREFRDGCRTLQLATVDSEGNPNASYAPFVLQEDGYYVLISEIARHARNLQQVPKVSLMLIEDETGARELFARKRLTFDALAEVVGRDDVRWSQAIAALEGRFGEIVKGLSNLKDFVLFRLKPEQGLFVKGFGQAFRVSGDELVDFVHLVEGHKRVDNGAELTSPADAPV
>NZ_CP022426.1|WP_021138342.1|1194295_1194700_-|hypothetical-protein
MRLLSAVAFMLLLPAISACSGLPGRQPDGPAPLFRTQINEEGSKRFTFEAAPFDTLPTRLEENDGNRLSRSKSLLEQREALQDAQLTQTLAERKYCHNGYIILSQTSWKIRGECNETASQADRDAFPNKASWQD
>NZ_CP022426.1|WP_021138341.1|1194739_1195291_-|cysteine-hydrolase
MDVLLVIDMQQGLFAHPRHQDAQVIANINRLADSVRANQGRVIYVQHDAPGSELEPGSAAWQLHADLIPARSDSRVSKTACDSFLDTELGFLLAEQAVDRLLISGCATDFCVDTTLRSAAARGFDVFAVTDAHTTADRPHLSAEKIIEHHHWMWEHLSLPKGRTVTLLTTDALLEATQPELVC
>NZ_CP022426.1|WP_021138340.1|1195311_1196295_-|ChaN-family-lipoprotein
MTRLLPLLTLPLLLAACATPPSDDAGTLYHYQLSAGQSDAGQGELTLTQAVDRVADADIVLVGELHTHTAVHLLQARLLAGLEEASRADGRALVLSMEQFSRADQAVVDAYLAGRIGEAALIRDGNAWPNYQSDYRPLVEFAKQHHLPVIAANAPKPLVSCVGQEGPQWLDKLPANRRSQLARELTLTDDPYRQKFMASLHHGDADGNARRFAAQTSWDDTMAESMVDYLKQHPGRRIMHIAGNFHVEGGLGLASRIASRNPALKVALVVPETLSQTNAQIPAGQVADIRARITPLPERWLNADEMKQDMGALHQSRSRDCSQWLQP
>NZ_CP022426.1|WP_021138339.1|1196482_1198576_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MAHNNTLSLVALAVAAGLASPVFAADKKADEVMVVSGSRMEQKLEDVSGPITVITARQIEEQAVSNVADLFRYEPGVTAIGGAGDAQTFVIRGMGENRVKMVRDGVRQNDAYKNGGVGQSYFDTDMIKQIEVVKGPASAAYGSDALGGVIAITTKDASDFLRGRDSYLDVTSGYASSSHQNMAGFTGALRSGEFENLLRYTWRDGGVTQNYDGDKKEFDIVSQAVLFKSQWNLSDDQFLKLTVDYFNEGQDPDAVDLTKAGSVFNQPITDKDTDNLSLMLDHGIALNAPWVDRIDSKVYYARTKQTLDQYASSKYPVRPGNPYVTKNSLDSNGFEQESLGAQVKFSKALASQRLAWGLEYEHTDNERTRFKAPTTPGDFVGYSELSFPSTTTEHGALWAFDELKFGERWVLTPGVRYDYYRMTPDQDPAYTGENLKKFSEGEFSPKLGLVFKAHEAANLFAQYSHGYKTPMYDNAFSTLNHQAYGYRIEPNANLKPESSDGIDLGVRGDAGGFSYEVATFYNKFDDFIELAQVGTEGRTALYQYQNLDKATTKGVEAKADYWLNDLVNVWGNLAYIEGKDGDGNYINSLSPLNGSVGVRLEQANWNINTALRFADDMDKVGKDARGNDNIKSAGWGVVDLYAQFKPIQDVQLNVGVFNLFDKEYVSYENITGQSATANTSNKTEPGRNLSARVKYVF
>NZ_CP022426.1|WP_021138338.1|1198855_1199995_+|3-phenylpropionate-MFS-transporter
MPAFSWLALFFGAFYFVYGAYLPFWSLWLEGIGVSAEMIGLLLGAGMAIRFAGNLMVMGQIKGAGHLLPITRLLCLLSLLAFLGFYLSHNLWWLVGLTLVANFIYPTLMPVGEALATRMVVQAHLDYGKVRLCGSFAFIVASTLVGSLVGNFGSDWVLHTMVAGLLLMLLLSWLPLHPAPRDIQGERAKASLLDTLKSPSVRRFLLISALLQGSHAAYYGFSAMHWKAAGYSGTTIGYLWALGVVAEIGMFAADKRFLNRFGAQTLFLVGAIGCVVRWSLLGASTDMVVLVAGQLLHAVTFCVSHLGAVRFMTRQLPTEQLIPTQALYAALGLGMTVAALMTLSGLLFEPLGGGIFFIMVLVVLPVFFLRLRPGEATSA
>NZ_CP022426.1|WP_021138337.1|1200111_1201320_-|hypothetical-protein
MTLPPVIQSLLLLPFWGAAVEAPPGPSYQLMASAKPDTLQIRFTPEGAQPFTLLPARTLRGIPQQGLPALTCLESGARVKPGQPIRCRELSWQVTLKPVPATGADASAQQNLYFPQGGWLVTEWGNFPRQQGAQPGRVCLPDGQCHPMPRMDEPPLLLPFALPATTQSRQGARLQIHYDGVAGALNIASLQKKLEAIIDYLAFQLDAPPPRQPWQLVWLARDISTHSLGGAAGVGAFVANYPVSDNQPTADAPLRLLRTSAHEAVHMLDTRARPTWVAESLAEYLAIKSLHRFRLDTTTAADELAQREDRLPHAKAGLYRASDAVKAGDLSYYPLFYVKGSAFWEALDLALQRHHRTLSALLPHLSWQEDGRFDAASSTLLAGTLGAEVWHSLISRYLSEQA

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Crispr_ID: NZ_CP022426_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_6

1495353-1495458

Orphan

Consensus_repeat	Method
TCAGTTATTTCAAATAACTGTGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_6

>merge|NZ_CP022426|6|1495353-1495458|CRISPRCasFinder
TCAGTTATTTCAAATAACTGTGACCGCGACAGAGATGGGGTCAGCAGCATCCGGTCAGGGATAACAGTGCGCGGCGCCATGATCAGTTTTTCAAATAACTGTGACC

>NZ_CP022426|6|6|1495353-1495458|CRISPRCasFinder
TCAGTTATTTCAAATAACTGTGACC	GCGACAGAGATGGGGTCAGCAGCATCCGGTCAGGGATAACAGTGCGCGGCGCCATG
ATCAGTTTTTCAAATAACTGTGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_034523699.1\|1496200_1497046_-\|solute-binding-protein	unknown	unknown	gnl\|CDD\|225544
NZ_CP022426.1\|WP_034524650.1\|1505323_1506241_-\|IS5-like-element-ISAs13-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP022426.1\|WP_021139051.1\|1487049_1487493_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP022426.1\|WP_005353771.1\|1500860_1501739_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378934
NZ_CP022426.1\|WP_021139053.1\|1485459_1486308_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|377459
NZ_CP022426.1\|WP_021139052.1\|1486300_1487053_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|378264
NZ_CP022426.1\|WP_021139044.1\|1494622_1495318_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224047
NZ_CP022426.1\|WP_076611119.1\|1502727_1504341_-\|IS1634-like-element-ISAs25-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP022426.1\|WP_021139093.1\|1507117_1507696_+\|DUF3305-domain-containing-protein	unknown	unknown	gnl\|CDD\|371702
NZ_CP022426.1\|WP_021139049.1\|1488323_1489619_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP022426.1\|WP_021139041.1\|1497296_1498652_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP022426.1\|WP_021139046.1\|1492261_1494007_-\|bifunctional-molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB/molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|237729
NZ_CP022426.1\|WP_021139048.1\|1489697_1491071_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP022426.1\|WP_021139039.1\|1501742_1502600_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|376873
NZ_CP022426.1\|WP_021139040.1\|1498677_1500780_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP022426.1\|WP_021139050.1\|1487595_1488060_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP022426.1\|WP_166507328.1\|1504533_1505343_+\|DUF4935-domain-containing-protein	unknown	unknown	gnl\|CDD\|350257
NZ_CP022426.1\|WP_021139045.1\|1494003_1494651_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP022426.1\|WP_099368928.1\|1506408_1506726_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021139047.1\|1491139_1492198_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_034523699.1\|1496200_1497046_-\|solute-binding-protein	gnl\|CDD\|225544	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism].	2.77981e-112
NZ_CP022426.1\|WP_034524650.1\|1505323_1506241_-\|IS5-like-element-ISAs13-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	8.9842e-46
NZ_CP022426.1\|WP_021139051.1\|1487049_1487493_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.54908e-11
NZ_CP022426.1\|WP_005353771.1\|1500860_1501739_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378934	pfam12727, PBP_like, PBP superfamily domain. This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain.	1.49577e-45
NZ_CP022426.1\|WP_021139053.1\|1485459_1486308_+\|DUF692-domain-containing-protein	gnl\|CDD\|377459	pfam05114, DUF692, Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.	1.49058e-132
NZ_CP022426.1\|WP_021139052.1\|1486300_1487053_+\|DUF2063-domain-containing-protein	gnl\|CDD\|378264	pfam09836, DUF2063, Putative DNA-binding domain. This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, Structure 3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.	1.82714e-19
NZ_CP022426.1\|WP_021139044.1\|1494622_1495318_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224047	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism].	6.66837e-46
NZ_CP022426.1\|WP_076611119.1\|1502727_1504341_-\|IS1634-like-element-ISAs25-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.17671e-57
NZ_CP022426.1\|WP_021139093.1\|1507117_1507696_+\|DUF3305-domain-containing-protein	gnl\|CDD\|371702	pfam11749, DUF3305, Protein of unknown function (DUF3305). Several members of this family are annotated as being molybdopterin-guanine dinucleotide biosynthesis protein A; however, this could not be confirmed. The family is found in proteobacteria.	2.53904e-26
NZ_CP022426.1\|WP_021139049.1\|1488323_1489619_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	4.47993e-42
NZ_CP022426.1\|WP_021139041.1\|1497296_1498652_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.14631e-172
NZ_CP022426.1\|WP_021139046.1\|1492261_1494007_-\|bifunctional-molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB/molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|237729	PRK14491, PRK14491, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional.	0
NZ_CP022426.1\|WP_021139048.1\|1489697_1491071_+\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	5.96839e-62
NZ_CP022426.1\|WP_021139039.1\|1501742_1502600_-\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|376873	pfam02634, FdhD-NarQ, FdhD/NarQ family. A pan-bacterial lineage of proteins. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity. Structurally, they possess a deaminase fold with a characteristic binding pocket, suggesting that they might bind a nucleotide or related molecule allosterically to regulate the formate dehydrogenase catalytic subunit.	3.56609e-100
NZ_CP022426.1\|WP_021139040.1\|1498677_1500780_+\|HAMP-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.23468e-57
NZ_CP022426.1\|WP_021139050.1\|1487595_1488060_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.69771e-14
NZ_CP022426.1\|WP_166507328.1\|1504533_1505343_+\|DUF4935-domain-containing-protein	gnl\|CDD\|350257	cd18690, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_12.	4.35937e-62
NZ_CP022426.1\|WP_021139045.1\|1494003_1494651_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.21018e-88
NZ_CP022426.1\|WP_021139047.1\|1491139_1492198_-\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	4.61098e-23

>NZ_CP022426.1|WP_021139044.1|1494622_1495318_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MALTAHQLMMRFGERNLFQIERLSIAAGDAIWLRGANGVGKTTLLKILAGLLTPTRGHTNLACGWRARLAQWIKRDPGPGLVTYLHQTPYLFDRSVHDNVAWALGNQAADEVRVFEALRRVELEGLAREHISILSGGERQRLAMARAWALQPAFLLMDEPTANLDAHSVALMAALAQDLREQGSGLVIISHQSNDLTDLCERQWTLARGRLHEPTPLKIIERHDLKQRIQN
>NZ_CP022426.1|WP_021139045.1|1494003_1494651_-|molybdenum-cofactor-guanylyltransferase-MobA
MTSNSESKTDVFPVSAVILAGGRATRMGGEDKGWVALAGRPLIDHVLERLRPQVDEVLINANRSQDRYQALAPVISDDNNDYLGPLAGMQAGLAAAHHDWVLFVPCDGPALPHDLMSRFRAALTPDTELVVAHDGDWLQPVVALLHKSLLPSLTHALAEGERKIDIWFARHKMAVVSFADQPDAFINLNSPAELAAYEARLLNSSTDPQQGATAS
>NZ_CP022426.1|WP_021139046.1|1492261_1494007_-|bifunctional-molybdopterin-guanine-dinucleotide-biosynthesis-adaptor-protein-MobB/molybdopterin-molybdotransferase-MoeA
MTPAPTLPLLGFAAWSGTGKTTLLEQLIPILVSRGLRLGVLKHAHHDFDTDQPGKDSYRLRKAGADQVMAASRRRHARIVETPDAEPPFHALLASFDQTRLDLLLVEGFKHEHFPKIELHRTALGKPLLFPDDDDIIALASDTPQETTLPQLDINDLAAIADFVCGYASKAGHAEQVPGTGFLSVEAARSAILDALTPTTRSTDSPLALCHGAVLASDLVSPINVPPHANSAMDGIGLRGDDLAAGRWQLVGQVLAGQQRHEPVLAGQAVQIMTGAPLPPDVDTVVMREETNIEGEWVTVSAPIKAGQNVRLAGEDLAKGAVAIPAGTRLGAPQLGLAASLGQASLSVRTPLKVALFSTGDEVQAPGETLAPGHIFDSNRFTLMALIAAAGCEVMDLGIIPDDPAILRQQLEQASTSADLVLSSGGVSVGNADFIKQVLAELGQIAFWRIQMRPGRPLAFGKLGTTPFFGLPGNPVAAMVCFLQFVEPAIARLQGRGWQPLRLSAQAEQQMKSRPGRTEFLRGVFHQDASGVLRVRTTGPQGSGILSSMADANCLIEIVPAQPAIAVGERVWIHPLQGRVA
>NZ_CP022426.1|WP_021139047.1|1491139_1492198_-|FUSC-family-protein
MRLNTPLSRLDLLIYGRYRIVHGLRIALAFMLTFLLTRELKLPESTWPLITLVVVMGPISFWGNVLSRALQRVVGTIFGAGCGVVALYLELYSLPLTLVWCGCIMFLCGYLALGKRPYVGLLIGITLGVTMGAMPGDIETALWRSADVILGSLLALLFCSIYPQRAYSHWRLQMHDTLLQAHRLYHTHLSPNILERPRLAQSHSRLLSKMVSLRPLLAPAVKETRLGSALFEAIQTTMRNTLCTLEMLANTYWSDRQSHFLMQSTPELRACQQATEAVMTELALMLKSGELKGAEQAISELQEAATRVRLDARGEAAISGYLWLSLQLTEQLTHLRRLLGLVMYPPRSQSHI
>NZ_CP022426.1|WP_021139048.1|1489697_1491071_+|HD-domain-containing-protein
MTFSGLRLSELIGSLSHALDMTEGQPRGHCIRCCWIGSRLGERLGLDAGQRHDLYYTLLLKDLGCSSNAARICELYLTDDLHFKRDFKLVDGSLSEVVNFVLGHTGLQADLLGRFRSLFHIFRNGDQIANELIQTRCHRGADIARQLRFSDEVAGGILSLDEHWNGKGRPLQLAGEAIPLFSRIALLCQVVDVFHAAAGPEAALKEVRERSGSWFDPELVRQFEAMADEPFWQGLADPQLAEWVFIHPAGQGEVALDEDYLDEIAAAFGQVVDSKSPYTAGHSGRVALYTDILATQMGIPEPRRRWLKRGALLHDVGKLGVSNAILDKPGKLDAQEWAAVRMHAAYTEEILSRICAFKELAQVAGAHHERLDGKGYPKGLKAEEIALETRIITTADIFDAITAKRPYRGAIPVPQALEMMAEQLGSAIDPDCFAALEAGIKDFSIYLTAEQPLADAS
>NZ_CP022426.1|WP_021139049.1|1488323_1489619_+|PAS-domain-S-box-protein
MFNNKLKAQLLACQMQVGELQGFVDAVKGGVATIIFIPDGGILEANEPFLNLMGYSAAELQGQHHRMFCSKALAQSSDYQQLWTQLQQGRVQSGIFPRINKRGEALWLEASYFPVKQQGRVTQVIKIASDVTEHHQRLLSQEAVSKALDRSLAMIEFTPTGEIVTANANFLSCMGYSLSQIKGHNHRMFCDDAFYREQPRFWEELAQGQFKSGLFLRRNSHGDDIWLEATYNPVRDESGKVTKVIKLATDITERVIKSHAIRDAAQVAHATAQETLRSAEQGADLLRSVVETSSLVSEQVDKTIQLVNQLNEQSKSIEAIVSTISSIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAARTSLSTDEIAKVVQKNRELTARVTDDMARVASSAELGKQQVDKVNEVMVEIRQEANNVSATVSSLSI
>NZ_CP022426.1|WP_021139050.1|1487595_1488060_+|GNAT-family-N-acetyltransferase
MIIRQADMADIPALVSLRMGLFCEVGELADPLADLDLWQATSAYFSEGQADGSARSWVAEVGGEVVTSGTLALFVRPPYPGNVSGKEAYLLNMYTLPAHRKQGMASALLDAMVAHARAEQLGKVWLHASEQGRPLYERMGFVANPACLEWQPAV
>NZ_CP022426.1|WP_021139051.1|1487049_1487493_+|DoxX-family-protein
MMGNKWLALASSSGDLPRWMSGAVLLLARLWVASVFITSGWLKLTAWDSTLYLFESEYQVPLLPWLWAAYLGTATELLLPLFLLAGLFTRPAALLLFGFNIMAVISYPTLWAGGFYDHQLWGWVLLTLTIWGGGVLSLDHWLTGRRR
>NZ_CP022426.1|WP_021139052.1|1486300_1487053_+|DUF2063-domain-containing-protein
MVELKQLQRHFADGLLGEPATISPHISSRLFPAESVLQVYRNHFILSLGEVLASSYPAVKAMVGDEFFVAAARGFVLDEPLQEGNVMHYGAGFGQWLARLPTTAELPWLEALAQFEWQLERASLLPLESRCWPAERLAGLSPPQWERLRLLPATDLLLVASDYPVLALWQMALHGGEAVGDLCAPVWLVLKKQLDYRVTRLPLEAGEWALLQGCLEGRPLATLLATDPRASDHLTRLVMLGLLVDVEVMP
>NZ_CP022426.1|WP_021139053.1|1485459_1486308_+|DUF692-domain-containing-protein
MNPLIGIGLRTPHYDGIRQTLPAVGWLEVHSENYFEPHSQGFQVLSELAQHYPVSLHGVGMSLGSADPLEQRHLQQLSSLAAAIKPVRISEHLSWGSIGGRYFNDLLPVPYTRQSLRNMSDKIQQVQQTLGCRLLMENPSSYLQLAGEMSEWEFLAELQQHSDCGILLDLNNLYVSAFNHGFSCDEYLATIDLATVGEIHLAGYTEKQLPEGALYIDTHSAPVVEPVWELYRQICRKQAIPTLIEWDLEIPPLPVLLVEAEQASAILDAAQAANMVRELAHG
>NZ_CP022426.1|WP_034523699.1|1496200_1497046_-|solute-binding-protein
MITGTVRQRLALALSTALLLSLPLLSTVSHAESAKAPIRLATTTSTEQSGLLGWLLPQFTKETGYPVQVMAAGTGQSLKMGENGDADLVMTHAPSAEKAFVDAGFGIEPVHLMYNDFVIVGPRQDPAGLTKLHDAAKALQAIKDKKQTFISRGDESGTHIKEKTLWQAADVKPEFAGYKSIGQGMGPTLTMASELGAYTLTDRGTWLAYQSKLDLAVLLEGDKRLFNPYQVILVNPKRYPDLNTEGARTLKNWLVSEHGQTLIGDFKVAGQALFVADASGK
>NZ_CP022426.1|WP_021139041.1|1497296_1498652_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MTAPASRWSALSLLIVDDEPGMRSFLAKALARRFAQIETAASVEEAEALRCRLHFDLIIADIRLPGRSGIEWHEAIDPATRRSDIIFMTGFGDMETALKALRLGASDFILKPFNLDQMVQAVDRVIERRQMERENLLLRREVSKLFPPTLIGDSAKTRELKTLIARVAPSNAAVLVEGESGTGKELVARALHQLSGRMGAFVPLNCASIAPELLESELFGHVQGAFTGARKGRDGLFRVAHQGTLFLDEIGEMPLAMQSSLLRALEQKAIRPVGAERELAVDVRIVAATNRNLKAEVEAGRFREDLFYRLNVVALPVAPLRERIDDIPALVHHFTRQLTAEMGMGSLSWTHKDVVAMQAYPWPGNVRELRNLIERCLLLGKPPADYWQSSKPAEQGASEEGYPLAWPLAEVEKAHILQVVASHDGNKSAASRVLGVARKTLDRKFKEWAIE
>NZ_CP022426.1|WP_021139040.1|1498677_1500780_+|HAMP-domain-containing-protein
MKLTLLSRCMRALLPRCVRTKVRWRLLLLTSVPIMLTLVGMIALTLYWTLTYSWQNLLTTVRSDLGVAHHAITVQQQRQTEHLEHLRDAWAFQLRLRESPDQLQDWVMPLAANYGLDFLRLRQGPALDQLTAQERAALTAGRSVSHFVVWSQQEMLALSPQLAKRAVLWQRDGTRAVENRGLISLSLTPVMGRDGSLWAVLEGGELVNGSTRLVDELKGQVFAKNTLPDGSVGTVTLFLDDLRVSTNVPVSSSRQVGRAVGTRVSPPVREQVLGRGEMWVDRAFVHDAWYVSGYEPLLGARGERIGMLYVGFLEWPIIRTYLTNLVELGSGVVLLLLLSGLLVYRGARDLFSPIERMHKVVRQVQAGESARIGPLALDPDHELAQLGRQFDAMLDRQEAHQQQMARSADELEQKVAERTQSLELKTAELEDHIHMLTEARQQLLISEKLAALGELSAGVAHEINNPLAVILGNVELMKLELGEAAEPVSEELALVLAQIERIRAITRSLLQYSRPGDYETAPVWQHLNPIIEESLTLVRSALRQQQVELVADLRAQQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWVDELGQLRGAEVRVIDNGSGIEAAIIDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVDSTPGQGSCFTVRLRSHALLPSGSEPAKLEGWRIALNAEGRETSD
>NZ_CP022426.1|WP_005353771.1|1500860_1501739_-|helix-turn-helix-transcriptional-regulator
MNEFMNVKQVAEYLDLNEKKVYQLANEARIPATKATGKWLFPRSLLDRWLLGSCHEGVMNDRLLLAGSDDVLLHYASSRLAQQLGTQALVGYTPCGTRQGLAMLARGHVDLCAIHWGQAEEAHLRHPALVQQYQGHRQWVIVHGFRRVQGLVLRQGLQPKEAKEALDWRWAMRQEGAGSQRALQEWLQTQGESLTRLERTLEVNSERELAAAISRGDADVGPGAQSTATEFGLGFMPLSQECFDLVMPQGVFFRTLLQQLIGWLQSPEGRELAARLGGYDLTQSGKLVWSPQ
>NZ_CP022426.1|WP_021139039.1|1501742_1502600_-|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MTPTFIKSNAAAQLTMAVEVMDEQGTMNTRQIACERPLTVYLNWKEIVTLMTLGARPEALVLGYLKNQGFIEDIAAIESVIVDWESEAAAVVSSQQAADLDKSLEKKTVTSGCGQGTMYGSVMKKLEGVVLAAPELKQSTLYALLKALSAHNETYKMAGAVHGCAICRGSEILSFVEDVGRHNAVDTLAGELWMRGESGSDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDLARQLGITMIARAKGRHFEVFSGHDHIELDEKPPVLAPGSAGRGMRD
>NZ_CP022426.1|WP_076611119.1|1502727_1504341_-|IS1634-like-element-ISAs25-family-transposase
MAAPAISIRNLDHLGLVAALCQELGIARMIDALLPKTPPFKVSHGEALVAMIVNGLGFHSSTLHMFPQFFANKPVERLIGPGICADDLNDDVLGRCLDALFEADVSALYQVMAAQVVERLGLKSTAVHLDITSFHVDGAYDCADGDLVGKLQLVRGYSRDHRPELNQVILELICENQAGLPVYMQALSGNSNDTKAFAQTVRRHLNSLKAAQECRYLVGDAALYCADTLQLLAQQQQLFVTRVPVTLNEAKQAVATIGAQPLTALGNGYHGRWQHANYAGVAQRWLLVRSEQASHREQQTLAKNLLKDSTRELKAFAKLCARRFACEADAQAELSCFTASLMLLQLDAEVVGEPVYTGRGRPKRGEEPIGHQFQITGLAATSLACVEEARNQTGVFILATNDHSDTLTMAELLATYKAQQNVERGFRFLKSPEFLTSSLYLKKPERIEALLMVMTCSLMIYAALEHRIRQGLVEQNRSVADMKKKPTQQPTARWIFLRFGGIHEYRLGEAPPQVTELTGDQQIILEVLGERYRQIYS
>NZ_CP022426.1|WP_166507328.1|1504533_1505343_+|DUF4935-domain-containing-protein
MSDDEIEYGAILVDTSIFDGNGLKLEKGLLGKLSQFKKSPIEYILPDVVKNEVQRHLESKISASRAALEKALNEAGDHLFFDGSELNDAKKMLVDSKEVNGLAESRMNKFIDSTGALVLETGSYVSVSDLLSKYFSNEPPFAETGKKKNEFPDAIVLMAVEAWADKNNEYVLAIAKDGDWKNFCQNSTRINYQDDFSRGLEVFNQTNAPYTLLANLETALNSGSATKFLAEINSHLESALDGFTPALFPKSTIKPQLPQPQVTVTLGAF
>NZ_CP022426.1|WP_034524650.1|1505323_1506241_-|IS5-like-element-ISAs13-family-transposase
MSTSLHPITNWPTYNKSLINRGSLTFWVDAEAMNNWFHHGHHGRRGRSQLYTDQTICTFLMLKGIFNLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVAVAYRQPSKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHQLISRKGATACIPPRKNAGLWEKGHPRNEAVLVMRKEGLAHWKKISGYHRRSLAETAMYRFKQLLAGKISLRNYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP022426.1|WP_099368928.1|1506408_1506726_+|hypothetical-protein
MLEHEFRIVDKDEDWVVLEASANIVVEAEGDFSLSVYDSIDRDHVSMGGVTVRVEREFESEILITISGDLNGPVDELSIDEVEIVSPINTIDFGYIEPEYDDYEE
>NZ_CP022426.1|WP_021139093.1|1507117_1507696_+|DUF3305-domain-containing-protein
MGAVTVQDTTNTLPPQRWLQLELRAIDSQVGRWQSRRFEIAALHPAEPEAAGALPLTLFRDERGDYRFNLSSGSPRLFVTGSRVDSGFVADGLTLSQTVAAAYMDGERQVLSCPLPEALQAWVEAFIGRHGELLEARRKGKKGKGRAQDQLGVDTVDQASCGAVKATGPDGRERGSDAGVSAGNKAGNSAHE

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Crispr_ID: NZ_CP022426_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_7

1863492-1863643

Orphan

Consensus_repeat	Method
GTGCGGTGGCGACGAAGTGGCCTTCTTCCCTCTCCCTCCAGTAACGACCGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_7

>merge|NZ_CP022426|7|1863492-1863643|CRISPRCasFinder
GTGCGGTGGCGACGAAGTGGCCTTCTTCCCTCTCCCTCCAGTAACGACCGGAGGTTAAGGATGCGCGAGATAATGACCGTGGATCGCACTACTGAGCGGTGCGGTGGCGACGAAGTGGCCTTCTTCCCTCTCCCTTCAGTAACGACCGGAGG

>NZ_CP022426|7|7|1863492-1863643|CRISPRCasFinder
GTGCGGTGGCGACGAAGTGGCCTTCTTCCCTCTCCCTCCAGTAACGACCGGAGG	TTAAGGATGCGCGAGATAATGACCGTGGATCGCACTACTGAGCG
GTGCGGTGGCGACGAAGTGGCCTTCTTCCCTCTCCCTTCAGTAACGACCGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_021137866.1\|1863650_1864130_+\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NZ_CP022426.1\|WP_021137862.1\|1866986_1867766_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|211851
NZ_CP022426.1\|WP_021137858.1\|1869910_1871137_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP022426.1\|WP_005309884.1\|1860756_1861212_+\|nitrate-reductase-cytochrome-c-type-subunit	unknown	unknown	gnl\|CDD\|367715
NZ_CP022426.1\|WP_021137865.1\|1864218_1864944_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257
NZ_CP022426.1\|WP_021137867.1\|1863205_1863451_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NZ_CP022426.1\|WP_021137863.1\|1865755_1866856_+\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP022426.1\|WP_021137856.1\|1872528_1874184_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP022426.1\|WP_005309891.1\|1862158_1862665_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NZ_CP022426.1\|WP_021137859.1\|1869158_1869914_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP022426.1\|WP_005309879.1\|1859150_1859885_+\|ferredoxin-type-protein-NapG	unknown	unknown	gnl\|CDD\|236534
NZ_CP022426.1\|WP_021137873.1\|1855575_1856085_+\|ferredoxin-type-protein-NapF	unknown	unknown	gnl\|CDD\|319886
NZ_CP022426.1\|WP_099368937.1\|1867877_1869097_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP022426.1\|WP_021137869.1\|1859881_1860757_+\|quinol-dehydrogenase-ferredoxin-subunit-NapH	unknown	unknown	gnl\|CDD\|236535
NZ_CP022426.1\|WP_005309887.1\|1861306_1861897_+\|cytochrome-c3-family-protein	unknown	unknown	gnl\|CDD\|131216
NZ_CP022426.1\|WP_021137872.1\|1856113_1856377_+\|chaperone-NapD	unknown	unknown	gnl\|CDD\|367731
NZ_CP022426.1\|WP_021137870.1\|1856645_1859135_+\|nitrate-reductase-catalytic-subunit-NapA	unknown	unknown	gnl\|CDD\|237416
NZ_CP022426.1\|WP_021137857.1\|1871457_1872114_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP022426.1\|WP_021137864.1\|1865078_1865759_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NZ_CP022426.1\|WP_021137868.1\|1862714_1863209_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_021137866.1\|1863650_1864130_+\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	1.10742e-78
NZ_CP022426.1\|WP_021137862.1\|1866986_1867766_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.65717e-24
NZ_CP022426.1\|WP_021137858.1\|1869910_1871137_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP022426.1\|WP_005309884.1\|1860756_1861212_+\|nitrate-reductase-cytochrome-c-type-subunit	gnl\|CDD\|367715	pfam03892, NapB, Nitrate reductase cytochrome c-type subunit (NapB). The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase.	9.30558e-66
NZ_CP022426.1\|WP_021137865.1\|1864218_1864944_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.70289e-72
NZ_CP022426.1\|WP_021137867.1\|1863205_1863451_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	9.53201e-53
NZ_CP022426.1\|WP_021137863.1\|1865755_1866856_+\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	5.22927e-90
NZ_CP022426.1\|WP_021137856.1\|1872528_1874184_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.05636e-69
NZ_CP022426.1\|WP_005309891.1\|1862158_1862665_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.27034e-89
NZ_CP022426.1\|WP_021137859.1\|1869158_1869914_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	1.55818e-152
NZ_CP022426.1\|WP_005309879.1\|1859150_1859885_+\|ferredoxin-type-protein-NapG	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	1.68773e-152
NZ_CP022426.1\|WP_021137873.1\|1855575_1856085_+\|ferredoxin-type-protein-NapF	gnl\|CDD\|319886	cd10564, NapF_like, NapF, iron-sulfur subunit of periplasmic nitrate reductase. This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.26557e-62
NZ_CP022426.1\|WP_099368937.1\|1867877_1869097_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.79828e-33
NZ_CP022426.1\|WP_021137869.1\|1859881_1860757_+\|quinol-dehydrogenase-ferredoxin-subunit-NapH	gnl\|CDD\|236535	PRK09477, napH, quinol dehydrogenase membrane component; Provisional.	1.20848e-150
NZ_CP022426.1\|WP_005309887.1\|1861306_1861897_+\|cytochrome-c3-family-protein	gnl\|CDD\|131216	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.	3.95873e-122
NZ_CP022426.1\|WP_021137872.1\|1856113_1856377_+\|chaperone-NapD	gnl\|CDD\|367731	pfam03927, NapD, NapD protein. Uncharacterized protein involved in formation of periplasmic nitrate reductase.	9.0444e-28
NZ_CP022426.1\|WP_021137870.1\|1856645_1859135_+\|nitrate-reductase-catalytic-subunit-NapA	gnl\|CDD\|237416	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA.	0
NZ_CP022426.1\|WP_021137857.1\|1871457_1872114_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	3.23418e-104
NZ_CP022426.1\|WP_021137864.1\|1865078_1865759_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	2.00485e-74
NZ_CP022426.1\|WP_021137868.1\|1862714_1863209_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	7.71006e-101

>NZ_CP022426.1|WP_021137867.1|1863205_1863451_+|molybdopterin-synthase-sulfur-carrier-subunit
MIKVLFFAQVRELVACDELSLTCDYVTAEALRSSLSERGDKWALALEAGKLLVAVNQTLVPLDTPINDGDEVAFFPPVTGG
>NZ_CP022426.1|WP_021137868.1|1862714_1863209_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MNLTHLNQSGEAHMVDVTDKQVTEREARAEAFVAMASDTLALILSGQHHKGDVFATARIAGIMAAKKTSDLIPLCHPLALTRVEVEIVPLPEQNRVHIRTLCKLSGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIEQVRLVEKKGGKSGHFQLGSNAGDKA
>NZ_CP022426.1|WP_005309891.1|1862158_1862665_+|molybdenum-cofactor-biosynthesis-protein-B
MGQKNSAFIPLKIAVLTVSDSRTIANDSSGDYLVSAVTEAGHQLADRALLADNLYQVRSRVSQWIADETIQVVLINGGTGFTDQNWVPEAVGVLFDRTVKGFGELFRQLSFAEIEGSAMQSRALAGLANRTLVCCLPGSPGACQLGWEQLIRDQLDARTQPCNFVAHL
>NZ_CP022426.1|WP_005309887.1|1861306_1861897_+|cytochrome-c3-family-protein
MKLPGFIQRLWTTFKSPSKAALWVLLLMGFFGGVIFWGGFNTAMEASNTEKFCVGCHEMKDNVFVEYRDTIHYANRSGVRASCPDCHVPHEWTYKIIRKVQASKELWGMLTGKVDTREKFESHRREMAEREWQRMKDTDSRECRNCHNFEYMDFSLQGKRGAQMHSTSLASGENTCIDCHKGIAHQLPDMTGVKGF
>NZ_CP022426.1|WP_005309884.1|1860756_1861212_+|nitrate-reductase-cytochrome-c-type-subunit
MKKLIGAMLACLMAGSLMAAIPEITNSTGGIKSERGSTDLTTEAEAAPLKNFRKDGDLYDRQYMHQPPLIPHDVRNYEVDTKVNKCLACHSFKNASKMKAPKISPTHFETRDGMTLGEVSPRRYFCLQCHVPQADAKPLVENTFKPVEALN
>NZ_CP022426.1|WP_021137869.1|1859881_1860757_+|quinol-dehydrogenase-ferredoxin-subunit-NapH
MSRYPGAEARVRLGWWRSHRFLLLRRLTQFSVLGLFLLGPLAGVWILKGNLSSSLLLETVPLSDPLTLLQSVAAGHWPISTLWIGAVIVLLGYWLVGGRVFCSWVCPVNLVTDAAAWTRARLGLKGNGQFSRNTRYWLLAMVLVVPAVVGVMVWELVNPVSLAMRGLLFGMGAGWALLAMIFLFDLFVVERGWCGHLCPVGAFYALVNRVGFIKISAKGRERCSNCMDCYAVCPERPILRGPVHGAKRGHGPLIAAQECTNCGRCIDVCAEQVFEITVGFAVKAEKMSENT
>NZ_CP022426.1|WP_005309879.1|1859150_1859885_+|ferredoxin-type-protein-NapG
MSRSRRQFLADMAKGACGVGLLGVGLGGMARQQAAAVPAQALRPPAALDEAEFLSACVRCGLCVDACPYDTLKLARLFEPVTTGTPYFQARAVPCEMCDDIPCVVACPSGALDQGMTDIDQARMGVAVLIDHETCLNYLGLRCDVCYRVCPLIDKAISLELVRNPRTGKHAMFLPTVHSDICTGCGKCEHACVLEESAIKVVPRQLAKGELGHHYRLGWEEKRKAGKSLIGERLTLPTRKPEGL
>NZ_CP022426.1|WP_021137870.1|1856645_1859135_+|nitrate-reductase-catalytic-subunit-NapA
MKLSRRDFMKANAVAAAAAVAGISAPTLAANLITSTDKTAIKWDKAPCRFCGTGCSVLVGSQDGRVVATQGDPDAPVNRGLNCIKGYFLSKIMYGEDRLTQPMLRMTNGKFDKNGDFAPVSWDQAFDIMAEKFKATLKEKGPTAVGMFGSGQWTVWEGYAAAKLMKAGFRTNNLDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGSNMAEMHPILWSRMSDRRLSNPDVQVHVLSTFEHRSFELADNGMVFTPQTDLAILNYVANYIIQNDKVNWEFVNKHTQFRKGTTDIGYGLRPTHPTEARAKNPGNGDSTPMSFDDFAKFVADYDLESVSKLSGVSKEKLEKLAQLYADPSKKVVSYWTMGFNQHTRGVWANNLCYNIHLLTGKISTPGSGPFSLTGQPSACGTAREVGTFAHRLPADMVVTDPKHRAIAEKIWKLPEGTIPEQVGYHAVLQNRMLKDGKLNAYWVMCNNNMQAGPNMNEEALPGYRNPANFIVVSDPYPTVTAQAADLILPTAMWVEKEGAYGNAERRTQFWHQQVKPPEGAKSDLWQLMEFAKRFTVEEVWPAELIAKMPEVKGKTLFDVLYANGQVDQFPKEQSKGEFNDESESFGFYVQKGLFEEYATFGRGHGHDLAPFDQYHEARGLRWPVVDGKETLWRYREGFDPYVKAGEGVRFYGKPDGRAVIFALPYEPAAEAPDKEYDMWLSTGRVLEHWHTGTMTRRVPELYRAFPDAVLFMHPEDAKARGVRRGEEVIVSSRRGEVKTRVETRGRNRPPKGLVFMPFFDASQLVNKLTLDATDPLSKETDYKKCAVKVVKA
>NZ_CP022426.1|WP_021137872.1|1856113_1856377_+|chaperone-NapD
MNQEFHVSSLVVLTQPPFRHQLAQQIATLEGAEVHAVSDEGKLVVTLEGPSQRPIMSAIDAIQAMPGVLSAALIYHQFDDFDVECKE
>NZ_CP022426.1|WP_021137873.1|1855575_1856085_+|ferredoxin-type-protein-NapF
MPDRVNLSRRGLFRGRLTSSEPQVQLPWSVAWPDFVADCTRCGDCLTACPEQILIKGDGGFPAVDFLRGECTFCGDCVTACKAPVFRSMTEAPWQYIAHIEANCLASAQVFCQRCQDSCETRAIRFSPMLGRVPTPSIDTASCTGCGACVMDCPVGSIRVGAPRSEAPT
>NZ_CP022426.1|WP_021137866.1|1863650_1864130_+|molybdopterin-synthase-catalytic-subunit-MoaE
MSQATTTPIDRILVQREDFSLADEYARLATRADSGAIVTFVGKVRDFNQGEEVKGLALEHYPGMTEKALADIVQETRRRWPLQECTLIHRIGELWLGDQIVLVAVSSAHRDAAFDACHFIMDFLKTRAPFWKKELTAEGVQRWVEAKDSDNAAAARWQA
>NZ_CP022426.1|WP_021137865.1|1864218_1864944_+|molybdate-ABC-transporter-substrate-binding-protein
MKPLLSVVIAGVCAATLHTGAVQADEVKVAVAANFKGTMERIGKAFTAKTGHTLAISSAATGVLYTQISHGAPFDLFLSADVATPEKLEKEGKGSDRFTYAIGQLGLWKKGGPAPDEATLRSWKGNLAIANARTAPYGAAAMATLTHLKIDPKQYRLLTGANIGQTWQFVDTGNAELGFVAWANLVEAGKTGEAWAVPASFYPAIEQQGLVLKKGAAVEALVAWLKGPGQVQIKAAGYALP
>NZ_CP022426.1|WP_021137864.1|1865078_1865759_+|molybdate-ABC-transporter-permease-subunit
MSERDLLAIWLTLKLAACTTGILLLLSPPLAWWLSRSQHRLRPLVEALVALPLVLPPTVLGFYLLLAFSPEYGFGAWWRDTFGAPLAFSFLGLLFASILYSLPFVVQPLTSAFVNMGNKELEAAATLGLGPVERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGNIPGETQVLSIALFDHVEAMDYQNAHILAGGLMGFSLVMLVLVYGVLQRRQRRLFG
>NZ_CP022426.1|WP_021137863.1|1865755_1866856_+|molybdenum-ABC-transporter-ATP-binding-protein
MSQPANMSQGNALHRHPLQLEARREFGLFTLDCTLTLELEGILGLFGPSGCGKSTLLRILAGLDRQSEDRLLWRGRECAVQLPEARRIGLVFQDSRLFPHLTVLGNLQLAARKGRGRWQPESLAARLGFADLLAQPAHALSGGQRQRVALGRALLAEPDLLLLDEPFSALDSRSRIHQAHVLKGLQRESGIPMIFVSHAMEEVSLLCDQLVLLEGGRVEAQGRPSEIFARTDLSLASRDDAGVMLDATLAHYDDDEQMATLQLGEQTLRVTMNRMPDESGPLQIKVAGRDVVIATAPIEHSSLSNCLTTRLMAVREVRPGQTLLQLALGEQILLARITSRSATRLALAPEQQIYAYIKAVSLVSEG
>NZ_CP022426.1|WP_021137862.1|1866986_1867766_+|alpha/beta-fold-hydrolase
MRRNQVMKSNGLALRSAGEGPLLLLLHGLGSSSLDWQAQIERFSEHYRVVALDLRGHGQSMQEGPFDVATLAADVVNWLDEQPEPAWVVGLSLGAMVALELALHLPHKVRGLVLVNGFSEFLLETPKEQERYAQRLKWLRWFGMRPLAWWLGRELFPGPDLAQVRHTFRLRFVRSNKKKTYRALLDALPGWSVRARLGSIWQPVAIISTSHDYLPLAKRVEQFAALPNASIHTPNGHHAWPAEDPSGFNHLLQRILSTH
>NZ_CP022426.1|WP_099368937.1|1867877_1869097_+|IS3-family-transposase
MGQGVKRTQRDYSLTFKLALVEQIEKGELTYKQAQARYGIQGRSTVLVWLRKHGRQDWSQGASVRAGRSITMPDPDNQTPEQRIKELEQQLALMSQKAQFFEAVVDVLKNDYGVSIGKKATRQVLSQRQVERLTIVRACLFLGISRQAYYKRNRVADVRHAQGQQVVRFVRQVLLRQPRVGTRKLHYLLQGQDDGGLKVGRDRLFQILAEHRLLVPPRRAYHKTTHSFHRFYRHPNLLKVGPEQVTPVAPEQVWVADITYLPARSGPLYLSLVTDAYSRKIVGHHVHEGMHAESVAMAFKKALKQRRGGGELIHHSDRGVQYCSGLYQSLHARHGVKCSMTDGYDCYQNALAERVNGILKGELLLQSPQDLAQAREMVREAVDIYNEERPHHALKYRTPDAVHRGF
>NZ_CP022426.1|WP_021137859.1|1869158_1869914_-|molybdopterin-synthase-adenylyltransferase-MoeB
MTDILSDAELLRYNRQIVLKSFDFEGQEALKQASVLVIGAGGLGCAASQYLAVAGVGQLTLVDFDKVELSNLQRQVLHTDARIGQLKVASAAEALRALTPWLKVETHAAVADEALLDVLLPRHQLVLDCTDNLAIRNLLNQYARKHGVPLVSGAAIRLEGQLCSFTWQESEPCYACLSALFGEQALTCVEAGVLAPVVGLVGSLQALEAIKLLAGMGRSYSGRLLMIDGLTGTFREMKLPKRPDCPVCSPP
>NZ_CP022426.1|WP_021137858.1|1869910_1871137_-|molybdopterin-molybdotransferase-MoeA
MGFDTSGLLPLSDALQGMLDQLACCCDTEQVPLPHALGRVIAGDIASPLSVPPFDNAAMDGYAVRLADLASGTPLTMAGKAFAGQPYQGEWPAGHCVRIMTGAPIPVGTDAVVMQEETQADGNQITFLVPPTLGQNIRRRGEDIHEGASVLSAGCRLTPRELPLLASLGIATVPVRRPLKVAIFSTGDELKPVGTPLAHGDIYDSNRYGVKAMLARLGCECLDLGIIPDDPAALRGAFLRADSEADALITTGGVSVGEADFTKQLLEELGEIGFWKLAIKPGKPFAFGRLPRAWFFGLPGNPVSAMVTFDQLVQPALAKLAGQQFERPLQLKAVAGETLKKAPGRLDFQRGILSQGPDGLEVRSTGSQDSAVFSSLSHANCYIVLERERGKVAAGETVTVEPFGSLLL
>NZ_CP022426.1|WP_021137857.1|1871457_1872114_+|GTP-cyclohydrolase-I-FolE
MTSLSQEALLVRAALEAEGLETPLVANALNGQQKKEKIEGHMRAIMETLGLDLTDDSLAETPHRIAKMYVNEIFSGLDYTTFPKVTVIENKMKVDEMIMVRDISLTSTCEHHFVTIDGLAHVAYIPRGKVIGLSKINRIVQFFAHRPQVQERLTQQILLALQTLLGTKDVAISIKATHFCVKARGVMDSTSYTTTTSLGGVFKTQPDTRAEFLGGLKG
>NZ_CP022426.1|WP_021137856.1|1872528_1874184_+|methyl-accepting-chemotaxis-protein
MTTSTMTIGKKLTAGFAVLGLMVAFIGGFSLLEFSNMNRAAIGFTDSILPAVNRTSAIGESISDLRRYELGFFLVASDPQKKAEYRSETARRFEQVAQQLVEHDATIWAEDVEERRTFDTVKADWARYAALHQRVKQLQDSDQLAAAQQVFMSEGIPLYLNLTKSVSDLIRINHGYAKASRKVVVAAYDSAKLSVTVSLLVGLVLVVGLSVVLTRQIRDPLIMLARQAQRIANGDLSKGELQEWIQDSRFNRDELGQLGSALNRMQNALANLVSEIAGSVSQLSSAVEEVSAISEQSATGMARQQSEVSQVATAMNEMQSTVNEVARNTTDAMSAAKDASHTSAQGNQVVRSAISSIEDVSVKIEQAGAVVQQLETDSANISMVLDVIRDIAGQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQDSTAEISKMIELLQSRAAEAGSAMQLSRQQMQASVGLARDAGSSIDTINGAVTQITDMNTLIATATEEQNAVTEELNRSIVNIHNAADENAQGAQQTAQACVELSKLATSLHHMTQRFTL

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Crispr_ID: NZ_CP022426_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_8

1969719-1969814

Orphan

Consensus_repeat	Method
TGCAATGGAGCTGCATATGTGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_8

>merge|NZ_CP022426|8|1969719-1969814|CRISPRCasFinder
TGCAATGGAGCTGCATATGTGTGGTTTTAAAGAATATGGAGCCTCTGCTTGGGAGGGGCGAGCCCACTCAATGTGCAATGGAGCTGCATATGTTTG

>NZ_CP022426|8|8|1969719-1969814|CRISPRCasFinder
TGCAATGGAGCTGCATATGTGTG	GTTTTAAAGAATATGGAGCCTCTGCTTGGGAGGGGCGAGCCCACTCAATG
TGCAATGGAGCTGCATATGTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_005310145.1\|1972976_1973762_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NZ_CP022426.1\|WP_080937874.1\|1983708_1986012_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|183049
NZ_CP022426.1\|WP_021138546.1\|1972247_1972889_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225775
NZ_CP022426.1\|WP_080937873.1\|1978760_1983650_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP022426.1\|WP_005310135.1\|1968679_1969453_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP022426.1\|WP_005310127.1\|1965214_1965610_+\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_CP022426.1\|WP_021138547.1\|1973827_1976767_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP022426.1\|WP_021138543.1\|1965662_1966283_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_CP022426.1\|WP_021138540.1\|1962741_1964175_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP022426.1\|WP_005310139.1\|1970551_1971244_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226634
NZ_CP022426.1\|WP_021138548.1\|1976901_1978590_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP022426.1\|WP_021138542.1\|1964867_1965218_+\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP022426.1\|WP_021138551.1\|1986085_1987045_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_005310133.1\|1967859_1968630_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226961
NZ_CP022426.1\|WP_021138538.1\|1961262_1962333_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|279875
NZ_CP022426.1\|WP_034523538.1\|1966425_1967328_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP022426.1\|WP_021138545.1\|1971618_1972143_+\|acyloxyacyl-hydrolase	unknown	unknown	gnl\|CDD\|378181
NZ_CP022426.1\|WP_021138552.1\|1987222_1988671_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NZ_CP022426.1\|WP_021138539.1\|1962358_1962592_-\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|376492
NZ_CP022426.1\|WP_034523537.1\|1964329_1964809_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_005310145.1\|1972976_1973762_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NZ_CP022426.1\|WP_080937874.1\|1983708_1986012_+\|penicillin-binding-protein-1C	gnl\|CDD\|183049	PRK11240, PRK11240, penicillin-binding protein 1C; Provisional.	0
NZ_CP022426.1\|WP_021138546.1\|1972247_1972889_-\|hypothetical-protein	gnl\|CDD\|225775	COG3235, COG3235, Predicted membrane protein [Function unknown].	9.62891e-34
NZ_CP022426.1\|WP_080937873.1\|1978760_1983650_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP022426.1\|WP_005310135.1\|1968679_1969453_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.44832e-127
NZ_CP022426.1\|WP_005310127.1\|1965214_1965610_+\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	4.09151e-37
NZ_CP022426.1\|WP_021138547.1\|1973827_1976767_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.36337e-100
NZ_CP022426.1\|WP_021138543.1\|1965662_1966283_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	1.99594e-46
NZ_CP022426.1\|WP_021138540.1\|1962741_1964175_+\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	1.23706e-144
NZ_CP022426.1\|WP_005310139.1\|1970551_1971244_+\|ABC-transporter-permease	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	2.52099e-99
NZ_CP022426.1\|WP_021138548.1\|1976901_1978590_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	1.28747e-159
NZ_CP022426.1\|WP_021138542.1\|1964867_1965218_+\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	8.94677e-53
NZ_CP022426.1\|WP_005310133.1\|1967859_1968630_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	2.05006e-161
NZ_CP022426.1\|WP_021138538.1\|1961262_1962333_-\|AI-2E-family-transporter	gnl\|CDD\|279875	pfam01594, AI-2E_transport, AI-2E family transporter. This family includes four different proteins from E. coli alone. One of them, YdgG or TqsA, has been shown to mediate transport of the quorum-sensing signal autoinducer 2 (AI-2). It is not clear if TqsA enhances secretion of AI-2 or inhibits AI-2 uptake. By altering the intracellular concentration of AI-2, TqsA affects gene expression in biofilms and biofilm formation. TsqA belongs to the AI-2 exporter (AI-2E) superfamily.	2.10934e-58
NZ_CP022426.1\|WP_034523538.1\|1966425_1967328_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.64335e-77
NZ_CP022426.1\|WP_021138545.1\|1971618_1972143_+\|acyloxyacyl-hydrolase	gnl\|CDD\|378181	pfam09411, PagL, Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.	1.41231e-11
NZ_CP022426.1\|WP_021138552.1\|1987222_1988671_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NZ_CP022426.1\|WP_021138539.1\|1962358_1962592_-\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|376492	pfam01206, TusA, Sulfurtransferase TusA. This family includes the TusA sulfurtransferases.	1.52411e-17
NZ_CP022426.1\|WP_034523537.1\|1964329_1964809_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	7.34611e-27

>NZ_CP022426.1|WP_005310135.1|1968679_1969453_+|ABC-transporter-substrate-binding-protein
MNKLMLATAIVTALSSGSLMAKEWKEVRIGVEGAYPPFSWTEPSGEVKGFDIDIANALCAEMKVKCTLVKQDWDGIIPALLSRKYDAIIATMDITEERKKKVDFTQKYQHIPARFAAKKGTDVQLDKAFMDGKAVAVQRATSMDTYITDNFPNATIKRYGTADEAYLDLKSGRVDYVLADSAAITDGLLKKEGGDGFEFVGPKLTDPKWFGEGAGIAVRKADKDLKEKFNTAILALRANGKYKEINDKYFEFDVYGE
>NZ_CP022426.1|WP_005310133.1|1967859_1968630_+|ABC-transporter-ATP-binding-protein
MSDVAALEVRELHKYFGTHEVLKGIDMTAHKGDVISLIGSSGSGKSTFLRCINLLETPSSGTVSLHGELIRMKTNRAGERLAEDVRQVERIRSRLAMVFQSFNLWSHMTIMQNIIEVPIQVLKIPRAEAIAKAEHLLNRVGLWERRDYYPGHLSGGQQQRAAIARALAVDPEVMLFDEPTSALDPELVGEVLGLMRELAEEGRTMLVVTHEMSFARDVSNKVMFLHQGRVEEEGNPKEIFAHPKSERFKQFISSIY
>NZ_CP022426.1|WP_034523538.1|1966425_1967328_-|lysine-exporter-LysO-family-protein
MLLNVLLILLPLAIGYLIPLSSARLIKLVNQSLGKMVYLILFLMGLGLAYVENLGSNLAVIFKVAGVMLAAITFCNLLALWWLDKRSPPTHEASDAKMPSKLHLLWESLQLCFVVLGGVLLGLLVDLRILPIDKLSEWALMLLLLLIGVQMRNSGMRLRQILLNPWGMKIAFTVIVSSWLGSLLAAQLLGMPFSHGLAISSSFGWYSLSGILVADKLGPVLGSAAFINDLGRELIAILIIPMLMRRHPSAAIGYGGATALDFTLPVIQKSGGIQVVPVAIVSGFILSLLGPILILGFLAI
>NZ_CP022426.1|WP_021138543.1|1965662_1966283_-|DUF479-domain-containing-protein
MNYLAHLHLAAHTRSSLTGNLLGDFIKGPLPSALAPEFDEGIWLHRKIDAFTDAHPEHRAAVACFEAPWRRFGGILVDMLYDHWLSVYWPQFCAEPLPRFLQHSYDQLLADHLLLADGLPAALKRMAEQNWIASYRHKEGLGRALNGIGHRLRRPVLLGDALTTLDEMDWHTCELGFLRFYPQLMAFSEQQLAHYRETGGHAGLRP
>NZ_CP022426.1|WP_005310127.1|1965214_1965610_+|DUF2069-domain-containing-protein
MTTRFARLLTLVGFFGLLGWVILWHLFLSPHPDLNPWLLPVIWTVPLLFPLKGIVQGNPYTHAWGNFVLMPYFLHALTLITTDEGERWLAVVELVFTTLAFVGTIYYARLRGRELGLSIRKKKGELSQEEK
>NZ_CP022426.1|WP_021138542.1|1964867_1965218_+|arsenate-reductase-(glutaredoxin)
MSETQIYHNPRCSKSRETLALLEQHGIAPDVVLYLEQAPSEDVIRTLLTQLGFADPRQLMRTKEDLYKELGLADQSGDALIRAMHQHPKLIERPIVIKDGKARIGRPPEQVLEILK
>NZ_CP022426.1|WP_034523537.1|1964329_1964809_-|TlpA-family-protein-disulfide-reductase
MVRVSGRAKEMKRICWLIVAALLTACSPAPEFSNSQGQPVTLAQFAGKPLLVNYFAPWCAPCLRELPLLETLAQEGKIAVVIISYDPATPAELGALASRHHIRVPLLIADKEAHLPFSPPTGLPTSYLLDGEGRLQATLVGELDEQKIAALKMRAAQFR
>NZ_CP022426.1|WP_021138540.1|1962741_1964175_+|M48-family-metallopeptidase
MASLPLLASLMGATFHAQASNQLPDIGTAGVAALPIEQEVRYGNAFMRFARAGLPIIDDPVLSQYIDDLGQRLLTNADGVRFPFTFFLINDPSINAAAFLGGRVKVHTGLFLYADSESELASVLAHEITHVTQRHIARYMEAQASSSAMTLAGLVGSIALAVINPTAGIAALQTTLGLSMQSAINYTRDNEYEADRIGMKTLYDAGFDPMGMANFFQKLAAEYRYASKPPQMLLTHPLPETRISEARGRANSYGRRNLPPSLDFWLAKVRIQVRYGTETPQALLSYFDSRLQKGDYPLKDAATYGKALALLQLKRTDEADTLMQELATRHPEDLFVVDALTDIDLAKGRSAQAIARLEKFRARMPDNEVVVVNLGNAYLEGGDYKKSIAILDPYARDHEENSLAWNLLSDAYRKAGRMTELHMARAEMLSLRGDYQAAIDELIVARGTTSDKLTLARLEARITELERAKKDLDSLKG
>NZ_CP022426.1|WP_021138539.1|1962358_1962592_-|sulfurtransferase-TusA-family-protein
MEHLDLTPWRCPEPLIRLKLWLRQATPGQSLSIQLADPGSRQDIPAYLQRQGHSFRLRQEPDNTIFLQLVVGAKQPS
>NZ_CP022426.1|WP_021138538.1|1961262_1962333_-|AI-2E-family-transporter
MLEVLKRWYQTRFSDPDAVTLFLLLVFGFAVLWLFGNLLAPILVAIVMAYLLEWPVNRLQRTGLSRALATTLVLLLFIALTVMALLGLIPTLVSQGINLAKESPSMLAHAQDYVRTLPDLYPEIIDVTLVETVIDNIRQRILSGGEHLVSASLSSLVNVVALLIYLILVPLMVFFMLKDKQPLLSGLTRFMPRNRALVKRVWTEMNGQIINYVRGKVIEILIVGVATYIPFALMGLRYSALLAVAVGFSVLIPYIGAAAVTVPVAMVALFQWGFSSDFVWLMVAYLVIQALDGNLLVPLLFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVINAWPKRDDPALPGV
>NZ_CP022426.1|WP_005310139.1|1970551_1971244_+|ABC-transporter-permease
MDFSIILKEWPTYWQGLYTTVLLVAASLILGLALAVPMGILRNSRNWLIKGPIWAYIYFFRGTPLLVQLFIIYYGAAQWEWLKNSAAWTLFAEAWFCALLAFTLNTGAYTAEIVRGAVLNMPKGQIEAANAFGMSRWQTLTRIILPNSFRRALPAYSNEVIFMLQGSAVAGIITIVDLTGAARIINSRYYSPFEAFLTAGLLYMLLTFVIVWLFKKWEARWHAHLRPRSL
>NZ_CP022426.1|WP_021138545.1|1971618_1972143_+|acyloxyacyl-hydrolase
MRANTLLLSGLLASLIASTGATANDNIVALQLGTPSENEKLSIFTADAKYHHMFWRWGDSGCQFGLGVRGGMLKVGDERTARLGTGARAECLWGNWVVWLPAEMIWLADHEFGHRGNGFKDYGGPFQFVTGIGLGYAITKNWLIGYQYEHMSNANMYEQNPGLDTHTLHIEYRF
>NZ_CP022426.1|WP_021138546.1|1972247_1972889_-|hypothetical-protein
MSEGQAVALLLWVLLLIFSLRGTLLRTLLDQPLYQHLCLGGAIVLVPLWTLRAGLHEGLEVHFLGLTSLTLLLGWRLALLAPCLTLLVLGYFDVIKLADIGWQALIGIALPVATSWLLFLASWAWMPRHLFVYLFVVAFFGGALGISVKMIASALLMGMSGAYPWHTISADYLSIWPLLLFPEALLNGMTMTLLAVYRPHWVNTFFDREYLGR
>NZ_CP022426.1|WP_005310145.1|1972976_1973762_-|pyruvate-formate-lyase-1-activating-protein
MSVSNQIPAVETSESGVIGRIHSVETCGTVDGPGIRFIVFMQGCLMRCKYCHNRDTWDTQGGREVTVPELMSDITSYRHFMNASGGGVTASGGEAMLQQNFIAELFAACKEKGVHTCLDTNGFVRHYDEQLDKVLDNTDLVLLDIKQINDEKHIPLTHVSNKYTLEFARYLAAKGKTMWIRYVVVPTWSDDDESAEGLGQFIAELGDSVEKVELLPYHELGKHKWDVLGENYDLTGIKPPSKETMDRVQGILAKYHNNVKY
>NZ_CP022426.1|WP_021138547.1|1973827_1976767_-|EAL-domain-containing-protein
MSSTALSHLPPASQTPLFFRLDVRSQRLVALTDVMQTPLHWLDEPRSAWPAQLPDALRLPIEQALAKGQGGKLMLRFAGQQWHIALSHEQDAFWLICLQTQRQEPIADLALQLPRLSQMASQQQFVAMLEALKESLGADRLILWHYQANGSLGSEQLTPVFALGAEGLSAIRGDSRYIRALRTRKSLSFSEAAHQPMLSQHYYLANAGVSSRLDGALLEQEKLIGVLSLEYLSATVLSEEMLQLVRHSAQLLGHWQPEPEPLINPVLALPGELTLLTGIAYCRALVNWAVTMSGARIGWVGEYQPRGQELWIIPRCVLEGETFSILKPIQLDPGPAQELFQHGQALYVEDLPLRYPHATQLLALNAKAYVGVPLHGPSGAPMGQLTLLLDAPLPDPMPLLDALSSQHERAAIELQRLAADDALRLAEVAFNTHDGLLVMDHQGIILKVNHSFGRITGFGNDEMIGQHIVRLRPTYYGDHLKEDVRRAIDEQEFWMGEERCLHKDGHLFPVRLMVSGVKDELGEFSHYVCSFYDITKEKDAARHIEQLAYYDDLCGLYNRRSLNNIMQCTLQAPNGQWGALLLVDLDNFKSINDSLGHACGDQLLQAVVERLKGLPQDNLVLARISGDEFALLFTALGQGYVTAKILAEHFARELMGLFRTPFDIEDHKLHCSASVGISLFSSEDQDHLVLMQQADTATHMAKRAGQGNYVFFSEAMAEKEKSKLTINNQLRDALRHHELQLHYQPQYRVDNGSLSGIEALLRWQRSDGTMVPPAEFIPIAEETSLIQDIGYWVMKTACAQYSFWLNRGFAIPHLSVNVSARQFHTAGFVQQVEYILRDTGVPPSRLLLEVTESVVLENRLESIARMRQLKDLGILLSIDDFGTGYSSLAYLRDLPADEVKLDRSFIQTLVHSEQDKAIVKAILDLAKVFRFTVTAEGVEDEEQLAILKTLGCQHYQGFLTSRPLTVKALESLLGAAQSG
>NZ_CP022426.1|WP_021138548.1|1976901_1978590_+|FAD-dependent-oxidoreductase
MKRILIVGGVAGGASAAARARRLSEEAEIVVFERGEFVSFANCGLPYHIGGDIQDRDALLLQTPQSFKRRFNVDVRVFHDVIEIDKAGKTLLVRHLQTGEERREPYDQLLLSPGAAPIRPPFPGIDSPHVYTLRNIPDMDRILAALQHDHPRHVTVVGGGFIGLEMMEALHQRKLEVTLLELSDQVMAPVDKEMANMLHVRIREEGIDLRLRTGLAAIESLDVLAEKTAAVASDTRSGLRLTLSDGSHIDTGLLILAIGVKPETLLAAKAGLELGPRGGIKVDAGMRTSDPFIHAVGDAVEETDFVTGESVLIPLAGPANRQGRIAADNMLGRAETYKKTQGTAICKLFDLAVASTGLNEKRLVQLGLPFEKAYVHPGSHASYYPGAHPVSLKLLFAPDGKIYGAQAIGKDGVDKRIDVLAVAQRAGLTVFDLQDLELTYAPPFGSAKDVINMAGFVASNHLKGDTILCHAAEVRARHPHQQVLDVRNGPELDKLGRIPGALHIPLDELRARLNELPRDKELLISCQVGLRGHVACRLLSQHGFKVKNLSGGFKTWQMAVMG
>NZ_CP022426.1|WP_080937873.1|1978760_1983650_+|alpha-2-macroglobulin-family-protein
MRPFDPRPAAHQYAHAFVSPLRRRWSALLLTGLTGLLLAGCGPDKPAATADQAPAAWQVAGAPDTVVQANARQYRDAPALALVFSGPLAPKSNWQTWLSVSEGGKQLQGEWVLAEDGRTLYFPQVAPDKRYKVTLKAGLGPEAQSWTLKTRPLEAGASFAASGMVLPLRQELRLPISAVNVDEVNIDFFRVDAEYLPRFLAEYRPGAGMGNWELEQITSRAKRVFSGRYALELDPNRRETRLINVKEPQLAEAGVYFAVMSPLGNYDWRKETTYFAVSDMGLSARRYRDQLEVFVSALSSADPLKEVQLSLLDEKGNRLQVQQTDLRGHRRFDQVQGARLLLAEQGKHLAVLRLDGAALDLSAFELGTQPWQAQQLYLFSGRDLYRPGERLDSEILLKGQDGQLLPGMAVELDVKQPDGQLLEQKRLLPDSLGAAHYGLRLPDDAPLGRWTITLKTAAGSRFEWPFLVEEFLPERLKLQLGKGPDGELLNPQEALTLPLQGDYLYGAPASATKAKAEVKISRATMPFTQWQEFTLGDVLLTEQARDREPVTLTLDQQGHGAFSLVDQLASVGTLGPLEVAYRVSLSEPGGRAVNRSRTQYGWPTGSQWPALKADFVADRVEGGKTLPFQILNLDEQGQPVAGEVKVRLVNEFRDYYWHYADGEGWKYEFNSQPYLEQEQTLQLDGKGPTTLSLPLAAGWYRLEVENSQGHQSSLRVEIGSYAWGGGGEQARPDKIAITLDKRAYQAGDKAKVTLVAPRAGKGLLLVEDGDGLRWWQRIELRAEGGGLAEARGEFEIPVSPEWQRHDLHISAQIAAPDSESKPVSQKSVQSLRSVGLVPLALDREARRLPLTLSAPDKVVPLTRLEVAVTSTPNSQGRVVLAAVDRGVLNISDYQPLDPFEIFFGRKRFAQDLFDNYGQVIPPQDGKLARLNYGGDAPALKKGGALESRVEVAALWSGEVSFDESGKAVIPLDLPNFNGELALMALAWNEQQVGQAERAVKVVAPLVAEIGWPRFGARGDETRALVQLRNMSGEDQSLSLTWILTGGLQAGGELPGTLALKNGEEQWLTLPLTVTGASGVARLQLAASGKDFAVNREWSLPLRSPWPAQTRQRYQMLAPNQQMSFAQSELAGLDPANLQGLLSLSGTPPWDPAGQWQALAQYPYACLEQTLSRAWPYLLTTADERAAWSNNLPNVDKPVSEADLQRALLQRLQRLQLPSGGFGLWDGRSDEEQWLTAYAADYLLTRKEAGDAVPEAMLSQAINRLQSYLTDSQYGERWSSAPEHSRLAYQAYSAFVLARVGKAPLSTLRLIWEQQADHARSGLPLLHLSLALSAMGDEQTAAKALTRALATQRGDDYLADYGSPLRDGALELALLRQHKLAEDRWPEFSAKVADTLAHRQWLSTQERLALLRLAQVDPAADWQARVASISGDQAIAGKNSAQIGAPEALAATGVTNEGKGSLYVQRTLVGYPEQAPKRISQGMSVTRSWFNADGQHFDPAKVKVGDLVVVRLNVSSEQTVPDALLVEMLPAGFELENPALGTSIKLEELSIEGKPAWQSEWNDYLKHQEFRDDRYTAALDLSEGGNQQLVYLMRAVTPGRYQVPPTQVEDMYRPELRAVGQDIHEVTISE
>NZ_CP022426.1|WP_080937874.1|1983708_1986012_+|penicillin-binding-protein-1C
MHQGRLALPGLPRWLRLTGLGMGALILVLLVLDRVFPPPPLDPAYARVVLDMKGRPLRAFADTSGVWRYPVTLAQVSPRYIEALLGYEDRHFWRHPGVNPVAMVRGVWQWLRYGRAVSGGSTLTMQVARLIEPYHRSVPGKLRQMARALQLEWHYDKRTLLTVYLNRAPFGGNLEGVQAASFAYLGKSAAKLTHAEAALLAVLPQAPSRYRPDRHPDRARAARDKVMQRLVKQGAWPDAVWREGRIEPVLARGHFTPMEAPLFARLAADSQPGALVHTTIDGDLQRWLEARVATYIRRFPEQTSAALLLVDNQTMAVRAYVGSAEYGNLRRHGYLDMVQAIRSPGSTLKPFIYGLALDAGLVHSASLLSDAPRLGSDYRPANFTGAFQGPVTLTRALQQSLNVPAVQVLEALGPDTLVNRLDNAGVRLALSDKPNPAIALGAAGVRLEQLVALYSSLTRQGQVAMPVWLAGQKAVSRPLLSPGAAWITWQILSSQGRADQPFASEATGRVNRLAWKTGTSYGYRDSWALGVSGRWTLGVWLGRPDGTPLPGFYGQSAAVPLLLSVYSRLGDNSPLPAQPNAVSEAEICWPLGRRVSATLPEACLQHQSAWLLDERDPPTLPDPMDWPSPLRQVALTSQGKPTLTRCDDASQSVWRALWPLSLEPWRAPGERRKALLASGCEGEAQGADLQAPIRIVALGEGNLIRSQRYRLQPRVLGGVGKPFWFLNGQRLRWDGDQVLSKAGRYQLVVVDEAGNSDRVEFRLENPS
>NZ_CP022426.1|WP_021138551.1|1986085_1987045_-|hypothetical-protein
MKTYIYYPGMEVRDELWLKFALLYLERLAFVFTISEKSGLTTLLSTLEQRTDLLAERPEPAFFADITPQLESQLGGLVAPDFVRHKVFGNRDLITRWRQSANHDCFCPTQAGLERLHGFCLAHGFASQDEGGIKMARRFANLLSMRLAREWALANEGALITDHDYLDRLLHLLESRYHNRGGQDCFHLEIPLQVPTHLSEISFEELIALRARSGFRQQLAEFHQALDAMLTMLGSGYAEPAALTRFELAQQGLNQLLGPATHSLPLTTLISCSLPAMAMIHQLKASHPASNLIFHPIKKSHFHQRKSQHFFTRLGQVKS
>NZ_CP022426.1|WP_021138552.1|1987222_1988671_+|tRNA-4-thiouridine(8)-synthase-ThiI
MKFIIKLFPEITIKSKSVRQRFTKMLQGNIRNVLRRFDEDARVRMDWDKLVVSSRNDQFHAQYLETLACIPGIQYFLEVKLSNFTDLHDIFEQTRAVWGDRLKGKTFCVRARRVGKHDFSSLELERYVGGGLNQHCETAGVRLKKPDIQVNLEVENDELYIISAVHHGMGGFPMATQEDVLSLLSGGFDSGVASYQFIKRGCRVHYCFFNLGGAAHEIGVKQVAYYLWSKFGASHKVRFTAIDFEPVVAEILEKVDNGQMGVVLKRMMMRAAGQVADYFQIPALVTGECVGQVSSQTLTNLNVIDRVTDKVILRPLITWDKPDIISEARRIGTLEFAETMPEYCGVISKKPTVKAELSRIEAEEANFDFAILDKVVTEARYLDIRRIGEETAAEVQEIETTEVLAADEVILDIRSADERDEKPLVVEGRDVLHIPFFKLATAFGDLPKEQTYLLYCDRGVMSKLQALYLKEKGFDNVKVYRP

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Crispr_ID: NZ_CP022426_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_9

2843101-2843204

Orphan

Consensus_repeat	Method
GCCGATGATCTCGGTGACTTCGAGCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_9

>merge|NZ_CP022426|9|2843101-2843204|CRISPRCasFinder
GCCGATGATCTCGGTGACTTCGAGCTGTGAGTGAGCACCCAATATGCTGGTCAGTCGGATCGACAGCGAAGTGCACGCCGATGATCTCGGTGACTTCGAGCTGT

>NZ_CP022426|9|9|2843101-2843204|CRISPRCasFinder
GCCGATGATCTCGGTGACTTCGAGCTGT	GAGTGAGCACCCAATATGCTGGTCAGTCGGATCGACAGCGAAGTGCAC
GCCGATGATCTCGGTGACTTCGAGCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_021138702.1\|2828750_2830679_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP022426.1\|WP_021140535.1\|2838406_2839093_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|237310
NZ_CP022426.1\|WP_021140545.1\|2850903_2852097_+\|tyrosine-specific-transporter	unknown	unknown	gnl\|CDD\|185086
NZ_CP022426.1\|WP_021140534.1\|2837690_2838407_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP022426.1\|WP_021140533.1\|2834684_2837489_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP022426.1\|WP_021140536.1\|2839648_2841916_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP022426.1\|WP_021138700.1\|2831678_2832734_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP022426.1\|WP_021138699.1\|2832808_2832979_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021140544.1\|2849584_2850571_+\|catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
NZ_CP022426.1\|WP_021140543.1\|2848176_2849277_-\|fused-PTS-fructose-transporter-subunit-IIA/HPr-protein	unknown	unknown	gnl\|CDD\|236849
NZ_CP022426.1\|WP_021140540.1\|2843806_2844958_-\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|236866
NZ_CP022426.1\|WP_021140539.1\|2843282_2843603_+\|2Fe-2S-ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182668
NZ_CP022426.1\|WP_021140541.1\|2845460_2847185_-\|PTS-fructose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|236740
NZ_CP022426.1\|WP_011898682.1\|2828198_2828747_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP022426.1\|WP_021140546.1\|2852769_2853459_+\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_CP022426.1\|WP_005315494.1\|2845108_2845360_+\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|225850
NZ_CP022426.1\|WP_080937878.1\|2830914_2831577_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP022426.1\|WP_099368981.1\|2833302_2834631_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|379017
NZ_CP022426.1\|WP_021140542.1\|2847181_2848177_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274464
NZ_CP022426.1\|WP_005315478.1\|2852365_2852770_+\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|378249

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_021138702.1\|2828750_2830679_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP022426.1\|WP_021140535.1\|2838406_2839093_+\|HAD-IA-family-hydrolase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.62444e-64
NZ_CP022426.1\|WP_021140545.1\|2850903_2852097_+\|tyrosine-specific-transporter	gnl\|CDD\|185086	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional.	5.90036e-135
NZ_CP022426.1\|WP_021140534.1\|2837690_2838407_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	9.28991e-162
NZ_CP022426.1\|WP_021140533.1\|2834684_2837489_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP022426.1\|WP_021140536.1\|2839648_2841916_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP022426.1\|WP_021138700.1\|2831678_2832734_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	4.64642e-23
NZ_CP022426.1\|WP_005315494.1\|2845108_2845360_+\|DUF1289-domain-containing-protein	gnl\|CDD\|225850	COG3313, COG3313, Predicted Fe-S protein [General function prediction only].	1.96215e-19
NZ_CP022426.1\|WP_021140544.1\|2849584_2850571_+\|catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
NZ_CP022426.1\|WP_021140543.1\|2848176_2849277_-\|fused-PTS-fructose-transporter-subunit-IIA/HPr-protein	gnl\|CDD\|236849	PRK11109, PRK11109, fused PTS fructose transporter subunit IIA/HPr protein.	0
NZ_CP022426.1\|WP_021140540.1\|2843806_2844958_-\|murein-transglycosylase-A	gnl\|CDD\|236866	PRK11162, mltA, murein transglycosylase A; Provisional.	0
NZ_CP022426.1\|WP_021140539.1\|2843282_2843603_+\|2Fe-2S-ferredoxin-like-protein	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	3.22001e-24
NZ_CP022426.1\|WP_021140541.1\|2845460_2847185_-\|PTS-fructose-transporter-subunit-IIBC	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	0
NZ_CP022426.1\|WP_011898682.1\|2828198_2828747_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.74452e-95
NZ_CP022426.1\|WP_021140546.1\|2852769_2853459_+\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	3.42696e-24
NZ_CP022426.1\|WP_080937878.1\|2830914_2831577_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.15915e-33
NZ_CP022426.1\|WP_099368981.1\|2833302_2834631_+\|IS4-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	3.28553e-26
NZ_CP022426.1\|WP_021140542.1\|2847181_2848177_-\|1-phosphofructokinase	gnl\|CDD\|274464	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.	1.30442e-125
NZ_CP022426.1\|WP_005315478.1\|2852365_2852770_+\|DUF2384-domain-containing-protein	gnl\|CDD\|378249	pfam09722, DUF2384, Protein of unknown function (DUF2384). Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. The function is unknown.	3.22357e-05

>NZ_CP022426.1|WP_021140536.1|2839648_2841916_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNLFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIKATADLISEQSPDYQYMAARLAIFHLRKKAYGQFEPPHLYQHVARLVDMGKYDKHLLTDYTQAEFEELNEHLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFLYILVAACLFSKYPKDTRLSYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDSLDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCSQGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDAPGLYDAFFADQDKFEQLYVKYEQDPAIRKKTIKAVDLFSLMMQERAGTGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNLGAIEKLEDLEEMADLAVRALDALLDYQDYPLKAAQKGSMNRRTLGIGVINYAYYLAKNGARYSDGSGLALTHRTFEAIQFYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYKKDLDNLCNEPLHLDWETLREEIKTVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVKASKDGILKQVVPEYHRLKDQYELLWKQPSVDGYLQLVGIMQKFVDQAISTNTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTLYYHNTRDGADDAQADMQDDGCAGGACKI
>NZ_CP022426.1|WP_021140535.1|2838406_2839093_+|HAD-IA-family-hydrolase
MIDNKPVPLRCVLFDLDGTLLDTAPDLGAAVNHVLVSEGFAPLSDAIIRQTTSHGALGLLKAGLGDELLEELGATRLRTALLDYYAANLCVGTRPYEGMVNLIEWLDEKKLPWGIVTNKPGFLTEPLLAALPELASCGVTVSADTLPVRKPDPAPMYFACEQLGVDAAHCLYVGDHVRDIEAGRNAGMRTAVAGWGYLSDDEDPADWGADLHFDTVQALHHWLRYELS
>NZ_CP022426.1|WP_021140534.1|2837690_2838407_+|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MNSDANVDLTEIAKFEAIASRWWDMEGEFKPLHQINPVRLDWITDKSGGLFGKRILDIGCGGGILSESMARRGAHVTGIDMGKEPLGVARLHALEQGVELQYQQMTAEEHAGQAPGQYDVVTCMEMLEHVPDPASVLRAIATLVRPGGRVFVSTINRNPKAYLMMIIGAEYLMKMVPKGTHDHKKFITPAELCRMGEAASLLVRDMSGVHYAPLSNQFKLGKNVDVNYMVEFIRPEHG
>NZ_CP022426.1|WP_021140533.1|2834684_2837489_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRRTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLEKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLIAELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLITPEDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYADDKYVFFATADGTVKKTSLSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAADADVSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKVVSLIVPRGEGAILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESDEEENDVMAIDGEVSEGTDTTPDAGSAAAGSSEGSTEEGAASDE
>NZ_CP022426.1|WP_099368981.1|2833302_2834631_+|IS4-family-transposase
MRIEQALDFLHASNAAQFESLSDLIPPALITTLLAEEDVVTLRRRRMPMERLVWAIIGMAIFRHVPMTQLVNQLDILLPGDRPFVAPSAFLQARQKLGHKSIERLFHETAAGWHQQANHPGWAGLQLLAVDGVMWRTPDTPDNAASFAKPGTQHGETAYPQVRMLCQMELTSHLLVQAVMESCAVNEMVLAEQLIARTPDHSLTLFDKGFYSLGLLHAWQTAGSERHWLLPLKKGTQYEVVRKLGRQDALVLLKTSPQARKKWPHLADTVEARLLTRHINGKERQVLTSMVDPMRFPGAEIVELYSHRWEIELGYREMKHSLQQHRLTLRSKKAMGIRQELWGVLLAYNLLRSQMVKMAASLKGYTASQLSFHMASVYLIHELSCMPYMSPGTIPKRVAELEQQAGQFVLPARRERSYPRCVKPRPQKYSVKKANKNNASQA
>NZ_CP022426.1|WP_021138699.1|2832808_2832979_-|hypothetical-protein
MTSWVMWEIWWSRGWGEHQQGSLTEEHEDEVAHEPARLPAELTAQGKGTYAPRPRG
>NZ_CP022426.1|WP_021138700.1|2831678_2832734_+|PA0069-family-radical-SAM-protein
MAGRGSFHNVDHRFSGQRVDAVDDGWAQPEWEAAFAASDPRTEVKEITARSIISYNRSPDVPFGRSINPYQGCEHGCIYCYARPSHAYLELSPGLDFETRLFAKLNAAELLRREFAKPGYQPDTIVLGANTDPYQPIEHHYRLTRQLLEVMLAHRHPVGIITKSAMILRDLDLLAELAREGLCQVMVSVTTLNETLRRQLEPRASTGTGRLKVIEKLAQAGVPVGVLAAPMIPRLNEPELEHIIKAAAEAGAQSADYILLRLPHELATLFSDWLEEHYPGQKEAILNQLRASRDGGLNSSAFGARMRGEGQFADLLAQRFRLINKRLGLGKRHLQLRRDGFIRPGEQLRLF
>NZ_CP022426.1|WP_080937878.1|2830914_2831577_-|sel1-repeat-family-protein
MDLLLDPPDTFRLHRQNANWITEIIMKPIVSRWLFIGVLGLVIWRLIPLSTEQELASANRAWRSGQFETATKIWQPLAEQGIPRAQALMGWSHEVGQGTAQDMEQAISLYRQSAQAGDAFGQYRLAEVYLRGAGVKRDLREAFHWMELAARNGDVPAMLKVGVLHLMGVSGRVDLPQARQWLYQASQKGNKLALKVLEELALAEEGSSTFDFNWQPLLGE
>NZ_CP022426.1|WP_021138702.1|2828750_2830679_-|threonine--tRNA-ligase
MPIITLPDGSQRQFAHSVSVMDVAADIGPGLAKACIAGRVNGELVDACELIEADASLAIITAKDEEGLDILRHSCAHLLGHAIKQLWPQTKMAIGPVIDNGFYYDIDLDRTLTDDDLAALEERMLALAAKDYDVIKKKVSWQEARDVFEARGETYKVEILDQNIARDDQPGLYHHEEYVDMCRGPHVPNMRHCHHFKLQKMSGAYWRGDSNNKMLQRIYGTAWADKKQLKGYLQRLEEASKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELETFIRGKLKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFTTQSENREYAIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIMEEVSACIRMVYDVYGTFGFENIVVKLSTRPEQRIGSDEAWDRAEAALAEALVLNGLKYDLQPGEGAFYGPKIEFTLHDCLDRAWQCGTVQLDFALPGRLGATYVGEDNERHVPVMIHRAILGSLERFIGILTEEYAGLFPTWLAPTQAVVMNITDNQADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKIAVRTRKGADLGTYPVEELVALLTQEVQTRGQKKVEE
>NZ_CP022426.1|WP_011898682.1|2828198_2828747_-|translation-initiation-factor-IF-3
MKGGKKLGKQPQARAHRINTEIRLKEVRLTGIDGEPLGVVEIHDALNLALEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKTTKEQKKKQKVVQVKEIKFRPGTDEGDYQVKLRNLVRFLEDGDKAKVTLRFRGREMAHQDLGIKVLERVKNDLEELAVVESFPKVEGRQAVMVLAPKKKS
>NZ_CP022426.1|WP_021140539.1|2843282_2843603_+|2Fe-2S-ferredoxin-like-protein
MSDATNTLAPALQPATQQEALQAPLVHTCDGTLLAHPGESVLETLERHGHQLEFQCRSGYCGACRTPLLAGSVHYPNVPLAFVSPGECLPCCCKPIGAIRLDLTKG
>NZ_CP022426.1|WP_021140540.1|2843806_2844958_-|murein-transglycosylase-A
MNKHAYWLTAAVLGLAGCAGTPEQVQVPKKKPDAGCFLNCEVPENLGKQYLDGALPGDLVRVERINSRQRSDFSKFGPQSRLVLERSGKMTRRYGELYHQLSRWVANGGNPAHITQYGISLAQLGGADRMGNVLFTGYYSPVLEVRHRPDAKYKYPIYAMPKCGGRCPSRADIHRGALANRGLELGYSKSLIDNFLMDVQGSGFVHYGDDDRLQYLGYSGKNGHGYVSIGRVLIDRGEVPKEKMSMKAIKDWANAQPEESVKELVEQNPSYVFFERRPTNDVIGAAGIPLLPLAAVAADKSLLPMGTPILAEVPLLDKAGNWTGKHQLRLLIALDVGGAVKKGHLDLYHGMGEKAGVAAGHYKHFGRVWKLGLHHGPTAAPWL
>NZ_CP022426.1|WP_005315494.1|2845108_2845360_+|DUF1289-domain-containing-protein
MEQLEIFPLQSPCIGVCEVNNKGYCKGCLRNREERFNWLTMTQTQQQEVMRLCRGRKARVEAARRKAQEAEQANQPAQSGWDF
>NZ_CP022426.1|WP_021140541.1|2845460_2847185_-|PTS-fructose-transporter-subunit-IIBC
MKAILVTACPAGIATSFLVAKRIEQQAKLAGWELTLDVGSSVQPRQIPSKEQIAAADLILVVASAPVDLAAYDGKRLYQGSMDLALQDPVAVLDAAASGASVYHHQAAPVAAAQPASAKRIVAVTACPTGVAHTFMSAEALETMAKQLGYQIRVETQGSVGAQNALTADEIAAADLVFLATDIEVDMTRFDGKQVYRTSTGAALKKTRAELDKAWLEAKVYRHSGATQPKKEEKAGPYKHLLTGVSFMLPMVVAGGLIIAISFIFGIEAFKVEGSLAAALMTIGGASAFALMIPVLAGYIAYSIADRPGLAPGMIGGMLASSLGAGFLGGIVAGFLAGYSAKYLSDKVRLPVTLEALKPILIIPLFASLFTGLVMIYVVGGPVAGIMSAMTEFLNNMGSANAVLLGVIIGAMMCFDMGGPVNKAAYAFGVGLLASKTYAPMAAVMAAGMVPALGMGIATFLARAKFIKTEQEAGKASFVLGLCFISEGAIPFAAKDPMRVIPACMAGGALTGALSMLFGCELVAPHGGLFVLFIPNAISHVFMYILAIAAGSLVTGVGYAMLKRGEEQAKLATT
>NZ_CP022426.1|WP_021140542.1|2847181_2848177_-|1-phosphofructokinase
MDIVTITLNPALDLTTRLEAMAFGEVNLVSEANLRAAGKGINVAMVLKDLGRDVGLTGWLGADNQQSFVSLFAERALGDHFVRVAGNTRINVKISEQSGRVTDLNLPGLIIDEREVKVLEAAIDELAPQADWFVLAGSLPKGVAPDYCARLITLLKAKGKQVIFDCSGVALKEGIKAAPTLIKPNLEELSQWAGRPIKTLNEQAECARELQAQGIAHVVISNGADGLVWFGPDATWQAIPPRMQVVSTVGAGDSLVAGLAHGLSLGWAPEQTLRLATAVSALAVSQVAVGFNDMNVLTPLLEQVRVQRLDDLAPAQLNTHSPSMENSGDAQ
>NZ_CP022426.1|WP_021140543.1|2848176_2849277_-|fused-PTS-fructose-transporter-subunit-IIA/HPr-protein
MLKLAQQQILLGQSVATKADAIALLASKLTEAGLVEAGYVDGMLAREAQHATYLGSGIAIPHGTTDTRHLVKSTGVMVAQFPKGIEWDEGQIAYVAIGIAAKSDEHLGILRQLTHVLGDEQAAAALKNATDADTIINILTGASAAKEVQFLTLAGFPADDRDQLLLGAAARAKSAGWGEAAMVSSLLASDPAYLGEGVWLARTQAAQTGWVVATPSAQLQAGELPVSALLLLCAADASHLPQLDNLAKLAAAGQLATLAGAEGLAMLQAGPASGLSDTFTIINPHGLHARPGAMLVKVAKEFESDIRVANLDGSGEAVSAKSLMKVIGLGVKCGHRLAFRAEGADAEAALKGIGAAIAAGLGEGAH
>NZ_CP022426.1|WP_021140544.1|2849584_2850571_+|catabolite-repressor/activator
MMKLDEIAALAGVSRTTASYVINGKADQYRISQATRDKVMAVVTAHNYQPDSRAASLRGGQTKTLGFILPDLENASYAKLAKRLEQGARAQGYQLLIVCSEDEPATEKELAEMLASRHVDALLVASCLPPDDPFYPRQQARGIHVLAIDRAMAADKFVTVASENQKASFDLTASLLTPALKHIALITALPELTISQERKAGFEQAVASHTTTRHLCEGVHFSRVEGYRLIKELHHQLGQLPEALVATSYILMEGVLDYLLEQETDMSQLAMATFGDDRLLDFLPFGINSLPQQHDALASQALDLALKAINGEYQCGLHYVSRTLKRRR
>NZ_CP022426.1|WP_021140545.1|2850903_2852097_+|tyrosine-specific-transporter
MNTKTLGCTLLIAGTTIGAGMLALPLASSSLGGPATLLLMIGLWALMAFTAMLQVEASLNTGKWYLHQLADHLLGPWGKGIASFCILMLFYSLASAYISGGSSLLAQALADAGMTISQEQAAWAFTLLFGGMVCVGTRSVDYLNRLMFAVKLVIMVAVLGLLLPRAEGQHLLSLPLGQGLLLAGLPVIFTSFGFHGSIPSVMLYLGDCPKQLRRVFVWGSALPLILYVLWQVAILGLLGQQTLIQSGGALDSLLASVGNLVSWPAFNQAMHLFADLALATSFLGVTLGLFDFMAKVTRRKDNWQGRSQTGLITFVPPLLFALYFPQGFIMALGYAAIALAVLAVLLPVTLVWQSRKQAEAHHYRAPGGVLALGLAGAMGVLIVGVQVSVSLGLLPAL
>NZ_CP022426.1|WP_005315478.1|2852365_2852770_+|DUF2384-domain-containing-protein
MAATAQKAMKEGAIDPSKALPVVFRILDKWQCNTDEQLTLLGISSRSTLNKYKESNGGIRLSVDMQERMSYLLNIHKSLRVLFSADDSIYGWVRKPNSHPFFAGRSAMEIMKGGRVADLYEVATRLHAWRGGMA
>NZ_CP022426.1|WP_021140546.1|2852769_2853459_+|RES-family-NAD+-phosphorylase
MQEPPLIPFKGERAYRIIPSRYPTICVYEDVANADELEAVWAMEALTNDRLREEAGDLSRVPRADWLVGLHGGSYVMAAFTHVNPEGARFTTGDFGGYYCAPLLDTAVKETVYHQERIFGYTGEPAQKVQMRVLCAEFSANLVDITGDAFLSTPLYHATSYSQSQVFALEQKTRGVDGIHYRSVRHSGHNCHVLYRPCLITRIHQAQHLEYHWNGSAIANVLEIKLYGE

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Crispr_ID: NZ_CP022426_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_10

3391635-3391760

Orphan

Consensus_repeat	Method
TGTAGGGTCGATTAGCGGAGCGTAATCGTCCGCGGCAACAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_10

>merge|NZ_CP022426|10|3391635-3391760|CRISPRCasFinder
TGTAGGGTCGATTAGCGGAGCGTAATCGTCCGCGGCAACAATTCCCTCTCCCCTTGCGGGAGAAAGGCAGGGTGCCAATAAGCGTGTAGGGTCGATTAGCGAAGCGTAATCGTCCGCGGCAACAAT

>NZ_CP022426|10|10|3391635-3391760|CRISPRCasFinder
TGTAGGGTCGATTAGCGGAGCGTAATCGTCCGCGGCAACAAT	TCCCTCTCCCCTTGCGGGAGAAAGGCAGGGTGCCAATAAGCG
TGTAGGGTCGATTAGCGAAGCGTAATCGTCCGCGGCAACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_005314583.1\|3383413_3383641_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP022426.1\|WP_021140135.1\|3385144_3386083_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|378311
NZ_CP022426.1\|WP_021140133.1\|3387123_3387627_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP022426.1\|WP_005314534.1\|3400979_3401156_+\|DUF3606-domain-containing-protein	unknown	unknown	gnl\|CDD\|371985
NZ_CP022426.1\|WP_011191342.1\|3392535_3393804_+\|IS4-like-element-ISApu1-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP022426.1\|WP_021140134.1\|3386119_3387127_+\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
NZ_CP022426.1\|WP_021141041.1\|3399750_3400515_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP022426.1\|WP_021141043.1\|3396988_3398365_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP022426.1\|WP_005314539.1\|3398556_3399054_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP022426.1\|WP_076612160.1\|3395174_3396215_-\|IS481-like-element-ISAs19-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP022426.1\|WP_021140130.1\|3389500_3390514_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP022426.1\|WP_021140129.1\|3391207_3391516_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_034524070.1\|3387700_3388447_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP022426.1\|WP_021141042.1\|3399043_3399754_+\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
NZ_CP022426.1\|WP_005314579.1\|3384334_3384892_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP022426.1\|WP_005314581.1\|3383760_3384090_+\|translation-initiation-factor	unknown	unknown	gnl\|CDD\|181613
NZ_CP022426.1\|WP_099369012.1\|3394085_3395102_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP022426.1\|WP_034524069.1\|3388562_3389309_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP022426.1\|WP_017413027.1\|3400595_3400844_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP022426.1\|WP_034524459.1\|3401294_3402068_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180440

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_005314583.1\|3383413_3383641_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	2.19469e-16
NZ_CP022426.1\|WP_021140135.1\|3385144_3386083_+\|DUF2157-domain-containing-protein	gnl\|CDD\|378311	pfam09925, DUF2157, Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.00803e-25
NZ_CP022426.1\|WP_021140133.1\|3387123_3387627_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	3.10541e-37
NZ_CP022426.1\|WP_005314534.1\|3400979_3401156_+\|DUF3606-domain-containing-protein	gnl\|CDD\|371985	pfam12244, DUF3606, Protein of unknown function (DUF3606). This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.	3.56969e-16
NZ_CP022426.1\|WP_011191342.1\|3392535_3393804_+\|IS4-like-element-ISApu1-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.90504e-14
NZ_CP022426.1\|WP_076612160.1\|3395174_3396215_-\|IS481-like-element-ISAs19-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.22782e-19
NZ_CP022426.1\|WP_021141041.1\|3399750_3400515_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.13603e-144
NZ_CP022426.1\|WP_021141043.1\|3396988_3398365_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP022426.1\|WP_005314539.1\|3398556_3399054_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.2658e-90
NZ_CP022426.1\|WP_021140130.1\|3389500_3390514_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.60775e-48
NZ_CP022426.1\|WP_021140134.1\|3386119_3387127_+\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	5.36777e-34
NZ_CP022426.1\|WP_034524070.1\|3387700_3388447_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.43536e-29
NZ_CP022426.1\|WP_021141042.1\|3399043_3399754_+\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	2.12079e-33
NZ_CP022426.1\|WP_005314579.1\|3384334_3384892_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	2.56269e-51
NZ_CP022426.1\|WP_005314581.1\|3383760_3384090_+\|translation-initiation-factor	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	8.11883e-37
NZ_CP022426.1\|WP_099369012.1\|3394085_3395102_-\|IS5-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	1.35925e-53
NZ_CP022426.1\|WP_034524069.1\|3388562_3389309_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.37226e-26
NZ_CP022426.1\|WP_017413027.1\|3400595_3400844_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	8.30873e-23
NZ_CP022426.1\|WP_034524459.1\|3401294_3402068_-\|glucose-1-dehydrogenase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.74217e-83

>NZ_CP022426.1|WP_021140129.1|3391207_3391516_-|hypothetical-protein
MANRFVSSKNRIVQAGRWLATRGAALFAELSEFQQRIWVVSIVNDTYTDTFIVNEGSFKEPMQWMRRKQYDADMLRRVEAMQRSQVIQFELGDTRHRLMRVK
>NZ_CP022426.1|WP_021140130.1|3389500_3390514_-|GGDEF-domain-containing-protein
MDTILQALSVQVTEARDLESLTRPLLEMLETVTGLESTYLTQIDLEQSAQHILYARNSAALQIPEGVSVDWSDTLCRRALDEGRLYAADVADRWGDSAAARAMGIRTYMSSPVRTSSGSLYGTLCGASAEHKPLVTGSEHLIAFFARLIAEHVEREQLLQQLQQANNELSRQALSDPLTGLPNRRALMLELHRLFSLLKRTGHPLLISFIDLDGFKAINDTHGHDAGDLLLQTMAQQLAGALRSGDLLARVGGDEFVAVGMGPLSGEETVEAAVHCFQRRLFEQSQVQLPLASQVLNYPGASVGVVAVDPASISIDDALRQADACMYAVKRQRRAQS
>NZ_CP022426.1|WP_034524069.1|3388562_3389309_+|transporter-substrate-binding-domain-containing-protein
MKKWIGFAALLFAAITQASQELGKLHYLSEEYKPYNYTDSAGNPTGLAIELLHQVWKKTNTPPQTITIMPWARGYYLLTQKPNVVLFATARTEARDPLFKWACPIGYAEIVLIGLAKNPLTLTKLEDAQQHTIGAVRADVGEQLLLNNGFDEQKIMAANRLPQALKMLTSGRVDLISTNKTTLMDLIASQQLDPAQFKVFWMLSSEQFCFAFSHPVSDELVKEFQNGLTQVLASSEFQQIQHKYFPVR
>NZ_CP022426.1|WP_034524070.1|3387700_3388447_+|transporter-substrate-binding-domain-containing-protein
MRIRLCCCLLLMSCLGTAHAGLTKLEYLTEEYPPYNFSNEAGQPTGLAVDLLQLIWQRSGTPAQAVRILPWARGYYLLTQKPNVVLFSTARTETRSHLFKWACPIGYSEYILLAHKSKPVQLGAVEQMNDYRISAVRADAAEQLLLNRGMDETRIIPANRLSQALRMLVSGRADLLATSKLAGYDAIKALQLNADDFTVAFVLDAEELCYAFSRQVDDDLVKQFQRAMTQALASPEYQALRQRYLPAP
>NZ_CP022426.1|WP_021140133.1|3387123_3387627_+|GDYXXLXY-domain-containing-protein
MRQLALFLTGLAILAGINFTVWRYEAAMTSGEVVLLRLAPVDPRSLMQGDYMRLNYDIARQLGTSRYNERINGSDTLVIRLDEHQVANWAADGKPEQLASNERLLRVRQSDNQWLIGPDAFFFEEGTGEQFEVARYGEFRLQGNGKALLVGLRDEQFKPVGNPRARW
>NZ_CP022426.1|WP_021140134.1|3386119_3387127_+|DUF4401-domain-containing-protein
MADLTPWQRLQQADLVEGEAPRDTQPHWSSRFLLGMVGWVAALFLLFFLFMSFSQLTRDANSALMMGAVLMAIAFGLNRFAQRSDLWDQFVLALALAADAWLLYGLIDQIDLHSAPLWLGLAALSLFIAALFEHWLIRLFHSFAAAILLTLGLACLGLQLLALPLVMVTLAFCWLQAERQPAHHQLYESLTLGLALSLLVLGRLHHPLWNEGASMLDELGLSRLPLWLNPLLCAALLLGVMIRLKLPLLYGLPLVLISAFIPGMGAGALVLVLGFHAGSMGLMTLAGLLLLGFGSLYYYDLGLTLMTKSWLLLGSGALLLGARQLLHVINARRPS
>NZ_CP022426.1|WP_021140135.1|3385144_3386083_+|DUF2157-domain-containing-protein
MHFTSRQTLLDWVRRGRLAQTHLPAALALCDLPPTSARWQWLFDRLLLWLGSLCLGAGLVFFVAFNWQELGRVSRLALLELPLLAMLVLLWRKPMTDTPRQALLLAMALNIGALLALVGQTYQTGADPWQLFATWALMLLPLAALGQSPLLWTTSWLLGQLALMLYWRLGLFSFFFGFDEEGLGWCLTLLNAALWGALLLAPTRFKLMPAWLPGLAAGLGVTLLTLLALFDAASPWVWPAWLGWLAAAYALWHHKFIAGLAMGCLSLIAVILTALGKWMDPDVDGFLLLSLIAIGLSVAASRWLQQQRRSHA
>NZ_CP022426.1|WP_005314579.1|3384334_3384892_+|TMEM165/GDT1-family-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMLAATLLNHAGAAWLGEFISRWLDPKVMTYLVAGSFIAMAAWILVPDKLDDEESPLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLTQVIAGTTLGMMLANVPVVLLGKLGADKLPLKGIRIACAILFAGLGVSTLIFA
>NZ_CP022426.1|WP_005314581.1|3383760_3384090_+|translation-initiation-factor
MSHDNNSHLVYSTDGGMIKEQTQPQSASPFPQDGTVRIRRETKGRKGAGVITIHGVPAEQQKTIATLLKKKCGTGGGLKEGIIEIQGDKRDLIKTELEKAGFSVKLVGG
>NZ_CP022426.1|WP_005314583.1|3383413_3383641_-|ferrous-iron-transport-protein-A
MVLAQLSPGQSARIKHMNHLERTLRRKLMVMGLLPQTEVLFLRAAPLGDPLQIQCQGICLSMQKSLALQIEVELV
>NZ_CP022426.1|WP_011191342.1|3392535_3393804_+|IS4-like-element-ISApu1-family-transposase
MTIINANYYLEQLLAPAALERIARLCKFCLRQRAITPAMLVPALLRAMGGDQVNDIAGLHRHFNALQLVNTHQVSYKPFHNQLRKESFALFMKALVERAIALRIDHQLKAASLGAFKQVLLHDGTSFAVHRRLAADFPGRFKTISPAAIECHMTMSLSEQSPLCMSVSADTAGERQFLPEAHTLTNCLLLADAGYIDRAWFEQVNDAGGFYLVRGTKSLNPKIIQAWRGDGREVPKLAGLSLREAGRRRCRAEVLDMVVKSGQVEYRLIRRWFAEEKRFCLWMTNLPRAAWSAEQVMSLYRCRWQVELLFKEWKSHNRLKGFVTGEKAIAEGLVWTSLLSLVMKRRVAQSVMSGALSMLKASKNSATWWLPLLEAVAHRALTEIRERLEWAADYLAKNACRTKQRKSIQNRTLEGVLNGLAA
>NZ_CP022426.1|WP_099369012.1|3394085_3395102_-|IS5-family-transposase
MFVIWSHGTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAIEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKAINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPQMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH
>NZ_CP022426.1|WP_076612160.1|3395174_3396215_-|IS481-like-element-ISAs19-family-transposase
MTTNEKVARRKLSLLELAKELNNVSKACKLIGYSRQQFYEIRRNYQTYGAEGLLDKLPGCKGAHPNRVAPEIEQAILDYSLTRPTHGPLRVAQELALQGINVSAGGVRGVWQRHDLLSKHDRLLRLEKTHREQTIELNDEQIRLLERFSPEFRERQIEVHYTGELVAVDTFFVGALKGVGKVYLQTVLDCYSRHAWGRLYTSKLPITSVHVLNETVLPFFETHEARVYTILSDNGREFCGRPDHHPYELFLQLEGIEHRTTKVRRPQSNGFIERLHRTLLDEHFRIKGRTTWYESVEQMQTDLDSYLEHYNTQRPHQGRMMEGQTPYSMFKKGLKLIPKEVRTKVA
>NZ_CP022426.1|WP_021141043.1|3396988_3398365_-|cysteine--tRNA-ligase
MLKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYCGYQLNYVRNVTDVDDKIIKRAAETNVTCDDLTERLIGDMHQDFDALGMVRPDVEPRATQHISEIIELVESLIAQDHAYVADNGDVMFIVDSYADYGKLSGQDLEQLQAGARVGVVDAKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHYDAESVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFKEAMDDDFNTPEAYSALFDLVREINRQKTEDMSVAAGLGARLRELGAVLGILQQDPDAFLKGNDADDEVAEIEQLIAQRNQARADKNWAAADAARNRLTEMGIVLEDSAGKTSWRRA
>NZ_CP022426.1|WP_005314539.1|3398556_3399054_+|peptidyl-prolyl-cis-trans-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFEEKETRAPIKNEAANGLSNKVGTVAMARTMEPHSASAQFFINVSNNDFLDFKSATTQGFGYCVFGEVTAGMDVVNKIKAVKTGNAGRMHQDVPVEDVVITKVTLAD
>NZ_CP022426.1|WP_021141042.1|3399043_3399754_+|DUF4269-domain-containing-protein
MQTDLCLLRDELTAAPAAVFPSARLTAGPNWRRFDYLALGNPRQRAAHALLNDTPLWGELQSLCLDVALVSTLAIGLDRPGSDLDILCQHSDPAALADLFAQRQWQSRALGSDIWLLEQALIDGVGTPWPIELYVTPARVDTLNGWRHLSLMAALIEHFGHDFYQTLRTLRLQQGLKGEAAICHLLKLPGDPYQALLTLEGHDLDQLDWQPQAQAPSAQPATFSSHPVIRAPCTPS
>NZ_CP022426.1|WP_021141041.1|3399750_3400515_+|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCSDRPDMTAALVRFLERDAPGADALYVLGDLFEFWIGDDDPNPLHHAIADAFAALRQRGVPIYFIHGNRDFLLGRQFAKRSGMTLLADPCVIDLYGERVLLSHGDLLCTLDLGYQKLRRITQLKWLRWLFLRLPLTRRLAIACKMRGQSQMENVQKSQTIMDVTPAAVDALLRQHGCQLLIHGHTHRPAIHDFTLDGQPARRIVLGDWFEQGSVLVCRPGEQRLEQRTLPSLNPAGAHESDNL
>NZ_CP022426.1|WP_017413027.1|3400595_3400844_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFITWIVLGLLVGILAKWIMPGRDGGGFFMTVLLGIIGAMVGGYVGTLLGLGSVTGFNLSSIAIATMGALIVLFVFNKIRS
>NZ_CP022426.1|WP_005314534.1|3400979_3401156_+|DUF3606-domain-containing-protein
MPDNNTLAHPLDAKSINVNDPYEMKLWIKTFECTEVQLKRAVKAVGTSGKAIRKHLKK
>NZ_CP022426.1|WP_034524459.1|3401294_3402068_-|glucose-1-dehydrogenase
MFQSLRLQDSVALVTGGGSGIGRAAALAFVRDGAKVVVAGRRELELLETVDLIHAQGGEALAVPTDVTDSAQVKALIAVTLAHFGRLDAAFNNAGVEGFAPISEMTEVEFDRVIATNLKGVWLSVKYELEAMTAAGCGGAIVNTSSWLTRGATAGSAAYSASKGGLDAMIRALALEAGPHGIRINNVNPGIINTPMAQRMGANEETLKPFVRLAPAGRIGGADDVGDVVAWLCSDEARFITGQSLLVDGGFTIAGLR

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Crispr_ID: NZ_CP022426_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_11

3431118-3431232

Orphan

Consensus_repeat	Method
GGGGGAAATGACGGATTAATGCCCAAGCCAAAGCTT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP022426_11

>merge|NZ_CP022426|11|3431118-3431232|CRISPRCasFinder
GGGGGAAATGACGGATTAATGCCCAAGCCAAAGCTTCGGCATCCACCAGGCGCCGCCATCTCGATACTCGTAACCCAAGGGGGGAAATGACGGATTAACGCCCAAGCCAAAGCTT

>NZ_CP022426|11|11|3431118-3431232|CRISPRCasFinder
GGGGGAAATGACGGATTAATGCCCAAGCCAAAGCTT	CGGCATCCACCAGGCGCCGCCATCTCGATACTCGTAACCCAAG
GGGGGAAATGACGGATTAACGCCCAAGCCAAAGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_021139630.1\|3437558_3438500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021139627.1\|3433948_3434434_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP022426.1\|WP_021139621.1\|3427155_3427935_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP022426.1\|WP_021139635.1\|3444141_3445092_-\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP022426.1\|WP_021139619.1\|3421438_3422644_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP022426.1\|WP_021139634.1\|3443089_3444019_+\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212519
NZ_CP022426.1\|WP_021139618.1\|3420934_3421303_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_021139617.1\|3420639_3420942_-\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NZ_CP022426.1\|WP_021139633.1\|3442365_3443025_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP022426.1\|WP_021139624.1\|3429258_3431028_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP022426.1\|WP_021139626.1\|3433439_3433952_+\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP022426.1\|WP_034523854.1\|3424228_3426079_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP022426.1\|WP_005320080.1\|3426297_3426942_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP022426.1\|WP_021139631.1\|3438717_3439737_-\|porin	unknown	unknown	gnl\|CDD\|225744
NZ_CP022426.1\|WP_005320086.1\|3427931_3428120_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183328
NZ_CP022426.1\|WP_021139632.1\|3440118_3442191_+\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_CP022426.1\|WP_005320074.1\|3423489_3424044_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP022426.1\|WP_021139628.1\|3434594_3436106_+\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP022426.1\|WP_021139629.1\|3436194_3437385_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP022426.1\|WP_021139623.1\|3428263_3429259_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_021139627.1\|3433948_3434434_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	5.50987e-29
NZ_CP022426.1\|WP_021139621.1\|3427155_3427935_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	4.20052e-153
NZ_CP022426.1\|WP_021139619.1\|3421438_3422644_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.42025e-34
NZ_CP022426.1\|WP_021139634.1\|3443089_3444019_+\|histone-deacetylase	gnl\|CDD\|212519	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11. Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients.	1.71116e-130
NZ_CP022426.1\|WP_021139632.1\|3440118_3442191_+\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_CP022426.1\|WP_021139617.1\|3420639_3420942_-\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	3.3746e-10
NZ_CP022426.1\|WP_021139633.1\|3442365_3443025_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	9.80532e-47
NZ_CP022426.1\|WP_021139624.1\|3429258_3431028_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP022426.1\|WP_021139626.1\|3433439_3433952_+\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	1.04123e-46
NZ_CP022426.1\|WP_034523854.1\|3424228_3426079_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP022426.1\|WP_005320080.1\|3426297_3426942_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	8.37003e-165
NZ_CP022426.1\|WP_021139631.1\|3438717_3439737_-\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	9.54791e-41
NZ_CP022426.1\|WP_005320086.1\|3427931_3428120_-\|hypothetical-protein	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	8.89237e-22
NZ_CP022426.1\|WP_021139635.1\|3444141_3445092_-\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	1.07261e-152
NZ_CP022426.1\|WP_005320074.1\|3423489_3424044_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	1.91019e-81
NZ_CP022426.1\|WP_021139628.1\|3434594_3436106_+\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP022426.1\|WP_021139629.1\|3436194_3437385_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP022426.1\|WP_021139623.1\|3428263_3429259_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	7.02921e-169

>NZ_CP022426.1|WP_021139624.1|3429258_3431028_-|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQDSWPVFKRLLGYVRDRKLGLVGGIIGMLGYAAVDTTFVYSIKPLIDQGLNGNDNSVLKWMPFFVLGIVALRGCATFLSNYCMAWVGNHVVMRLQQQVFSHLMAMPMSFFDRQNTGNLLAKVTYDAGQVSSAASSTLVSLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGILIGLISRRFRKISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQQVEEKRFFRVSNHMRQQTMKMVAADAIGSPIVQMVASVALAVFLYVATIDSVKATLTAGTFTVMVTSMMMLLKPLKSLTDVNNQFQRGITACQSLFGLLDSTPEEDTGTRTLDRARGEIEFRNVTFTYPTKDTPALHNVSFKVEAGKSVALVGRSGSGKSTIASLLTRFYDVEQGEILLDGVNIREYRLSELRKQYALVSQHVHLFNDTVASNIAYAAEERYSREEIQQAARIAHADEFVSKMTQGYDTVVGENGASLSGGQRQRIAIARALLRDAPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHEALMANQGTYAQLRAIQFGNTSVGNKG
>NZ_CP022426.1|WP_021139623.1|3428263_3429259_-|tetraacyldisaccharide-4'-kinase
MLQQLWYGKSGWRWLLAPFALLFAILSGARRFAYRRGWFKAYRATVPVVVVGNISVGGNGKTPVVIWLVEQLQARGFRPGVVSRGYGGKAPHYPYRLDAVSTTAQAGDEPVLIARRCGCPVVVAPKRADAVRLLEQSGEVNIIITDDGLQHYGLARDIELVVVDGVRRFGNACLLPMGPLREPVTRLKRVDAIICNGGEPAKGEYAMRLVADVPRRVRDDAQATEPLPSAVDALAGIGHPPRFFATLAGLGYELHQQVGYGDHHAFDRDELVARFGQRPLLMTEKDAVKCRTFALDSWWYLPVSAELPTSLLDTLLQKLPSLTVPRSGSGL
>NZ_CP022426.1|WP_005320086.1|3427931_3428120_-|hypothetical-protein
MALDIKLLDIIACPVCKGKLHYNKAVHELVCRFDKLAYPLEEGIPVLLENRARQLNSDEMPS
>NZ_CP022426.1|WP_021139621.1|3427155_3427935_-|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDERVHSALASFAEQAGVEVCMTSQDHQSGTERLAEVCRHYGFSADTIVVNVQGDEPLIPPAIIRQVADNLAAASAPMATLSVPIQDVEEAFNPNAVKVVTDKEGYALYFSRACIPWDRDRFAASDRAAGSHEQIGDHYQRHIGIYAYRAGFIQRYVDWAPSVLEQVEALEQLRVLWYGEKIHVAQALQAPPVGVDTQADLDKVRALLAN
>NZ_CP022426.1|WP_005320080.1|3426297_3426942_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVTFCRQHHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRYGMLDADTL
>NZ_CP022426.1|WP_034523854.1|3424228_3426079_-|excinuclease-ABC-subunit-UvrC
MTTSEPLFDSKAFLSAVTHQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRTNVDSIKTRTLVRQIADIQVMVTHTETEALILEHNLIKQYQPRYNVLLRDDKSYPWIIITAHQHPRIGVHRGARKIKGEYFGPYPSGGAVRESLHLMQKIFPVRQCEDAVYANRTRPCLLYQLKRCAGPCVAGLVSEAEYAQQVGLAKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDDLDVIGVAFEQGAACIHVLFIRQGKVLGSRSYFPKVPSDTPLEEVVQSFLLQFYLSGQGGRQIPSEVLLDVALEDETLIADTLSQTAGYKVRVVSRTRAERARFIKLASINAETALRSRLAHKSTTTARFSQLEELLELERPIVRMECYDISHTMGERTVASCVVFNREGPLSSEYRRFNIDGITGGDDYAAMEQVLERRFGKLQEPDKVPDVLFIDGGLGQLRRAEEILARQQEFLGGKYPLLVGIAKGVTRKAGLETLIMGESHEELHLPADMPALHLIQHIRDESHRFAITGHRARRAKARTSSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVDDLAKVPGISQELAQSIHDALRSL
>NZ_CP022426.1|WP_005320074.1|3423489_3424044_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYVPYQWSYLAAAVVFTLAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSAVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF
>NZ_CP022426.1|WP_021139619.1|3421438_3422644_-|site-specific-integrase
MQTKFRFTNAAIKALPAQQRDAGATELEFSDTEVIGLKLLSGKSQGSKRFLLRYTLQGKKRSIALGRFGDIDVSQARTIARKYKAMLAEGIDPVAERDSYKTEPTLSEFFWQTFLPHLKTIGKRSINSDIQRFKHNIEPRFGAMRYRQLKAMDVLQLQSEMVHPNNPQQTAYAPSTANRVLAQLKTMGSYAVRWGILDTNEAAKIKLLKEDNARTRFLSIEEMKRVIEVALQDRNQAAGSFIAMLYLTGARKSEVLLAKWEHVNWEDKTLFVPLTKNGKSRIIYLSALAIDILEKLPRIAGNPYVFASQHIRCQGKPIGEPRCAYERVLQKAGIEDRDEVCFHTARHSVASALVSSGQYSLYDVKAQLAHASIQSSQRYAKLTSERSRNISEGLSSMIQAE
>NZ_CP022426.1|WP_021139618.1|3420934_3421303_-|hypothetical-protein
MKTCMEWPEESLLAAYPALHASVMEQIIEPFSSVEEARAFWDATGCSLVIIEMTDSMSEFQAMPQHTQNQVMFGLRYPEQEFAISEDWRLLLAILNDEGAGIYLLIHSDAPLLPTLEAMHHE
>NZ_CP022426.1|WP_021139617.1|3420639_3420942_-|DUF1232-domain-containing-protein
MSNPSHSDIMRKLKEIKGIKELLEKAVLLYVLLTDGDLPVWCYALVIGALAYLVNPFDVVPDPIPFAGYLDDLSVITSALAALPVKSHHRQSAKDRMRSL
>NZ_CP022426.1|WP_021139626.1|3433439_3433952_+|DUF2062-domain-containing-protein
MPKRIIKRWMPDQKTLKENKRLQLFGNLLLDNNLWHLNRRSAAGAFGVGLFMAWIPVPCQMLLAAGGAIACRVNLPLAVALVWLTNPITMPPLFYAAYRVGCLLLGHPAQHVDIEFTWHWLSSVFETVAPPLLLGSLALAMLSSVLGYVTIRLMWRLSIIRQWRRRKARA
>NZ_CP022426.1|WP_021139627.1|3433948_3434434_+|DUF2062-domain-containing-protein
MKLPRLKLDPDTLRQQKWFALFGDRLLAPALWQGGSRALSGAVAAGIFACWIPIPMHSLIAVALALAFSLNLPLALLAVWFNNPVTLPFMYLYAYRTGCLVLHKTPEPFHLTWSLHWLEHEAATLVPPFLLGSLLLAVLTAILGAVLTLLLLQLGKLIRPR
>NZ_CP022426.1|WP_021139628.1|3434594_3436106_+|DUF853-family-protein
MAAPLTLAYANGQPLSLLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGLGAAGARSSKLDARLAQLGIPAPAFAASPTLFWDLFAEQGHPVRATVSDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFTGENAKSLTTRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDEVGHGHINVLAASKLTQSSRLYACFLLWLLSELFEQLPEVGDPDKPVLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRVQHALRAFTPSDQKAVRIAANTLRANPAFDAAGAITELGVGEALVSLLDEKGRPSVVERAFIAPPASRIGPLSEAEQLALIRGSLLYGRYEIREDRESAFERLNDGKRENAGSLTDPTETPPAAGGLLDTLNCILFGRTGPRGGQHDGVVQTAARSVASTIGNEVGRQLVRGVLGSLLGGNKRRR
>NZ_CP022426.1|WP_021139629.1|3436194_3437385_-|aspartate/tyrosine/aromatic-aminotransferase
MFEKVVAAPADPILGLTEAFRADSRSHKINLGVGIYKDETGATPILHCVKKAEQKLLTDEKTKNYLGIEGNIEYGRIVQQLLFGQDSALVASGRAKTAQAPGGTGALRIAAEFVVRNGLAKTIWISDPTWANHVSVFQAAGLSVKWYKYYDAATKGLDFAAMQASLAEVQPGELVLLHGCCHNPTGIDPTSDQWRALAKQSAAAGWLPLFDFAYQGFARGIEEDAEGLRIFAECHDELLVASSFSKNFGLYNERVGAFTLVGASKEIADVAFTQVKTVIRANYSNPPSHGAAVVTAVVSDPALYAEWVEEVAAMRVRIREMRELLVEKLAALGVSQDFSFIREQNGMFSFSGLSKEQVEQLKSEFAIYIVGSGRISVAGITRANIDPLCEAIAKVL
>NZ_CP022426.1|WP_021139630.1|3437558_3438500_-|hypothetical-protein
MIDFSHPQWRQLARQLLDHSPVVIRARQYLPLVGLLKDNQLLLAFGNHSYELTPAGRRYLTRELMLAEIATAPPEPEEWLQAHGWQLGERVNDRVLAALYRKPEATFSPVEQIDFEDKGIRLCADQLLRLRAPVPFSLFFSGGTLLDAAPWLQALGEVAVPERTLAGLGKILWGEGEIERVITTDSVGAFAELSLCAGTLLVWAPATAQLALQQMVAALPPKVQWSHLTSLDPAGVDRVLALAQWLGRPASWWLPTSLPPIMAAYAQPLTDSRPWEPSRIPKPLLAVCSSLVESNGGLSAEVCALAPAWHAIG
>NZ_CP022426.1|WP_021139631.1|3438717_3439737_-|porin
MKKTILAIAIPALFASAANAAVIYDKDGTTFDIYGRVQANYYGEHDDTDGELIGSSRLGWSGKVALNNTWSGIAKTEWQVASENSTKQDKEFDARHVYVGFDGTQYGKIIFGQTDTAFYDVLEPTDIFNEWGDVGNFYDGRQEGQVIYSNTYGGFKGKLSYQTNDDTVEKITDVGGSIKKTVFTDVKRNYGYAAAAGYDFDFGLGLNAGYSYSDLESKTNSDNGDKSEWAVGAHYAINGFYFAGMYTQGELENDTTGYKGKGRGYELAASYNVDAWTFLAGYNFTEAKENNTSYQDKVDETLLGVQYNFTSKLKAYTEYKIQNIDKLDDEWTVALQYNF
>NZ_CP022426.1|WP_021139632.1|3440118_3442191_+|ATP-dependent-DNA-helicase-DinG
MLSTRLKAAIRNTYRQIADGLPGFVPRKEQNFLVAEIAKTLTGEYDKQRRILVAEAGTGIGKSLSYAQGAIPVARLTQKKLVISTATVALQEQLIHKDLPFYHRHSELPFRFMLVKGRQRYCCEHLLEQAASGTEMANFEFNFDALSKHKPSDSDKERYQALWQAYTDGKWDGDRDNWPTTIPDLCWNRIAADRHTCNKALSHHQHCPFHRARNDMDAADVLVVNHALLLSDLTMGGGIILPPPDECLYVLDEAHHLPTIARDHGAASASVKGSRRWLEKLTQSAGKLARTLNKDSLLDPQLKLQDALASLQPDLKALDQWLGANDKLFNGEAHYRFAEGVLPDPLPMLAENLKEASKKALRALDRMQGAIGEALKDGEIRRKEAEPLLAESGFYLQRLESFCALWEMLGRHVPEGKTPLARWMAKSDDGDIWLHASPIEVGYLLEEWLWSKCLGAVLVSATLTALSSFSYFRHQVGLKEHDGTRYLRLRSPFDYQKAELYLPRMEHEPSSPAFTEELISVLPRILAGKEASLVLFSSYRQMNEVVAGLRAKGLSLLVQGEASRNALLTLHKQKCDGGQPSILFGTGSFSEGLDLPGHYLTNLVITKLPFAVPNSPVEEATAEWVEKRGGNPFLQLTVPEASRKLIQACGRLIRKEADRGRVTILDRRLLTKRYGKGLLDALPPFSRRID
>NZ_CP022426.1|WP_021139633.1|3442365_3443025_+|DUF2057-domain-containing-protein
MKLTVLVPALAGLLWAGSALADAQLEVINPYVAQLIDGQPINPKLLDKSNTFPIKAGAHQLVVAFEGNYSSRSEIKLVTAEPLVINFTAADNQKLVLDFKKPRNESEAKQFLKDQKVVLKDKNSGQIVASEQFVMPKVEGFQLTRDYQQELLGMGKAFNQPKSVAVSTAAVMAAASAPAQVAPSKAQSNPEALTQLQSWYNKADAETRKAFQIWVIQQQ
>NZ_CP022426.1|WP_021139634.1|3443089_3444019_+|histone-deacetylase
MSLCIFHHPYYSSLALPERHRFPLAKYQALFQTLSTRGYPLQETQAATRAQICRVHDSDYVSAALAGQLDDNAIRQLGFPWSPRLIERTQLSVGATLAASRHALEQGCGLQISGGYHHAHRAHGSGFCLFNDLVIAAQTCLDEGRCDQVLIVDLDVHQGDGSAALCAGRRDIITLSLHGEHNFPRHKPSSHLDFALPSGMQDDAYLDTLAQALSLALRLYNPDLVLYQAGVDVHHADELGYLALSDEGIRQRDAMVFDCAIKHGLPVAAVPGGGYRREWQQLIPLHMTLFEEAHKRFGQTSMPALYQGP
>NZ_CP022426.1|WP_021139635.1|3444141_3445092_-|ribosome-biogenesis-GTPase-YlqF
MSINWFPGHMHKARKEIAEVMPQVDVIIEMLDARIPFSSENPLVPELRGDTPVIKVLNKADLADPEITALWVAHMEKEKGIKALPLTQQEPEKIRQLLTLCHEMLPERNLELRGVRAMIMGIPNVGKSTLINTLAGRIIARTGNEAGVTKSQQRIKLDNNVVLTDTPGFLWPKLNPPSCGYRLAVTAAIKDTVFDYADIAMFAADYFIKAYPERIKARYQISELPETEIELLEMIARQRAFMRKGGLADLHKASEILINEFRSGLLGRISLETPEMVSVEIVEAADEAEQKAKEKAEREDERQARARRKYAKKRQK

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Crispr_ID: NZ_CP022426_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_12

3950045-3950122

Orphan

Consensus_repeat	Method
ATCATCCGTATCACAGGGAATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_12

>merge|NZ_CP022426|12|3950045-3950122|CRISPRCasFinder
ATCATCCGTATCACAGGGAATGAAGCATGCACATCTGGCGCATCACCCCCTTATATCATCCGTATCACAGGGAATAAC

>NZ_CP022426|12|12|3950045-3950122|CRISPRCasFinder
ATCATCCGTATCACAGGGAATGAA	GCATGCACATCTGGCGCATCACCCCCTTAT
ATCATCCGTATCACAGGGAATAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_005317360.1\|3956738_3957002_+\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179912
NZ_CP022426.1\|WP_021138176.1\|3946658_3947141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225527
NZ_CP022426.1\|WP_021138166.1\|3959565_3960138_+\|serine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226075
NZ_CP022426.1\|WP_034523396.1\|3941629_3943174_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP022426.1\|WP_021138172.1\|3952077_3953181_+\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|182737
NZ_CP022426.1\|WP_021138173.1\|3950168_3952085_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP022426.1\|WP_021138177.1\|3943912_3946492_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP022426.1\|WP_021138174.1\|3948408_3949053_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP022426.1\|WP_017412924.1\|3957846_3958812_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP022426.1\|WP_005317340.1\|3949238_3949580_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|272901
NZ_CP022426.1\|WP_021138168.1\|3957083_3957761_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP022426.1\|WP_021138167.1\|3958932_3959424_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP022426.1\|WP_021138175.1\|3947154_3947301_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235511
NZ_CP022426.1\|WP_021138170.1\|3954120_3955074_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|236733
NZ_CP022426.1\|WP_005317324.1\|3943260_3943767_-\|zinc-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|369304
NZ_CP022426.1\|WP_021138179.1\|3939898_3940363_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP022426.1\|WP_005317320.1\|3940466_3941351_+\|CNNM-family-magnesium/cobalt-transport-protein-CorC	unknown	unknown	gnl\|CDD\|226910
NZ_CP022426.1\|WP_005317335.1\|3947300_3948332_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP022426.1\|WP_021138169.1\|3955268_3956459_+\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|182736
NZ_CP022426.1\|WP_021138171.1\|3953180_3954179_+\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_005317360.1\|3956738_3957002_+\|YbeD-family-protein	gnl\|CDD\|179912	PRK04998, PRK04998, hypothetical protein; Provisional.	3.55264e-51
NZ_CP022426.1\|WP_021138176.1\|3946658_3947141_+\|hypothetical-protein	gnl\|CDD\|225527	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane].	1.77578e-27
NZ_CP022426.1\|WP_021138166.1\|3959565_3960138_+\|serine-hydrolase-family-protein	gnl\|CDD\|226075	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only].	8.65125e-35
NZ_CP022426.1\|WP_034523396.1\|3941629_3943174_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP022426.1\|WP_021138172.1\|3952077_3953181_+\|rod-shape-determining-protein-RodA	gnl\|CDD\|182737	PRK10794, PRK10794, rod shape-determining protein RodA.	8.58283e-180
NZ_CP022426.1\|WP_021138173.1\|3950168_3952085_+\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP022426.1\|WP_021138177.1\|3943912_3946492_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP022426.1\|WP_021138174.1\|3948408_3949053_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	1.69574e-80
NZ_CP022426.1\|WP_017412924.1\|3957846_3958812_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP022426.1\|WP_005317340.1\|3949238_3949580_+\|ribosome-silencing-factor	gnl\|CDD\|272901	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors].	1.6975e-50
NZ_CP022426.1\|WP_021138168.1\|3957083_3957761_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.18376e-148
NZ_CP022426.1\|WP_021138167.1\|3958932_3959424_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91979e-12
NZ_CP022426.1\|WP_021138175.1\|3947154_3947301_+\|hypothetical-protein	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	8.56991e-09
NZ_CP022426.1\|WP_021138170.1\|3954120_3955074_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|236733	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA.	1.38755e-61
NZ_CP022426.1\|WP_005317324.1\|3943260_3943767_-\|zinc-ribbon-containing-protein	gnl\|CDD\|369304	pfam07295, DUF1451, Zinc-ribbon containing domain. This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.	2.22691e-52
NZ_CP022426.1\|WP_021138179.1\|3939898_3940363_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	1.16027e-64
NZ_CP022426.1\|WP_005317320.1\|3940466_3941351_+\|CNNM-family-magnesium/cobalt-transport-protein-CorC	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.7551e-143
NZ_CP022426.1\|WP_005317335.1\|3947300_3948332_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	3.31488e-108
NZ_CP022426.1\|WP_021138169.1\|3955268_3956459_+\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|182736	PRK10793, PRK10793, D-alanyl-D-alanine carboxypeptidase fraction A; Provisional.	9.11621e-161
NZ_CP022426.1\|WP_021138171.1\|3953180_3954179_+\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	2.7557e-129

>NZ_CP022426.1|WP_005317340.1|3949238_3949580_+|ribosome-silencing-factor
MQGQELQAFIVDKIDDMKGRDIITLDVRGQSSITDTMIVCSGNSSRHVSAIAHNLASEARHAGLDLLSVEGQLTGEWVLVDLGSVIVHVMQDEYRDFYQLEKLWSGAAQVNAQ
>NZ_CP022426.1|WP_021138174.1|3948408_3949053_+|nicotinate-nucleotide-adenylyltransferase
MLKAPIGLLGGTFDPIHIGHLRPAIEARDALGLAEIRLIPNHIPPHKASPFCSSEQRLAMVRLAAEENPGFVVDERELKRDKPSYTIDTLMALREELPDTPLCFLMGMDSLLTLPSWHRWQALLDYAHLVVSVRPGWQPDYPTEVADLLAHHHTTDATALHRRLAGHIWLADNLPIALSATRLRELLAAGQDPRYLLPASVADYIRQQGLYQAD
>NZ_CP022426.1|WP_005317335.1|3947300_3948332_+|DNA-polymerase-III-subunit-delta
MRIYPEQFADHLKTGLKPCYLIFGDEPLLKLEAIDAIRQVARKQGFDERHTFVVEAGLDWNQVYDACQAMSLFSARQIIELELPAKVDKDLAARISEIGKQLHPDLLLVLSGGRLNQTQMKAAWFDKLSQGGTYVPVNHPEPRFFPRWMGARFQRFGLKALPDAINFMCHSYEGNLLAASQEIEKLTLLAPPQPISVAYLQETIIRHAHFTPFQLIDTLLEGKVNRAQRILLALRAEGTEPGMLSWALCRELEQLTELALAARAGQPLVEHFSRLRIWQSRQQLIQQALTRLPFTKLQQLWQLMAQLDDALRRFDTERAWLMLQTLALGFRDGTPLPLLEPAS
>NZ_CP022426.1|WP_021138175.1|3947154_3947301_+|hypothetical-protein
MRVYPEQFADHLKAGLKPCYLVFGDEPLRNLQEQAIALATHRLNQAKF
>NZ_CP022426.1|WP_021138176.1|3946658_3947141_+|hypothetical-protein
MGTTLTRWMAIALMGLLLQACGFQMRGTAIPPELMTMKVVGDNKSDFYRLVTTRLKAAGVQLADKEGIPVLTLAGVRSTSQVASVDAIGQDREYLLGYSTQFTVSMPGKPTQVFPITFNRSFLNKPDAALASSREQEQLGKEMQEQAASLVIRQLSQVKF
>NZ_CP022426.1|WP_021138177.1|3943912_3946492_+|leucine--tRNA-ligase
MQEQYVPQSIEPAVQKHWDAKKTFKAVEKVDKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVISRYQRLNGKNVLQPIGWDAFGLPAENAAVKNNTAPAPWTYENIEYMKNQLKMLGLGYDWDRELATCKPDYYRWEQWFFTKLYEKGLVYKKTSSVNWCPNDMTVLANEQVVDNCCWRCDTPVEQKEIPQWFIKITDYAEELLNDIDNLEGWPEMVKTMQRNWIGRSEGVNIHFQIADQDGDLEVYTTRPDTLMGVTYVGIAAGHPLALQAAATNPALAAFIDECKNTKVAEAELATMEKKGMATGLYAIHPLDGRKVPVWVANFVLMNYGTGAVMAVPGHDQRDHEFATKYGLEIKAVIKQADGEAPNVIEAAYTDKGVLFASGEFDGLEFQAAFDAIASKLEALGKGKRTVNFRLRDWGVSRQRYWGAPIPMLTLADGTVVPTPEDQLPVLLPEDVVMDGIQSPIKADAEWAKTTYNGQEAFRETDTFDTFMESSWYYARYCSPDYDKGMLDPAAANHWLPVDQYIGGIEHACMHLLYARFFHKLLRDAGLVNSDEPFKRLLCQGMVLADAFYYKDEKGGNVWVSPTDVKVERDDKGRITKAIDNDGREVIHSGMTKMSKSKNNGIDPQLMVERYGADTVRLFMMFASPAEMTLEWSDSGVEGAQRFLRRLWRLTFEHVSAGAVPALDVAVLTSEQKAVRRELHKTIAKVSDDVGRRQTFNTAIAAIMELMNNLAKLGTDEQDRALMQEALEAVVVMLSPITPHIGFELWKMLGKGDDVDHATWPVADEAAMVETEKLVVVQINGKMRGKLTVPAEISQADVEKLAMADASVQKFTDGLTVRKVIYVPGKLLNIVAN
>NZ_CP022426.1|WP_005317324.1|3943260_3943767_-|zinc-ribbon-containing-protein
MDKRQKGYEAFIAELQKQWQETEQFQGERLNRMIAKVQAYLEAASDLTQDELALIAEYVKRDLGNYELSRNDDKARSDEAVEESAFMLALKDTAWSWLADVTDRAQVEWRELADELEHKGVYEAGDWVGLGVMVCEQCGWRHTVLHPQPLDTCPECGGHEYHREPLSP
>NZ_CP022426.1|WP_034523396.1|3941629_3943174_+|apolipoprotein-N-acyltransferase
MKSSPVKSKLLTSLFAMASGALAVLAFSPFDYWPLVIPSLLGLYALLDKANPKQAAWRGFGYAMGLFLPGLWWIHVSMTMFGGIMLPVAFVLLAGLSAYLALYPALACWAFARFFSGRHWSRWLLAFPALWLVADWLRGWVMTGFPWLWFGYSQIDGPLKGFAPILGVQGITLALLLSTSALWLVWQNRKPVWLLVPVALIGAAHGLMQLNWVTRGEPVKVALVQGNIAQSLKWDPEALVPTVRTYQDLSRENQDADIIIWPESAIPAIEKEMGNYLESLDKAMKVNDTGLLAGIVHYDFEQQRFFNTVLGMGVQDADGKEAYHYEHKNRYYKHHLLPIGEFVPFEDLLRPIAPFFNLPMSSFSRGDEQQPNLIAKGLKFAAAICYEIIFPEEVRRNVQPDTDFLLTVSNDAWFGTSIGPWQHLQIARMRALELARPLLRGTNTGITVVTEIDGSIIGQIPQFEAGVLRAEVRPAHGSTPYLRFGDWPLYGMTALLLGLALALRPRAHPWAREL
>NZ_CP022426.1|WP_005317320.1|3940466_3941351_+|CNNM-family-magnesium/cobalt-transport-protein-CorC
MTDDHPSTGSPKKTWLDKLSQLFQGEPRDRNDLVDVIADAEERDLIDQDTKDMIEGVLEIAELRVRDIMIPRSQMVTIEKSQPVDDILPVIIESGHSRFPVINEDKDHVEGILLAKDLLPFGFGGHHASEPLQLEKILRPTVIVPESKRVDRLLKEFREERYHMAIVVDEFGGVSGLVTIEDILELIVGEIDDEFDDIEDEPDEIRRISKRVFAVSALTEIEDFNDFFGTQFSDEEVDTVGGLVMHAFSHLPKKGEEIELQGYLFKVMHADRRRLQQLQVKIPDNHVAAQSEAQ
>NZ_CP022426.1|WP_021138179.1|3939898_3940363_+|rRNA-maturation-RNase-YbeY
MSVTLDLQLACADTDGLPGEAQLQGWLDGTILGFQEEAEVTVRIVDEAESRELNLTYRGKDKPTNVLSFPFEAPPGMELPLLGDLVICRQVVEQEAAEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMEQLERDIMQELGFADPYLNDEE
>NZ_CP022426.1|WP_021138173.1|3950168_3952085_+|penicillin-binding-protein-2
MLKNRIEMRDHSAEGRLFFRRTLVAYIGMVVLMLVLLGNLYYLQVESFETYQTRSNDNRIRVVPVAPPRGLIYDANGVLLAENRPVYSLEIVPEETRDLDKTADELITLLALPEGTKEKFLAEVKRQRRFKPVPLFEKLTEYQVALFSVNQHNFPGASIEAYLKRYYPFGDTLTHALGYVAKINTQDEARLKKEEKFANYAATKDIGKQGVEKFYEDQLHGVAGYQEVEVNNRGRVVRTLKFQPPEPGKDIYLNIDIRLQLKAQELLAGRRGAIVMMDPNTGAILAMESSPSYDPNLFVTGISNTNYSALLNDPARPLVNRTTQGIYAPASTVKPMMAVMGLNEGAITANYRYFGGPSFSIPGTTKKFRDWRKWGHGWLDVYRAIEVSADTYFYDLAYRVGIDKIHSYMTKFGFGQYSGVDLYEETRGVMPSRDWKMARWRQPWYQGDTISIGIGQGYWSSTPIQLAKATSILTQNGHDVTPHLLKSTASQEGVVNAPVNPNIALQAKSDSYWQVARDGMWRVINGHEGTGRRAFANTPYKAAGKSGTAQVVGMKENQVYNASTMKVEHRDNALFVAFAPFDAPKAVVALVLENAGGGSSMAAPVARQMLDAYLVPPEPQLPPAPKPSSPPSEVVPNE
>NZ_CP022426.1|WP_021138172.1|3952077_3953181_+|rod-shape-determining-protein-RodA
MSNSSRQQSLWYKLHIDLPLLLGLLALMSLSMVVLYSASGQDVDSIVRQLVRGGLAFGLMIGLAQLPPSLYARWAVPLFVVVVLLLIAVDVFGHIGKGAQRWLDLGFMKFQPSEVMKLSMPVMVAAWLSRHSLPPKFSHVIIALLMVLLPTLLIAAQPDLGTSILVAASGFFVIFLAGISWWLIALAVMLICAFMPVLWFFLMHDYQRQRVLMLLDPEKDPLGRGYHIIQSKIAIGSGGVFGKGWLQGTQSQLEFLPERHTDFIFAVFSEEFGLVGVALLLVIYLYIISRCLFISMQAQNSFERLLGGALTLTFFVYVFVNMGMVSGILPVVGVPLPLVSYGGTSMVTLMAGFGILMSIQTHRRLLA
>NZ_CP022426.1|WP_021138171.1|3953180_3954179_+|lytic-murein-transglycosylase-B
MKSWWLALALCSLAADATVSPERLSQLAEQQQVPLAALQDAAAKAQLRQEILDTISRPWEAKPWYRYRPLFVTPSRIQDGVSFWQRHADVLARAEQTYSVPAALIVAIIGIETFYGRQMGRHSVLDSLYTLGFHYPERSDFFAKEFAQLVLLAEEEQWPLTTLKGSYAGAMGMGQFMPSSYRHYAVDFDGDGRRDLFRNPVDAIGSVANYFAEHQWRWGESAVEPALIGLAPVSTLLRPEPELKQQWAELAAAGIEVATQLAPQTPVKLLALEQADGPEYWVARHNFYVITRYNRSPLYAMAVHQLSQAIQEAYASEPQISPAQPDLVVGRL
>NZ_CP022426.1|WP_021138170.1|3954120_3955074_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MHQSHKFLPLSLTLLLAACSSQPEQLPLPQAPMPQEKPQVIEIPQATGAIPRPEPLSASGNRDYWIGKQKNEVWRNIKHYTEEGTASWLAPDLDGQKTANGDVLDSKLFSAAHRNLPLPSYVRVTNLSNGLETIVRVNDRGPFGSDRLIDLSYAAAEQLDMVASGEARVRLELINDTPDQMMIIEPMKPIAMTPTTAAAAAPKTISQDGFLGEPTALAMATPAAAPVKAPAAKPAPAKAAAPASSGDGKMIQVLASGSKERAEAMGKVMTQRYGVPYQVVTHNALFRVLLGPIAADQQATLLAQIRQGGLEQAFIVP
>NZ_CP022426.1|WP_021138169.1|3955268_3956459_+|serine-type-D-Ala-D-Ala-carboxypeptidase
MSKFARSVILASLISATAHANTPVPTPNAAPMVVPAAPEISAKAHILIDYYSGQVLAEDNADERLPPASLTKMMTSYIIGHELLEGNIKNTDMVTISKNAWSKNYTDSSKMFIEVGKQVSVDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNAWSAKLGMKDTQFKNPHGLDEEGHYSTARDMARLGQALIHDQPEEYKIYAQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGHVSQVGYNLVSSATNNEGMRLIAVVLGASSEGSRAAESKKLLTYGFRFFQSLTPYKAGTELVTQKIWMGDKPEVKLGVDKDVSVLVTRGQGNNLKADFQLESELKAPLAKGQRVGTVFLKQGDKEIKQVPLVALEEVQEGGLMSRLWDYLVLLVTSWFK
>NZ_CP022426.1|WP_005317360.1|3956738_3957002_+|YbeD-family-protein
MNTKFDELLEFPCKFPFKVLGVADPALPDLVVEVLQQHAPGTYSPTVQPSTKGNYHSVRVTVTAQSKEHIEAMYTALGKIELVRYVL
>NZ_CP022426.1|WP_021138168.1|3957083_3957761_+|lipoyl(octanoyl)-transferase-LipB
MSLQIPAQPQLLVRQLGRRPYQPVWDAMKAFTDNRTSDTPDEFWVVEHDPVYTQGQAGKAEHLLAPGDIPVVQSDRGGQVTYHGPGQLVLYVLVDVRRSKLSVRELVTCLETAIINTLAKSDIQAYAKADAPGVYVTNELGMEAKLASLGLRIRKGCSFHGLALNINMDMTPFLRINPCGYAGMAMTQTSALGGPQSVAEAQAILVAELASLIGYQTITNANDTP
>NZ_CP022426.1|WP_017412924.1|3957846_3958812_+|lipoyl-synthase
MSKPVRMEPGVKLRDGDKMALIPVKFMPDPNEEVLRKPDWMRIKLPPSSQKIEHIKSTLRKNKLHSVCEEASCPNLAECFNHGTATFMIMGAICTRRCPFCDVAHGRPLALDPDEPQKLALTIKEMGLKYVVITSVDRDDLRDGGAQHFADCIKQIREHSPQTRIEILTPDFRGRMEQALEVFRETPPDVFNHNLETAPRMYRVARPGADYKWSLELLRRIKEMHPHVPTKSGVMMGLGETNEEIVQVLKDLREHGVNMLTLGQYLQPSRHHLPVKRYVPPAEFDELKDVAMGLGFSHAACGPFVRSSYHADLQAKGEEVK
>NZ_CP022426.1|WP_021138167.1|3958932_3959424_+|GNAT-family-N-acetyltransferase
MPTPLVRLLPMSAAYYSVFYDRSLEDYAQDLASNHGYDLATARRKSEASLLQYLPQGIATQGHCLLCIMPGEVTGEEAKPLGYLWHAINADDDATFIYDFYIDPALRSQGYGKAAIAALEASLRVSGISQIKLRVAYDNPRALALYQEAGFIITGHNMAKLLG
>NZ_CP022426.1|WP_021138166.1|3959565_3960138_+|serine-hydrolase-family-protein
MSHTRVFIVHGYTASPQSHWFPWLKEKLESRGIQVEVLAMPNPHHPEPDAWDQAMDRLVQDHDEHTFLLGHSLGCITILRQLSRLPASRRVGGILLVSGFDQPLHTLPELDAFMTQRYDPAHIMTLAPQRVVVASRDDAIVPYRYCQHLSEQLAAPLYSLEQGGHFLDRDGFLTLPLVHDRLLGMITPAE

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Crispr_ID: NZ_CP022426_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022426_13

4710371-4710469

Orphan

Consensus_repeat	Method
AACTGATAGTTCAATCTTTATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022426_13

>merge|NZ_CP022426|13|4710371-4710469|CRISPRCasFinder
AACTGATAGTTCAATCTTTATGCTGCTGATTCGGCCAGCGGCCATTGTCGCCTAAGGGTCAAGACCATAGGCCCCAAACCGATAGTTCAATCTTTATGC

>NZ_CP022426|13|13|4710371-4710469|CRISPRCasFinder
AACTGATAGTTCAATCTTTATGC	TGCTGATTCGGCCAGCGGCCATTGTCGCCTAAGGGTCAAGACCATAGGCCCCA
AACCGATAGTTCAATCTTTATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022426.1\|WP_005318344.1\|4715236_4715764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022426.1\|WP_011898246.1\|4720104_4721190_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP022426.1\|WP_005318334.1\|4717971_4718877_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_CP022426.1\|WP_005318332.1\|4718873_4720028_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP022426.1\|WP_021138452.1\|4697195_4698638_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP022426.1\|WP_021138460.1\|4708852_4709338_+\|ribonuclease-E-activity-regulator-RraA	unknown	unknown	gnl\|CDD\|236487
NZ_CP022426.1\|WP_021138466.1\|4714648_4715113_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|183276
NZ_CP022426.1\|WP_021138458.1\|4705356_4706781_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP022426.1\|WP_021138463.1\|4710754_4712182_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NZ_CP022426.1\|WP_021138461.1\|4709611_4710286_-\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	unknown	unknown	gnl\|CDD\|183041
NZ_CP022426.1\|WP_005318337.1\|4717055_4717898_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP022426.1\|WP_021138457.1\|4703797_4705204_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_CP022426.1\|WP_021138467.1\|4716305_4717010_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP022426.1\|WP_021138454.1\|4700057_4702604_+\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NZ_CP022426.1\|WP_021138455.1\|4702603_4702921_+\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|181921
NZ_CP022426.1\|WP_021138459.1\|4706852_4708706_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP022426.1\|WP_021138453.1\|4698836_4699757_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176149
NZ_CP022426.1\|WP_021138464.1\|4712286_4712589_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP022426.1\|WP_021138456.1\|4702972_4703785_+\|nitrite-transporter-NirC	unknown	unknown	gnl\|CDD\|183200
NZ_CP022426.1\|WP_021138465.1\|4712691_4714515_-\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|182933

Protein	Function_ID	Function_description	E-value
NZ_CP022426.1\|WP_011898246.1\|4720104_4721190_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP022426.1\|WP_005318334.1\|4717971_4718877_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	4.78085e-152
NZ_CP022426.1\|WP_005318332.1\|4718873_4720028_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP022426.1\|WP_021138452.1\|4697195_4698638_-\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.46327e-41
NZ_CP022426.1\|WP_021138460.1\|4708852_4709338_+\|ribonuclease-E-activity-regulator-RraA	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	7.18759e-100
NZ_CP022426.1\|WP_021138466.1\|4714648_4715113_+\|thioesterase-family-protein	gnl\|CDD\|183276	PRK11688, PRK11688, thioesterase family protein.	3.17022e-82
NZ_CP022426.1\|WP_021138458.1\|4705356_4706781_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	6.01503e-149
NZ_CP022426.1\|WP_021138463.1\|4710754_4712182_-\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0
NZ_CP022426.1\|WP_021138461.1\|4709611_4710286_-\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	gnl\|CDD\|183041	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter.	2.68562e-131
NZ_CP022426.1\|WP_005318337.1\|4717055_4717898_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	3.45474e-117
NZ_CP022426.1\|WP_021138457.1\|4703797_4705204_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_CP022426.1\|WP_021138467.1\|4716305_4717010_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	6.80748e-69
NZ_CP022426.1\|WP_021138454.1\|4700057_4702604_+\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NZ_CP022426.1\|WP_021138455.1\|4702603_4702921_+\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|181921	PRK09511, nirD, nitrite reductase small subunit NirD.	1.80966e-67
NZ_CP022426.1\|WP_021138459.1\|4706852_4708706_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.27722e-70
NZ_CP022426.1\|WP_021138453.1\|4698836_4699757_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.34869e-86
NZ_CP022426.1\|WP_021138464.1\|4712286_4712589_+\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.36659e-25
NZ_CP022426.1\|WP_021138456.1\|4702972_4703785_+\|nitrite-transporter-NirC	gnl\|CDD\|183200	PRK11562, PRK11562, nitrite transporter NirC; Provisional.	6.895e-173
NZ_CP022426.1\|WP_021138465.1\|4712691_4714515_-\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|182933	PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.	0

>NZ_CP022426.1|WP_021138461.1|4709611_4710286_-|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter
MNLTPAQHRTALVRLSLFHILIIASSNYLVQLPITIFGFHTTWGAFSFPFIFLATDLTVRIFGAGLARKIIQTVMLPALAVSYALSVLFFEGSYQGMGNLAEFNLFVARIALASFMAYLVGQFMDVVVFNRLRLLRAWWVAPAASTLFGNLVDTIAFFSIAFWRSTDPFMAEHWVEIATVDYVFKLLISLGLFVPLYGVLLRYLSRKLVGEAGLAGLQTATRQA
>NZ_CP022426.1|WP_021138460.1|4708852_4709338_+|ribonuclease-E-activity-regulator-RraA
MEYNTSELCDIYQDMVDVLEPMLCSFGGRASFGGVITTVKCFESNGLIRELVKENGVGRVLLIDGGGSMRRALIDSEIATTAAENEWEGIVCYGCVREVDILEDLDIGIQALAAIPVGADSKDVGETDLPVNFGGVTFLPDDHLYADTTGVILSPEALDIE
>NZ_CP022426.1|WP_021138459.1|4706852_4708706_-|methyl-accepting-chemotaxis-protein
MLIRHKLILNTVLVAIAMLVLSGLFLYSSQVSRHLTEAQRNVDALEIAMLNLRRAEKDFLIRKDLAFVDRFNQGLADFHKLDQTLSADDNLRAVNGELARLDQQMGAYGKAFNDLVAQQQTIGLGPEDGLYGRLRAAVHQVEEGLKQLDQQGLTITMLQLRRAEKDFMLRSDIQYLERFQTLHKSFQENLATLPEADRGKLEQASLQYRQDFVALVEGMQVLGLKEDEGLRNQMRDLVHQTEQGFTALGQHIADELVRQTSRLNSLMLVCGGVIIVLIGIMSILLGRSIDRSISRVNDTVNRIRQDNDLRLKIELQGADEMAQLAGNLDVMLGGFRHLIGDVKQSVHTLTEAADHLSSNVRRTSEGASRQLQETDMVATASTEMGSTIEEIARNTEQAANNAQATNNKAMEGRTAVENTVRQIRSLAGNLESSSQEVAQLQKESETIGSVLDVIRGIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRSLAIRTQKSTQEIAGIISSLQKQTGSIVGMMATCREQGNSSSEQASTAGELLGQITQDVTHIMDMSTQIAAAIEQQSLVANEVNRNVNNIRDIAQESSLMAEENAKSSQGLTEQAKLLNQAVAKYRV
>NZ_CP022426.1|WP_021138458.1|4705356_4706781_+|magnesium-transporter
MSLPVKNSAKQREQDRSRILTLLLADDALTDSLLDPQTVQDAELRDQTSELTRLVNSLPAADIADALESLPPDERHVLWQQVDPEKHGQVLVEASETVWDSLISGMSDKALLHALRTLDIDDQIYLGQYLPRNLMGRLLTSMAPPQRDQVREVIRYGKHTVGAMMDFELITVRAEVSLATVQRYLRLRGKIPVNTDKLFVIDRRNRLQGELPLTTVLLHKPATLVGEVMERDPVTFDPEDNDEAAARTFERDDLVSAAVIDGRGKLMGRLTVAEVVDLVYEESDTDLRRMGGISEDEDVFAPVNKAVKTRWAWLAINLCTAFVASRVIGLFEHTISQLVALAALMPIVAGIGGNTGNQTITMIVRALALQHIQAGNVSFLLWRELGVALINGLVWGGTMGLATYALYQDAALGAVMTLAMMINLLVAALMGVIIPMTMSRLGRDPAIGASVMITAITDTGGFFIFLGLATLFLI
>NZ_CP022426.1|WP_021138457.1|4703797_4705204_+|uroporphyrinogen-III-C-methyltransferase
MDYLPIFCRLDNKPVLLVGGGDVAERKARLLLDAGAQLTVVAPELDPELAALAASGTIEWLAGEFEPAQLAGKWLVVAATDRREVNALVYQSANQARIFANVVDDPKRSSFIMPSIIDRSPLMVAISSGGKAPVLARLLREKLEALLPQHLGAVAAFAGGLRDRVKARFASMGERRQFWERLLGADRLGQALARGDKASANQLADALFAEDAAAKGEVILVGAGPGDPGLLTLHALRQMQQADVVVHDRLVSDEVMALVRRDAKRIFVGKQAGNHCVPQEGINQLLLEEASKGQRVVRLKGGDPFIFGRGGEELETLVGSGIGFQVVPGITAASGCAAYAGIPLTHRDHAQSVRFVTAHGKGGTQDLDWPLLARDQQTLVFYMGLSSCATIREQLMAHGKGGATPVALIERGTQPSQRVIRGTLDQLPELAVGVESPALIMVGSVVTLADQLAWFGQTGAPSQVAALA
>NZ_CP022426.1|WP_021138456.1|4702972_4703785_+|nitrite-transporter-NirC
MYTETINKCAANAARINRFERSDKLGFWLSSAMAGAYVGLGIILIFTLGNLVDPSIRPLVMGATFGIALTLVVIAGSELFTGHTMFLTFGVKSGKITMGDLLRILPQTWAGNLLGSIAVALIYSYGGSLLPDAGSLAHKVALAKTQAPALTLFMKGVLCNWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSVANMTLFALSWFGAHSDAYTLGGIGHNLLWVTLGNTVSGALFMGLGYWYATPKADRPVAVSDATTTASQTQTA
>NZ_CP022426.1|WP_021138455.1|4702603_4702921_+|nitrite-reductase-small-subunit-NirD
MKLACQLNDIFPGTGVCALIEGRQIALFRPNDAAEVFAIDNRDPFFAANVLSRGIVGEHEGELWVASPLKKQHFRLRDGHCLENAAMSVQSYPVEVRDQQVWVAV
>NZ_CP022426.1|WP_021138454.1|4700057_4702604_+|nitrite-reductase-large-subunit
MSKVRLAVIGNGMVGHRFIEELIERSDPDRFEITVFGAEPRPAYDRVHLSSYFSHHTSEDLSLVKPGFYEKHGIRLLLGEAVKKIDRAAREVHSNKGTVVGYDKLVLATGSYPWVPPIAGSQHHECFVYRTIEDLKAIRSAAKSGKSGVVIGGGLLGLEAAGALKALGLETHVVEFAPVLMAEQLDGQGGQLLRRKIESMGVQVHTSKSTSEILMHGGRDAQHRLAFADGSQLEVDVVVFSTGIRPQDTLGRYCELAIAERGGVAVDDHCLTSDPDIYAIGECAAWQGRFFGLVAPGYKMAQITVDHLLGGDSRFEGADMSAKLKLLGVSVGSIGDAHGRTPGSHSYVFQDDQAGVYKRIVVSEDNSRLLGAVLVGDVDDYGNLLQLMLNAMPLPAHPDTLILPAYAGAKPTLGVDALPSTAQICSCFDVSKGDIAQAVAEGHTTLAAIKQHTKAGTGCGGCVPLISQVLNAELVKQGIEVNNHLCDHFPHSRQELFHLVKVEGIKSFDELLAKHGHGYGCEVCKPTVGSILASCWNGYVLSPLNTQLQDTNDIFLGNMQKDGSYSVIPRMAGGEVTPEGLLAVAEVARDYKLYTKITGAQRIGLFGAQKDDLPAIWRKLLAAGFETGQAYAKALRMAKTCVGSTWCRFGVQDSVGLGVFLENRYKGIRTPHKMKFGVSGCTRECAEAQGKDVGIIATDAGWNLYVGGNGGMKPRHADLLASDLDRETLIRLIDRFMMFYVTSADKLQRTSVWLGNLEGGVDYLREVIVDDKLGLNATLEHDIQVLIDSYECEWSRTLNEEEQLKRFSHFINSGKRDPDVQFVTERDQHRPATPAERIPVYQIEVEAK
>NZ_CP022426.1|WP_021138453.1|4698836_4699757_+|LysR-family-transcriptional-regulator
MSTPDFNLLITLDALLDEGSVAGAARRLRLSPSAMSRALARLRETTGDPLLVRAGRGLVPTPRALALRERVSQLVQEAEAVLRPQQEIDPAHLVRTFRLRSSDGFVESVGAALLARLAAEAPGVRLHFMAKPDKESQPLRGGELDFETGVIGTNTAPELHTQALFQDRFVAVVRPGHPLCEGPLTAVRYAAARHVLVSRRGQEHGPVDEALAALKLERAIATLVPGFATALALVRGSDLVATVPALHCASLHADLVTLPLPFPLPGITLALLWHPRLDADPAHRWLRTLIRETCARAPYQAIPKER
>NZ_CP022426.1|WP_021138452.1|4697195_4698638_-|MFS-transporter
MSYPSIIPSPWVRRAGLLALGLATLLPMLAGSMANMALPALGQAFAAPFASLQWVLVAYLLGITCLTLVAGRLGDRFGRCRLLLGGVGLFALASLLCALAPTIGWLIAARVLQGIGAACMLSLALAMVGQLVPAAQRGRGMGLLGTLSACGTALGPSFGGLLIGGFGWQAPFLLLVPISLLALGAGMVGLPPEGALPQKEKVTLASLSMLVVALLCYGLALTSGGAPALGWWAGALLGTALFVRRERRARFPLLPLALLADSRLKGGLLASALVASVMVLTLLIGPFYLHCVFELDMATVGLMISGGPLLAALTGMPAGWLVDRFGSRRVARLGLMAMMIALLGLATLSAGYGPLGYLLPILLLTAGYALFQTANNSAVVGAATEQARGSVAGLLTLSRNLGQLTGAAGLGGLFATLVGTPNLATAMPADLVFGMQISFALGGLLIGAAIWLTGRGHSGAPVETIQEGVENEDASAREAS
>NZ_CP022426.1|WP_021138463.1|4710754_4712182_-|YdiU-family-protein
MKLINTFATELPWACEPVVPQPLREPRLLHLNRGLLAELGLDGVSDTDWLACCGLGQPLPGMQPVAQVYAGHQFGGYSPRLGDGRALLLGELLTTDGQRWDLHLKGAGKTPFSRFGDGRAVLRSSIREYLASEALHALGIPTTRALVLVGSKEPVYREQEETGATVLRTAPSHLRFGHIEYFAWSGQGEKIPVLIDYLLRYHFPELENGAELFAEVVRRTARLIAKWQAAGFCHGVMNTDNMSLLGLTLDYGPYGFIDAYVPDFVCNHSDPDGRYALDQQPAVGYWNLQKLAQALAGHVDGDVLATSLAQYEHQLMLHYSELMRAKLGLTQWEEEDPALFRQLFQLLASQGVDYHLFLRRLGEVTGKGEWPASLLALLPDPDLWQGWLELYRVRLTREGCEDAVRKAQMDAINPKYVLRNVLAQQAIDAAEGGDMTPFERLLAALQQPYDEQPEYADLATPVPQWYCGGELSCSS
>NZ_CP022426.1|WP_021138464.1|4712286_4712589_+|c-type-cytochrome
MQRWVYALPLLALAWGHLAKAADIEAGKAKAAVCAACHGVEGKALIPNYPHLAGQNHAYLVKQLKAFKDGSRQEPLMVPFMAPLTEADMENLAAFYASLK
>NZ_CP022426.1|WP_021138465.1|4712691_4714515_-|ATP-dependent-DNA-helicase-RecQ
MTVIAETLPDTPLALLQAVFGYQQFRPGQLEIIEQIVAGRDAMVLKPTGGGKSLCFQIPALLRPGLGVVVSPLISLMKDQVDSLRANGVAAIYINSALSREEMIQNFAAMRRGEIKLLYVSPERLLQHEFMDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSDMLHRLELNDPFIHTASFDRPNIRYSLVEKFKAAEQLLRYVQSQKGNCGIVYCSSRNRVEEVAERLSRHGSKAAPYHAGLPLAQRQQTQDDFLKDDIEIVVATVAFGMGIDKPNVRFVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQYKLNVMAAFAEAQTCRRQVLLNYFGEYNDKPCGNCDICLDPPKSYDGTEDAQKALSCVWRVGQNFGVGYVVEVLRGSLNQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNITRNLVLQLTEASRPVLRGEMKLELAVPRLQPISSRKEKRNGLLDNANYDKRLFKELRGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEAEMLAINGVGHRKLERFGEAFMDLIIDYCRR
>NZ_CP022426.1|WP_021138466.1|4714648_4715113_+|thioesterase-family-protein
MKHMLKKMALSGIANLFAERMPFNKLIGMQVTHYDFEKVELRIKMDDKLIGNPFHNILHGGVTASLLDVAGGMIVAASCIDELEDFSPNYLKERFSRLGTIDLRVDYLRPGRGNEFIATAHIIRAGSKVAVARMELHNEEGTHIAFGTGTYLVG
>NZ_CP022426.1|WP_005318344.1|4715236_4715764_+|hypothetical-protein
MSAKLATKPSRALLTQLESMLDEVQTPECRHWLEQELEGYSLCSHLPWYRIVACRQRGHFLDLKTGKYLTCHINSQTLSQRDLAQIQFIYAREPAAHYLLQRNSGIEPWPEQLLEDYQEQLIPGHLCLQAWHEPVSSLRSQLMEGIEHFISEYPKHAALQPQHSFKALRHQHWHI
>NZ_CP022426.1|WP_021138467.1|4716305_4717010_-|MOSC-domain-containing-protein
MRISIFSGQGTELVPGLVSAINKQATTIPLWCGFGGLGGDEQSDPRHHGGPDRALHYYPADHYPWWHNWQTAMGLAAPRTPWQPAAFGENLSGLGLTEEQACIGDVYRLGEALIQISQPRSPCFKLNLRFGYPQLSQVMQLSGRCGWLLRVLEEGTVAPQETMELVDRPYPALTVKRTADILFNQVRNEADLLLLLENPALSPNWRQHAANWLEHGVVADWQRRLLGPAEFQFS
>NZ_CP022426.1|WP_005318337.1|4717055_4717898_-|ABC-transporter-permease-subunit
MKRFGFAKMMLWLGLLFIYLPMVIMVIYSFNSSKLVTVWGGWSLKWYFGLLDNKQLIGSVLRSLEIALYTAVAAVALGTVAAFVLTRIPHFRGRTLFGGMVTAPLVMPEVITGLSLLLLFVAMAQLVGWPAERGMLTIWIAHTTFCTAYVAIVVSARLRELDLSIEEAAMDLGAKPWKVFFLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGATTLPMEVFSAVRLGVKPEINAVASLILLSVSLFTFSSWYLMARAEKRRRAEIAMTTQMQAVA
>NZ_CP022426.1|WP_005318334.1|4717971_4718877_-|ABC-transporter-permease-subunit
MKALRRLKRLGGRQLVIGIPFFWLFLFFLLPFIIVVKISFAEADVAIPPYTDVVSWADNQLTILLNLGNYLLLQEDELYIAAYIGSLKIAFISTVLCLLIGYPMAYTIARANKETQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSLLMGIGLIDEPLQILNTNLAVYIGIVYSYLPFMVLPLYANLVKHDQSLLEAASDLGARNLTRFWRITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAVLIVPIILFNRNQAKELEGKV
>NZ_CP022426.1|WP_005318332.1|4718873_4720028_-|polyamine-ABC-transporter-ATP-binding-protein
MAIASSAYKKALEGNQQRKEVLVKIDRVSKQFDETLAVDNVSLNIHKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRLFLDGVDITDMPPYERPINMMFQSYALFPHMTVAQNIAFGLKQDGLPKAEVDARVEEMLKLVQMAQYARRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGLLVEDEQDHATIACADLEQPIYVGHGISSRAENKKVTYALRPEKLLMSTQKPTEIEHPDFNWTKGEVYDIAYLGGHSVYHIQLPSGKIVQAFIANAERHGKRPTWDDQVFLYWEDDSGVVLQS
>NZ_CP022426.1|WP_011898246.1|4720104_4721190_-|polyamine-ABC-transporter-substrate-binding-protein
MHTTKTVTMTLALGLASLAHAAPVVHFYNWSDYIGETTLSDFQQATGIKTVYDVFDSNETLEGKLLTGRTGYDLVVPSNNFLAKQITAGAFQKLDPALLPNLVNLDPVLLKQLDKVDPGHQYAVPYLWGTNGIGYNVDKIKDVLGVDKIDSWAVIFEPENMQKLSRCGVAFLDSADEMIPAVLNYLGLDPNSHKPEDIKRAEEQLLKVRPYVTYFHSSKYIGDLANGDICVAAGFSGDILQAAARADEAGKGINIAYSIPKEGGNLWFDMMAIPADATNVKEAHALINYVLQPEVIAKVSNYVGYANPNAKAGEYMDESVRDDESVYPPQAVLERLYVQQAHPRAVQRLITRSWTKIKSGT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022426_12	12.1\|3950069\|30\|NZ_CP022426\|CRISPRCasFinder	3950069-3950098	30	NZ_CP034811	Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence	9461-9490	8	0.733

1. spacer 12.1|3950069|30|NZ_CP022426|CRISPRCasFinder matches to NZ_CP034811 (Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gcatgcacatctggcgcatcacccccttat	CRISPR spacer
agctgaacatctggcgcatcaccgccctga	Protospacer
.  ** ***************** **.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

723058 : 782060

Acidithiobacillus_phage(17.39%)

integrase,transposase,tRNA

attL 744843:744858|attR 794315:794330

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021139193.1\|723058_723970_-\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_005318829.1\|724083_724353_+	FAD assembly factor SdhE	NA	NA	NA	NA
WP_021139194.1\|724359_724749_+	hypothetical protein	NA	NA	NA	NA
WP_021139195.1\|724944_726552_-	L-aspartate oxidase	NA	NA	NA	NA
WP_021139196.1\|726734_727316_+	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	3.0e-07	27.0
WP_034523729.1\|727337_727931_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA
WP_021139198.1\|727952_728933_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_005318845.1\|729026_729488_+	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_005318848.1\|729606_731400_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.8e-24	27.4
WP_005318850.1\|731403_732327_+	signal peptidase I	NA	NA	NA	NA
WP_005318852.1\|732327_732999_+	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	2.6e-18	33.2
WP_021139199.1\|733057_733957_+	GTPase Era	NA	NA	NA	NA
WP_005318856.1\|733957_734665_+	DNA repair protein RecO	NA	NA	NA	NA
WP_021139200.1\|734738_735476_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_034523730.1\|735538_736360_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_005318863.1\|736459_736939_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	7.2e-31	44.9
WP_021139202.1\|737069_739781_-	two-component sensor histidine kinase BarA	A0A1V0SGX0	Hokovirus	7.7e-53	30.0
WP_021139203.1\|739934_741257_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	2.7e-35	27.9
WP_021139204.1\|741496_743707_+	GTP diphosphokinase	NA	NA	NA	NA
WP_021139205.1\|743803_744601_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_005318871.1\|744741_746379_+	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.3e-152	51.0
744843:744858	attL	NA	NA	NA	NA
WP_005318874.1\|746468_747770_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.9e-134	59.6
WP_005318876.1\|747949_748267_+	cell division protein FtsB	NA	NA	NA	NA
WP_021139206.1\|748259_748949_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_005318882.1\|749082_749559_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_021139208.1\|749558_750617_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_021139209.1\|750597_751344_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.7e-66	52.0
WP_005318888.1\|751348_751966_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.0e-34	46.4
WP_021139210.1\|751962_752544_+	DedA family protein	NA	NA	NA	NA
WP_021139211.1\|752553_753600_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0A7NU10	Lactobacillus_phage	1.0e-13	41.3
WP_017411567.1\|753647_754631_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	9.9e-35	34.1
WP_021139212.1\|754716_755730_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.9e-108	58.0
WP_005309452.1\|755909_756125_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_021139213.1\|756140_756584_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	7.6e-27	47.9
WP_021139214.1\|756672_758460_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.6e-73	41.1
WP_080937890.1\|758673_760533_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6
WP_145958002.1\|761309_761579_-	hypothetical protein	NA	NA	NA	NA
WP_099368897.1\|761851_762868_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_039272517.1\|763126_764668_+\|transposase	IS21-like element ISAs29 family transposase	K4I413	Acidithiobacillus_phage	3.4e-130	47.6
WP_039272515.1\|764682_765438_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-58	50.6
WP_034524582.1\|766506_767808_-	outer membrane channel protein TolC	NA	NA	NA	NA
WP_099368881.1\|769578_770595_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	2.2e-186	99.4
WP_046400746.1\|771827_773393_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
WP_043851824.1\|773415_774171_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.0
WP_042650619.1\|776291_777125_-	thymidylate synthase	E5DV96	Deep-sea_thermophilic_phage	3.2e-95	61.0
WP_021141269.1\|777121_777604_-	hypothetical protein	NA	NA	NA	NA
WP_021141270.1\|777600_779616_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_162516023.1\|779612_782060_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
794315:794330	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1299937 : 1336064

Enterobacteria_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368915.1\|1299937_1301266_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_021141201.1\|1301384_1302557_-	prephenate dehydratase	NA	NA	NA	NA
WP_021141200.1\|1302888_1303485_+	HAD family phosphatase	NA	NA	NA	NA
WP_021141199.1\|1303516_1303795_+	hypothetical protein	NA	NA	NA	NA
WP_034524561.1\|1303839_1304712_+	hypothetical protein	NA	NA	NA	NA
WP_021141197.1\|1304817_1305366_+	DUF3157 family protein	NA	NA	NA	NA
WP_021141196.1\|1305555_1306197_+	hypothetical protein	NA	NA	NA	NA
WP_021141195.1\|1306371_1307316_+	DUF1722 domain-containing protein	NA	NA	NA	NA
WP_021140938.1\|1307687_1308587_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	7.0e-19	31.5
WP_021140939.1\|1308583_1310005_+	deoxyribodipyrimidine photo-lyase	A0A1V0SCV6	Indivirus	1.4e-50	29.6
WP_021140940.1\|1310006_1310435_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_021140941.1\|1310431_1311166_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_021140942.1\|1311162_1312422_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_021140943.1\|1312418_1313171_+	DUF1365 domain-containing protein	NA	NA	NA	NA
WP_021140944.1\|1313292_1314549_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_021140945.1\|1314551_1315031_+	DUF2878 domain-containing protein	NA	NA	NA	NA
WP_021140946.1\|1315027_1315246_+	TIGR02450 family Trp-rich protein	NA	NA	NA	NA
WP_034524398.1\|1315202_1315745_+	hypothetical protein	NA	NA	NA	NA
WP_034524400.1\|1315744_1316302_+	DUF3833 domain-containing protein	NA	NA	NA	NA
WP_021140949.1\|1316433_1316901_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	5.6e-20	36.0
WP_021140950.1\|1317119_1318769_+	hydroxylamine reductase	NA	NA	NA	NA
WP_021140951.1\|1318901_1319921_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_021140952.1\|1320004_1321030_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.2e-83	47.1
WP_021140953.1\|1321166_1321916_-	DsbA family protein	NA	NA	NA	NA
WP_021140954.1\|1322476_1322806_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_099368918.1\|1323322_1324526_+\|transposase	IS3-like element ISAs17 family transposase	Q9ZXG3	Shigella_phage	9.1e-115	70.8
WP_046400752.1\|1324618_1326787_+	regulatory protein NosR	NA	NA	NA	NA
WP_021141192.1\|1326851_1328759_+	nitrous-oxide reductase	NA	NA	NA	NA
WP_046400751.1\|1328818_1330138_+	nitrous oxide reductase family maturation protein NosD	NA	NA	NA	NA
WP_099368919.1\|1330134_1331013_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-29	35.8
WP_099368897.1\|1331121_1332138_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_139723412.1\|1332182_1332755_+	hypothetical protein	NA	NA	NA	NA
WP_011191341.1\|1333066_1334341_-\|transposase	IS4-like element ISApu2 family transposase	NA	NA	NA	NA
WP_010674210.1\|1334450_1336064_+\|transposase	IS1634-like element ISAs25 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2076003 : 2245992

113

Acidithiobacillus_phage(21.43%)

integrase,transposase

attL 2082566:2082585|attR 2156399:2156418

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368944.1\|2076003_2077029_+\|transposase	IS110-like element ISAs24 family transposase	NA	NA	NA	NA
WP_021140604.1\|2077519_2078122_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	7.2e-20	35.3
WP_021140605.1\|2078333_2079251_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_021140606.1\|2079431_2081210_+	M3 family oligoendopeptidase	A0A1X9I5X5	Streptococcus_phage	1.1e-12	24.0
WP_021140607.1\|2081364_2083173_+	M3 family oligoendopeptidase	A0A1X9I5X5	Streptococcus_phage	4.1e-10	23.7
2082566:2082585	attL	NA	NA	NA	NA
WP_005310449.1\|2083569_2084109_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_021140608.1\|2084187_2085480_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005310453.1\|2085688_2086006_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_021140609.1\|2086174_2086933_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021140610.1\|2087124_2088138_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_021140611.1\|2088207_2090481_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_021140612.1\|2090733_2091822_+	hypothetical protein	NA	NA	NA	NA
WP_021140613.1\|2091913_2093266_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_017411372.1\|2093688_2095017_-	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_021140614.1\|2095287_2095920_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_021140615.1\|2096275_2096611_-	DUF3802 family protein	NA	NA	NA	NA
WP_021140616.1\|2096666_2097143_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021140617.1\|2097151_2097508_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_021140618.1\|2097614_2098406_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_080937938.1\|2098715_2099699_-	AAA family ATPase	NA	NA	NA	NA
WP_004576012.1\|2099705_2101124_+\|transposase	IS66-like element ISAs21 family transposase	NA	NA	NA	NA
WP_034524137.1\|2102459_2102948_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	2.8e-14	38.3
WP_034524138.1\|2103467_2104421_+	hypothetical protein	NA	NA	NA	NA
WP_021140302.1\|2104615_2105683_-	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_021140303.1\|2105679_2108124_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_021140304.1\|2108151_2108832_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-29	35.9
WP_005310491.1\|2109029_2109497_+	DUF4357 domain-containing protein	NA	NA	NA	NA
WP_021140305.1\|2109606_2111031_+	Na+/H+ antiporter NhaD	NA	NA	NA	NA
WP_017412350.1\|2111122_2112325_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.8e-22	25.1
WP_021140307.1\|2114206_2115481_-	hypothetical protein	NA	NA	NA	NA
WP_021140308.1\|2115587_2116163_-	hypothetical protein	NA	NA	NA	NA
WP_021140309.1\|2116399_2117824_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_021140310.1\|2117910_2118750_-	hypothetical protein	NA	NA	NA	NA
WP_034524141.1\|2118749_2121755_-	hypothetical protein	NA	NA	NA	NA
WP_021140312.1\|2121759_2122209_-	hypothetical protein	NA	NA	NA	NA
WP_021140313.1\|2122330_2122816_-	hypothetical protein	NA	NA	NA	NA
WP_021140314.1\|2123047_2123515_-	hypothetical protein	NA	NA	NA	NA
WP_021140315.1\|2124446_2126183_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	3.4e-30	24.7
WP_021140316.1\|2127121_2127640_+	type VI secretion system effector Hcp1	NA	NA	NA	NA
WP_021140317.1\|2127945_2129988_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.0e-34	27.6
WP_021140318.1\|2129984_2130779_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_021140319.1\|2130778_2132779_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_166507332.1\|2132778_2133510_+	DUF2931 family protein	Q6QLL3	Human_immunodeficiency_virus	6.1e-13	97.3
WP_099368897.1\|2133547_2134564_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_021140693.1\|2135565_2136264_+	DUF2931 family protein	NA	NA	NA	NA
WP_021140692.1\|2136358_2137060_+	DUF2931 family protein	NA	NA	NA	NA
WP_034524298.1\|2137317_2138676_+	sel1 repeat family protein	NA	NA	NA	NA
WP_021140688.1\|2139830_2141141_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_005329233.1\|2141140_2141395_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010674978.1\|2141896_2142145_+	hypothetical protein	NA	NA	NA	NA
WP_010674977.1\|2142565_2142817_-	plasmid stabilization protein	NA	NA	NA	NA
WP_024941318.1\|2142895_2144254_-	cell division protein Fic	NA	NA	NA	NA
WP_021140686.1\|2144457_2144910_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_021140685.1\|2145241_2145820_+	hypothetical protein	NA	NA	NA	NA
WP_099369130.1\|2145842_2148191_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_005327392.1\|2148175_2151484_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010674971.1\|2151974_2152175_-	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.5e-06	36.9
WP_010674970.1\|2152300_2152516_+	hypothetical protein	NA	NA	NA	NA
WP_010674969.1\|2152531_2153776_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	4.9e-39	29.1
WP_043851824.1\|2154140_2154896_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.0
WP_099368872.1\|2154918_2156484_-\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
2156399:2156418	attR	NA	NA	NA	NA
WP_021141233.1\|2157679_2158084_-\|transposase	IS200/IS605-like element ISAs26 family transposase	A0A1S5RHE3	Helicobacter_phage	8.8e-30	54.8
WP_021141234.1\|2158141_2159368_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	7.7e-154	78.6
WP_010674966.1\|2159551_2160469_-	WYL domain-containing protein	NA	NA	NA	NA
WP_010674965.1\|2160570_2160717_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_099368947.1\|2161077_2162164_+\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_099368948.1\|2162383_2163400_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	6.4e-186	99.1
WP_099368949.1\|2163579_2165688_+	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_021140678.1\|2168790_2173740_+	class I SAM-dependent DNA methyltransferase	A0A1B1IUC6	uncultured_Mediterranean_phage	8.3e-13	23.5
WP_021140677.1\|2173739_2180090_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.3e-60	22.7
WP_021140676.1\|2180086_2182225_+	ATP-dependent helicase	G3MA40	Bacillus_virus	2.5e-06	38.6
WP_019706001.1\|2183649_2184597_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_005342491.1\|2185177_2186128_+\|transposase	IS1595-like element ISKpn3 family transposase	NA	NA	NA	NA
WP_099369131.1\|2187650_2187899_-	amidohydrolase family protein	NA	NA	NA	NA
WP_021141311.1\|2188159_2189296_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_145958005.1\|2189191_2190967_-	amidohydrolase family protein	NA	NA	NA	NA
WP_099368952.1\|2191713_2193123_-	APC family permease	NA	NA	NA	NA
WP_046400745.1\|2193239_2194157_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021140984.1\|2194184_2194418_-	hypothetical protein	NA	NA	NA	NA
WP_021140988.1\|2196082_2197339_+	hypothetical protein	NA	NA	NA	NA
WP_005330555.1\|2197335_2197944_+	hypothetical protein	NA	NA	NA	NA
WP_034524431.1\|2197943_2200703_+	hypothetical protein	NA	NA	NA	NA
WP_021140990.1\|2200699_2201572_+	hypothetical protein	NA	NA	NA	NA
WP_021140991.1\|2201727_2202672_+	hypothetical protein	NA	NA	NA	NA
WP_005330548.1\|2202981_2204805_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_021141163.1\|2207252_2208665_-	pyruvate kinase PykF	NA	NA	NA	NA
WP_021141162.1\|2208685_2209834_-	galactokinase	NA	NA	NA	NA
WP_021141161.1\|2209830_2210889_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_021141160.1\|2210949_2211963_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.0e-82	46.2
WP_021141159.1\|2212164_2213172_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_102140864.1\|2214373_2215458_-\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_099368872.1\|2215622_2217188_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
WP_043851824.1\|2217210_2217966_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.0
WP_021141280.1\|2218497_2219496_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_034524610.1\|2219569_2220205_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_001809438.1\|2220723_2221755_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_099368872.1\|2222674_2224240_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
WP_099368954.1\|2224262_2224964_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	6.2e-47	44.4
WP_099368955.1\|2225029_2226448_+\|transposase	IS66-like element ISUnCu16 family transposase	NA	NA	NA	NA
WP_021141125.1\|2227010_2228660_-	DNA repair ATPase	NA	NA	NA	NA
WP_017413053.1\|2228860_2229823_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_021141126.1\|2230155_2230806_+	DedA family protein	NA	NA	NA	NA
WP_017413054.1\|2230920_2231454_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_005314664.1\|2231728_2233024_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-49	32.0
WP_021141127.1\|2233163_2233808_+	DUF2913 family protein	NA	NA	NA	NA
WP_034524516.1\|2234187_2235228_+	peptidase M35	NA	NA	NA	NA
WP_034524490.1\|2235277_2235712_+	hypothetical protein	NA	NA	NA	NA
WP_034524488.1\|2235708_2236704_-	DUF4243 domain-containing protein	NA	NA	NA	NA
WP_021141089.1\|2236764_2237244_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_034524486.1\|2237473_2237884_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_021141086.1\|2237977_2239393_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_021141085.1\|2239405_2243863_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_099368918.1\|2244787_2245992_-\|transposase	IS3-like element ISAs17 family transposase	Q9ZXG3	Shigella_phage	9.1e-115	70.8

DBSCAN-SWA_4

2271508 : 2326207

Escherichia_phage(18.18%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368881.1\|2271508_2272525_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	2.2e-186	99.4
WP_021140879.1\|2272714_2273839_+	4-phosphoerythronate dehydrogenase	NA	NA	NA	NA
WP_005310564.1\|2274006_2275023_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_034524375.1\|2275301_2277443_+	pilus assembly protein FimV	NA	NA	NA	NA
WP_021140877.1\|2277609_2278419_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_005310570.1\|2278538_2279402_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_034524374.1\|2279404_2280664_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_034524373.1\|2280864_2281635_+	cell division protein DedD	NA	NA	NA	NA
WP_005310577.1\|2281692_2282034_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_021140874.1\|2282060_2284214_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_011898838.1\|2284378_2285035_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	53.1
WP_021140873.1\|2285504_2286173_-	UPF0149 family protein	H9NBT7	Sphingomonas_phage	5.6e-05	46.7
WP_021140872.1\|2286172_2289205_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.4e-23	25.0
WP_099368897.1\|2289486_2290503_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_034524347.1\|2290535_2291861_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_021140790.1\|2291880_2294274_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	2.8e-22	28.2
WP_021140791.1\|2294643_2295051_-	hypothetical protein	NA	NA	NA	NA
WP_021140792.1\|2295053_2295368_-	hypothetical protein	NA	NA	NA	NA
WP_021140793.1\|2295461_2295809_-	hypothetical protein	NA	NA	NA	NA
WP_021140794.1\|2295810_2296353_-	hypothetical protein	NA	NA	NA	NA
WP_021140795.1\|2296432_2296795_-	hypothetical protein	NA	NA	NA	NA
WP_021140796.1\|2296791_2297007_-	hypothetical protein	NA	NA	NA	NA
WP_021140797.1\|2297006_2297513_-	hypothetical protein	NA	NA	NA	NA
WP_034524350.1\|2297629_2297878_-	hypothetical protein	NA	NA	NA	NA
WP_021140799.1\|2297992_2298184_-	hypothetical protein	NA	NA	NA	NA
WP_021140800.1\|2298180_2298678_-	DNA repair protein RadC	NA	NA	NA	NA
WP_021140801.1\|2298768_2299071_-	hypothetical protein	NA	NA	NA	NA
WP_021140802.1\|2299080_2299506_-	DUF2787 family protein	NA	NA	NA	NA
WP_034524345.1\|2299525_2300104_-	hypothetical protein	NA	NA	NA	NA
WP_021140804.1\|2300192_2300633_-	hypothetical protein	NA	NA	NA	NA
WP_021140805.1\|2300712_2301315_-	hypothetical protein	NA	NA	NA	NA
WP_021140806.1\|2301415_2301976_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	1.3e-31	46.1
WP_021140807.1\|2302568_2304059_-	hypothetical protein	NA	NA	NA	NA
WP_021140808.1\|2304296_2304509_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_021140809.1\|2304522_2305992_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_021140810.1\|2306296_2306968_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_021140811.1\|2307039_2307438_+	H-NS histone family protein	NA	NA	NA	NA
WP_021141278.1\|2308104_2309667_+\|transposase	IS21-like element ISAs28 family transposase	K4I413	Acidithiobacillus_phage	9.6e-125	46.0
WP_021141277.1\|2309690_2310446_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.4
WP_080937960.1\|2310541_2310991_+	LuxR family transcriptional regulator	A0A1I9KF49	Aeromonas_phage	2.4e-20	40.1
WP_021141172.1\|2311218_2311737_+	type VI secretion system effector Hcp1	NA	NA	NA	NA
WP_021141173.1\|2311921_2312209_+	type VI secretion system PAAR protein	NA	NA	NA	NA
WP_021141174.1\|2312220_2314314_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.9e-31	26.5
WP_021141175.1\|2314316_2315057_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_021141176.1\|2315339_2315822_+	hypothetical protein	NA	NA	NA	NA
WP_021141177.1\|2315814_2316321_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_021141178.1\|2316442_2316958_+	hypothetical protein	NA	NA	NA	NA
WP_010676219.1\|2317419_2318517_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_099368957.1\|2318612_2319287_+	replication initiation protein	NA	NA	NA	NA
WP_021141248.1\|2319336_2320215_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_080937966.1\|2320228_2320807_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_088813959.1\|2322400_2323961_+\|transposase	IS3-like element ISAs20 family transposase	NA	NA	NA	NA
WP_004576012.1\|2324788_2326207_+\|transposase	IS66-like element ISAs21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2332804 : 2383533

Acidithiobacillus_phage(11.11%)

bacteriocin,integrase,tRNA,transposase,protease

attL 2333919:2333978|attR 2371921:2372016

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019706001.1\|2332804_2333752_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
2333919:2333978	attL	NA	NA	NA	NA
WP_021141029.1\|2334452_2337098_+	AAA family ATPase	NA	NA	NA	NA
WP_021141028.1\|2337225_2338434_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GNR7	Pseudomonas_phage	1.1e-40	32.1
WP_021141027.1\|2338829_2340383_+	methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	4.3e-32	43.8
WP_021141026.1\|2340516_2342100_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_034524454.1\|2342190_2342850_+	TIGR01621 family pseudouridine synthase	NA	NA	NA	NA
WP_021141024.1\|2342867_2343500_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_021141023.1\|2343758_2344871_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_099368872.1\|2345787_2347353_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
WP_043851824.1\|2347375_2348131_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.0
WP_021140576.1\|2349961_2350981_-\|transposase	IS110-like element ISAs16 family transposase	NA	NA	NA	NA
WP_133280087.1\|2351593_2352832_+	MFS transporter	NA	NA	NA	NA
WP_080937936.1\|2352886_2355949_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	54.8
WP_109422569.1\|2356415_2356820_+	hypothetical protein	NA	NA	NA	NA
WP_021140580.1\|2357131_2357716_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_034524274.1\|2357724_2360283_+	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	3.2e-32	30.5
WP_021140582.1\|2360391_2361609_-	J domain-containing protein	NA	NA	NA	NA
WP_005310722.1\|2362367_2363231_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.7e-27	30.9
WP_005300025.1\|2363341_2363560_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_005310725.1\|2363789_2364107_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	5.3e-14	48.1
WP_005310727.1\|2364166_2366419_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.2e-168	43.1
WP_005300033.1\|2366487_2366706_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_021140583.1\|2366774_2367491_-	arginyltransferase	NA	NA	NA	NA
WP_021140584.1\|2367487_2368195_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_005310731.1\|2368214_2368685_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_021140585.1\|2368787_2370035_-	response regulator	A0A127AWB9	Bacillus_phage	2.2e-15	32.2
WP_021140586.1\|2370092_2371043_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.0e-60	43.2
WP_139723369.1\|2371101_2371518_-	hypothetical protein	NA	NA	NA	NA
WP_099368958.1\|2371755_2371914_-	alanine dehydrogenase	NA	NA	NA	NA
WP_099368922.1\|2372066_2373083_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	2.9e-186	99.4
2371921:2372016	attR	NA	NA	NA	NA
WP_005300047.1\|2373314_2373806_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_021139611.1\|2374008_2376534_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	7.3e-90	49.6
WP_034523846.1\|2376611_2377220_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_021139609.1\|2377344_2378682_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.4e-78	41.2
WP_021139608.1\|2379037_2380333_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-90	42.5
WP_005310746.1\|2380520_2381009_+\|bacteriocin	bacteriocin production protein	NA	NA	NA	NA
WP_005310748.1\|2381030_2382551_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-87	42.4
WP_021139607.1\|2382774_2383533_+\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA

DBSCAN-SWA_6

2669703 : 2739697

Catovirus(25.0%)

integrase,transposase,tRNA

attL 2693164:2693181|attR 2747879:2747896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368974.1\|2669703_2670846_+\|transposase	IS4-like element ISAs18 family transposase	NA	NA	NA	NA
WP_010676219.1\|2671792_2672890_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_088821966.1\|2672941_2674029_-\|transposase	IS3-like element ISAs22 family transposase	NA	NA	NA	NA
WP_034523647.1\|2674516_2675587_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_005311439.1\|2675671_2676094_+	CBS domain-containing protein	NA	NA	NA	NA
WP_034523646.1\|2676297_2680185_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	2.4e-55	27.1
WP_034523643.1\|2680263_2681130_+	hypothetical protein	NA	NA	NA	NA
WP_005311442.1\|2681236_2681524_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_021138925.1\|2681666_2682311_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_021138924.1\|2682340_2683456_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_021138923.1\|2683514_2684552_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_020379601.1\|2684772_2685480_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021138922.1\|2685702_2686890_-	acyltransferase	NA	NA	NA	NA
WP_021138921.1\|2687228_2688419_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_021138920.1\|2688533_2689964_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-26	32.0
WP_021138919.1\|2690050_2690323_+	acylphosphatase	NA	NA	NA	NA
WP_021138918.1\|2690392_2691028_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_021138917.1\|2691219_2693253_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
2693164:2693181	attL	NA	NA	NA	NA
WP_034523641.1\|2693439_2694522_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_021138915.1\|2694631_2695276_+	uridine kinase	A0A1V0SAA3	Catovirus	2.1e-33	39.0
WP_005311470.1\|2695339_2695921_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.6e-29	40.5
WP_021138914.1\|2696347_2697820_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_034523639.1\|2698565_2701766_-	ribonuclease E	NA	NA	NA	NA
WP_034523638.1\|2702140_2703124_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_021138911.1\|2703123_2703771_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_021138910.1\|2703858_2704440_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_005311491.1\|2704742_2705264_+	23S rRNA accumulation protein YceD	NA	NA	NA	NA
WP_005311492.1\|2705283_2705451_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_011898705.1\|2705460_2706480_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_021138909.1\|2706487_2707447_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_021138908.1\|2707519_2708455_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_021138907.1\|2708468_2709203_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	2.2e-18	34.0
WP_005300909.1\|2709360_2709597_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.7e-09	47.1
WP_021138906.1\|2709679_2710921_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_034523636.1\|2710936_2711797_+	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_021138904.1\|2711786_2712788_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_021138903.1\|2712787_2713429_+	dTMP kinase	A0A1L2BX49	Bacteriophage	3.8e-27	40.3
WP_021138902.1\|2713413_2714361_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_034523634.1\|2714386_2715166_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA
WP_046400708.1\|2715489_2716479_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_005311516.1\|2716648_2716921_+	hypothetical protein	NA	NA	NA	NA
WP_021138898.1\|2717113_2718544_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_021138897.1\|2718675_2721228_-	MCE family protein	NA	NA	NA	NA
WP_005311518.1\|2721330_2721939_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_005311519.1\|2721916_2722549_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_021138896.1\|2722696_2723584_+	methylisocitrate lyase	NA	NA	NA	NA
WP_021138895.1\|2723595_2724723_+	2-methylcitrate synthase	NA	NA	NA	NA
WP_021138894.1\|2724733_2726179_+	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA
WP_005311522.1\|2726254_2726998_-	hypothetical protein	NA	NA	NA	NA
WP_005311524.1\|2727272_2727605_+	poly(3-hydroxybutyrate) depolymerase	NA	NA	NA	NA
WP_021138893.1\|2727911_2729342_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA
WP_021138892.1\|2729421_2730222_-	hypothetical protein	NA	NA	NA	NA
WP_021138891.1\|2730235_2730904_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_021138890.1\|2730905_2732090_-	patatin	NA	NA	NA	NA
WP_021138889.1\|2732183_2732762_-	phasin family protein	NA	NA	NA	NA
WP_099368975.1\|2733007_2734978_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.3e-05	25.0
WP_021138887.1\|2735027_2735924_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_021138886.1\|2736095_2736416_+	YebG family protein	NA	NA	NA	NA
WP_034523649.1\|2736716_2737994_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_021138884.1\|2738344_2739697_+\|integrase	site-specific integrase	NA	NA	NA	NA
2747879:2747896	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2833302 : 2901809

Acidithiobacillus_phage(22.22%)

transposase,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368981.1\|2833302_2834631_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_021140533.1\|2834684_2837489_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.6e-106	34.4
WP_021140534.1\|2837690_2838407_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_021140535.1\|2838406_2839093_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_021140536.1\|2839648_2841916_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.9e-299	66.1
WP_021140537.1\|2841996_2843130_+	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	4.9e-163	74.0
WP_021140539.1\|2843282_2843603_+	2Fe-2S ferredoxin-like protein	NA	NA	NA	NA
WP_021140540.1\|2843806_2844958_-	murein transglycosylase A	NA	NA	NA	NA
WP_005315494.1\|2845108_2845360_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_021140541.1\|2845460_2847185_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_021140542.1\|2847181_2848177_-	1-phosphofructokinase	NA	NA	NA	NA
WP_021140543.1\|2848176_2849277_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_021140544.1\|2849584_2850571_+	catabolite repressor/activator	NA	NA	NA	NA
WP_021140545.1\|2850903_2852097_+	tyrosine-specific transporter	NA	NA	NA	NA
WP_005315478.1\|2852365_2852770_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_021140546.1\|2852769_2853459_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_021140547.1\|2853569_2854973_-	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	3.4e-44	30.5
WP_080937935.1\|2855131_2856139_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021140549.1\|2856260_2857349_-	chorismate synthase	A0A291AU41	Pandoravirus	7.5e-84	45.6
WP_021140550.1\|2857361_2858297_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_021140551.1\|2858379_2858904_+	endonuclease SmrB	NA	NA	NA	NA
WP_099368947.1\|2859754_2860842_-\|transposase	IS3-like element ISKpn10 family transposase	NA	NA	NA	NA
WP_046400746.1\|2861751_2863317_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
WP_043851824.1\|2863339_2864095_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.0
WP_010676219.1\|2865180_2866278_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_021140049.1\|2866882_2868076_-	methyltransferase	NA	NA	NA	NA
WP_017412092.1\|2868365_2868944_+	PhnA protein	NA	NA	NA	NA
WP_021140048.1\|2869129_2871280_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_005311309.1\|2871279_2872590_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_021140047.1\|2872772_2873723_+	MoxR family ATPase	NA	NA	NA	NA
WP_034524020.1\|2873730_2874630_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_021140045.1\|2874632_2875181_+	DUF4381 domain-containing protein	NA	NA	NA	NA
WP_021140044.1\|2875177_2876173_+	VWA domain-containing protein	NA	NA	NA	NA
WP_034524030.1\|2876197_2877697_+	VWA domain-containing protein	NA	NA	NA	NA
WP_080937921.1\|2877660_2879229_+	hypothetical protein	NA	NA	NA	NA
WP_021140041.1\|2879265_2879856_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_021140040.1\|2879848_2880592_+	DUF3379 domain-containing protein	NA	NA	NA	NA
WP_021140039.1\|2881000_2882287_+	long-chain fatty acid transporter 1	NA	NA	NA	NA
WP_021140038.1\|2882540_2883797_+	transporter	NA	NA	NA	NA
WP_034524016.1\|2883927_2885151_+	EAL domain-containing protein	NA	NA	NA	NA
WP_021140036.1\|2885147_2886311_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_021140035.1\|2886443_2886860_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_021140033.1\|2887632_2889105_+	recombinase family protein	NA	NA	NA	NA
WP_099368984.1\|2889146_2889473_-	hypothetical protein	NA	NA	NA	NA
WP_080937919.1\|2889803_2893175_-	hypothetical protein	A0A219YC65	Aeromonas_phage	0.0e+00	64.6
WP_139723404.1\|2893258_2893546_-	hypothetical protein	NA	NA	NA	NA
WP_021140030.1\|2893562_2893826_-	hypothetical protein	NA	NA	NA	NA
WP_139723403.1\|2893825_2894221_-	hypothetical protein	NA	NA	NA	NA
WP_021140029.1\|2894275_2896831_-	hypothetical protein	NA	NA	NA	NA
WP_021140028.1\|2896929_2897154_-	hypothetical protein	NA	NA	NA	NA
WP_125606572.1\|2897236_2897671_-	hypothetical protein	NA	NA	NA	NA
WP_021140026.1\|2897697_2898027_-	hypothetical protein	NA	NA	NA	NA
WP_021140025.1\|2898102_2898519_-	hypothetical protein	NA	NA	NA	NA
WP_021140024.1\|2898536_2898941_-	hypothetical protein	NA	NA	NA	NA
WP_021140023.1\|2898937_2899507_-	hypothetical protein	NA	NA	NA	NA
WP_021140021.1\|2899842_2900385_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_021140020.1\|2900612_2901809_-\|capsid	phage major capsid protein	A0A141GEW2	Brucella_phage	1.3e-09	23.8

DBSCAN-SWA_8

2961855 : 3014837

Acidithiobacillus_phage(28.57%)

transposase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088813959.1\|2961855_2963417_-\|transposase	IS3-like element ISAs20 family transposase	NA	NA	NA	NA
WP_145958010.1\|2963459_2963786_-	hypothetical protein	NA	NA	NA	NA
WP_021141106.1\|2964434_2965460_-\|capsid	minor capsid protein E	NA	NA	NA	NA
WP_021141107.1\|2965518_2965854_-	hypothetical protein	NA	NA	NA	NA
WP_021141108.1\|2965856_2966195_-	hypothetical protein	NA	NA	NA	NA
WP_021141109.1\|2966695_2968483_-	hypothetical protein	NA	NA	NA	NA
WP_139723432.1\|2968494_2968887_-	hypothetical protein	NA	NA	NA	NA
WP_021141110.1\|2969027_2969381_-	hypothetical protein	NA	NA	NA	NA
WP_139723431.1\|2969396_2969609_-	hypothetical protein	NA	NA	NA	NA
WP_080937959.1\|2969685_2970444_-	HTH domain-containing protein	NA	NA	NA	NA
WP_162516026.1\|2970421_2970586_-	hypothetical protein	NA	NA	NA	NA
WP_021141112.1\|2970588_2970789_-	hypothetical protein	NA	NA	NA	NA
WP_001809438.1\|2972031_2973063_-\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_139723430.1\|2973258_2973519_-	hypothetical protein	NA	NA	NA	NA
WP_039272517.1\|2975820_2977362_+\|transposase	IS21-like element ISAs29 family transposase	K4I413	Acidithiobacillus_phage	3.4e-130	47.6
WP_039272515.1\|2977376_2978132_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-58	50.6
WP_021140248.1\|2979664_2980453_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_021140247.1\|2980545_2981982_-	arginine-ornithine antiporter	NA	NA	NA	NA
WP_021140246.1\|2982370_2983132_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.4e-06	23.5
WP_021140245.1\|2983201_2984134_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_021140244.1\|2984211_2985324_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_021140243.1\|2985316_2986114_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_021140242.1\|2986316_2987474_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_021140241.1\|2987615_2989127_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_021140240.1\|2989379_2990528_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_021140239.1\|2990524_2992144_+	3-methylcrotonyl CoA carboxylase subunit beta	A0A1B2ITV7	Pike_perch_iridovirus	4.3e-19	52.4
WP_021140238.1\|2992154_2992994_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_021140237.1\|2993097_2995083_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_021140236.1\|2995097_2996036_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	4.2e-43	35.7
WP_005315403.1\|2996050_2996461_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_034524109.1\|2996498_2997260_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_005315399.1\|3000880_3001477_+	hypothetical protein	NA	NA	NA	NA
WP_034524108.1\|3001558_3002374_-	zinc-dependent peptidase	NA	NA	NA	NA
WP_021140233.1\|3002392_3002830_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021140232.1\|3003130_3004630_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_021140231.1\|3004709_3005516_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_021140230.1\|3005619_3006261_-	3'-5' exonuclease	NA	NA	NA	NA
WP_021140229.1\|3006263_3008090_-	CBS domain-containing protein	NA	NA	NA	NA
WP_021140228.1\|3008134_3009850_-	cation acetate symporter	NA	NA	NA	NA
WP_021140227.1\|3009858_3010125_-	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_001310555.1\|3012448_3013465_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_099368897.1\|3013820_3014837_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1

DBSCAN-SWA_9

3053070 : 3133511

Tupanvirus(21.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019706001.1\|3053070_3054018_-\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_021141117.1\|3054268_3054952_-	hypothetical protein	NA	NA	NA	NA
WP_021141118.1\|3055473_3055746_-	hypothetical protein	NA	NA	NA	NA
WP_021141119.1\|3056128_3057709_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_017412971.1\|3057792_3059256_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.3e-93	39.6
WP_021141121.1\|3060032_3060782_+	energy transducer TonB	NA	NA	NA	NA
WP_034524514.1\|3060784_3061537_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_021141123.1\|3061536_3061959_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_010676219.1\|3062526_3063624_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_021139138.1\|3064354_3065725_+	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	1.4e-34	36.9
WP_021139139.1\|3065786_3067154_-	heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA	NA	NA	NA
WP_021139140.1\|3067416_3069012_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-26	40.8
WP_021139141.1\|3069105_3070161_-	3-deoxy-7-phosphoheptulonate synthase AroG	S4W5F1	Pandoravirus	5.2e-82	50.3
WP_021139142.1\|3070399_3071683_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_005315304.1\|3071854_3072943_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.1e-87	46.9
WP_021139143.1\|3073167_3074097_-	electron transfer flavoprotein alpha-subunit	NA	NA	NA	NA
WP_021139144.1\|3074191_3074944_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_021139145.1\|3075070_3076720_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_005315297.1\|3077212_3078160_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_021139146.1\|3078323_3078785_+	DUF2919 domain-containing protein	NA	NA	NA	NA
WP_021139147.1\|3078800_3079553_-	hypothetical protein	NA	NA	NA	NA
WP_021139148.1\|3079809_3081048_+	siderophore amonabactin export MFS transporter	NA	NA	NA	NA
WP_021139149.1\|3081105_3083079_+	siderophore amonabactin TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	8.4e-17	35.6
WP_021139150.1\|3083149_3084166_+	amonabactin ABC transporter permease subunit 2	NA	NA	NA	NA
WP_034523720.1\|3084180_3085248_+	amonabactin ABC transporter permease subunit 1	NA	NA	NA	NA
WP_021139152.1\|3085247_3086051_+	amonabactin ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.9e-14	25.8
WP_021139153.1\|3086120_3086846_-	amonabactin biosynthesis phosphopantetheinyl transferase AmoD	NA	NA	NA	NA
WP_021139154.1\|3087004_3087949_+	amonabactin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021139155.1\|3088026_3089583_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	2.5e-40	27.7
WP_099368993.1\|3089579_3095831_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.3e-73	24.6
WP_034523724.1\|3095839_3096589_-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	NA	NA	NA	NA
WP_021139159.1\|3096609_3099699_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	7.7e-41	26.2
WP_021139160.1\|3099695_3100604_-	isochorismatase family protein	NA	NA	NA	NA
WP_021139161.1\|3100627_3102298_-	(2,3-dihydroxybenzoyl)adenylate synthase	NA	NA	NA	NA
WP_034523722.1\|3102294_3103488_-	isochorismate synthase	NA	NA	NA	NA
WP_021139163.1\|3103812_3104364_+	lipoprotein	NA	NA	NA	NA
WP_021139164.1\|3104510_3106511_+	hypothetical protein	NA	NA	NA	NA
WP_021139165.1\|3106605_3107880_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_021139166.1\|3108067_3109711_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_005315253.1\|3109673_3110168_-	hypothetical protein	NA	NA	NA	NA
WP_005315249.1\|3110348_3110711_-	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_034523725.1\|3110824_3112456_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-23	38.0
WP_021139168.1\|3112614_3113919_-	inosine/guanosine kinase	NA	NA	NA	NA
WP_021139169.1\|3114105_3114498_-	hypothetical protein	NA	NA	NA	NA
WP_021139170.1\|3114569_3115544_-	ferrochelatase	NA	NA	NA	NA
WP_021139171.1\|3115649_3116294_-	adenylate kinase	NA	NA	NA	NA
WP_005315220.1\|3116340_3116535_-	hypothetical protein	NA	NA	NA	NA
WP_021139172.1\|3116551_3118465_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.6e-116	36.2
WP_021139174.1\|3118681_3119284_-	recombination protein RecR	NA	NA	NA	NA
WP_034523723.1\|3119480_3120314_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_021139176.1\|3120328_3122443_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_019706001.1\|3122936_3123884_+\|transposase	IS30-like element ISAs2 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-41	35.7
WP_099368994.1\|3124006_3125149_+\|transposase	IS4-like element ISAs18 family transposase	NA	NA	NA	NA
WP_021141239.1\|3125153_3125558_-	hypothetical protein	NA	NA	NA	NA
WP_021141238.1\|3125640_3127785_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_021141237.1\|3127840_3128440_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_021141311.1\|3129577_3130714_+\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_088813959.1\|3131950_3133511_+\|transposase	IS3-like element ISAs20 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

3199214 : 3245515

Staphylococcus_phage(12.5%)

integrase,transposase

attL 3221288:3221347|attR 3251307:3252842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611830.1\|3199214_3200543_+\|transposase	IS4-like element ISAs30 family transposase	NA	NA	NA	NA
WP_005315043.1\|3200589_3202260_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_021140654.1\|3202354_3203047_-	(d)CMP kinase	NA	NA	NA	NA
WP_021140653.1\|3203295_3203889_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.6e-42	46.5
WP_005315034.1\|3204035_3205010_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_021140652.1\|3205083_3205959_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021140651.1\|3206052_3207261_+	MFS transporter	NA	NA	NA	NA
WP_021140650.1\|3207302_3207857_-	hypothetical protein	NA	NA	NA	NA
WP_021140649.1\|3207850_3208615_-	hypothetical protein	NA	NA	NA	NA
WP_021140648.1\|3208804_3209530_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_021140647.1\|3209623_3211561_-	EAL domain-containing protein	G3MA91	Bacillus_virus	6.3e-17	32.1
WP_034524291.1\|3211730_3212432_+	DUF2982 domain-containing protein	NA	NA	NA	NA
WP_021140645.1\|3212505_3213444_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_034524290.1\|3213498_3214530_+	response regulator	NA	NA	NA	NA
WP_021140643.1\|3214539_3214971_+	PAS domain-containing protein	NA	NA	NA	NA
WP_021140642.1\|3215034_3216051_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_021140641.1\|3216638_3217577_+	universal stress protein	NA	NA	NA	NA
WP_021140640.1\|3217592_3220322_+	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	3.3e-72	28.5
WP_021140639.1\|3220554_3221256_-	SDR family oxidoreductase	NA	NA	NA	NA
3221288:3221347	attL	NA	NA	NA	NA
WP_005327996.1\|3221393_3222812_+\|transposase	IS66-like element ISUnCu16 family transposase	NA	NA	NA	NA
WP_005314974.1\|3222883_3223291_-	hypothetical protein	A0A1C6ZDG7	Pseudomonas_phage	7.3e-08	45.7
WP_021140891.1\|3223399_3224299_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_011898630.1\|3224367_3224646_-	RNA-binding protein	NA	NA	NA	NA
WP_021140892.1\|3224864_3225407_-	hypothetical protein	NA	NA	NA	NA
WP_034524381.1\|3225513_3226284_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.9e-29	37.5
WP_017411548.1\|3226276_3227074_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_021140894.1\|3227076_3227898_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_080937949.1\|3227870_3228773_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_021140896.1\|3228772_3229510_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_021140897.1\|3229552_3230158_+	LemA family protein	A0A1X9IGG1	Lactococcus_phage	1.4e-15	33.9
WP_021140898.1\|3230154_3230889_+	TPM domain-containing protein	NA	NA	NA	NA
WP_005314938.1\|3230909_3231527_+	membrane protein	NA	NA	NA	NA
WP_046400743.1\|3232398_3233277_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005346570.1\|3233568_3234729_+\|integrase	site-specific integrase	Q76UT6	Pseudomonas_virus	7.1e-32	34.1
WP_034524388.1\|3235103_3235724_+	hypothetical protein	NA	NA	NA	NA
WP_080937950.1\|3235714_3237424_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_139723416.1\|3238026_3238341_+	hypothetical protein	NA	NA	NA	NA
WP_139723415.1\|3238362_3238620_+	hypothetical protein	NA	NA	NA	NA
WP_099369000.1\|3238991_3239288_+	hypothetical protein	NA	NA	NA	NA
WP_005327996.1\|3239245_3240664_-\|transposase	IS66-like element ISUnCu16 family transposase	NA	NA	NA	NA
WP_080937969.1\|3240776_3241832_+	SEL1-like repeat protein	NA	NA	NA	NA
WP_046400746.1\|3243949_3245515_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
3251307:3252842	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3355479 : 3422644

Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(14.29%)

integrase,transposase,tRNA

attL 3406355:3406414|attR 3422987:3423050

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076612160.1\|3355479_3356520_-\|transposase	IS481-like element ISAs19 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.7e-72	42.1
WP_046400734.1\|3356756_3357926_-	DUF1615 domain-containing protein	NA	NA	NA	NA
WP_021140151.1\|3358142_3359801_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_021140150.1\|3360325_3363550_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_021140149.1\|3363566_3364718_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.1e-48	33.2
WP_021140148.1\|3365394_3366207_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_021140147.1\|3366454_3367423_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_021140146.1\|3367841_3369176_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_021140145.1\|3369329_3369938_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_021140144.1\|3370193_3370847_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_005314621.1\|3371075_3372308_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	6.9e-110	48.9
WP_005314618.1\|3372550_3372931_-	diacylglycerol kinase	NA	NA	NA	NA
WP_021140143.1\|3373085_3374147_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	9.2e-87	49.3
WP_021140142.1\|3374263_3375073_-	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	2.8e-11	30.6
WP_021140141.1\|3375132_3376140_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_021140140.1\|3376243_3376975_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005314602.1\|3377086_3377443_+	DMT family protein	NA	NA	NA	NA
WP_011898593.1\|3377502_3378642_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_021140139.1\|3378914_3380186_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_021140138.1\|3380332_3380812_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_021140137.1\|3380907_3381150_-	hypothetical protein	NA	NA	NA	NA
WP_021140136.1\|3381146_3383417_-	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA
WP_005314583.1\|3383413_3383641_-	ferrous iron transport protein A	NA	NA	NA	NA
WP_005314581.1\|3383760_3384090_+	translation initiation factor	NA	NA	NA	NA
WP_005314579.1\|3384334_3384892_+	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_021140135.1\|3385144_3386083_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_021140134.1\|3386119_3387127_+	DUF4401 domain-containing protein	NA	NA	NA	NA
WP_021140133.1\|3387123_3387627_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_034524070.1\|3387700_3388447_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_034524069.1\|3388562_3389309_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021140130.1\|3389500_3390514_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	3.8e-13	29.8
WP_021140129.1\|3391207_3391516_-	hypothetical protein	NA	NA	NA	NA
WP_011191342.1\|3392535_3393804_+\|transposase	IS4-like element ISApu1 family transposase	NA	NA	NA	NA
WP_099369012.1\|3394085_3395102_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.9e-185	98.8
WP_076612160.1\|3395174_3396215_-\|transposase	IS481-like element ISAs19 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.7e-72	42.1
WP_021141043.1\|3396988_3398365_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	8.7e-45	33.5
WP_005314539.1\|3398556_3399054_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_021141042.1\|3399043_3399754_+	DUF4269 domain-containing protein	NA	NA	NA	NA
WP_021141041.1\|3399750_3400515_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_017413027.1\|3400595_3400844_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_005314534.1\|3400979_3401156_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_034524459.1\|3401294_3402068_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	6.6e-18	31.3
WP_021141038.1\|3402150_3403083_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_125729364.1\|3403714_3403999_+	hypothetical protein	NA	NA	NA	NA
WP_021141035.1\|3404205_3404937_+	hypothetical protein	NA	NA	NA	NA
WP_021141034.1\|3405584_3405869_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005320072.1\|3405870_3406203_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
3406355:3406414	attL	NA	NA	NA	NA
WP_021141032.1\|3406625_3407633_+	Fic family protein	D7RWK9	Brochothrix_phage	3.4e-06	24.4
WP_041206012.1\|3409350_3410913_+\|transposase	IS21-like element ISAs28 family transposase	K4I413	Acidithiobacillus_phage	3.3e-125	46.2
WP_099369014.1\|3410936_3411692_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-52	45.4
WP_099369015.1\|3413650_3414382_-	macrodomain Ori organization protein MaoP	NA	NA	NA	NA
WP_080937902.1\|3414832_3416275_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_139723383.1\|3416792_3417200_-	hypothetical protein	NA	NA	NA	NA
WP_046400722.1\|3417289_3417871_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_021139614.1\|3417848_3418730_-	nucleotidyltransferase	NA	NA	NA	NA
WP_021139615.1\|3419431_3419851_-	DUF2787 family protein	NA	NA	NA	NA
WP_021139616.1\|3419911_3420517_-	hypothetical protein	NA	NA	NA	NA
WP_021139617.1\|3420639_3420942_-	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_021139618.1\|3420934_3421303_-	hypothetical protein	NA	NA	NA	NA
WP_021139619.1\|3421438_3422644_-\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	6.5e-12	34.6
3422987:3423050	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4158847 : 4237577

Bacillus_phage(23.08%)

integrase,tRNA,holin,transposase,protease

attL 4161295:4161354|attR 4180481:4180543

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034524326.1\|4158847_4161124_+\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
4161295:4161354	attL	NA	NA	NA	NA
WP_080937944.1\|4162706_4162970_+	hypothetical protein	NA	NA	NA	NA
WP_034524328.1\|4163119_4163635_+	hypothetical protein	NA	NA	NA	NA
WP_099369048.1\|4163795_4164812_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.5e-184	98.5
WP_021139679.1\|4165147_4166269_+	polysaccharide export protein	NA	NA	NA	NA
WP_021139678.1\|4166332_4166761_+	protein-tyrosine-phosphatase	NA	NA	NA	NA
WP_034523866.1\|4166816_4169000_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_162516014.1\|4169178_4170057_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_021139675.1\|4170783_4171332_+	hypothetical protein	NA	NA	NA	NA
WP_021139674.1\|4171328_4171631_+	DUF1232 domain-containing protein	A0A2I7S9Z5	Vibrio_phage	1.2e-07	39.2
WP_021139673.1\|4171653_4172274_+	hypothetical protein	NA	NA	NA	NA
WP_021139672.1\|4172270_4172705_+	DUF2787 family protein	NA	NA	NA	NA
WP_021139670.1\|4173195_4174437_+\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	1.9e-27	30.9
WP_021139669.1\|4174722_4175616_+	WYL domain-containing protein	A0A0R6PH67	Moraxella_phage	1.1e-32	28.8
WP_034523865.1\|4175742_4175922_+	hypothetical protein	NA	NA	NA	NA
WP_161797136.1\|4176348_4178181_-	DUF927 domain-containing protein	NA	NA	NA	NA
WP_021139667.1\|4178624_4179779_-\|integrase	site-specific integrase	A0A0M3LRG1	Mannheimia_phage	1.7e-09	25.4
WP_021139665.1\|4181088_4182306_-	BCCT family transporter	NA	NA	NA	NA
4180481:4180543	attR	NA	NA	NA	NA
WP_021139664.1\|4182549_4184229_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	6.4e-50	28.2
WP_021139663.1\|4184238_4185702_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_021139662.1\|4186530_4187808_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_021139661.1\|4187907_4191468_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	5.6e-11	23.3
WP_021139660.1\|4191521_4191731_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_021139659.1\|4191929_4193225_-	sulfurtransferase	NA	NA	NA	NA
WP_021139658.1\|4193254_4194175_-	glutaminase B	NA	NA	NA	NA
WP_005317987.1\|4194304_4194637_-	YggL family protein	NA	NA	NA	NA
WP_021139657.1\|4194668_4195382_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_021139656.1\|4195687_4196755_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_021139655.1\|4196971_4198153_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_034523862.1\|4198238_4199768_-	EAL domain-containing protein	NA	NA	NA	NA
WP_021139653.1\|4200092_4200998_+	TIGR01777 family protein	NA	NA	NA	NA
WP_021139652.1\|4201081_4203529_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_005318003.1\|4203583_4204282_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-32	38.4
WP_021139651.1\|4204280_4204880_+	arylesterase	NA	NA	NA	NA
WP_021139650.1\|4204969_4205914_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.5e-32	30.2
WP_099369051.1\|4206240_4214775_-	retention module-containing protein	NA	NA	NA	NA
WP_021140621.1\|4215001_4216663_-	putative transporter	NA	NA	NA	NA
WP_021140622.1\|4216780_4217416_-	hemolysin III family protein	NA	NA	NA	NA
WP_021140623.1\|4217640_4219176_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_005318063.1\|4219261_4219813_+	septation protein A	NA	NA	NA	NA
WP_005318066.1\|4219839_4220136_+	YciI family protein	NA	NA	NA	NA
WP_021140624.1\|4220217_4220988_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_021140625.1\|4221154_4221475_+	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_021140626.1\|4221569_4222481_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	6.8e-62	47.0
WP_017412884.1\|4222694_4224092_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	7.6e-81	38.8
WP_034524283.1\|4224167_4225139_-	response regulator	NA	NA	NA	NA
WP_021140629.1\|4225234_4225708_-	response regulator	NA	NA	NA	NA
WP_021140630.1\|4225676_4227020_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_021140631.1\|4227016_4228432_-	SLC13/DASS family transporter	NA	NA	NA	NA
WP_021140632.1\|4228641_4229340_+	hypothetical protein	NA	NA	NA	NA
WP_021140633.1\|4229411_4230266_+	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	2.4e-08	28.4
WP_021140634.1\|4230401_4231037_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_021140635.1\|4231098_4232262_-	ABC transporter permease	NA	NA	NA	NA
WP_034524285.1\|4232255_4233401_-	ABC transporter permease	NA	NA	NA	NA
WP_080937939.1\|4233400_4234405_-	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_021140638.1\|4234401_4235808_-	TolC family protein	NA	NA	NA	NA
WP_046400746.1\|4236011_4237577_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8

DBSCAN-SWA_13

4283954 : 4329492

Acidithiobacillus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046400746.1\|4283954_4285520_-\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8
WP_021140572.1\|4286634_4287738_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_021140571.1\|4287803_4288394_+	beta-phosphoglucomutase family hydrolase	NA	NA	NA	NA
WP_005313994.1\|4288530_4288890_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_034524269.1\|4289065_4290343_+	paraquat-inducible protein A	NA	NA	NA	NA
WP_021140569.1\|4290335_4291982_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_021140568.1\|4291981_4292551_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_021140567.1\|4292626_4293658_-	porin OmpA	NA	NA	NA	NA
WP_021140566.1\|4293891_4294626_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_034524267.1\|4294685_4295693_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_005313975.1\|4295932_4296313_+	YgiW/YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_034524271.1\|4296381_4297482_-	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_005313967.1\|4297571_4297844_-	oxidative damage protection protein	NA	NA	NA	NA
WP_021140563.1\|4297852_4298914_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_021140562.1\|4299015_4299696_-	GspB family T2SS assembly factor variant ExeB	NA	NA	NA	NA
WP_021140561.1\|4299695_4301339_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	6.6e-07	26.5
WP_021140560.1\|4301629_4302871_+	multifunctional CCA addition/repair protein	A0A0S1S197	Klebsiella_phage	2.5e-83	44.2
WP_021140559.1\|4302936_4304202_-	inorganic phosphate transporter	M4QMY4	Ostreococcus_lucimarinus_virus	1.9e-62	37.1
WP_021140558.1\|4304227_4304908_-	TIGR00153 family protein	NA	NA	NA	NA
WP_034524265.1\|4305077_4306046_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_021140556.1\|4306140_4306608_-	TonB domain-containing protein	NA	NA	NA	NA
WP_021140555.1\|4306762_4307686_-	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	A0A1W6JP29	Morganella_phage	2.4e-54	39.0
WP_021140554.1\|4307982_4309410_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	E3SJ88	Synechococcus_phage	3.2e-18	39.8
WP_099369056.1\|4309513_4310539_+\|transposase	IS110-like element ISAs24 family transposase	NA	NA	NA	NA
WP_011898310.1\|4310963_4312289_-	outer membrane channel protein TolC	NA	NA	NA	NA
WP_021141264.1\|4312595_4313237_+	ADP-ribose diphosphatase	A0A1S6L1P8	Vibrio_phage	5.7e-23	36.0
WP_021141263.1\|4313345_4313792_+	DUF1249 domain-containing protein	NA	NA	NA	NA
WP_099368897.1\|4313938_4314955_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_034524527.1\|4315017_4315836_+	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_021141151.1\|4315848_4316436_+	esterase	NA	NA	NA	NA
WP_034524528.1\|4316438_4317062_+	NUDIX hydrolase	NA	NA	NA	NA
WP_021141153.1\|4317099_4317501_+	GFA family protein	NA	NA	NA	NA
WP_021141154.1\|4317729_4319625_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.0e-91	36.0
WP_021141155.1\|4319709_4322004_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	9.6e-89	36.3
WP_021141156.1\|4322061_4322709_-	hypothetical protein	NA	NA	NA	NA
WP_021141311.1\|4322864_4324001_-\|transposase	ISAs1-like element ISAs12 family transposase	NA	NA	NA	NA
WP_001809438.1\|4325546_4326578_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_021141317.1\|4326593_4327322_-	hypothetical protein	NA	NA	NA	NA
WP_046400746.1\|4327926_4329492_+\|transposase	IS21-like element ISAs27 family transposase	K4I413	Acidithiobacillus_phage	2.9e-121	45.8

DBSCAN-SWA_14

4390627 : 4401009

uncultured_Caudovirales_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021139025.1\|4390627_4392886_-	patatin-like phospholipase domain-containing protein	A0A1V0SFX9	Hokovirus	2.0e-06	27.4
WP_021139026.1\|4393144_4395055_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.0e-20	30.3
WP_021139027.1\|4395218_4396865_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.8e-18	33.0
WP_017411943.1\|4397000_4397174_+	hypothetical protein	NA	NA	NA	NA
WP_021139028.1\|4397170_4398127_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	7.2e-14	29.7
WP_099369062.1\|4398248_4399468_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.7e-16	34.2
WP_021139031.1\|4399581_4401009_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-42	27.3

DBSCAN-SWA_15

4443050 : 4506200

uncultured_Mediterranean_phage(25.0%)

integrase,transposase,protease

attL 4473153:4473167|attR 4513684:4513698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017412546.1\|4443050_4443476_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	9.5e-27	46.3
WP_005314352.1\|4443472_4444102_-	stringent starvation protein A	NA	NA	NA	NA
WP_021140225.1\|4444189_4444924_-	cytochrome c1	NA	NA	NA	NA
WP_005314360.1\|4444920_4446138_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_005314362.1\|4446140_4446734_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_005314365.1\|4447029_4447422_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_005314367.1\|4447437_4447866_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_021140224.1\|4448132_4449227_-	cell division protein ZapE	NA	NA	NA	NA
WP_021140223.1\|4449367_4449748_+	YhcB family protein	NA	NA	NA	NA
WP_021140222.1\|4449829_4451191_+	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	6.6e-21	28.0
WP_021140221.1\|4451280_4452411_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IT49	uncultured_Mediterranean_phage	2.7e-20	26.6
WP_021140220.1\|4452727_4453087_+	transcriptional regulator	NA	NA	NA	NA
WP_021140219.1\|4453104_4453470_+	transcriptional regulator	NA	NA	NA	NA
WP_021140218.1\|4453469_4453766_+	DUF4312 family protein	NA	NA	NA	NA
WP_021140217.1\|4453806_4454583_+	DUF4311 domain-containing protein	NA	NA	NA	NA
WP_021140216.1\|4454594_4455245_+	DUF4310 family protein	NA	NA	NA	NA
WP_021140215.1\|4455287_4456427_+	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_021140214.1\|4456410_4457526_+	DgaE family pyridoxal phosphate-dependent ammonia lyase	NA	NA	NA	NA
WP_021140213.1\|4457525_4458266_+	KDGP aldolase family protein	NA	NA	NA	NA
WP_021140212.1\|4458369_4460274_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_005314403.1\|4460292_4460565_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_021140211.1\|4460585_4461452_-	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	1.6e-12	33.6
WP_021140210.1\|4461494_4461941_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_005305957.1\|4461943_4462231_-	ribosome hibernation promoting factor	NA	NA	NA	NA
WP_021140209.1\|4462252_4463692_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_005314412.1\|4463757_4464483_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-21	29.9
WP_005314414.1\|4464486_4465014_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_021140208.1\|4465000_4465561_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_005314419.1\|4465557_4466112_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.7e-39	60.7
WP_034524103.1\|4466111_4467107_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.2e-41	36.1
WP_011898278.1\|4467314_4468115_+	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	4.3e-20	31.5
WP_005314426.1\|4468114_4468894_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_005314428.1\|4468901_4469393_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_021140206.1\|4469402_4470035_+	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_021140205.1\|4470031_4470304_+	STAS domain-containing protein	NA	NA	NA	NA
WP_005306001.1\|4470303_4470561_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_021140204.1\|4470576_4471833_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_005314438.1\|4471924_4473268_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
4473153:4473167	attL	NA	NA	NA	NA
WP_021140203.1\|4473380_4473905_+	ribosome-associated protein	NA	NA	NA	NA
WP_021140202.1\|4473995_4477079_-	penicillin-binding protein	NA	NA	NA	NA
WP_088821966.1\|4477183_4478271_-\|transposase	IS3-like element ISAs22 family transposase	NA	NA	NA	NA
WP_005314445.1\|4478498_4478816_-	DUF496 family protein	NA	NA	NA	NA
WP_021140727.1\|4484907_4486104_+	NnrS family protein	NA	NA	NA	NA
WP_021140728.1\|4486114_4486690_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021140729.1\|4486811_4487963_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_021140730.1\|4488112_4489177_+	DUF3103 family protein	NA	NA	NA	NA
WP_021140731.1\|4489245_4490142_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_021140732.1\|4490471_4491272_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021140733.1\|4491336_4492917_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_021140734.1\|4492925_4494905_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.0e-22	27.1
WP_021140735.1\|4495124_4495736_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_021140736.1\|4496180_4497866_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.1e-17	32.1
WP_021140737.1\|4498009_4500838_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	56.3
WP_021140738.1\|4500933_4501596_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005316531.1\|4502117_4502708_+	single-stranded DNA-binding protein	R9TR60	Vibrio_phage	1.0e-55	59.5
WP_139723364.1\|4502873_4503227_+	hypothetical protein	NA	NA	NA	NA
WP_001809438.1\|4503414_4504446_+\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_145958012.1\|4504521_4504929_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011191341.1\|4504925_4506200_-\|transposase	IS4-like element ISApu2 family transposase	NA	NA	NA	NA
4513684:4513698	attR	NA	NA	NA	NA

DBSCAN-SWA_16

4532294 : 4545887

Bacillus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021141047.1\|4532294_4534289_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.7e-29	45.3
WP_021141048.1\|4534351_4534771_-	hypothetical protein	NA	NA	NA	NA
WP_021141049.1\|4534937_4535939_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-14	31.8
WP_021141050.1\|4536434_4536773_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_021141051.1\|4536798_4538040_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	3.2e-54	36.3
WP_099368897.1\|4538722_4539739_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_139723420.1\|4539776_4540154_-	5'-nucleotidase	Q6QLL3	Human_immunodeficiency_virus	1.6e-12	85.4
WP_021139928.1\|4540206_4542270_-	exodeoxyribonuclease V subunit alpha	A0A1P8DII4	Virus_Rctr197k	1.7e-28	28.0
WP_021139927.1\|4542266_4545887_-	exodeoxyribonuclease V subunit beta	A7KV33	Bacillus_phage	1.1e-11	22.8

DBSCAN-SWA_17

4945762 : 5002467

Salmonella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099368897.1\|4945762_4946779_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_021141099.1\|4948367_4949690_-	putative histamine N-monooxygenase	NA	NA	NA	NA
WP_034524495.1\|4949752_4954126_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	2.4e-32	23.9
WP_005319564.1\|4954461_4954713_+	isochorismatase	NA	NA	NA	NA
WP_034524496.1\|4954894_4956025_+	histidine decarboxylase	M1HEU9	Acanthocystis_turfacea_Chlorella_virus	4.2e-53	36.0
WP_099369089.1\|4956040_4957072_-\|transposase	IS630-like element ISAhy2 family transposase	NA	NA	NA	NA
WP_021140475.1\|4957663_4958983_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_021140474.1\|4958982_4959237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_034524237.1\|4960144_4960768_+	recombinase family protein	NA	NA	NA	NA
WP_003100847.1\|4963360_4963918_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|4963911_4964283_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|4964279_4964780_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|4964776_4965103_-	hypothetical protein	NA	NA	NA	NA
WP_003465043.1\|4965357_4965714_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003100872.1\|4965950_4966337_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001247892.1\|4966333_4966624_-	nucleotidyltransferase	NA	NA	NA	NA
WP_001173919.1\|4966758_4967334_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.6e-46	52.7
WP_021140470.1\|4967460_4967889_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_004099027.1\|4968488_4968977_+	DUF417 family protein	NA	NA	NA	NA
WP_004357657.1\|4969035_4969218_+	hypothetical protein	NA	NA	NA	NA
WP_026227539.1\|4969453_4970029_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004357654.1\|4970425_4971451_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_025760400.1\|4971450_4972044_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_004357650.1\|4972046_4973279_-	OsmC family protein	NA	NA	NA	NA
WP_018716209.1\|4973423_4974383_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004099035.1\|4974529_4974973_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_004099036.1\|4974974_4975514_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_004099038.1\|4975646_4976351_+	glutathione S-transferase	NA	NA	NA	NA
WP_011191347.1\|4976347_4977316_+	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_004099040.1\|4977407_4977980_+	hypothetical protein	NA	NA	NA	NA
WP_004099042.1\|4978067_4978517_+	hypothetical protein	NA	NA	NA	NA
WP_004099044.1\|4978623_4979025_+	hypothetical protein	NA	NA	NA	NA
WP_004357638.1\|4979055_4980327_-	MFS transporter	NA	NA	NA	NA
WP_004357637.1\|4980314_4980827_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_011191345.1\|4980830_4981301_-	hypothetical protein	NA	NA	NA	NA
WP_011191344.1\|4981452_4981743_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_004357630.1\|4981805_4982237_-	heme-binding protein	NA	NA	NA	NA
WP_011191343.1\|4982310_4983321_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_011191342.1\|4983930_4985199_-\|transposase	IS4-like element ISApu1 family transposase	NA	NA	NA	NA
WP_004099020.1\|4985516_4985888_-	hypothetical protein	NA	NA	NA	NA
WP_011191341.1\|4986044_4987319_+\|transposase	IS4-like element ISApu2 family transposase	NA	NA	NA	NA
WP_060415506.1\|4987299_4990227_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	99.4
WP_001161490.1\|4990230_4990791_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001323888.1\|4990779_4990947_+	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
WP_004574805.1\|4991077_4991644_-	OsmC family protein	NA	NA	NA	NA
WP_004574804.1\|4991658_4992435_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	2.0e-14	28.2
WP_004574803.1\|4992494_4993079_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004574802.1\|4993075_4993756_-	cupin	NA	NA	NA	NA
WP_021140980.1\|4994151_4996617_+	DEAD/DEAH box helicase family protein	A0A2I5ARD8	Synechococcus_phage	1.5e-10	24.6
WP_021140979.1\|4996737_4998240_+	type I restriction-modification system subunit M	J7I0U9	Acinetobacter_phage	9.8e-34	28.0
WP_021140978.1\|4998239_4999988_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_021140977.1\|5000115_5001102_+	hypothetical protein	NA	NA	NA	NA
WP_139723422.1\|5001158_5001452_-	hypothetical protein	NA	NA	NA	NA
WP_001310555.1\|5001450_5002467_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022426

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection