CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016808	Paenibacillus sp. BIHB4019 chromosome, complete genome	14 crisprs	csa3,WYL,cas2,cas1,cas4,cas7,cas5,cas3,DEDDh,DinG,cas8c	0	29	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016808_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_1

99314-99953

Orphan

Consensus_repeat	Method
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	PILER-CR
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACTCCNTACGGAGTGCGAC	CRT

9 spacers

WYL

The CRISPR arrays of NZ_CP016808_1

>merge|NZ_CP016808|1|99314-99953|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCACTCCATACGGAGTGCGACGTATCAACACCTATAGATGATCCAACAGAAATGCAGTTTCAATCCACGCACTCCATACGGAGTGCGACTATGAGTATGTAGCACGCGTCATTTATAATCAAAGTTTCAATCCACGCACTCCATACGGAGTGCGACGCTTCCGTTCAGCAGTAATTGCCCTTTCTACAGCATGTTTCAATCCACGCACTCCATACGGAGTGCGACGCAATTTATGATGTAGATTACCTGAGAGCGAGGTGTTTCAATCCACGCACTCCATACGGAGTGCGACTCGACATGGCTAATACGCGTCTCAATGCGGAAAGGGTTTCAATCCACGCACTCCGTACGGAGTGCGACGTTGGTTGCCGATTGCGCGAGCGTAGCCAGAGTAGTTTCAATCCACGCACTCCGTACGGAGTGCGACTTGTCCCGTATAGGGACGATTGTCGCAACTGTGTTTCAATCCACGCACTCCGTACGGAGTGCGACGCTATGAGTCTTCAACTGCAAATTTTCCATTTTCAGTTTCAATCCACGCACTCCGTACGGAGTGCGACAAGTTAACTTTTTTCCGAGCCGGCATTGAGCTGCAGTTTCAATCCACGCACTCCGTACGGAGTGCGAC

>NZ_CP016808|1|1|99314-99953|PILER-CR
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GTATCAACACCTATAGATGATCCAACAGAAATGCA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	TATGAGTATGTAGCACGCGTCATTTATAATCAAA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GCTTCCGTTCAGCAGTAATTGCCCTTTCTACAGCAT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GCAATTTATGATGTAGATTACCTGAGAGCGAGGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	TCGACATGGCTAATACGCGTCTCAATGCGGAAAGG
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	GTTGGTTGCCGATTGCGCGAGCGTAGCCAGAGTA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	TTGTCCCGTATAGGGACGATTGTCGCAACTGT
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	GCTATGAGTCTTCAACTGCAAATTTTCCATTTTCA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	AAGTTAACTTTTTTCCGAGCCGGCATTGAGCTGCA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC

>NZ_CP016808|1|1|99314-99953|CRISPRCasFinder
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GTATCAACACCTATAGATGATCCAACAGAAATGCA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	TATGAGTATGTAGCACGCGTCATTTATAATCAAA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GCTTCCGTTCAGCAGTAATTGCCCTTTCTACAGCAT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GCAATTTATGATGTAGATTACCTGAGAGCGAGGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	TCGACATGGCTAATACGCGTCTCAATGCGGAAAGG
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	GTTGGTTGCCGATTGCGCGAGCGTAGCCAGAGTA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	TTGTCCCGTATAGGGACGATTGTCGCAACTGT
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	GCTATGAGTCTTCAACTGCAAATTTTCCATTTTCA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	AAGTTAACTTTTTTCCGAGCCGGCATTGAGCTGCA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC

>NZ_CP016808|1|1|99314-99953|CRT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GTATCAACACCTATAGATGATCCAACAGAAATGCA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	TATGAGTATGTAGCACGCGTCATTTATAATCAAA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GCTTCCGTTCAGCAGTAATTGCCCTTTCTACAGCAT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	GCAATTTATGATGTAGATTACCTGAGAGCGAGGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	TCGACATGGCTAATACGCGTCTCAATGCGGAAAGG
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	GTTGGTTGCCGATTGCGCGAGCGTAGCCAGAGTA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	TTGTCCCGTATAGGGACGATTGTCGCAACTGT
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	GCTATGAGTCTTCAACTGCAAATTTTCCATTTTCA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	AAGTTAACTTTTTTCCGAGCCGGCATTGAGCTGCA
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_056040111.1\|109900_110227_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|372995
NZ_CP016808.1\|WP_099516538.1\|94714_94903_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP016808.1\|WP_099516544.1\|103743_104865_-\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259816
NZ_CP016808.1\|WP_099521370.1\|90573_91200_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370001
NZ_CP016808.1\|WP_099521371.1\|95619_97074_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP016808.1\|WP_099516547.1\|108455_109304_+\|WYL-domain-containing-protein	unknown	unknown	gnl\|CDD\|379100
NZ_CP016808.1\|WP_099516534.1\|89365_90535_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP016808.1\|WP_099516536.1\|93376_94159_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_056039706.1\|92822_93380_-\|DUF1273-domain-containing-protein	unknown	unknown	gnl\|CDD\|237461
NZ_CP016808.1\|WP_099516540.1\|97375_99175_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293759
NZ_CP016808.1\|WP_172455690.1\|105472_106906_-\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP016808.1\|WP_099516545.1\|104885_105167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516539.1\|94992_95577_-\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|378464
NZ_CP016808.1\|WP_099516541.1\|100180_100756_-\|RNA-2'-phosphotransferase	unknown	unknown	gnl\|CDD\|179136
NZ_CP016808.1\|WP_056039670.1\|109409_109802_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP016808.1\|WP_099516543.1\|102236_103028_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|313370
NZ_CP016808.1\|WP_150131489.1\|94275_94488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275319
NZ_CP016808.1\|WP_099516542.1\|100759_102178_-\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP016808.1\|WP_172455344.1\|91523_92765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP016808.1\|WP_099516546.1\|107149_108469_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_056040111.1\|109900_110227_-\|HNH-endonuclease	gnl\|CDD\|372995	pfam14279, HNH_5, HNH endonuclease. This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.	5.28307e-08
NZ_CP016808.1\|WP_099516538.1\|94714_94903_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	4.18905e-09
NZ_CP016808.1\|WP_099516544.1\|103743_104865_-\|slipin-family-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	1.72081e-105
NZ_CP016808.1\|WP_099521370.1\|90573_91200_-\|hypothetical-protein	gnl\|CDD\|370001	pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.	0.0070004
NZ_CP016808.1\|WP_099521371.1\|95619_97074_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.22863e-72
NZ_CP016808.1\|WP_099516547.1\|108455_109304_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	6.33951e-07
NZ_CP016808.1\|WP_099516534.1\|89365_90535_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	1.58607e-18
NZ_CP016808.1\|WP_099516546.1\|107149_108469_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	8.57455e-26
NZ_CP016808.1\|WP_056039706.1\|92822_93380_-\|DUF1273-domain-containing-protein	gnl\|CDD\|237461	PRK13660, PRK13660, hypothetical protein; Provisional.	2.30559e-80
NZ_CP016808.1\|WP_099516540.1\|97375_99175_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293759	cd16035, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	7.83386e-56
NZ_CP016808.1\|WP_172455690.1\|105472_106906_-\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	1.01255e-139
NZ_CP016808.1\|WP_099516539.1\|94992_95577_-\|GerMN-domain-containing-protein	gnl\|CDD\|378464	pfam10646, Germane, Sporulation and spore germination. The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.	7.14557e-13
NZ_CP016808.1\|WP_099516541.1\|100180_100756_-\|RNA-2'-phosphotransferase	gnl\|CDD\|179136	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed.	7.14694e-62
NZ_CP016808.1\|WP_056039670.1\|109409_109802_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	2.36434e-16
NZ_CP016808.1\|WP_099516543.1\|102236_103028_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.63773e-107
NZ_CP016808.1\|WP_150131489.1\|94275_94488_+\|hypothetical-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	0.000142786
NZ_CP016808.1\|WP_099516542.1\|100759_102178_-\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	6.71656e-134
NZ_CP016808.1\|WP_172455344.1\|91523_92765_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	4.38945e-14

>NZ_CP016808.1|WP_099516540.1|97375_99175_+|sulfatase-like-hydrolase/transferase
MNSQPLSRKKPNFLVILVDEERYPPFYENAEIKQWSRENLVAQQFLRKSHSMEFHRHYIGSAACCPSRATLMTGQYPSLHGVSQTTGIAKEPFDSDMFWLGSNTVPTLGNYFREAGYQTYYKGKWHFSYQDIIIPGTHQSVLSYSPENGMPDRAREELYLHANRMDDFGFSGWIGPEPHGRDPRNSGSSAAIGLSGRDIVYASEVVSLIQALAHEKERNDAAKPWLIVSSFVNPHDIVLYGALAAQLPTFNFDIGPMPPVAPAPTQNEPLDTKPRCQKSYQQIYPRALQPIINEPHYRKLYYHLQKQADMQMQKVLEALVQTSAYDDTIVIFTSDHGDLLGSHGRLHQKFYCAYEEMLHVPLIIHSKQLFPKPEPQLFNTLTSHVDLLPTMLGLAQANAGDIQSRLQKKFSEVHPFVGRDLSSFILGHNTSEPVESPIYFMIDDDVTRGQHQVNPIGIPFPSVVQPNHIETVIAPLYNDNNKQLWKYSRYYDNEQFWSEPGTRDVTFQPTASHAGSAASGSPSASNICYVAAIKTVPVAEEYELYNLTADPLETRNLAHPAFATEQTKRIQQQMAQLLDEQRQQKRIKPYLTGLSPDEL
>NZ_CP016808.1|WP_099521371.1|95619_97074_-|N-acetylmuramoyl-L-alanine-amidase
MKRLGFLMVLFMLLVAFPNDSFAAAVDTKVILDGTELVQPENTKAEIIDKKVMIPIRIVSESLGYDVLWNKQAQTVTISKEGTLIEMTVGQKAAKVNTAAIDIDAPPVMKKGTTLVPLRFVGEQMNLKVGWNNTTKTVTLTSPIPEVIDEEVGNDPVTPPPSETGGTIIDGAIPSGVSTVSAISFNDNRLIVTTSGKVGPKIFTMKAPDRLVIDLPNSAFAPSFGDGQALNGSQMGELVITDSSDVTKVRYSLFTREPSAIRIVLDLRQATSYQLVSDDSGLYVVDLNVDGDVGGAPIVPPISSDGKKIVVIDPGHGGVEPGKVALTGLQEKIINLALSLKVEQLLKQVPAINVVMTRKDDTTLSLSNRAKLANALNADLFVSLHANGYTTSTASGTETYYARDSSIPLAKTIHRYLVEATGLRDRGVKYGNYHVIRETTMPAVLLETGFMSNASDLAVITNETVEMRMAKGIVEGIKEYLGIK
>NZ_CP016808.1|WP_099516539.1|94992_95577_-|GerMN-domain-containing-protein
MNTKIAIAALLLIVMTTAGCADKSSAHSAQEVTLDAAQSKTVTAVTVVEPQQTAEAPVSAAEVKKRTIEVFFSDPQGEKLNKAGVQISFATPVEKYTEAFKALQQSDNAELIPLWSKEIELKSVHFKNGALTLDIHMPDTARLGSGSEILALDALTWTLFQFVEVKTIDLLVDGKQLESLMGHADLEHPITRGK
>NZ_CP016808.1|WP_099516538.1|94714_94903_-|CsbD-family-protein
MTASNNGLGDKIKGKANQVKGEIKDQIGKATNNESLQGEGKLDKAKGIAQEKIGELKNKISK
>NZ_CP016808.1|WP_150131489.1|94275_94488_+|hypothetical-protein
MMSIHNERPIDLPEPNPDKSPEIIPPNPPEILPEQPAPEIIPSTPAPEIEPVPAPNVETDFPTEMPPDHF
>NZ_CP016808.1|WP_099516536.1|93376_94159_-|hypothetical-protein
MDFTKLNSLTKYPSILTYHQLGERGRLNDTLTEGEAFDLDKPVYVYEKVDGENARMILLHNEAGTDYVIGSREELLYAKGDRIGNPYGNMAALLTPIAERMQASLADGKLGLTVIYQESYGGKTKAAKNYTSSGSQGYRVFDLFSLTHEELKHLLELPIDQIAKWRDHGGQPFYKEAEKAAFIERWSLDAAPLLAELGGAAFPVGLEETSRFLSDFAVTRVGMDAAGKSEGIIARTADRKMIRKIRFEDYERTFRNAPKA
>NZ_CP016808.1|WP_056039706.1|92822_93380_-|DUF1273-domain-containing-protein
MNNLLVSGYRAHELNIFNQKHEGIAYIKQAITNKLLPLIDDGLQWVITPGQYGVDLWACEAVIALKPQYPQLRLSIITAYSNPEEKWKDDKKEYYEQVLKGVDYYASVSDKPYDGIWQLQARDELLFRKTEGILLVYDEDAGEGSPRYFKERALRRQQADGYRYISISSDDIQSIADEANYRDMD
>NZ_CP016808.1|WP_172455344.1|91523_92765_-|hypothetical-protein
MDDQDDKKQQEQHSEKARPFDLEKSEPASQAVHVFRQPRESQQSLAAAQAAAQAAREEAAQRAEAARLAEAARQAEVARQSEAARQEEILRRAEAARQEELARQEEDARLLEATREQAALQKREGLEEEPGQRERYGEYGEYDAYGDDNSEYDAVDAEPAVTAASARNEAAGTAASVRNEAAGMAGAAGAGAGAGAGSGAAAKSAAAGAANKLLQNVSGSVKQIDMQVLLKLLKNPLEGLNLNPAKDLSYGIIGIVSAIIGFLLFGLLTGSAIQLFFGYGVSDLLREGSGMSAALFGKILLLSLISTIAFLGSLWGISLWRATQRLTLRAFITSIGAMQLASGSGFLIAGVVSLISFKLGLFVMAAALLSTLGISLVGASVASQVTKEKLWSYIVLSVCAYLLLFGLFGDLIL
>NZ_CP016808.1|WP_099521370.1|90573_91200_-|hypothetical-protein
MAGCSGQTEDFSTEVSQLKEQVSQLSAENEKLKAELAEAANTAAVSEASSEPAPEPSADAGSVLELKKALVIADFAEVTLTKTEFTSKVVPPKPDSFYNYYEIKDAENIYLDIVLKFKSLLSSSKGADEFADVQVKYDSKYEYKSFSTIEESGGGNFTYTNITNIEPLKTGVVHFIAELPKEAANDKKPIDIIVTIEGKEYVYSLRSE
>NZ_CP016808.1|WP_099516534.1|89365_90535_-|copper-amine-oxidase-N-terminal-domain-containing-protein
MKQKVITILLAMVMLLAIPTGLSAAKAESQTVFVNGKKIAYAQAPISENGTTLVSAKETIEALGLAFSWDKGNKRIIASSGEMTISIILNEPVATVNGISIFLGTPAVERNGRTMVPLRLLTDGLGASMETKGNQISIKTVDPSKSKYYTGLPLQITNSAVKNLGTEKIVVHYKEYYYAGGAVQTYDFTASLNARGKAAFNSATVKPGENYDSNGTNYIYFGRAIYSIETGEKETVSKSYNLAKQLYGNGGTIEKQMRALYKQKEDEYKKKLKEELKKNNNVPFKVVDYSITYDSLGYPEANIRLWNLTTKKIVSFELSFSTYDAYGDPVKGGYPYSNRYYGKVVNSSIGSGENPVYTWDLYGYEDTTKLKNIQIDRVAFSDGSVWKRK
>NZ_CP016808.1|WP_099516541.1|100180_100756_-|RNA-2'-phosphotransferase
MLTDKREKSLSKMMTKILRHAPEKFGIELDEADGSCLLNELLAAINRQPDWSSITEAHIRYVVERSSKQRFELADGRIRARYGHSVQKVSYPAAVPPEVLYHGTNEAVVAAILREGIQAMGRQYCHLSEGLDFAALAGSRRGKLAILAVDTQLAAELGVVFYYAGNEVWLAEEIPAACCRIYDLPIVTAKT
>NZ_CP016808.1|WP_099516542.1|100759_102178_-|RtcB-family-protein
MLHNYYQQVKLPSGQVHVYAGPELFAALDYKVFELANNNLQIPNQVYMGYTPDVHVGVGTCIGTTAVWNMEDGYVSPSIVGSDIGCGMRVHLTNLHKDELKDVKLRRKLVKAIEKYLPMEEHGRGHFSDIRLEHVVKKGLHGLPKKYIPDAYTPRKATSLTHVESSKFYVEGGALDLFPERVWHRSHRQLGTLGGGNHFAEIQAIEIPEENREIAEAWGLKDGQVVIMIHSGSRAWGGSVSQYCSSNMTKMMKAEGLGTADPKLVFAPLAHQLGKDYVELMYSALNYAVVNRHLIAYAIREAGKDVFGSKFEMSTLYDLMHNYAWEEEHDGHSYFVHRKGATRALPAQHPDNPEPYKETGHPALIPGSMGSSSYIMVGKPGGRDNYHSICHGAGRIRSRSASKRLITVEEFAASMRVGMEDEIVLNQRSLESMVDESPQAYKDVDQIIESVVGAGLAEVVAKCKPLATIKGA
>NZ_CP016808.1|WP_099516543.1|102236_103028_-|nucleotidyltransferase-domain-containing-protein
MSDYKAKIAAELRKIEAEERVRIVYACESGSRAWGFPSKDSDYDVRFIYVRETNWYLSIFEQRDVIERPISDMLDINGWDLKKALNLFRKSNPPLLEWLQSPIHYMEETTVAEQIREAAPANFSPRSSIYHYLHMAKGNFREYLQGDQVKIKKYFYVLRPVLACQWVEERGTVPPLSFEELVHELVPDSSLKREVLTLLERKKAGIELDLEPKISVINDFLARRIAYYEEVAKQAPASGQKQDQALDELFRSALREVWGPRAE
>NZ_CP016808.1|WP_099516544.1|103743_104865_-|slipin-family-protein
MTTAKFKNPLIIQDDERALLFRKGGYIKLLQPGKYRLSTWREETATVLNVTKRFQVTGKDADMFLHDQELLAQLTIVEVQDFEYVLHYVDGKFNSLLTAGKHIFWNVLKKHTFVHADIRQPEISKDINLAIMSKLNGYYQCVEVANYETAALFYNNVMQRELAPGKYYFWNGPTTVLVRKTDLRQQQLDLTGQEMMTEDKVTLRLNFVCQYKITDPIKVLMIKSFEDQVYIVLQLILREYVGTLRLDDLLKMKQEIAAFVLSRLNEKGDDYGVQFLSAGVKDIILPGDIKDIMNTVLIAEKKAQANLITRREETASTRSLLNTAKLMDENTTLYRLKELEFMEKICEKIGTISLSSGGNMLEQLNSLLSAKQE
>NZ_CP016808.1|WP_099516545.1|104885_105167_-|hypothetical-protein
MQQECSCRPIRRRCGTAMQSVDTEQGKRVYLAVSKAKDRPVEVERGRYASQSTAQIAALDGALKPDSALTAGSIPDCKNHNKSNDKSINLTFK
>NZ_CP016808.1|WP_172455690.1|105472_106906_-|RtcB-family-protein
MTKQVLEKMIQLKGTNHHELSLPNGKLHVYANDEVFASLEPNVYQMADNNLRIPRNQYMGYTPDAHIGVGTCIGTTAVWNMKDGFISPSIVGSDIGCGMRVHTTPLHKRDIQDKEVRRALIRAIEQYVPTHERTNTNYADIDIMSVVQDGLKGLPAQYVPNEQWLTHVEQAAFAFDHAALEHLPPRIMRNAHGQLGSLGNGNHFIEIQYLDINEEYSALAEKWGLFDGQVVVMIHSGSRSWGAAVGREYNKVIKEAMYQWGISNPDPNLVYAPIASREGQMYLNLMYSALNFAVSNRHMIAFGVQQAFRDVFGPEMQLPVLYDLMHNYALKEFHRKQPMLVHRKGATRALPPNHFLNTPAYKETGHPALIPGSMGTASYIMVGKDEGVKNFFSVCHGAGRARSRRATKELVTVDQFEQSLRVGSDDEILVNHRSLKDILDECPQAYKDVDQIIDSVVGASLAAVVAKCQPMAAIKGT
>NZ_CP016808.1|WP_099516546.1|107149_108469_+|WYL-domain-containing-protein
MAKESFDKEIQFLRMLVLTSGAYNRQQFADRLGISIHTFDKTIKKLKEIVNAVYQQLPEEQGKEFAETVRYSYFDSADPMLLFLFRAKSLKETESKRISLLLETLQSGSAMTAMELMDACCGNMPAELAPPDEKTVRSDLKYLEEVGVIRKEPGPRPYRYRLANELVQELTEEELLDLYDFADVMANTHVPSVQGYMLRDSLKKHLQRTQEDNVTLDAFLYKYHFYSRLLDEAHLFSLLAAIRERRKVKFLYFSPKNETSYASRNTNPLFERDTTGKEEVAIPIKVVYDHQYGRWYLLGFRSDKVIVKYRMEGMTQIEEGEAVPQEQFEQHMAQLEARTAQSWLIDTGRTVTVRARFFHPVGAPHNFIKERVLLQGQWGRIIEEAGADSFIYEIEVNGTFEIRPWLRSFGSSCEVLEPLRLRNEMIDEWKEIAGYYESV
>NZ_CP016808.1|WP_099516547.1|108455_109304_+|WYL-domain-containing-protein
MNPFEKIFNYQLMSRLEDSGTFMVTGNERSWLKAMLQHPEAVQAFAPGTLAKLESLLEQDSVMETAGPLIQKAASKELQVYHPLLRQLRRSIMHRNQIKLSYMIKNGRQHEHQAGVPYKLEYSMVKKEWYLLWYHQRHRTLMSTKLQTILAIQDMPCEPERYVQLSASIEALLTKRSTSAVIQVMETYNAELSRILYAFSCFEKVVSYDDQLNRYTIKLTFPSNEAEYVLSKIRFLGKRIKVNEGDYLLRRMREASSLALARYGASPDQQALQTDRLVQKTD
>NZ_CP016808.1|WP_056039670.1|109409_109802_+|DUF4190-domain-containing-protein
MNDYNNGHNYQNHAPFQPPFQPPVQKTNGAAIAALVCGITSFIPFIGILLGIVAVVMGIVSLNQIPKTREQGRGMAIAGLICGAISLFLSLLVFLLFIIGIMSYEDSMYNYGWNEGYYNASIQLVNALNL
>NZ_CP016808.1|WP_056040111.1|109900_110227_-|HNH-endonuclease
MRGKTDKGRQWYQEIELELAVILVNEHAAVVVNRRTIRRLFSNKDFRKYILTRDNYTCFFCKQYGDTIDHMLPRAKGGHTTPDNCVCACHMCNQSKADKNLEDFMREV

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Crispr_ID: NZ_CP016808_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_2

519726-520024

Orphan

Consensus_repeat	Method
GTTTCAATCCACGCACTCCACACGGAGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACTCCA	CRT
GTTTCAATCCACGCACTCCACACGGAGTGCGAC	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP016808_2

>merge|NZ_CP016808|2|519726-520024|CRISPRCasFinder,CRT,PILER-CR
ATTTCAATCTACGCACTCCATACGGAGTGCGACAACGTATTACAGAGGTGGGGGCGACGACATCGCATGTTTCAATCCATGCACTCCACACGGAGTGCGACTATGATAGCAGATTGTCATGGGGGCGTAAAGGAGTTTCTATCCACGCACTCCATACGGAGTGCGACGATCTACGCAAGCAAACCGAGGAGTTCTACAAAGTTTCAATCCACGCACTCCACACGGAGTGCGACTGCTGCAATATTTTAGTCGGGACGAATAAAGGCGTTTCAATCCACGCACTCCACACGGAGTGCGAC

>NZ_CP016808|2|2|519726-520024|CRISPRCasFinder
ATTTCAATCTACGCACTCCATACGGAGTGCGAC	AACGTATTACAGAGGTGGGGGCGACGACATCGCAT
GTTTCAATCCATGCACTCCACACGGAGTGCGAC	TATGATAGCAGATTGTCATGGGGGCGTAAAGGA
GTTTCTATCCACGCACTCCATACGGAGTGCGAC	GATCTACGCAAGCAAACCGAGGAGTTCTACAAA
GTTTCAATCCACGCACTCCACACGGAGTGCGAC	TGCTGCAATATTTTAGTCGGGACGAATAAAGGC
GTTTCAATCCACGCACTCCACACGGAGTGCGAC

>NZ_CP016808|2|2|519726-520011|CRT
ATTTCAATCTACGCACTCCA	TACGGAGTGCGACAACGTATTACAGAGGTGGGGGCGACGACATCGCAT
GTTTCAATCCATGCACTCCA	CACGGAGTGCGACTATGATAGCAGATTGTCATGGGGGCGTAAAGGA
GTTTCTATCCACGCACTCCA	TACGGAGTGCGACGATCTACGCAAGCAAACCGAGGAGTTCTACAAA
GTTTCAATCCACGCACTCCA	CACGGAGTGCGACTGCTGCAATATTTTAGTCGGGACGAATAAAGGC
GTTTCAATCCACGCACTCCA

>NZ_CP016808|2|2|519794-520024|PILER-CR
GTTTCAATCCATGCACTCCACACGGAGTGCGAC	TATGATAGCAGATTGTCATGGGGGCGTAAAGGA
GTTTCTATCCACGCACTCCATACGGAGTGCGAC	GATCTACGCAAGCAAACCGAGGAGTTCTACAAA
GTTTCAATCCACGCACTCCACACGGAGTGCGAC	TGCTGCAATATTTTAGTCGGGACGAATAAAGGC
GTTTCAATCCACGCACTCCACACGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099516832.1\|516172_517381_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP016808.1\|WP_099516842.1\|528907_530107_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP016808.1\|WP_099516839.1\|525722_526847_-\|response-regulator	unknown	unknown	gnl\|CDD\|226456
NZ_CP016808.1\|WP_099521409.1\|511042_511777_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226663
NZ_CP016808.1\|WP_099516829.1\|512541_513459_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP016808.1\|WP_099521408.1\|510112_510874_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|237218
NZ_CP016808.1\|WP_099516828.1\|511786_512545_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
NZ_CP016808.1\|WP_099516835.1\|518878_519568_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP016808.1\|WP_099516838.1\|524001_524430_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP016808.1\|WP_099516833.1\|517377_518070_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP016808.1\|WP_099516834.1\|518401_518875_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP016808.1\|WP_099516837.1\|521868_523911_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP016808.1\|WP_099516841.1\|528051_528609_-\|GbsR/MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224427
NZ_CP016808.1\|WP_099516840.1\|526821_527871_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP016808.1\|WP_099516836.1\|520244_521834_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP016808.1\|WP_099521410.1\|524450_525539_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP016808.1\|WP_099516830.1\|513614_514328_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP016808.1\|WP_099516831.1\|514327_515716_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP016808.1\|WP_099521411.1\|531034_531874_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP016808.1\|WP_099516843.1\|530103_530940_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099516832.1\|516172_517381_-\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.70838e-139
NZ_CP016808.1\|WP_099516842.1\|528907_530107_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_CP016808.1\|WP_099516839.1\|525722_526847_-\|response-regulator	gnl\|CDD\|226456	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].	2.97505e-42
NZ_CP016808.1\|WP_099521409.1\|511042_511777_-\|ABC-transporter-permease	gnl\|CDD\|226663	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown].	8.69257e-22
NZ_CP016808.1\|WP_099516829.1\|512541_513459_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.69604e-94
NZ_CP016808.1\|WP_099521408.1\|510112_510874_-\|SDR-family-oxidoreductase	gnl\|CDD\|237218	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	2.65997e-68
NZ_CP016808.1\|WP_099516828.1\|511786_512545_-\|ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.11774e-14
NZ_CP016808.1\|WP_099516835.1\|518878_519568_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	3.57645e-06
NZ_CP016808.1\|WP_099516838.1\|524001_524430_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	3.89823e-39
NZ_CP016808.1\|WP_099516833.1\|517377_518070_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.56607e-43
NZ_CP016808.1\|WP_099516834.1\|518401_518875_+\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	3.74133e-08
NZ_CP016808.1\|WP_099516837.1\|521868_523911_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP016808.1\|WP_099516841.1\|528051_528609_-\|GbsR/MarR-family-transcriptional-regulator	gnl\|CDD\|224427	COG1510, COG1510, Predicted transcriptional regulators [Transcription].	1.19907e-40
NZ_CP016808.1\|WP_099516840.1\|526821_527871_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	5.57024e-45
NZ_CP016808.1\|WP_099516836.1\|520244_521834_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.34261e-64
NZ_CP016808.1\|WP_099521410.1\|524450_525539_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	6.09241e-150
NZ_CP016808.1\|WP_099516830.1\|513614_514328_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.24771e-72
NZ_CP016808.1\|WP_099516831.1\|514327_515716_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.39928e-37
NZ_CP016808.1\|WP_099521411.1\|531034_531874_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.16545e-131
NZ_CP016808.1\|WP_099516843.1\|530103_530940_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	1.3937e-127

>NZ_CP016808.1|WP_099516835.1|518878_519568_+|AIM24-family-protein
MKATSPAPIGHVKVTLQEADKLHVLHPGAIIAYQGAPQQREDRFMNLAGVYRKKKWVRALLSGPSEFIIGLPPGCSLETIPIGPESDLLFDYRHVLYFTDGMQLKSVIQKMKNVWITRELVRMRFSGPGDLGVITSGDIAVLQLDKERPLFVNTSSLVAYPANASIQLAVYGNQLASQNMNVQWKITGSGPVLIQTGSHGKDLEHPLQNDGFFKRLLREVLPFGSVYIK
>NZ_CP016808.1|WP_099516834.1|518401_518875_+|hypothetical-protein
MPKAPFLVSTLLFMSLLFLLLPHKVAEASMWSNIKGIFSAPEKIDALEQQYMDAKQQLDAQKEQLTESLQSAEQYAARQEELMQQNEQFRKTNEQLMEQNNALIQEMEQIKQKQASFTQKLINTALIIMSLIFAYILSLRVWRYLVWRKQKHAGRGV
>NZ_CP016808.1|WP_099516833.1|517377_518070_-|FadR-family-transcriptional-regulator
MLQKTNRLTLVEQVALQMERQIESGKWAVGMRIPAEPELMVELNVSRNTLREAVRALIHAGLLKTKQGDGTYVSSSSALGVVLQKRIMRSDTLQTLEVRHALEREGAHLAAQRRTDEEARELLLQLERWEGAAARGDMDAIVTEDIRLHQGIIAASHNEILIELYNHIADASQDSITSLTRYEADGDFVEMHRQLVQAIVDQDADRAVATVHRYIAESKAVLEVKGGERP
>NZ_CP016808.1|WP_099516832.1|516172_517381_-|MFS-transporter
MSVTSDTKPMMAKKSLSLGWPIILGIVLIALTMRSPLTSVGPLVGSIRESLGLSNAAAGLLTTLPLLAFALLSPFAPFLARRFGAERTLLYALVLLMAGIAIRSLSATVSLFAGTALIGLAIAVCNVLIPSLVKRNFAHQVGLMTGVYSVSMNLCGAIASGVSVPVARDLGFGWNGALGIWGILVLLAALFWLPQARASRAAVGAATSGASKRGSLWRSPLAWMVTIFMGMQSLLFYVLIAWMPEIMSSRGLNEDSGGLLLSLFQMAALPVAFIVPIVAGRMKNQRLLVIIMSVLLFVSLGGLYFGGNAFISLWTVLLGIGGGCAFSLAMIFLSLRTKDAFDSAALSGMSQSVGYLLAATGPILFGLLHDITASWKPPLLLLLVVSALLLLSGLGASRNRTV
>NZ_CP016808.1|WP_099516831.1|514327_515716_+|HAMP-domain-containing-histidine-kinase
MGGTVRILKRFIGATMLISLSLLMLNFLLLLIWVSTGTVEGSSPAAVVRHTAEGLKAANNGYVLEAETAARLDSQQVWAMLISSAGQVTWGHSLPEELPAHYSLTDVAKLSMSYLMDYPVFVWEHADGLIVIGYPKDSLVKYQHILPTDWVKNLPLRALLLLIGNLVLVLIAALLIGSRLLLSIRPLTQGIQALAADQEVQLEPKGMLADLAQSVNHASSLLHQKNASLKSRDEARSNWIAGISHDIRTPLSMVLGYASELEEHQEIPPLQRKHAGIIRYQAEKLRTLVSDLNLVSMLEYEMQPLTPKALRLAALTRQVASDIINAGLEPSFTLEMDDINETAQIYGDERLLLRAMTNLVHNAIRHNPQGCEIRLRAELADDKHTCRFIVLDNGRGIPPEELADVLELPFSANRKYARPSGHGLGLPMACRIAKAHHGRLTLTNGPGAGLTAELELPCLEAG
>NZ_CP016808.1|WP_099516830.1|513614_514328_+|response-regulator-transcription-factor
MEDLKHKKLLIVDDESDLREMVEGFLRKEGFTRIFQAATCAEALRTVRSAKPDLVLLDIMLPDGDGFSLLKSLRQFSSVPVFYLSARGEDEDRLLGLGLGADDYMVKPFLPRELLLRLSAILRRVYAPFRQEQRPIFQLGPHVIDLESGVVRTSSDDDSLTAKELVLLTKFYENRNRIVTNDALCQAAWSDDYYGYENTLMVHIRRIREKIEELPSNPEHLLTVRGLGYKLLVKEEI
>NZ_CP016808.1|WP_099516829.1|512541_513459_-|ABC-transporter-ATP-binding-protein
MTMQAIVSTRGLSKRYGSSYSVEKLDLMVEEGEIYGFLGPNGAGKSTTLKMILGLAQPTEGSVTVFGKELAKHRRLILSQTGSLIESPSYYGHLTGLENMRVVQRLRNVPGSHVREALRIVRLEQQQHKKVSQYSLGMKQRLGIAMALLASPKLLVLDEPTNGLDPAGIGEIRELIKSLPQRLGMTVLISSHLLSEIEQIATSVGIIHQGKMLFQGKLDQLRNESQPTIAFKTSQNPMAHSLLAAQGFTPILQDGFLRLRHLADAQIAQINRELLAEDIDVLRIEEHKKSLESLFLELTGKERSL
>NZ_CP016808.1|WP_099516828.1|511786_512545_-|ABC-transporter-permease
MIRSIWLEGYKLRRRYVGLTVLLVMGVEMGWAFMATSMSIARNPDQASWEPLIAMTASLNGLFAPILAAICVSRICDMEHKGNTWKLLLSMSVKRERLYAAKYGCVALILLLACFVQVLALIGFGKINGFEEAVPIMLLGRLLAGTMAAHLAVIALQQWLSMALKNQAFALCLGMLGGFIGMAADLFPSAIRPLFIWSYYSGLSPVAQSYTDNQLEFIARDLGAGLPMLGLLLFMGLLIYGAGRLHISRQEV
>NZ_CP016808.1|WP_099521409.1|511042_511777_-|ABC-transporter-permease
MLKRAVPAEWLKLRHSHLWIVLIALPIVSVLMGCGNFYMNQGVLQNGWYSLWSQAGLFYGEFFLPVLIAICCAYLCRLEHSGKNWNMLLTAPIPVASIFWAKLFTAGMLTAFVQVVFVLLYIIGGTMVGLSLSELPGELYGWLVRGWLAAVTISSFQLLLSMRIRSFAVPVGIGLGAAFLGLGMYVAKAGLFFPHSLLTIGMGVLSPESLPPQQQLTVVIVNLFYIAAFSAGAIYRMRTADVSA
>NZ_CP016808.1|WP_099521408.1|510112_510874_-|SDR-family-oxidoreductase
MQLDLTGKTALVTGATGDLGRVMVRTLADCGADIVIHYRSNEDKALELKQEVEALGRRAITVQADITKQGDVDKLQAEAAASLGHVDIVVANAVIQYQWESVLKQPVEDYESQFESCVMQSVYLAKAFVPAMVERGGGRFIGINTECAMQNAPGQSAYVAGKRGMDGVYRVLAKEVGESGITVNQVAPGWTISDRDRAAGSERNEGYEKNVPLKRRGSDQEIANTVAFLASELSSFITGAYVPVNGGNVMPAI
>NZ_CP016808.1|WP_099516836.1|520244_521834_-|methyl-accepting-chemotaxis-protein
MKWFNNLKISVKLISAFLIVAIILGVVGLFGIYNLGKMNTSQDDMYFNNLIPVKEAYEAQVNYTRLRVQIRNLYLHDTDQQKQAELATIKETTALVDQAVDKYKATDLSVTAQKIIDSYDVEWKTYQDVYARAIEIGSSGNEAAFKGFINNELKTQGDIVFNLLKESIELSILEADQANQRGEETYNSALTITIIMVVLAFLLSIVFGIVLARMISKPLGRIVVLAKNVADGDLREKVNIDSTDEVGKLASSFNHMIDRLNGTVSGIIESSHNVAAAAEQISAATEEIAGGSTAQATAAQTIHELFSELKMAIQSVAQSTEQASELSDSAMKIAREGRTIIDDSVKSMNGVREQMSQLEQDSHQVGDIIEVIEDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSGEATKKITVIIQGMQQNTKRSVNAVEESAALSEKTGEAFERITKMVNDTGHRVSEIAAASEEQAAQAANVLTTVENVSAAAEESAASSEESAATAQSLAQLADDLQHTVSSFKTA
>NZ_CP016808.1|WP_099516837.1|521868_523911_-|chemotaxis-protein-CheA
MFDNSEFRQVFLEELEEQIMTMEEEILSLEKQGSHSEGIQRLFRAAHTIKGSSAAMGYMELKQLTHEWEHLLDMLRNEELTMTRELTNLFFQCLDFIKDLQNSIIQEVLLPDPTAMIKELERFSKANAGSAASKQEAAVEALPEDAEQALQASIHNGQAVFLITVRLTEDCMMKLARISIIDLSLRALGEVLWSEPNLKLVQDDRDIHAIRWLIAGDAEPNALEQAVAGLMDVQSVRVEKAEPSQQKFAAAAATEEQLLEFAASSASSPETDEADKPQQARAAAKQQTIRVNVERLENVLDLLGELVIDQTRLKQAIQTLHQVHGHSETMDDLGEISDHLSRLIGSLQENVMKVRMLPIEQLFNRFPRMVRDLAQTLHKQVDLQMIGGDTELDRTLIEEVGDPMIHLIRNAVDHGIEMPEERLKRGKSEQGMVRISAAHEDNQVVVVVEDDGGGIDTGKLRKSAVAKGVISEEEAAMMDEHKALRLIFHPGFSTASQLSDVSGRGVGMDIVRTDIERLGGIIDIDTTVGVGTKFTIRLPLTLAITTGLLVKASDQTFILPMSAVVEIIRVDTSTLKMIKGSPVIKIRNQIVPFIWLHEMFGYERQEGGPDKIPVVMIGRAEQRLAIAVDQLLGNQEVVIKTLGSYVGKVDGISGATILGNGRIALILEIGGIMKKASGLI
>NZ_CP016808.1|WP_099516838.1|524001_524430_-|purine-binding-chemotaxis-protein-CheW
MQGVDQMQYVQFSVGEESYGIRIAEVHEIIRMQDITEIPNCQFYVKGVINLRGKIIPVISLRSLFSLDEDVYSKATRIVVVHHQEESIGIIVDRVHKVTTFQDIQPPPERVGGINGAYFTGIGLTESELVGILKIDEVLLRD
>NZ_CP016808.1|WP_099521410.1|524450_525539_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MKMHRILVADDSSFMRHLIKRYVEEDPEIQVVGEAKNGEEAIAETLRLRPDVITMDVEMPGMDGLTALSEIMARRPTPVIMLSSFQKFGDAEIVMALQRGAVDFVAKPSGELSADLYKVKSELCEKIKNAAGAPIKRLLKLAGLTQAEAPPQPLSLLPLLRNARLRTASVVNELVAIGTSTGGPQALTVLLKGLPASFPHPIVIVQHMPAPFTASLAHRLDAVSALKVVEAKNGQQLANGTVFIAPGDSHMNVEEKEGSYWIKLHQKPIAGLHRPSVDELFRSIMALGRLKRHLVLLTGMGSDGAEQMLRARNAGQAATTIAESKETCIVYGMPRAAVERGIVDYVLPIEQISKKLLEIISG
>NZ_CP016808.1|WP_099516839.1|525722_526847_-|response-regulator
MLNVAVVDDEYWALEEMKEYLSNCEGVGSIMLYDDPLEGLTAIKREPPDIVFIDIMMPTVSGLVFAEELLASCPETAAVFVTAFDDFALKAYELNVEDYLLKPVAPERVKRSIERLLRRRKGRGTLTAHAAVQRDQIDVQCFGKLSLHGAGGPVKWKVSKTKELFAYLWTNRECKVGDIFEDVFPGMDESKARAYLHTCIYQLRQILRCNGLDGKIRIESLRETYKLTAGDLSSDMLRFQQLAKRAVDTGSLILLRQAAALYTEEVLTDIPGVWVYQLREHYRLIGALVIERLVEGLLVQGEVYSATEYALGYLNKEPYDEGALWLVVRCYMRGGNRMKANLVFTQFCKRSAGEMGVYSQAELIGRYESLVQAT
>NZ_CP016808.1|WP_099516840.1|526821_527871_-|histidine-kinase
MLHALLVHDCVTERAIITDVFTEQHIQISAESRLEAALLWFEHGGEADLCVIDASLAEEAVALCRAIREAAVRKDLYIILLLDLEGRGQLESLYEAGMNDYLLRPFAAAELKQKLDMLLQLKRFEAGLVETELAMLRAKIKPHFLFNAIGTIIFISKRNAEEARTLLRSLSEFLRGSFDFENKADVVSFKVELALVNAYLNLEKARFGSRLHVNYNLKATQFYLPPFILQTLVENAIRHGLTARLIGGTIDIGTLLVPAGVRVTIKDDGVGIREEELERFAQVKQHSEYRRMAARGQRQGMGLANTNERLLRHFGTGLQIRRRKSGGTTVSFLIPAQGGLVNAERCGGG
>NZ_CP016808.1|WP_099516841.1|528051_528609_-|GbsR/MarR-family-transcriptional-regulator
MDELAALTEEQQQQLLKTRRRVIESIGKNMDLYGITLSIGHLYGNMYFNREPVTLDEMSATMGMSKTSMSTGMRTLYDLKMINKVWGKGSRKDLYEVVPDWHENFTDFFSIKWRKAAEQNVLALTRSLKEIEQLEENTEQSEAFLEVLASDRQKLQEALAYYKWLGRLIDAFESGEIYKLIPKEE
>NZ_CP016808.1|WP_099516842.1|528907_530107_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MAIIEAKKLTKIFGADPKKAIPLLDKGWSKEKILKETKLTVGVNQANFSIEAGQIFVIMGLSGSGKSTLVRLLNRLIEPTGGQVLFNGKDVLKMTAEQLRQFRRKHVGMVFQKFALFPHRTVLQNIEYGLEVQGIHKSKRREMAIQSLELVGLKGYGDSYPEQLSGGMQQRVGLARGLASDPEVLLMDEAFSALDPLIRKDMQDELLELQSKMKKTIVFITHDLNEALRIGDQIALMKDGSIVQIGSPEEILMQPANKYVERFVEDVDLSKVLTASHVMAKAETITNERGPRVALQLMRARSISSLYMVDREMRLLGVITADDAAKALKEGLSLESLTQRDVPTVSPDTLLNELFELMGNARLPVAVIGENSRLKGIVIKGAVLAALAGNTEIEAGVKA
>NZ_CP016808.1|WP_099516843.1|530103_530940_+|proline/glycine-betaine-ABC-transporter-permease
MNIPKIPLADWIGALETWLETHLGPLFKLIKVVVGETVGGLNAVLDFFPAIVLIILFTAAAWFLGKWRMALFTFIGLLIIDNLGYWSQTMQTLSLVLTSALISVVVGVPVGILCARKNSIQNIVTPILDFMQTMPAFVYLLPAVSFFSLGVVPGVIASIIFAIPPTIRMTNLGIRQVPEELTEAADAFGSTPSQKLIKLQLPIALPSIMAGINQTIMLSLSMVVIASMIGAQGVGSYVYRAVTQGNTGVGFEAGIAIVILAIILDRLTQNAIRRTKKA
>NZ_CP016808.1|WP_099521411.1|531034_531874_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MLVAAVLLAVLAAGCSSASGSKNITLAYVAWDSEIASTYVVKEVLEQKLGYKVEMLQVDAGPMWAGVSDGSADGIVAAWLPSTHASYADKYKGQYEDLGANLEGTKTGLVVPKYMDINSIEDLNDKTGPELDYKIIGIEPGAGLMMASEKALDEYGLRDKWTLLESSSAAMSQELQKAYDNKEPIVVTGWTPHWMFAKMDLKYLDDPKNVYGGAEQIHTIVRKGLKEDKAEAYAFLDKFNWTPDDMAKVMVAIQGGETPEAAAKAWVEGNAELVDAWLK

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Crispr_ID: NZ_CP016808_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_3

644287-644657

Orphan

Consensus_repeat	Method
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	PILER-CR
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCACTCCGTATGGAGTGCGTGGATTGAAACN	CRT

5 spacers

WYL

The CRISPR arrays of NZ_CP016808_3

>merge|NZ_CP016808|3|644287-644657|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAACCAGTGTACGCAGCTCGCCGGCAATAAGATCCGACCGTCGCACTCCGTATGGAGTGCGTGGATTGAAACTATAGTGTCTTGGAATGACGGTATTTCAGCGTTAGGTCGCACTCCGTATGGAGTGCGTGGATTGAAACATATCCTCGCTGGCTCCGGCAGTCTTGCCAAGCTCGTCGCACTCCGTATGGAGTGCGTGGATTGAAACTGGACAATCTCCTCGGCCTCAGTTTCGGGCGCGAAGTCGCACTCCGTATGGAGTGCGTGGATTGAAACAATGTTGTCGTCATATTTATAATCTCCTTTTTAGTCGCACTCCGCATGGGTGCATGAATTGAAACA

>NZ_CP016808|3|3|644287-644591|PILER-CR
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CAGTGTACGCAGCTCGCCGGCAATAAGATCCGACC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TATAGTGTCTTGGAATGACGGTATTTCAGCGTTAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	ATATCCTCGCTGGCTCCGGCAGTCTTGCCAAGCTC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TGGACAATCTCCTCGGCCTCAGTTTCGGGCGCGAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC

>NZ_CP016808|3|3|644287-644591|CRISPRCasFinder
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CAGTGTACGCAGCTCGCCGGCAATAAGATCCGACC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TATAGTGTCTTGGAATGACGGTATTTCAGCGTTAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	ATATCCTCGCTGGCTCCGGCAGTCTTGCCAAGCTC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TGGACAATCTCCTCGGCCTCAGTTTCGGGCGCGAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC

>NZ_CP016808|3|3|644287-644657|CRT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CAGTGTACGCAGCTCGCCGGCAATAAGATCCGACC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TATAGTGTCTTGGAATGACGGTATTTCAGCGTTAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	ATATCCTCGCTGGCTCCGGCAGTCTTGCCAAGCTC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TGGACAATCTCCTCGGCCTCAGTTTCGGGCGCGAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	AATGTTGTCGTCATATTTATAATCTCCTTTTTA
GTCGCACTCCGCATGGGTGCATGAATTGAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_172455694.1\|635704_637084_-\|arabinan-endo-1,5-alpha-L-arabinosidase	unknown	unknown	gnl\|CDD\|350112
NZ_CP016808.1\|WP_099516912.1\|633052_634201_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340893
NZ_CP016808.1\|WP_099516913.1\|634314_635160_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP016808.1\|WP_099516924.1\|650171_650981_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|273523
NZ_CP016808.1\|WP_172455372.1\|644746_645439_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_CP016808.1\|WP_099516920.1\|645708_646626_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP016808.1\|WP_099521419.1\|647853_648423_+\|YdeI/OmpD-associated-family-protein	unknown	unknown	gnl\|CDD\|379149
NZ_CP016808.1\|WP_099516916.1\|637989_638880_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP016808.1\|WP_099516918.1\|643289_643931_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NZ_CP016808.1\|WP_099516911.1\|632264_632972_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131944
NZ_CP016808.1\|WP_099521417.1\|639011_640337_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP016808.1\|WP_099516922.1\|647355_647772_+\|DUF1761-domain-containing-protein	unknown	unknown	gnl\|CDD\|369962
NZ_CP016808.1\|WP_099521418.1\|640647_641622_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|226449
NZ_CP016808.1\|WP_099516926.1\|652874_653828_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP016808.1\|WP_099516927.1\|653905_654802_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578
NZ_CP016808.1\|WP_099516915.1\|637113_637956_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016808.1\|WP_099521420.1\|652060_652810_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|224406
NZ_CP016808.1\|WP_099516917.1\|641829_642762_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226652
NZ_CP016808.1\|WP_099516925.1\|651095_651869_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NZ_CP016808.1\|WP_099516923.1\|648682_650170_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236407

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_172455694.1\|635704_637084_-\|arabinan-endo-1,5-alpha-L-arabinosidase	gnl\|CDD\|350112	cd08998, GH43_Arb43a-like, Glycosyl hydrolase family 43 protein such as Bacillus subtilis subsp. subtilis str. 168 endo-alpha-1,5-L-arabinanase Arb43A. This glycosyl hydrolase family 43 (GH43) subgroup belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. Many of these enzymes such as the Bacillus subtilis arabinanase Abn2, that hydrolyzes sugar beet arabinan (branched), linear alpha-1,5-L-arabinan and pectin, are different from other arabinases; they are organized into two different domains with a divalent metal cluster close to the catalytic residues to guarantee the correct protonation state of the catalytic residues and consequently the enzyme activity. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	1.32961e-129
NZ_CP016808.1\|WP_099516912.1\|633052_634201_-\|MFS-transporter	gnl\|CDD\|340893	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6. Human Major facilitator superfamily domain-containing protein 6 (MFSD6) is also called macrophage MHC class I receptor 2 homolog (MMR2). It has been postulated as a possible receptor for human leukocyte antigen (HLA)-B62. MFSD6 is conserved through evolution and appeared before bilateral animals. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.31349e-55
NZ_CP016808.1\|WP_099516913.1\|634314_635160_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	3.44156e-55
NZ_CP016808.1\|WP_099516924.1\|650171_650981_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|273523	TIGR01251, Ribose-phosphate_pyrophosphokinase, ribose-phosphate pyrophosphokinase. Alternate name: phosphoribosylpyrophosphate synthetase In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	6.05684e-18
NZ_CP016808.1\|WP_172455372.1\|644746_645439_-\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	4.63909e-32
NZ_CP016808.1\|WP_099516920.1\|645708_646626_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.86207e-53
NZ_CP016808.1\|WP_099521419.1\|647853_648423_+\|YdeI/OmpD-associated-family-protein	gnl\|CDD\|379149	pfam13376, OmdA, Bacteriocin-protection, YdeI or OmpD-Associated. This is a family of archaeal and bacterial proteins predicted to be periplasmic. YdeI is important for resistance to polymyxin B in broth and for bacterial survival in mice upon oral, but not intraperitoneal inoculation, suggesting a role for YdeI in the gastrointestinal tract of mice. Production of the ydeI gene is regulated by the Rcs (regulator of capsule synthesis) phospho-relay system pathway independently of RcsA, and additionally transcription of the protein is regulated by the stationary-phase sigma factor, RpoS (sigma-S). YdeI confers protection against cationic AMPs (Antimicrobial peptides) or bacteriocins in conjunction with the general porin Omp, thus justifying its name of OmdA, for OmpD-Associated protein.	3.23739e-09
NZ_CP016808.1\|WP_099516916.1\|637989_638880_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.72113e-85
NZ_CP016808.1\|WP_099516918.1\|643289_643931_-\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.14258e-49
NZ_CP016808.1\|WP_099516911.1\|632264_632972_+\|hypothetical-protein	gnl\|CDD\|131944	TIGR02898, Uncharacterized_lipoprotein_YlaJ, sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination].	1.29755e-06
NZ_CP016808.1\|WP_099521417.1\|639011_640337_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.01884e-86
NZ_CP016808.1\|WP_099516922.1\|647355_647772_+\|DUF1761-domain-containing-protein	gnl\|CDD\|369962	pfam08570, DUF1761, Protein of unknown function (DUF1761). Family of conserved fungal and bacterial membrane proteins with unknown function.	1.75377e-13
NZ_CP016808.1\|WP_099521418.1\|640647_641622_-\|family-43-glycosylhydrolase	gnl\|CDD\|226449	COG3940, COG3940, Predicted beta-xylosidase [General function prediction only].	0
NZ_CP016808.1\|WP_099516926.1\|652874_653828_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	3.00183e-57
NZ_CP016808.1\|WP_099516927.1\|653905_654802_+\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.60082e-89
NZ_CP016808.1\|WP_099516915.1\|637113_637956_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.75493e-75
NZ_CP016808.1\|WP_099521420.1\|652060_652810_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|224406	COG1489, SfsA, DNA-binding protein, stimulates sugar fermentation [General function prediction only].	9.40807e-35
NZ_CP016808.1\|WP_099516917.1\|641829_642762_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|226652	COG4189, COG4189, Predicted transcriptional regulator [Transcription].	1.73877e-134
NZ_CP016808.1\|WP_099516925.1\|651095_651869_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	6.06637e-30
NZ_CP016808.1\|WP_099516923.1\|648682_650170_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236407	PRK09198, PRK09198, putative nicotinate phosphoribosyltransferase; Provisional.	0

>NZ_CP016808.1|WP_099516918.1|643289_643931_-|nitroreductase-family-protein
MGELKTIIEKRRSAVNFVENVAISEDELQQLFSLNRFVPSAFNLQHSHYIVATSEESKEKIYEASKQYKVKNASAAIVVLGDTKAHLNVGELNAGMLALGMMSKLDYDQENENVIQFYESRGELFQRDDAIRNASLSAMQFMLIAKDMGWDTCPMIGFDADKIQQLFEIPDRYVPVMLITLGKSDPNKERPRGYRKPVNQYVNMNAFHSPDTH
>NZ_CP016808.1|WP_099516917.1|641829_642762_+|ArsR-family-transcriptional-regulator
MKIELSEQYLPVFEAISSNVRIQIIHLLSQKSMNIRELAEALGLSSAIMTMHVKKLEKANIIHSEMTPGKGGAAQKVCSLSIDNLEIMFPIKDVIPREVRRTDISIGHFTDLDISPTCGICTRDSIIGIFDDPRHFLDPERLNAKILWFGQGYIEYKMPNYMLGSENPEQLEISMEISSEAPFTNNNWPSDISFFFNGMKVGMWTSPGDFGGKGKLNPPWWFESVNQHGLLKHLIVKKEGTFMDGIKLSDVTIDDIDIRSNQWTFRIAVEENAEHIGGVTLFGSGFGNHNQDLVFRLYYTKQPQEKDIEA
>NZ_CP016808.1|WP_099521418.1|640647_641622_-|family-43-glycosylhydrolase
MEQQIQAEQSFVNPIIPQRADPWVYLHSDGYYYFTGSVPEYDRIELRRARTIQQLGEAEPVVAWRKYAEGPMSANIWAPELHVVQGKWYIYFAAARTTETVEGLFDHRMFVLENESANPLEGEWVEKGQLVANWESFALDATSFEHKGTQYLVWAQKDLAIAGNSNLYIAAMSNPWTMSGKQVMIAQPEYEWEKIGFCVNEGAAVLKRGGTIFISYSASATDHHYCMGLLSASEDSDLLDPASWSKAPEPVFATSEENGQYGPGHNSFTVSPDGKQDILIYHARNYKEITGDPLYDPNRHTRAQVFGWTADGKPSFGVPVRDGK
>NZ_CP016808.1|WP_099521417.1|639011_640337_-|sugar-ABC-transporter-substrate-binding-protein
MAATIVLGGVIAGCSSNSQTEGSTEAGQGGTKQLSFMFRGGPEEQKAYEATVKKFEADHPDVKVKIITTTGDQYATKLKAAITGKSVPDVFYFDPGDLRAYVNAGVLKDITEYVKDVDFDNIWKRGVDIYRYDGNNVGQGSIYGLPKDVGPFALGYNKDMFTAAGIPLPDKEKPYTWDEFIKVNQQLVKDTNGDGKIDQYGTGFNVNWALQAFVWSNGADWLDATNTKVTIDDPKFAEALQYFADMQNVHKITPSIEDAATLDTYQRWMKGELAFFPVGPWDLATYETLPFDYDLIPYPAGSTGKSATFLGSLGIGVSSGSKNPEEAAQLVTYLTASPEGMQQLVDAKVQIPNLIDMAEKWAADTTTKPANKAEFLRIVEDYGKPMPNTLTYNSEWYQLFFTDIQPVLDGKVTAADYVKAEQPKMQKLLDKAVEQEAKSKK
>NZ_CP016808.1|WP_099516916.1|637989_638880_-|sugar-ABC-transporter-permease
MKVRSNLYRKEGYYGYLFVLAPVVGYLLFTLYPLLYSLYGSFTDWDGLGQMTFIGLDNFKDILADELFYKASFNTIFMMIGIPIEITLALLLAMGLNRKMFGTTTFRVIYYVPVISSLAAVSILWQWAYNGDYGLVNQFLALFGFEGPNWLADKYTVKPALILMMIWKNIGYSMLLYLAALQSVPKDYYEAAQLDGANSWNIFWNITFPMVKPVTFFIVVTKIIGGAQIFTEVNIMTPTGGPEYSSATVVFYVWKKAFENLQMGYASGMAMLLGLFIFVITLVQFRMNERASKDME
>NZ_CP016808.1|WP_099516915.1|637113_637956_-|carbohydrate-ABC-transporter-permease
MLSLKRFNLTDVLAFIVISVGAVFMVAPLLWTLSTSFKSKAEVFALPPVWIPETFHFEKYIEIWEKGPLLSGIQNSLIITVCVTIIGTFTSSLAAFAFAKLRFPFKNMIFLLLLSALMIPYPAVMIPQFILFSEFGWVDTLKPLIVPGLFGNIMMIFFLRQYLTSVPGAIIEAAKIDGSSYFGIFSKIIFPLIRPAVAAQLILWFMAVWNDYLAPIIYLNSPEKQTLQLVIANFNATYAIQTDYALIMAASFIALLPMLIIFLVFQKQIIESVAISGVKG
>NZ_CP016808.1|WP_172455694.1|635704_637084_-|arabinan-endo-1,5-alpha-L-arabinosidase
MTAIATVWLTGCSGEELVYPQAPTSYPMYDTANIDNEQAWNMSNVHDPSIIKDGDTYYIFSTDVKVGGTAKPGLMVRKSKDLMNWEWAGYALDGVPAEAEAWTGATGMWAPEVAKLGDRFYLYYSASTFGSNRSFIGVATSDSLEGPWTDQGEVVKTGPGDEPNAIDPNIVKDAEGKPWFVYGSFFGGIYAAPLDPATGKLKEQGYGTKIAARAASESGAVEGPYMIYNAELKQYYLFVSYDSLSQDYNVRVGRSASITGPFLDSLGRDMLDTAYDPTFDVGNKIMGGYRFAEGEGWIAPGHNSILQDGDSDYIVHHARPEQDSNWMYLHVRKLLWNGDGWPVVSPERYAGEQVQTIPKSALAGTWERIVHEKYIDGPIDSEAIELRKDGKIGAEDSADYWEFDGEHTVRLYFQDDDQTKAGVETVLVLPAWDAERNKPSLVFTGMDDKGLAVWGKQIK
>NZ_CP016808.1|WP_099516913.1|634314_635160_-|DUF421-domain-containing-protein
MQDWLEITLRTLSSVVILFVMTKLLGKRQISQLSLFEYITGITMGNIASYISLDLDNEWYLGILALLVWVIVSVGFEFATMKSKTLRNFIDGQGTVLIRRGKLLRKNLQKERMTLDEFLEQLRKKDVYRMADVEFAIMEQSGEINVLLKKEQQPLTADIIGLQVEPEAEATTIIMDGKVLKETLRESGLDDNWLNKKLRDQRIEVKDIFLGQVDDQGELMIQTGTKSIEPAKPTNPKSQLLTIMKQFEVQLQLQEQLSLNEKDKSDYQSAVNKLQALIDKK
>NZ_CP016808.1|WP_099516912.1|633052_634201_-|MFS-transporter
MRQVLFLRAYNYFYFSLFALFLSFLPIYLAERDISATNIGLMLGLGSLIGVVSQPLWGMISDKYKVIKKVLLLLIAVSVVIGGLLYRSTELVPLFVGISLMYFFFMPTDPLVESFNYRVSLQYKVNFGSIRMFGSLGFAMASSIIGYAGKHYGIGSLAVLFLVYGVITLLLCSLLAEVPATAKPMALREIGLFFRSKQTLWFLGLVLFLAVPHRMNDNYIGLYIKSLGGDVQLVGQAWTVMTIIEVVFFAISHYFIKPGKELAVIAAAASCYALRFALSAVVTDPAALIWLQLLQGVSFVLFYAASIQYLYKLVPEEWKATGQTVLAVLLFGVSSIISATVGGWFIDQYGGTKLYSAMAVWSFAAMLLCLFIMLKQRKGDPA
>NZ_CP016808.1|WP_099516911.1|632264_632972_+|hypothetical-protein
MPKKRMFYALLCSALLVCSSTACNYEQRVQDSDYDYGSRQAGDPKMLGSKMYGTTTNNPHQHDNAFFEYSNTLSKKVTNLNGVAAANVMLTDKNAYVGIVLDWTAVGTRGAGGNREQLNGGKPEDAYNTSRVSPLEDNRLLVKPYQSYFSVNDHNELSPELKQTIATRIRELAPMVQEVHISANMDFVNKLNDYAVESWGGRSLTPHVDAFNTLVKYQFVGGQEMPKPITSKKTP
>NZ_CP016808.1|WP_172455372.1|644746_645439_-|DsbA-family-protein
MKKKNVKSRSLVWYTLVIVVVFIALFAINEISKSRTGIEQEAAEAPPISSQPTWGDKAAKVSIVEFGDYKCPSCKAWSSQIWPQLKKDYVDTKQVSFSYVNVLFHGAESALGALAGEAVLESNPDDFWHFHEALFAEQPDADHDGLWITVEKLMQVAEASVPDLDKDQFKALLSSEEIQARVDQDQQLVKDFNILQTPTIMINNKRIGNPFDYEAIQAVIEQELSEAATE
>NZ_CP016808.1|WP_099516920.1|645708_646626_+|YafY-family-transcriptional-regulator
MKLERLVSIIYKLLNNKVLSASMLAEEFQVSQRTIYRDIDVICAAGFPVVSYQGMHGGYGIMDGYKMDKSLLGSYDVDSLITVLSSLATVFDDERAQGTIERLQTIGPEHQSPSLSVNLETRRAEPDALRHLRTGITKRKIVRFDYINANNERTTRDMEPMWLHFKYSNWYVYGFCRARQDYREFRLSRMMNLFLTEDSFQPHQAAPKEAAISTTEWHDQLRNVVIRVGPEALAEAMDQFHQADKQFHADGSMTMQIPVYKPLEARWLWSILLGFGSGAEVLEPFALRGILKKQLQKTLQLYEEV
>NZ_CP016808.1|WP_099516922.1|647355_647772_+|DUF1761-domain-containing-protein
MFNVLLEINWIAVLLAVLATSILGGVWFTIFFGKAYAFALGKEGTPREKPAPLFIAGPFVCGLATTVTMAILIYAFDIESMVNALIFGGIVGVGLLASTTVNTAINPNMPRPLLYGLISGSYFLLTGLIISVIVVAMK
>NZ_CP016808.1|WP_099521419.1|647853_648423_+|YdeI/OmpD-associated-family-protein
MDIENLLALTSREALRIWLQENGQTEACCWVVVSMTPNPDTLLYLDAVEECLCFGWIDGVKKKFSASQLAQRLSPRSKKSSWTELNKERVRRLEKLGLMSDEGRKVLPDMEPHSFKIDRLIDQRLKEDPQGYENFCAFPALYQRVRIDTIQSYKNQPSLFESRLDKFIANTKENKMYGQWHDNGRLLNY
>NZ_CP016808.1|WP_099516923.1|648682_650170_-|nicotinate-phosphoribosyltransferase
MTTKTAYPATLLCDFYKISHKNQYPKGTELVYSTWTARTSRLEGVEEVVAFGFQAFIKEYLIDYFNEHFFARTKEEVVEEYRRVLKFALGDANPDASHIAALHELGYLPIRVKAIEEGLIVPVKVPMLTIENTHPDFFWVTNYLETLMSCQLWMPTTSATIAFEYRKILEQYALQTNGDTSGVPFQGHDFSMRGMSSLEAAKGSGAGHLLSFTGTDTVPAILYLEQFYGANMEKELVGTSIPATEHSVMCAHGTDEMASYRYLINEVYPNGFVSIVSDTWDLWSVLDVVVRGLKEDILARDGKVVIRPDSGDPVKIICGDPDSQHPFERKGVIEILWDIFGGTVTEKGFKQLDSHIGAIYGDAITISRCREICEKLAAKGFASTNMVFGIGSFTYQYNTRDTFGFALKSTFTIINGEERKIFKDPATDIGKVKKSQTGLVLVTEQDGVLTLTDDLSVQQYEARKHEDALKTIFENGKLVREQKLAEIRANLLGKL
>NZ_CP016808.1|WP_099516924.1|650171_650981_-|ribose-phosphate-pyrophosphokinase
MIKLNGVELVFKTFPNGETLVDGDAITALIAEQNTLAFKYDNDSDLIKLMFVKQYLDSRKAQASLTIAYMPYSRMDRIEGTSVFTLKYVSGLINSLAFEHVTVLEPHSDVTLALLNNCSARYPTIELLDLVVEATGFDRASDYLFFPDAGAQKRYSKVRGYNELVGFKARNFQTGEIERLDVVGEVASVGFKAIIVDDLCSYGGTFMRSAEKLKGLGAAEIYLLVGHCEPSIHKGKLLESPLVDKVFTTNTMLNEAGHEKIQLFEWGEV
>NZ_CP016808.1|WP_099516925.1|651095_651869_-|NUDIX-hydrolase
MKHLIENESNYSPDRYRTPDGAPTDIVIFTIVSTQRSKVKKALPHHELQVLLIKRNIWPFEGQWALPGGFTLETETVQECARRELLEETQVSEVHLEYFNVYSAPGRDPRGWMISHAFLALVGEQQLANRQAAVDASEVQLFSVEEALKLPLAFDHRILIQDARIQIQRKMLTTTIAKAFLPDEFTIAELYQVIQAVVPDFAEQNFIRKITSTQSRSGIIEKVVDAAGALKSSNQYSQRPAQLYRFTGLEPQLSIYG
>NZ_CP016808.1|WP_099521420.1|652060_652810_+|DNA/RNA-nuclease-SfsA
MNNDAFIFETPLIEGLILRRRNRFIMEVAIDGIIYDCHCPTTGRIGSIVFRDIPCLLSKSKDLTRKTLYTVEAISLDLLSEPNKSWIGINQNAANRYVEHFLKNGQLSAMVSSDSVKREQKLGNSKLDFLVGNTYIEVKTPLTTLQVEKKDHITTAKGSEFNSFERFLKHIGELEASLAENDRAILFICFIYDSPEFRGSKNGKYSSYIRESVESSIKRGVEIWQGNFKITPDEVKLIRYFETTTDMLN
>NZ_CP016808.1|WP_099516926.1|652874_653828_+|YafY-family-transcriptional-regulator
MNKTERLLSIVLELQRNKVLKAEELAEMLEVSSRTIYRDVQVLSESGVPIIGATGLGYSLMNGYFLPPVSFTVEEAAALLIGAEFVEQRFDPVYSRSARSSRGKIEAVLTEPIRDEADRIRDNILLLHKDYEPEIGHREKAYVAAIRTAMLEGNKIRFEYHKRAAQANDKHEMLRTVAPYGLVLDEQNGWLLVAHCDLRDDIRHFRVSRIKELAITNETFQLPSSFHLHGYQPKDDRDVKVQVLFNVSIAEKVKIANNYYMEDARLNADGYYVTFRVRRSEDLLSWLLGWGADAIIIEPEAFKLRIKKEIENMMKRY
>NZ_CP016808.1|WP_099516927.1|653905_654802_+|SDR-family-oxidoreductase
MNTTKETILVTGAGGNLGRLAVQWLLENYDGPIIAATRTPEKLSDLADRGVSVRHADFNQAETLTDAFAGVQRLLLVSTDALEVPGQRITQHSNAIQAAVNAGVKHIVYTSFFNPEPGTANLTAGDHYSTEEAIKNSGLSYTILRSNLYAENLLQSLTHTVATGQYAAAIGEGKIAYVTRKDCAHTAAAALASSNTDKHTRNVTGPEALSGYDIAQILSDTTKKNIIYIPLETSQLVGIYESFGVPNAVAHALASFDTASARGEYDQTSTTVQELTGQAPTSLKPFLDEYYWKTITIC

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Crispr_ID: NZ_CP016808_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_4

708129-708438

Unclear

Consensus_repeat	Method
AGTTTCAATCCACGCACTCCATACGGAGTGCGACA	CRISPRCasFinder
GTTTCAATCNACGCACTCCATACGGAGTGCGAC	CRT
AGGAGTTTCAATCCACGCACTCCATACGGAGTGCGACAT	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP016808_4

>merge|NZ_CP016808|4|708129-708438|CRISPRCasFinder,CRT,PILER-CR
GGTTTAAAATTGCGCACTCCGTACGAAGTGCGACTGAAGACGAACATGGCAATGAAAGTGAATGTTGATGGGTTTCAATCTACGCACTCTATACGGAGTGCGACGCTATGGACAGTGCAAAGCGTGCGTATCAGCAGGTGTTTCAATCCATGCACTCCATACGGAGTGCGACGTCAACCAGCAGCTAACCAGCAGCTAACCACGAAAGTTTCAATCCACGCACTCCATACGGAGTGCGACATACGGCTGGATGACAGCACAAGATTTTTAAAGGAGTTTCAATCCACGCACTCCATACGGAGTGCGACAG

>NZ_CP016808|4|4|708129-708437|CRISPRCasFinder
GGTTTAAAATTGCGCACTCCGTACGAAGTGCGACT	GAAGACGAACATGGCAATGAAAGTGAATGTTGATG
GGTTTCAATCTACGCACTCTATACGGAGTGCGACG	CTATGGACAGTGCAAAGCGTGCGTATCAGCAGG
TGTTTCAATCCATGCACTCCATACGGAGTGCGACG	TCAACCAGCAGCTAACCAGCAGCTAACCACGAA
AGTTTCAATCCACGCACTCCATACGGAGTGCGACA	TACGGCTGGATGACAGCACAAGATTTTTAAAGG
AGTTTCAATCCACGCACTCCATACGGAGTGCGACA

>NZ_CP016808|4|4|708130-708436|CRT
GTTTAAAATTGCGCACTCCGTACGAAGTGCGAC	TGAAGACGAACATGGCAATGAAAGTGAATGTTGATGG
GTTTCAATCTACGCACTCTATACGGAGTGCGAC	GCTATGGACAGTGCAAAGCGTGCGTATCAGCAGGT
GTTTCAATCCATGCACTCCATACGGAGTGCGAC	GTCAACCAGCAGCTAACCAGCAGCTAACCACGAAA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ATACGGCTGGATGACAGCACAAGATTTTTAAAGGA
GTTTCAATCCACGCACTCCATACGGAGTGCGAC

>NZ_CP016808|4|4|708264-708438|PILER-CR
AGGTGTTTCAATCCATGCACTCCATACGGAGTGCGACGT	CAACCAGCAGCTAACCAGCAGCTAACCAC
GAAAGTTTCAATCCACGCACTCCATACGGAGTGCGACAT	ACGGCTGGATGACAGCACAAGATTTTTAA
AGGAGTTTCAATCCACGCACTCCATACGGAGTGCGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099521426.1\|712707_714618_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP016808.1\|WP_099521427.1\|714667_715432_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP016808.1\|WP_099516957.1\|704408_704786_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP016808.1\|WP_150131502.1\|716528_716981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516964.1\|717056_718298_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP016808.1\|WP_099516952.1\|698813_699107_+\|aminoglycoside-6-adenylyltransferase	unknown	unknown	gnl\|CDD\|377357
NZ_CP016808.1\|WP_099521425.1\|711844_712675_+\|cell-division-protein-FtsQ	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516959.1\|707817_708096_-\|DUF4085-family-protein	unknown	unknown	gnl\|CDD\|372558
NZ_CP016808.1\|WP_099516961.1\|709468_710218_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP016808.1\|WP_099516954.1\|701169_701868_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP016808.1\|WP_099516960.1\|708638_709451_-\|AAC(3)-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|376807
NZ_CP016808.1\|WP_099516956.1\|702716_704297_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP016808.1\|WP_099516962.1\|710389_710659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516963.1\|710700_711546_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP016808.1\|WP_099516951.1\|697104_698403_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|181495
NZ_CP016808.1\|WP_099516955.1\|701851_702526_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516958.1\|705166_706780_-\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|198356
NZ_CP016808.1\|WP_099516953.1\|699158_701039_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP016808.1\|WP_099516950.1\|695976_696648_-\|thiaminase-II	unknown	unknown	gnl\|CDD\|381701
NZ_CP016808.1\|WP_099521428.1\|715470_716226_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|379093

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099521426.1\|712707_714618_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.84406e-78
NZ_CP016808.1\|WP_099521427.1\|714667_715432_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	8.57014e-11
NZ_CP016808.1\|WP_099516957.1\|704408_704786_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.21899e-12
NZ_CP016808.1\|WP_099516964.1\|717056_718298_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	3.74347e-08
NZ_CP016808.1\|WP_099516952.1\|698813_699107_+\|aminoglycoside-6-adenylyltransferase	gnl\|CDD\|377357	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics.	2.10959e-20
NZ_CP016808.1\|WP_099516959.1\|707817_708096_-\|DUF4085-family-protein	gnl\|CDD\|372558	pfam13315, DUF4085, Protein of unknown function (DUF4085). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 101 and 269 amino acids in length.	1.49348e-18
NZ_CP016808.1\|WP_099516958.1\|705166_706780_-\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|198356	cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of putative bacterial L-ribulokinases (RBK; EC 2.7.1.16) and similar proteins. L-RBK catalyzes the MgATP-dependent phosphorylation of a variety of sugar substrates. Members of this subfamily belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP016808.1\|WP_099516954.1\|701169_701868_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	1.34933e-37
NZ_CP016808.1\|WP_099516960.1\|708638_709451_-\|AAC(3)-family-N-acetyltransferase	gnl\|CDD\|376807	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase. This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.	3.25414e-107
NZ_CP016808.1\|WP_099516956.1\|702716_704297_+\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	1.13048e-08
NZ_CP016808.1\|WP_099516963.1\|710700_711546_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.61218e-43
NZ_CP016808.1\|WP_099516951.1\|697104_698403_-\|acetylornithine-deacetylase	gnl\|CDD\|181495	PRK08596, PRK08596, acetylornithine deacetylase; Validated.	0
NZ_CP016808.1\|WP_099516961.1\|709468_710218_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.99297e-13
NZ_CP016808.1\|WP_099516953.1\|699158_701039_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP016808.1\|WP_099516950.1\|695976_696648_-\|thiaminase-II	gnl\|CDD\|381701	cd19366, TenA_C_BhTenA-like, TenA_C proteins similar to Bacillus halodurans TenA. This family of TenA proteins belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. This family includes Bacillus halodurans TenA which participates in a salvage pathway where the thiamine degradation product 2-methyl-4-formylamino-5-aminomethylpyrimidine (formylamino-HMP) is hydrolyzed first to amino-HMP by the YlmB protein, and the amino-HMP is then hydrolyzed by TenA to produce HMP. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	3.01822e-126
NZ_CP016808.1\|WP_099521428.1\|715470_716226_+\|PHP-domain-containing-protein	gnl\|CDD\|379093	pfam13263, PHP_C, PHP-associated. This is a subunit, probably the alpha, of bacterial and eukaryotic DNA polymerase III, associated with the PHP domain, pfam02811.	6.58142e-11

>NZ_CP016808.1|WP_099516959.1|707817_708096_-|DUF4085-family-protein
MKFCTREWYELMQITSFLIYPETEEQWEEELAYYRSEGVDYLGMQRESLEEKKEHLLKYLPEPFHLYIHDGTFNTVYLPPELKEMAKEWKQD
>NZ_CP016808.1|WP_099516958.1|705166_706780_-|FGGY-family-carbohydrate-kinase
MDQNIKQAIVKGETSLGIECGSTRIKAVLVDYNFQTIGSSSYEWENQLIDGYWTYHLNEMINGLQETYRQLKQEIENNYGVTLQKIGSIGCSAMMQGYIALDQAGELLVPFRTWRNATTGTAAWELTEKFQFKIPERWSIAHLYQAILNDEEHVAHLDYMTTLSGYMHWLLTGSKALGIGDASGMFPIDESTQQYNEDMVKQFADLIADKDYPWKLKDILPKVYTAGEHAGYLSGAGAQLLDPSGSLQAGIPLCPPEGDAGTGMVATNSVKKRTGNISVGTSIFAMIVLEKDLSTVYPEIDIVTTPDGSPVGMVLANNCSSDINAWLGLFREFYEAMGQKPDMNQLFSVLLGKALEADADGGGLLSYGYYSGENITGLAKGRPLFVRSPESRFNLANFMRVHLFTAFAALRLGMDILTQKEQLTIDRILAHGGLFKTPLVGQKMCAAALNVPVSVMSTAGEGGAWGMAILASYMVNKEKHEGLADYLATKVFNDAEGQEVYPDSADVFGFALFMKRYTEGLAIEQAAVDHFLENWKK
>NZ_CP016808.1|WP_099516957.1|704408_704786_-|histidine-phosphatase-family-protein
MSPLADATGLPIKLDERLTERVLLGQNHPDWREMLRRTYGDMDLCYEGGESSRTATSRAVQVVTEVLNSGWKNAVIVSHGNLISLLLGHLDQAFGFEEWEALSNPDVYELSFTGPASSFKRIWMP
>NZ_CP016808.1|WP_099516956.1|702716_704297_+|hypothetical-protein
MKTVKQLVQMMSVATMLAAGTGAFAPAALAADAPAGDYVKLRQAIENMQGEVTWDATSRSAEITVSGLKASFPIGSSSATINGAATEIGTPSLLTKSTTYVSKKALDSLKAQLVQQQNKTGFELAASFQMPSERAEIAASTPDGKRLLVTEADNGSISVLDIADINKVSVLKTVSFHDLSADAEVTSVTVSKDGSYGLAVIRTGDDVNKANKGLLAVVDLATYKTVKTYELGIGPDSIALSPDGLNAVIAIEDEEIDKAADEIDFANAKRPGSIMIVSFAGGDPLKGEVVDIATPLDDVEGAIYPHDPQPEYVAISPDSATAAVTMQENNAIALVDLKTKKLIRIFSLGTTQHKADLEDDGNVRFTQNLTARYEPDGIAFSPDGKYVMTANEGDLGKNEFKDGVKAGGRNIAVWDLEGKRVYDSANLIDEATAKVGLYPDDRSPNKGSEVENLTVATVDGTALAAVASERADAILFFDIANAASPVYLGLIPTAGESPEGIHRVQGRSLFVSADESTGTVSFYAKK
>NZ_CP016808.1|WP_099516955.1|701851_702526_-|hypothetical-protein
MEKGLSNKHKIRGWKRRVRHIEKWKQRYMRLDVEYLAHHQRDYVKLWIDLFYRLVRRNPPVWFSRLLLSELMDIYEAWHQQLKQRNEAFYLKIWLFEPDFISSQVVAAVGEQLHTYDYTFERSTMIQASADERLAKLPLLHKIKGVEHFGWQLHIDAEFYYESELDDDLASGFRTEREVKRIKSRAYNVEKQQWGGQPDTLYKLQAGDVWVGERRAWTGDESEG
>NZ_CP016808.1|WP_099516954.1|701169_701868_-|HD-domain-containing-protein
MNPKDNQEKHKEDHQEQQANESILLAAEQFVRQALEREYTGHDWQHIRRVTQTAKAIAREEQANLFICELAALLHDIADAKLNASEAAGLQKVRSWLEHNNVHPQHAAHVMEIISTMSFKGGGGKPMSTLEGEIVQDADRLDAIGAIGIARTFAYAGAKGHLLHDPNVRPRTEMTEAEYRSGESTAVHHFYEKLLKLKDLMNTAYGKKLAETRHQFMLAYLEQFYAEWDSEC
>NZ_CP016808.1|WP_099516953.1|699158_701039_-|molecular-chaperone-HtpG
MAKKQFKAESKRLLEMMINSIYTQKEIFLRELISNASDAIDKIYYKALSDDQLVFNQADYYIKVTADQEARTLTIADTGIGMTKEDLENNLGIIAKSGSLAFKNENEAKDGHNIIGQFGVGFYAAFMVADVVTVTSRALGSDEAFKWKSEGADGYTIVPATKDTVGTEIVLKIKDNAEEVSYDEFLEQYRLRAIIKKYSDFIRYPIKMDVAGQRPKEDSEGEFEEYSEEQTINSMVPIWRKNKNELTQEDYDNFYMEKRYGFDKPLKHIHISADGAVVYNAILYIPEHTPFDYYTKEFEKGLELYSNGVLIMDKCSDLLPDYFGFVKGMVDSEDLSLNISRELLQHDRQLSLIAKNIKNKIKNQLISLLKDERDSYEKFYKAFGRQLKFGVYNDYGANKDTLQDLLLFSSSKEKTLVSLDEYVERMPEDQKYIYYASGASIDRIEKLPQTEMVLDKGYEILYFTDDIDEFAIKVILKYKDKEFKSVSSGDLGIEADPSEETTEAEATDNKDLFEKMQTILEGKVSGVRASKRLKSHPVCLTSEGEVSIEMEKILQAMPDSQNVKADKVLEINVNHEILQSLKTAFASDEEKLGLYTNLLYNQALLIEGLPIQDPVEFTNAMCKIMV
>NZ_CP016808.1|WP_099516952.1|698813_699107_+|aminoglycoside-6-adenylyltransferase
MRSEQEMMKMLIDFDVSYFVTDMELFPPELGNWFSDLIIFEDVVQNEVLPTDRQYWTKPPTAKEFDDCCNEFWMVSTYYDTAITTYTERIYKKEGLL
>NZ_CP016808.1|WP_099516951.1|697104_698403_-|acetylornithine-deacetylase
MTEAWIEALQQQVDERQDELFALLAELVAYPTVSPPARNTLEAQQFLEKQLQANGFATELWEVYPGDPNVTAVKRGTDSERYRSLLLNGHMDVAEVGDSGGWKRDPFKLVLEDGRAYGRGTADMKGGLAALLFASKLLTEAGVELKGDLLFQAVIGEEAGEAGTRACMERGCEADFAIVADTSGLAIQGQGGVITGWVTLQSPETFHDGMRSRMIHAGGGVQGASTIEKMAKLIAGLQDLERHWAVSKSYDGFPPGSNTINPAVIEGGRHAAFIADRCSLWITVHFYPNEDYETIASEIEEHLLGVAQGDPWMRHNPPTFRWGGRSMIEERGEIFPSQELNPQWSGLKALEQSHQQVLGVLPVVGMSPSVTDAGWIGREGIPTVIYGPGQLEHAHAVDESVDSNELIYYTKVILGFIADWCNRPKAEAESSV
>NZ_CP016808.1|WP_099516950.1|695976_696648_-|thiaminase-II
MSKFSDRLYQASREVWQKSHEHPFLVEMREGTLDPQRFIYYLKQDYVYLIDYAKLFAYGSIKAGDMATMVKFAGLYHSTLHVEMELHRQYADRFGVTREQLEGTQPAPSNIAYTKYMLDVAANGSLAEVVAALLPCMWSYREIGVTFAEYPGALEHPLYKEWILMYSSEEFGELTNWCIGLMDQLAAGLPERELAKLEEHFVTTSKMEYLFWDMAYRREEWPV
>NZ_CP016808.1|WP_099516960.1|708638_709451_-|AAC(3)-family-N-acetyltransferase
MREQQLINSQKRPITINNIVQDLRRLGVREGDSVLVHASLSRLGWVCGGPQAMVQALMQAVGDEGTLIMPAQSGDWSDPAEWGNPPVPEEWYETIYRELPAFDPALSPTRGMGRIAELFRTFPATVRSAHPQVSFCANGKYAELITSEHMLSPQFGMASPLGKLYGLGAKVLMLGTGYESCTSFHLAEAICERLPMKQLGTAIYEGDERVWKWFTDFAYDSADFAQIGQCYDYEGSVQKGAVGSAESRLFDLKEAVDFAKQWLMFHRAME
>NZ_CP016808.1|WP_099516961.1|709468_710218_-|class-I-SAM-dependent-methyltransferase
MNQIDYEAFYNEVGASNGWDFSRLKCISEEAKWDLYQEVVKLSRKTDLLLDIGTGGGEAILSIADCALLLVGIDLSTGMVNTAMKNITKAGRGNVRVLQMNADKLDFPDRFFQTVACRHSAFNAQEVARVLENGGTFLTQQVSEYDKLNLKQAFGRGQAYGEKPGSLKERYLLELTEAGFTKIEVMEWNVAEFYETAEDLIFLLKHTPIIPNFGRQPEDFGRLEAFIRDNKSEKGIKTNAERFMIKAQR
>NZ_CP016808.1|WP_099516962.1|710389_710659_+|hypothetical-protein
MRNEKLVLVLSLFLIFVGFTAILFGYWEALQPKTGPVGNGAALPTFLQILPSILAIVTGILNLAHIVYRRRKAYFNNKDNQENTDQNPS
>NZ_CP016808.1|WP_099516963.1|710700_711546_-|MurR/RpiR-family-transcriptional-regulator
MVPINIKMDLDKMSKSQQAIANYVAGALAQIPYCTEEDIAQAVGVSTATVSRFWSTIGFANLKAFKKHLLQNEHATPAHKMKQILNKVDSEAADVVGEILDIAANNVAVTKQRVERAAFHQTVEAVHAARKVYIFGSGAAFCLVALLQFRLNRIGVQVVAMEASGSELFETLTHAGEEDVVLMFGFVRRSPELTVILEQGRAAGYRTVLVTDLLVSDMLEQSDIVLQLDRGELEGFHSMTAPVALVDALTVAVTKRQGQQALNQLDRLHALRKRYAAQLPK
>NZ_CP016808.1|WP_099521425.1|711844_712675_+|cell-division-protein-FtsQ
MVFILAMSLYGISNMFSELIPELKLGPIEIKVEYFAFIPLTLCILFNPLYAALGASFGEIIFGELLLGQFGGLGELEKFIEFSLAMYVAGLLVSDPRNRKQLALASFVAVGIDQMLGTIVDVGKVWFGIEEFEAVPGLPESILLIEGLSFLNAMIITGIFFSLLPTLFLVPRLYGKIEPLLGMKPRDSRVPLSLGQLMTPRLLITGICFFFLAVVAEFLAESDINFAVWEPEFIEQYGSGYMWVSIGAAALVLLATVAFAMRSKAKTAQKPGDIKL
>NZ_CP016808.1|WP_099521426.1|712707_714618_+|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MTARAAAAATTAPIIEMNDVCFQYPGAEGMALHDIKLAIQPGEFIAIAGTNGSGKSTLCKCLNGLIPNYYVGDLSGSIRVAGMDAANETVSSLSRKVTYVFQDFENQLVRPTVYDEACFAPLNYGYADYRQRGERALAMLGLEPLRDQWIWQLSGGQKHMTALAGALALDPDVIIVDEPVAQLDPYHAKLIYDKLAMLNKQYGKTIIVIEHHTEFIADYCDKVVLMDSGTIRWIKPVQEALSRVDELAALNILPPQVTLAVRNWEARSGKAAATAADSLYPITLAEAAVYFQKDTEAVAGAKKANQLQAAFPSARQAGFIAKQESQALSHSANSSSVPAKAADAAAPQELIRFEHVSYGYKTITRALHPVIRDLNLSIYEGDRIALVGNNGAGKSTLLKLISGIRRPNKGELTVCGRLTKRHSPEQLSEFVSFIYQHPEEMFIEDSVRKDVEFFPKARNKAGFSAFTDEVLERLRLTELQDRDGRLLSGGQQRRATLAIGLAMRPTVMLLDEPTASLDASSRREMTAMLAELEDQVKATLIATHDMQLVAEWANRVIVMHNGQVLLDTDTRSLFRELHVLEQAGLIPPQIVLLSDRLGLEPPCLSVDELLCRLAGAASADAAEQLPREESITSGSH
>NZ_CP016808.1|WP_099521427.1|714667_715432_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MRTAFGRQSTFLSRFDPRILIIWYSFFAIAPWFIHNKFILLGLLVPIVALTLSSKVSPLVLIIMGIGLISEISYILLGSLLFGGSLASFWPLMTLTLKILLISLASIAVFSSMDPEKLSDALLSLGMPAQFSFGVSYGYRMLPILIEEYHNIIHSFRLRGRSPQRKGIFGWRSLVYLATISVRAFYPLILNTAKRTRTTVEALEVRGFTYSLVSPDAKKLKLAYLRIRPLDFVFLGCSLCYMIALAVAGQHFSL
>NZ_CP016808.1|WP_099521428.1|715470_716226_+|PHP-domain-containing-protein
MNLDLHTHGKLSKKTHFSLDYFAAMTAEAIDNGLNAIALTEHFNTLNYTDMLDQLDAAFAYQDDYYDVNGLKVFTGMEVDVAERGHILIIGNRLYLRDLRQQLEPYAEKGSFIPFSELMDRTEDAPVLRIGAHPMRESNPLTQYAAEQLRRLHALDINAKDLYQYGPAMADQVRQLAAEIGLPACAGSDSHQPLQFGSVWNVLERDCCTAAELREELQNGRYSVEISPCLSVKVKAAQMMKELLKKTMTVE
>NZ_CP016808.1|WP_150131502.1|716528_716981_+|hypothetical-protein
MPSILQYSTQDVQPGTGSLPLQLTQGVEIFLTSIWLTATNTTNQLTFWGNVGWSIQLLNQAVTPQLTIRIRQNGSSSTDPILFQTTDSELFPGNLGFITLTNFNTSFIHTRVPDPTKIGVAVPFYLTVSYIGLGNVAISGPVNLTGQVLG
>NZ_CP016808.1|WP_099516964.1|717056_718298_+|exo-alpha-sialidase
MTNIPVTMGTLSQQEPSITINSLNNLTVIVTSSSIATGTSRINVYVSQDGGFTYPSTLTLPLPSGFTTQGNAVGAYGYSNTFMISNTQLNINPVRDSSISVYTSTDNGVTFSGPVITCQGYDAQIYNDKPWIYIDNSNGSPYLGIAHIAFTRYYDNFAASGQFYQRSLDSGQTWSTPQLLSNQMTGSAGFGTNVAVGPTGQVYVAWAQYSPGNPQFLFRRSDDGGVTFNPIVSVSNISLVPSPLPVPGWGFRVLTSAFLAVDVSPNQGQGIVYAVWQDYRTGFSHIYLSRSTNAGNTWSTPIQVDDSPLGTQNFYPNISVSRVTGLIQIVYYTNRVNSSLLDVYGTTSGDAGATFAVNTRLSAASFDPNADPSYGEPCRSLGDYIDVAFSYPDRPTTVWTGMINNVQNIISNL

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Crispr_ID: NZ_CP016808_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_5

718522-719096

Unclear

Consensus_repeat	Method
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CRT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	PILER-CR

8 spacers

cas2,cas1,cas4,cas7,cas5,cas3

The CRISPR arrays of NZ_CP016808_5

>merge|NZ_CP016808|5|718522-719096|CRISPRCasFinder,CRT,PILER-CR
TTTCAACGCCGTGCACTTCATATGGAGTGCGACAGGGGCATACGAGCCAATCGATGTGTGATATACGGGTTTCAATCCATGCACTCTGTACGGAGTGCGACGAACGGATGGAAAGCACTCTGCAAAGAGCTAAAGCGTTTCAATCCACGCACTCCGTACGGAGTGCGACCAATAATACCCATGATAGTCAATAGTTATTTTGTGTTTCAATCCACGCACTCCATACGGAGTGCGACCCTACGAAATACCTTTTAGCCCTTTGTAATCGTGTTTCAATCCACGCACTCCATACGGAGTGCGACCTGGAGGCTGGTAGCACGCTGAAAATCTATGTTAGTGGTTTCAATCCACGCACTCCATACGGAGTGCGACACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAGGTTTCAATCCACGCACTCCATACGGAGTGCGACACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAGGTTTCAATCCACGCACTCCATACGGAGTGCGACCCGCCTGAACTGCGGGCACTGGTTGACCAGCACTACGTTTCAATCCACGCACTCCATACGGAGTGCGAC

>NZ_CP016808|5|5|718522-719096|CRISPRCasFinder
TTTCAACGCCGTGCACTTCATATGGAGTGCGAC	AGGGGCATACGAGCCAATCGATGTGTGATATACGG
GTTTCAATCCATGCACTCTGTACGGAGTGCGAC	GAACGGATGGAAAGCACTCTGCAAAGAGCTAAAGC
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	CAATAATACCCATGATAGTCAATAGTTATTTTGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CCTACGAAATACCTTTTAGCCCTTTGTAATCGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CTGGAGGCTGGTAGCACGCTGAAAATCTATGTTAGTG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CCGCCTGAACTGCGGGCACTGGTTGACCAGCACTAC
GTTTCAATCCACGCACTCCATACGGAGTGCGAC

>NZ_CP016808|5|5|718522-719096|CRT
TTTCAACGCCGTGCACTTCATATGGAGTGCGAC	AGGGGCATACGAGCCAATCGATGTGTGATATACGG
GTTTCAATCCATGCACTCTGTACGGAGTGCGAC	GAACGGATGGAAAGCACTCTGCAAAGAGCTAAAGC
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	CAATAATACCCATGATAGTCAATAGTTATTTTGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CCTACGAAATACCTTTTAGCCCTTTGTAATCGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CTGGAGGCTGGTAGCACGCTGAAAATCTATGTTAGTG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CCGCCTGAACTGCGGGCACTGGTTGACCAGCACTAC
GTTTCAATCCACGCACTCCATACGGAGTGCGAC

>NZ_CP016808|5|5|718658-719096|PILER-CR
GTTTCAATCCACGCACTCCGTACGGAGTGCGAC	CAATAATACCCATGATAGTCAATAGTTATTTTGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CCTACGAAATACCTTTTAGCCCTTTGTAATCGT
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CTGGAGGCTGGTAGCACGCTGAAAATCTATGTTAGTG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	ACTCTCCGCAAGTTCCGCATTGCTTTTCAATCAG
GTTTCAATCCACGCACTCCATACGGAGTGCGAC	CCGCCTGAACTGCGGGCACTGGTTGACCAGCACTAC
GTTTCAATCCACGCACTCCATACGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099521426.1\|712707_714618_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP016808.1\|WP_099521427.1\|714667_715432_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP016808.1\|WP_099516960.1\|708638_709451_-\|AAC(3)-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|376807
NZ_CP016808.1\|WP_150131502.1\|716528_716981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516964.1\|717056_718298_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP016808.1\|WP_099521429.1\|730582_732475_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238566
NZ_CP016808.1\|WP_099521425.1\|711844_712675_+\|cell-division-protein-FtsQ	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516965.1\|719301_719592_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP016808.1\|WP_099516971.1\|727796_728327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516968.1\|721274_722141_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP016808.1\|WP_099516962.1\|710389_710659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099516972.1\|728495_729497_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP016808.1\|WP_099516970.1\|724854_727326_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016808.1\|WP_099516966.1\|719600_720632_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP016808.1\|WP_099516961.1\|709468_710218_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP016808.1\|WP_099516967.1\|720628_721288_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP016808.1\|WP_099516969.1\|724114_724837_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP016808.1\|WP_099516963.1\|710700_711546_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP016808.1\|WP_099516973.1\|729489_730500_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP016808.1\|WP_099521428.1\|715470_716226_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|379093

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099521426.1\|712707_714618_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.84406e-78
NZ_CP016808.1\|WP_099521427.1\|714667_715432_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	8.57014e-11
NZ_CP016808.1\|WP_099521429.1\|730582_732475_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.83818e-87
NZ_CP016808.1\|WP_099516964.1\|717056_718298_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	3.74347e-08
NZ_CP016808.1\|WP_099516965.1\|719301_719592_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.91237e-33
NZ_CP016808.1\|WP_099516968.1\|721274_722141_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	7.62572e-126
NZ_CP016808.1\|WP_099516960.1\|708638_709451_-\|AAC(3)-family-N-acetyltransferase	gnl\|CDD\|376807	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase. This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.	3.25414e-107
NZ_CP016808.1\|WP_099516972.1\|728495_729497_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.0757e-81
NZ_CP016808.1\|WP_099516970.1\|724854_727326_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.68457e-63
NZ_CP016808.1\|WP_099516966.1\|719600_720632_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP016808.1\|WP_099516961.1\|709468_710218_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.99297e-13
NZ_CP016808.1\|WP_099516967.1\|720628_721288_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.87761e-27
NZ_CP016808.1\|WP_099516969.1\|724114_724837_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	2.39374e-90
NZ_CP016808.1\|WP_099516963.1\|710700_711546_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.61218e-43
NZ_CP016808.1\|WP_099516973.1\|729489_730500_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.21832e-84
NZ_CP016808.1\|WP_099521428.1\|715470_716226_+\|PHP-domain-containing-protein	gnl\|CDD\|379093	pfam13263, PHP_C, PHP-associated. This is a subunit, probably the alpha, of bacterial and eukaryotic DNA polymerase III, associated with the PHP domain, pfam02811.	6.58142e-11

>NZ_CP016808.1|WP_099516964.1|717056_718298_+|exo-alpha-sialidase
MTNIPVTMGTLSQQEPSITINSLNNLTVIVTSSSIATGTSRINVYVSQDGGFTYPSTLTLPLPSGFTTQGNAVGAYGYSNTFMISNTQLNINPVRDSSISVYTSTDNGVTFSGPVITCQGYDAQIYNDKPWIYIDNSNGSPYLGIAHIAFTRYYDNFAASGQFYQRSLDSGQTWSTPQLLSNQMTGSAGFGTNVAVGPTGQVYVAWAQYSPGNPQFLFRRSDDGGVTFNPIVSVSNISLVPSPLPVPGWGFRVLTSAFLAVDVSPNQGQGIVYAVWQDYRTGFSHIYLSRSTNAGNTWSTPIQVDDSPLGTQNFYPNISVSRVTGLIQIVYYTNRVNSSLLDVYGTTSGDAGATFAVNTRLSAASFDPNADPSYGEPCRSLGDYIDVAFSYPDRPTTVWTGMINNVQNIISNL
>NZ_CP016808.1|WP_150131502.1|716528_716981_+|hypothetical-protein
MPSILQYSTQDVQPGTGSLPLQLTQGVEIFLTSIWLTATNTTNQLTFWGNVGWSIQLLNQAVTPQLTIRIRQNGSSSTDPILFQTTDSELFPGNLGFITLTNFNTSFIHTRVPDPTKIGVAVPFYLTVSYIGLGNVAISGPVNLTGQVLG
>NZ_CP016808.1|WP_099521428.1|715470_716226_+|PHP-domain-containing-protein
MNLDLHTHGKLSKKTHFSLDYFAAMTAEAIDNGLNAIALTEHFNTLNYTDMLDQLDAAFAYQDDYYDVNGLKVFTGMEVDVAERGHILIIGNRLYLRDLRQQLEPYAEKGSFIPFSELMDRTEDAPVLRIGAHPMRESNPLTQYAAEQLRRLHALDINAKDLYQYGPAMADQVRQLAAEIGLPACAGSDSHQPLQFGSVWNVLERDCCTAAELREELQNGRYSVEISPCLSVKVKAAQMMKELLKKTMTVE
>NZ_CP016808.1|WP_099521427.1|714667_715432_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MRTAFGRQSTFLSRFDPRILIIWYSFFAIAPWFIHNKFILLGLLVPIVALTLSSKVSPLVLIIMGIGLISEISYILLGSLLFGGSLASFWPLMTLTLKILLISLASIAVFSSMDPEKLSDALLSLGMPAQFSFGVSYGYRMLPILIEEYHNIIHSFRLRGRSPQRKGIFGWRSLVYLATISVRAFYPLILNTAKRTRTTVEALEVRGFTYSLVSPDAKKLKLAYLRIRPLDFVFLGCSLCYMIALAVAGQHFSL
>NZ_CP016808.1|WP_099521426.1|712707_714618_+|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MTARAAAAATTAPIIEMNDVCFQYPGAEGMALHDIKLAIQPGEFIAIAGTNGSGKSTLCKCLNGLIPNYYVGDLSGSIRVAGMDAANETVSSLSRKVTYVFQDFENQLVRPTVYDEACFAPLNYGYADYRQRGERALAMLGLEPLRDQWIWQLSGGQKHMTALAGALALDPDVIIVDEPVAQLDPYHAKLIYDKLAMLNKQYGKTIIVIEHHTEFIADYCDKVVLMDSGTIRWIKPVQEALSRVDELAALNILPPQVTLAVRNWEARSGKAAATAADSLYPITLAEAAVYFQKDTEAVAGAKKANQLQAAFPSARQAGFIAKQESQALSHSANSSSVPAKAADAAAPQELIRFEHVSYGYKTITRALHPVIRDLNLSIYEGDRIALVGNNGAGKSTLLKLISGIRRPNKGELTVCGRLTKRHSPEQLSEFVSFIYQHPEEMFIEDSVRKDVEFFPKARNKAGFSAFTDEVLERLRLTELQDRDGRLLSGGQQRRATLAIGLAMRPTVMLLDEPTASLDASSRREMTAMLAELEDQVKATLIATHDMQLVAEWANRVIVMHNGQVLLDTDTRSLFRELHVLEQAGLIPPQIVLLSDRLGLEPPCLSVDELLCRLAGAASADAAEQLPREESITSGSH
>NZ_CP016808.1|WP_099521425.1|711844_712675_+|cell-division-protein-FtsQ
MVFILAMSLYGISNMFSELIPELKLGPIEIKVEYFAFIPLTLCILFNPLYAALGASFGEIIFGELLLGQFGGLGELEKFIEFSLAMYVAGLLVSDPRNRKQLALASFVAVGIDQMLGTIVDVGKVWFGIEEFEAVPGLPESILLIEGLSFLNAMIITGIFFSLLPTLFLVPRLYGKIEPLLGMKPRDSRVPLSLGQLMTPRLLITGICFFFLAVVAEFLAESDINFAVWEPEFIEQYGSGYMWVSIGAAALVLLATVAFAMRSKAKTAQKPGDIKL
>NZ_CP016808.1|WP_099516963.1|710700_711546_-|MurR/RpiR-family-transcriptional-regulator
MVPINIKMDLDKMSKSQQAIANYVAGALAQIPYCTEEDIAQAVGVSTATVSRFWSTIGFANLKAFKKHLLQNEHATPAHKMKQILNKVDSEAADVVGEILDIAANNVAVTKQRVERAAFHQTVEAVHAARKVYIFGSGAAFCLVALLQFRLNRIGVQVVAMEASGSELFETLTHAGEEDVVLMFGFVRRSPELTVILEQGRAAGYRTVLVTDLLVSDMLEQSDIVLQLDRGELEGFHSMTAPVALVDALTVAVTKRQGQQALNQLDRLHALRKRYAAQLPK
>NZ_CP016808.1|WP_099516962.1|710389_710659_+|hypothetical-protein
MRNEKLVLVLSLFLIFVGFTAILFGYWEALQPKTGPVGNGAALPTFLQILPSILAIVTGILNLAHIVYRRRKAYFNNKDNQENTDQNPS
>NZ_CP016808.1|WP_099516961.1|709468_710218_-|class-I-SAM-dependent-methyltransferase
MNQIDYEAFYNEVGASNGWDFSRLKCISEEAKWDLYQEVVKLSRKTDLLLDIGTGGGEAILSIADCALLLVGIDLSTGMVNTAMKNITKAGRGNVRVLQMNADKLDFPDRFFQTVACRHSAFNAQEVARVLENGGTFLTQQVSEYDKLNLKQAFGRGQAYGEKPGSLKERYLLELTEAGFTKIEVMEWNVAEFYETAEDLIFLLKHTPIIPNFGRQPEDFGRLEAFIRDNKSEKGIKTNAERFMIKAQR
>NZ_CP016808.1|WP_099516960.1|708638_709451_-|AAC(3)-family-N-acetyltransferase
MREQQLINSQKRPITINNIVQDLRRLGVREGDSVLVHASLSRLGWVCGGPQAMVQALMQAVGDEGTLIMPAQSGDWSDPAEWGNPPVPEEWYETIYRELPAFDPALSPTRGMGRIAELFRTFPATVRSAHPQVSFCANGKYAELITSEHMLSPQFGMASPLGKLYGLGAKVLMLGTGYESCTSFHLAEAICERLPMKQLGTAIYEGDERVWKWFTDFAYDSADFAQIGQCYDYEGSVQKGAVGSAESRLFDLKEAVDFAKQWLMFHRAME
>NZ_CP016808.1|WP_099516965.1|719301_719592_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVSTSSKEGRRRLSRVAKTCLNYGQRVQNSVFECIVDATKFRQLKYELEELIDKQTDSLRFYNLGDNHKSKVEHIGAKEAYDMEAALIL
>NZ_CP016808.1|WP_099516966.1|719600_720632_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLSLDGENIVIKRDDEIAGRYPLHNLEGVCTFGYAGVSPALMGKCAENNIELTFMTRNGRFLARVVGEDKGNVVLRKEQYRISDDERRSAFFARNMILGKVYNSKWVIERALRDHALRMDTERMKQVSASLSETMKLIRGVEQLDILRGLEGTATVQYNSVFDQLILQQKEQFFFHGRNKRPPLDNVNALLSFTYSLLAKDVTAALESVGLDAYVGFLHRDRPGRASLALDMMEELRSVYADRMVLYLINKKVVNDSGFVKKENGAVIMDDDTRKAVLKAWQERKQEKIMHPYLNEKIAWGLVPYAQALLLARHIRGDLDEYPPFFWK
>NZ_CP016808.1|WP_099516967.1|720628_721288_-|CRISPR-associated-protein-Cas4
MWDNNEEDFLMLSGIQHFNFCRRQWALIHIEQQWEENVRTVEGAHLHRKADQPMLREKRGDKLIVRALPVQSRRLGISGICDVVEFVRDSSGVPLAGEEGVYLPYPVEYKRGKPKRNDSDRSQLVAQLMCLEEMLMCELSLGYLYYDEIKHRVEVPVTEADKAKVKQSLEEMRHYYERNHTPRAKTGTHCQSCSLNVVCLPEMLERKPVSSFIESRLYE
>NZ_CP016808.1|WP_099516968.1|721274_722141_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVLDHKIDFAVILSVQNANPNGDPLNGNRPRQTYEGNGEISDVCLKRKIRNRLQDMGEAILVQSDERRDDGYRSIKERVDANADIQEYAKGKKQNNELYAQAACKAWIDVRSFGQVFAFSGTDVSVGIRGPVSIHTAFSVEPISISSMQITKSVNSVTGRDPNKKGSDTMGMKHRVDFGVYVIYGSINTQLAEKTGFTMDDTEKIRQALITLFENDTSSARPDGSMEVHQLYWWKHQSKLGQYSSAKVHRSLQIQLKEGVVEGKSIDDYTWTIQPLEGLEPQRYVGQ
>NZ_CP016808.1|WP_099516969.1|724114_724837_-|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVNGKYALFTDPLTKIGGEKFSYQVPTYQALKGIVESIYWKPTFIWYIDEVRIMNVIQTESKGIRPIEYNGGNMLAYYTYLKDVKYQVRAYFEFNPYREDLVYDRNEHKHHNIAKRSVQAGGRRDIFLGTRECQGYVEPCEFGIGEGSYDKVPEIDFGHMVHGISYPDETGSSERETRLWRARMEHGIIKFIRPEACLLTRKTGEGAAKAFGPENMEPVDQLHEQIFAEGENA
>NZ_CP016808.1|WP_099516970.1|724854_727326_-|CRISPR-associated-helicase/endonuclease-Cas3
MVYIAHIREKDGKIQTVKEHLIEVKEGCEQLGGKIGASHLAGLAGWLHDLGKNTTAFKNYIQLAVAAANDEAGGKAPKRGSVDHSTAGGRLIYHRYHKKSTKNTHKMAAEWIANCIISHHQGLRDFIDPGKTSPFLKRVEEKKEADIEQGYEQANAVFFEQHTEAELDAYFAKAAAELEQLVAVMQQYKLPRITCSLLIKYIFSCLIDADRTNSRQFEEEEAAEPAEDHGPFFKRSYEALMNKLDEMDEAEDADHPINRLRREMSLQCDAFALRPSGIYTLSIPTGGGKTLASLRYALKHAIETGKQRIIYIVPYTTIIEQNAQEIRDILQEQDMILEHHSNVIEEPDPPEKVEEADAYEVRRKKIKLARDTWDRPIIFTTMVQFLNTFYAKGTRNVRRLHQLSNAVIIFDEVQSVPIKCISLFNAALNFLHAFGRSSLLLCTATQPALEGVKHRLHLKEDAEIIGNLDEVGRSFKRVEVVDRTTPSGWKAEELADFVLSRMEEVDSTLVILNTKPAVRKLFAELEERQRPGDCDARLFHLSTNMCAAHRKDVLKELKEALASDGKERVICVSTQLIEAGVNISFECVVRSLAGLDSIAQAAGRCNRHGKDAIRSVYIIKSADEVLTHLKEISIGAEQAQRILNEMKEDPKLYGGDLLSKAAMQAYFSYYYGLIKDDMQYHVQKLDQNIFELLQQNKNYAAGYKGKHGKLPELVSFSALATAEQYFEVISNMARTVLVPYNEEARELILDLNGDLKGGELGILLRKLQPYVVNIYEHEFRKLDKNGNIQPLLHGEVLALSETAYSKRFGVETNGDGEFSSAII
>NZ_CP016808.1|WP_099516971.1|727796_728327_-|hypothetical-protein
MVLAVMSKQDFDTLNDERLGWACSKHILLEIRGKDRQAKTEAMAGLNESQRALCMFRVFYDHAKNSVSEYYGWVSQLLAEPGYWSGVISGLQFFGDSSMLRLLEETKEIFEERRVRLGLQWSDAVLKDLEQDHDLMAAASRLFSHLNEIAPQSLRLIRTYIRANPQQFVQWENSGL
>NZ_CP016808.1|WP_099516972.1|728495_729497_-|iron-ABC-transporter-permease
MPKQRTGKNISILLTLSIVLVGLSILCLAMGSVAIPVKEVLLSLLGRNTEDSDLIIMQFRLPRILAALLIGAALAVAGSLLQGVIRNSLASPDLLGVTGGASVAVVGFMTLFTGYSIHFVPVIAILGAFVAAALNYGLAWKKGVSTLRLVLIGIGISTAMSALTMFLLISGPAYLAAQVLNWMTGSIYGTNWSYIQALWPWVVVFIPLALLFAKELNVQSLGEDVARGLGSRLQLSRLLLLFFSVALAGAAVGIAGTISFIGLLAPHMARRVAGHSYAMIIPVSALLGAIVLLLADLAGRMLFMPLDIPAGVFTAGVGAPFFMYLLFKRKAGV
>NZ_CP016808.1|WP_099516973.1|729489_730500_-|iron-ABC-transporter-permease
MSKWMERPGSKLAVLAAGIVILLICMLASVLFGLQQFGLKDLWLAYSEFDGSNEHLILIHTRVPRALIAAAVGASLAVAGAIMQVLTRNPLASPSIFGINSGAVLFIVVGLALFGSSLTMSHMIGLAFIGAAVTAVFVYALGMQGRGGFEPIRLTLAGACVAAFSSSVTSGLILINKQSLESALFWMVGSVSGRELNHLVMVLPYIIAGLLLAFLLSGSLNVMALGDDNAKGLGQRLMLIRLLCTAAVVLLAGSAVSAAGPIAFIGLVIPHLCRALVGNDHRWLLPYVAVAGALLLVAADLLSRFVLLPKEVPVGVATALIGVPFLIHVARRKKYA
>NZ_CP016808.1|WP_099521429.1|730582_732475_-|AraC-family-transcriptional-regulator
MTRGEELRSYRLPASAFLYTTRGHAEVRLDGKTVLVERFHMLHGGKGMCLDIVPDDGLEYYLILYKAVLPLPSRQELVQLMEQHNPFQLQYSFVSRQPIALLDKIQRMEREWQHPNVLDQLYIKTMFYQFIHELFQQLSNQDIHVQKADYVSQAIRYMQEHYAKRIALDELAELLDCSVSYLSRKFKQAIGQSPIDYLIALRIGKAKELLLGTEATLQEIAESVGFPDDSYFNRLFKKHTGMSLGQYKAKVQNNPVPGSRYALVPRRLKRYSEYGYENHSHYKEEGPLFMYRESKISMMAAVLICFTLLLSACGAGTPSTNATTNTSSASPSSNAAAASPASTDTATADASRVIKHAMGEVTLTGTPERVVILTNEGTEALLAVGIKPVGAVQSWIGDPWYEHIKTEMADVTVVGDELQPNIELIASLKPDLIIGNKVRQEKIYEQLNQIAPTVFAEDLGGDWKINFKLYSQAVNKQDEGDKAMEEFDKRVAEVKAKIGDKAATKVSVARFSASQVRIYQKQTFSGVLLEQLGFARPESQDVDSFIEVMTKESIPKMDGDVLFYFVTEAAGKTDAAKVVEEWMNDPLFKNLEVVKNNKVVQVDEAIWNTAGGYKAANLLLDEIVKYFDIQ

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Crispr_ID: NZ_CP016808_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_6

1512299-1512438

Orphan

Consensus_repeat	Method
TTTCAAGGTGAAACGGCTGTCGCCGTTCTCTGGCGGCGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016808_6

>merge|NZ_CP016808|6|1512299-1512438|CRISPRCasFinder
TTTCAAGGTGAAACGGCTGTCGCCGTTCTCTGGCGGCGCAGCACGTCTCAGTCCGAGAAATATAGTGAAAGGATGGCGAAATCATGTCCTTTCCTATATTTCAAGGTGAAACGGCTGTCGCCGTCCTCTGGCGGCGCAGC

>NZ_CP016808|6|6|1512299-1512438|CRISPRCasFinder
TTTCAAGGTGAAACGGCTGTCGCCGTTCTCTGGCGGCGCAGC	ACGTCTCAGTCCGAGAAATATAGTGAAAGGATGGCGAAATCATGTCCTTTCCTATA
TTTCAAGGTGAAACGGCTGTCGCCGTCCTCTGGCGGCGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099517484.1\|1514707_1515538_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP016808.1\|WP_099517475.1\|1503842_1505051_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP016808.1\|WP_099521494.1\|1505290_1506811_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP016808.1\|WP_099517478.1\|1508462_1509701_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP016808.1\|WP_099517487.1\|1518975_1519848_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016808.1\|WP_099517491.1\|1524128_1525139_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176227
NZ_CP016808.1\|WP_099517490.1\|1523134_1523995_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NZ_CP016808.1\|WP_099517479.1\|1509822_1510125_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_056031871.1\|1507968_1508460_+\|cation:proton-antiporter-regulatory-subunit	unknown	unknown	gnl\|CDD\|223564
NZ_CP016808.1\|WP_099517486.1\|1517610_1518954_-\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|377757
NZ_CP016808.1\|WP_172455698.1\|1506913_1507375_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377622
NZ_CP016808.1\|WP_099517488.1\|1519859_1520807_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP016808.1\|WP_099517480.1\|1510228_1510717_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP016808.1\|WP_172455417.1\|1515774_1517571_-\|PrpR-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377668
NZ_CP016808.1\|WP_099521493.1\|1501965_1503771_+\|5'-nucleotidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236505
NZ_CP016808.1\|WP_099517481.1\|1510775_1512218_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP016808.1\|WP_099517489.1\|1520885_1522466_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270299
NZ_CP016808.1\|WP_099517477.1\|1507529_1507895_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099517483.1\|1513253_1514300_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP016808.1\|WP_172455416.1\|1512500_1513025_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099517484.1\|1514707_1515538_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	4.1954e-12
NZ_CP016808.1\|WP_099517475.1\|1503842_1505051_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.138e-87
NZ_CP016808.1\|WP_099521494.1\|1505290_1506811_+\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.49746e-62
NZ_CP016808.1\|WP_099517478.1\|1508462_1509701_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.19651e-52
NZ_CP016808.1\|WP_099517487.1\|1518975_1519848_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.74318e-63
NZ_CP016808.1\|WP_099517491.1\|1524128_1525139_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	9.68473e-97
NZ_CP016808.1\|WP_099517490.1\|1523134_1523995_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.38096e-61
NZ_CP016808.1\|WP_056031871.1\|1507968_1508460_+\|cation:proton-antiporter-regulatory-subunit	gnl\|CDD\|223564	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism].	7.47961e-57
NZ_CP016808.1\|WP_099517486.1\|1517610_1518954_-\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|377757	pfam07005, DUF1537, Putative sugar-binding N-terminal domain. This conserved region is found in proteins of unknown function in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini interacting to produce an interacting surface into which a threonate-ADPcomplex is bound, suggesting that a sugar binding site is on the N-terminal domain here, and a nucleotide binding site is in the C-terminal domain (manuscript in preparation). There is a critical motif, DDXTG, at approximately residues 22-25.	2.15418e-75
NZ_CP016808.1\|WP_172455698.1\|1506913_1507375_-\|cupin-domain-containing-protein	gnl\|CDD\|377622	pfam06172, Cupin_5, Cupin superfamily (DUF985). Family of uncharacterized proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.	1.69025e-60
NZ_CP016808.1\|WP_099517488.1\|1519859_1520807_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	2.98946e-111
NZ_CP016808.1\|WP_099517480.1\|1510228_1510717_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	5.61484e-33
NZ_CP016808.1\|WP_172455417.1\|1515774_1517571_-\|PrpR-N-terminal-domain-containing-protein	gnl\|CDD\|377668	pfam06506, PrpR_N, Propionate catabolism activator. This domain is found at the N-terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.	6.37842e-52
NZ_CP016808.1\|WP_099521493.1\|1501965_1503771_+\|5'-nucleotidase-C-terminal-domain-containing-protein	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	2.93828e-132
NZ_CP016808.1\|WP_099517481.1\|1510775_1512218_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP016808.1\|WP_099517489.1\|1520885_1522466_-\|extracellular-solute-binding-protein	gnl\|CDD\|270299	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	4.89265e-54
NZ_CP016808.1\|WP_099517483.1\|1513253_1514300_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.53831e-14
NZ_CP016808.1\|WP_172455416.1\|1512500_1513025_-\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	2.66265e-05

>NZ_CP016808.1|WP_099517481.1|1510775_1512218_-|nicotinate-phosphoribosyltransferase
MNSANLTLHTDKYQINMMYAHWKNGTADTPAVFEAYFRKLPFGNGYAVFAGLERIVKYIEELCFGEEELAYLAEQEEQYEPAFLERLRAFRFKGSMYAMEEGTVVFAGVPLIRVEGTIFESQLIETALLNFMNYQTLIATKASRIVQVADGDTLLEFGTRRAQEADAAVWGARAAYIAGFHASSNMRAGMLFGIPAKGTHAHSWVQGHDTEEEAFMKYAEALPDQVTLLVDTYDTLESGVPNAIKTARWLESQGKQLSAIRLDSGDLALLSKEARKQLDAAGLPHVKIVASNDLDETLIFNLKAQGARIDIWGVGTQLITAADQPSLGGVYKLTARWKDGHYVPVIKLSANPEKVTTPGRKDVFRIRNLNTGLARADYIALCGEEEKPDGSRLKLFDPLHPYIYKYVNNYEAVPLLKCIFDKGSLVYELPSLSQVRQFHQEQLSSFLPEVKRKLNPEFYPIHLSEKTWQMKMDLIQQHQE
>NZ_CP016808.1|WP_099517480.1|1510228_1510717_-|translation-initiation-factor-IF-3
MLMNEKIKASEVELTGLNGEPLGVVSRAEALALAKQHKADLVCLSIMSSPPPCKLMGRGTAKQEASQAKRQEKAQGQPAKVKELRLGIDIEQHDYDTKQRQAAKLLESGHAVQLVVRVQGGKQGAAGKTLLERLLADLAEQGKPQTGIQVSGKQVMVQVNPS
>NZ_CP016808.1|WP_099517479.1|1509822_1510125_-|hypothetical-protein
MPLKTRIQELKAQLPKEHQELSHYVEHALQALENFESEHRRFAATQAVAGVRISGAEEIVFYDTIAKIKEELVNTLHKTVEDYVHKGDKNWNKNFKDGID
>NZ_CP016808.1|WP_099517478.1|1508462_1509701_+|cation:proton-antiporter
MDHLVLEIGLAVTLIALVGLIANKVKFSVIPFYILIGMAVGPHAPKFGVFDFRFIESAPFIEFLGRLGVLFLLFYLGLEFSVGRLMKSGKNIAVGGTIYIIINFTLGLVYGFSLGFPLEETLIMAGITTISSSAIVAKVLVDLKRTANRETEMILGIIMFEDVFLAVYISILSGLVLSGSSSLGGVLLSAAYALGFMLLVLVVGRKAVPLLNKILNIRSNELFLLLIFGALFLVAGFSETIHVAEAIGALLVGLVLAETAHMKRIEHLILPFRDFFGAIFFFSFGLTIDPTALGGAVWLSLGAVAITLFGNVLAGMLAGKSAGLSPKASANIGLTIVSRGEFSIIMANLGKAGGLMELLQPFAALYVLLLAILGPLLTKESKLIYNGMNKVFRFDRKKAKDKEPIKEPDVSN
>NZ_CP016808.1|WP_056031871.1|1507968_1508460_+|cation:proton-antiporter-regulatory-subunit
MNIRESDLPGIGRKYQMETRGGDKLVVVIHDDGRREMYHFEYDDPDDSISMVSMDDEEARQVAAIIGGMTYTPKALETIEVALDDLTIEWYKVEAGASCVGKTIGDSDIRKRTGTTIIAAIDKDGKHINPGPDYIFKADSTLIVAGERPHLKTLKQLLVNGSR
>NZ_CP016808.1|WP_099517477.1|1507529_1507895_+|hypothetical-protein
MNNNVLQQQARQSRLVKGLIILALLCTAILFAYQAEDLPELKSPSDQLTIAAGDHHGVAIRYQSGILKQLFQMTLIGVTIILGILACRKQRLIPLSIRRAFIPQQIKDLFLMPVKFTGSFI
>NZ_CP016808.1|WP_172455698.1|1506913_1507375_-|cupin-domain-containing-protein
MSEANKAISPLVEALGLQPHVEGGWYKELWKASFQIPQELLGEAYSGPRAAASSIYFLLHPHEMSDWHKVLSDELWIWHSGGPITLSLGGTADDPTLRKEIIVGGDVLNGQQPQAVVPAGEWQMSQPLGDEPSLFSCIVSPGFHYDDFQLIKR
>NZ_CP016808.1|WP_099521494.1|1505290_1506811_+|HD-domain-containing-protein
MIIFKKFIVQLIRNYLFGGAVAVLGVGSILIFSTLQLSSIEIIRLALLLVVSLIIMFSCEWLAFKRHIRPIRNIFYIEATSAQLREAYLQVHNFPLLSVKRIAGPHFLGLAIPVGSLTYISIKLQWIVFPYYYIAIGAACAVLIAAMHAMLEFFLTTRAIPPLITHIRAMHIKRFNADLTLEGQVLVTIRRKFLLSAFIIGTLPMLMFSLATQIRIEGYASTSSASAAYWQWAVLILIIGILFSWLSASLLSKDIQSPIETLQQALVSVQEGKLDHKAEDIYSDEFSKLVAGFNHMVDGLKEREKRNAQLLQSYFITLAAALEARDLYTAGHSERVAEYAVLIGQLAGWDDSVLDTIRKSALLHDIGKIGVRDAVLLKDGKLTDEEFDQIKQHPILGENILRRIEPADAMEHLLPGVRSHHERFDGKGYPDGLAGENIPLLGKVIAIADAFDAMTSDRPYRKGMTVCKALTILEEGKGTQWDPGLAELFIRWHREQQASEDTRAEA
>NZ_CP016808.1|WP_099517475.1|1503842_1505051_-|MFS-transporter
MREALWSKNFILLMGSNLLLFMALEMLLPTLPVFAAEQGGSQTQIGLIMGLFTFTAVISRLGTGYGIKRLGQKKLLLLGVAISLIALTGYYLAATLAVLLVLRVVHGVGFGIATTLFGTAASDLVPASRRGEGMGFFATGNSISFALGPFFGIWIMTEYGFKALFLIGAVVMLLSLISTCFVRFPRVEKKAPAAAAPVAETGSWMDSVVERKAFMPSLLGLLIGIPFGTVLSFIALFGKEQGLGSVGIFFLVVAISEFLIRFISGPLFDRKGRMWVLLPAAILCIIASVMLYFTHSTAMLLLSGLFYGFGFGALFPALQAWVIDLVEPERRGVATATYYNAFDIGIGSGSILLGAVAAVTNYSTMYLLSGGFFVLYIVLYVGFERRLRSKASSKSSSKSIQA
>NZ_CP016808.1|WP_099521493.1|1501965_1503771_+|5'-nucleotidase-C-terminal-domain-containing-protein
MNKFKWFTSILLAAALLLGAASVSAAASTPEKAGKHITLLHTNDMHARAVEAESNGELGFARLAGIIDSYRASNPNTLLLDGGDAIHGTTFATLVEGESVVRVMNAMGYDAAVPGNHEFNYGYNRLVELEPQMEYPLLSANIRVKKDDSPLFHPYVIKEVDGVKIGIFGLTTPETAYKTHPKNVDGLVFTDPAEEAKAIVAELKDQVDVIVALGHIGQDESSADTSIGIAKEVSGIDVFIDGHSHTVLKKGLEAGHGTLIASAGEYTKYIGVVDLWIDQGKVVSKEAKLIDYKAAAAIAPDQKIAELVDSIVAEQQEILSTEVGETAVRLDGEREQVRAGETNLGNLIADSLRSITKADIALTNGGGIRASIDEGIITLGEIITVLPFGNQIVTLNVTGADIKAALENGVSDYPNPKGAFPQVSGIAFKIDTAKAKGSRVHSVTVGGAPLDAKKLYSLATNDFIAAGGDEYTMFASYPQAGMFGALDEALTSYLRELGTAAKPAVEGRITEGATPSSASPSPSSSTKPKPEVIQPGPSSPAGTNQAEPAKAADYANYTVKKGDTLWSIAKRYNTTWQAIRDVNQIKNPDRIYIGQQLKIPA
>NZ_CP016808.1|WP_172455416.1|1512500_1513025_-|VanZ-family-protein
METRSNRYIIGIWLVILAAWILFVFHLSSQSFDQQTIRPKLQAWIGKEQLIRLLPDLSITYLGKTIEAKTNPYHFVEFIFRKSAHLFVYAMLGAIWFMLLRVVMKGRLLAPAMLSLLAAVTLAALDERNQLTSLNRTGNRMDVVVDFTGACIGIAVCLLLLAMVKLLYRKGRSR
>NZ_CP016808.1|WP_099517483.1|1513253_1514300_-|copper-amine-oxidase-N-terminal-domain-containing-protein
MKTFKIKSVMLLGLMLCMLLPHAASAQGDSSSNKAIVAKPLPVSLAFDGQKLELPNGQYVFEYQSRTYVPVRFVSYALQKTVKWNSETATVTVAEPTAEEAAALKKQLAGAIADDAAAAAAAAAATASPVSIRLTEVQASFVFEGKEQALPANQSAFYSKGSIYVPIRFMAEASGAAIKWDSKTGAVTGETAAYQQEQAEAGGSGSGGGSAGSGGTQPGTGEGSQPGTGGSSQPGTGGGAVDNTPKVAYEVITSEAEGKLDTLKTEATSTLTNLYMSFVAARDEATKEQLKLQAQTEVARIKSDFEAILADTAAKLTANGHSTAVIAEYRTAFEKDLATVLSYAESLA
>NZ_CP016808.1|WP_099517484.1|1514707_1515538_+|sugar-phosphate-isomerase/epimerase
MSYLSLNSWSLHRLLGPLHWTSWDAETQTHQTTDHEQPLELTLLELPAVAAAKGYKAIEVCHFHFPSTEAAYLQQLRDSFSAACLSFDTLLVDYGDLTSPEAARREADYQLMQQWIEVAAACGAKQVRIIAGEAEPTDHAAIRQSAEALIKLVDYGAARGVKIVTENFKLLTSVGDSCMELLEQAGDSLDLITDFGNFSGPAKYEDIGRTAVRSVSIHVKAINNEHGYPDQDELRRCLDQVQASGFDGAYVLVYDGPGDMWEGLERVKAVVQPYIA
>NZ_CP016808.1|WP_172455417.1|1515774_1517571_-|PrpR-N-terminal-domain-containing-protein
MKIKIVVVAPYPGLVELTTSLREELKEFEIKVLQGDLSEVLPLMNRIHLDGYDIIISRGGTARLLRKHSYLPVIDIQVSGFDIMRILMVVKGYQAKIKMIGFPNIIEGFISVSGLMEVDIPYASVQQESEVDEALQLAKAEGVKVIVGDNITVRKANEHGMQGVLITSGRESVLEAFAQAKQIYKVSESYKQKKLAFERLLDTMDTGYAIVNGKGIIQFSNEAFNAWFHLPENQTGLYADYPVFSRYMADLDKGVALEVLVQLDGQRQVAVSGGKMNDAAGDGMFYLKVRPVDQPGSGITMMYTSKQDDSFPPLVMTDHEFAGQSPSERAYPLAVFGETGAGKRLFAIKRWSSMPQSGSEMIELSITKRYDAAALAALTKLLSTDNEELIIYIRGVDQLSLADQRELAPVLAAAPGKIILSFDRSPLELKSSNALDGKLCDTFAGRIVSMPPLRERLDDLDEYIRTFLIMYNERYGKQIVGLRPEVMEALRTHEWRGNLFELRNVIDQFVRSSDGEYVEAERVELLKQAGSGLGAGGHEGSEHSSDAGGLDLSKTLDEIEYDIIRTVLEQEDMNQSAAAKRLGINRSTLWRKMKPSGS
>NZ_CP016808.1|WP_099517486.1|1517610_1518954_-|four-carbon-acid-sugar-kinase-family-protein
MKIAIIADDFTGANDSGVQFARSGLKASVLLNFDENTAAAFDDDVVIIDTDSRSLAAQEAYDRVRTAAEYVKSKPFDVIFKKVDSTLRGNFGAEFDALQDVLQPDFIVCTPAYPEYNRTVRDGSLYLNGQLLHETEFALDPKTPITISGIPELIRRQSGRRVALIKSADMALGQAHLKQRLAELAADGCHYLVFDAQSEQELRGIVSLFEKLEYCIIWAGSAGLAGCLTAAGGAVRENVLKLATSAVPVLAVIGSVNFKTRQQLALLLAEPQVAGIRLEAHVMVAPDAACNAELKRVYAAAALALEQGRPVVLYSSGEPDEIRLAMEAGSKLGMGQTEVSDRIAEALGRTAATLMEAYGLNRLILTGGDTAKQFCRFAGMEKFRLQGEVETGVPIGLFSGAKEVYGVTKAGGFGSGDVFVRTLHLLQGAGGSKPHPAGHNTVHSDRV
>NZ_CP016808.1|WP_099517487.1|1518975_1519848_-|carbohydrate-ABC-transporter-permease
MKKFSWFDLINNTLLVLVALLCVYPFVLIMATSLSDGKAVVAGSVYLLPKGINLEAYKYILGNERLGVTAGLLNSFFYTVVGGFVAVLVTFMTAYPLSRKRLVGRYTIMLLFLFTWVFEAGIIPNYIVYNGLGLVNSWLVMILPMAVNTFLLIITKSFLDELPYELEEAAVIDGANDWQIMWRVFFPLSKPIIATISVFNAVYIWNQFLIPMIYLQDRSMQPITVILYNMIINSSKGGTSLENITVNGVQLLPQNLQAASIFLAVVPILLIYPFTQRFFTKGMLLGSVKG
>NZ_CP016808.1|WP_099517488.1|1519859_1520807_-|sugar-ABC-transporter-permease
MSSIAKRATSKNSGLLKRMWDAKILYLILLPGLIHLILFKLLPLFGLVIAFQDYSIFKGIMGSKWIGLEHFSKFMSDPYFWKLVRNTLLLAFFNLLFVFPIPIIFALFVNEVRLSAVKRFVQTLSFFPYFISSAVIVSILYKVLSPQGGLVNQMLNFAGFESVFFMADPGWFRPLYVMLNVWQLFGYSAIIYMAAMTSIDPHLYEAADIDGANRFKKIIHVTLPSISSTIVVMFILAIGQILTVDLDKILLMYNPSIYDTADVIQSYVYRQAFASDGFPNYSFGAAVGLMQSVIAFVLVMMANKVSKKYSESRLF
>NZ_CP016808.1|WP_099517489.1|1520885_1522466_-|extracellular-solute-binding-protein
MNNKWNWKSVTTMSMVLLLAMTACSNGGNKAAPSASTGTDEGSAGGTTTFSYMMAGKYTNWLQDLNWYPVLEEKTNTKVELVNGGEDDDAYKKNLELKIGSGQFPDSGIVSLAQSEVYGGQGLFIDLKPYIDKFAPNIKAYLDANPDYAKLMTTKDGEIFGLAQEYPTISNVTFYRADMFEKAGITANPTTVQEFTDVLKKLKETYKDTANFYPFTGRDGYLKFQEAFAANDKIVDGKVHGIYENGKGSDIYSPGFKSLIEWYAQLYQDKLIDPEWVAGTATEESWQTKMLTGQGAISSDFFTRPSWFMNNGGPENDPKYSIKVMEPFKDASGNQTMLPPTEEKYRMDRVFVINEKAEDKAEGIIKFMDYMFSDEGRTLMDYGVEGKSYKEEGGKKAFTVKFEEQGNKPIGTPVWNFLQDRLTFPVPVNNEAYYQWMDDLTKSFATTFFDKYTSKEFSSLKYSTDQLKERTTLLANVKQALNAALVKFISGQRSLTEWDAFLGEMEQAGYNKLTDIDQAAYDAMSK
>NZ_CP016808.1|WP_099517490.1|1523134_1523995_-|LysR-family-transcriptional-regulator
MESGDLRIFRAVAREGSATKAAEALNYVQSNVTTRIQYLESELGLPLFVRSNRGMALTEAGENLLQYADRILALLDEAARTTKYSEQPVGPLRIGSIETAALTHLLPLFSRYQSEFPAVQLSLSTGGTHSLVQKVVRGELDGAFVYGPIEERNIGCVQAFSEELVLVSEAGKDNRAELLAKPMLFFDVGCTHRTRAEHFLHESGRTSYEIREFGTLDLIVKGVSAGFGVSLLPKSAIAKAAKEGLVSFHQLPEAYRDLPVEFIFRSDMKGSSALLSLLTMIGERGI
>NZ_CP016808.1|WP_099517491.1|1524128_1525139_+|zinc-binding-dehydrogenase
MKAISHRGASGIEGLKYEESADLKPGTGEVKIRLMAAGINHRDLFLMAGRTASDDPFILGSDGTGIVEAVGSLVSSATIGDEVIIHPCIGWEKTDEVPPVPAILGCPSNGTLAQYVIVPAANVFSKPAYLSWEEAGVLPLSALTAYRALFTKGQLRRGEHVLIPGIGGGVATFAMLMALAAGATVSVTSRSKAKQQAAVEQGASFALDSHSDWSSGLGRQAVDLILDSIGPATFGQYFEVIKPNGRIVTFGASSGDEITIPIRALFFPQVSIIGTSMGSREEFASMLAFVEQHQLHPVIDRVYPLAQAKEAFESMERGEQYGNIGISMSECPFDPA

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Crispr_ID: NZ_CP016808_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_7

2240787-2240922

Orphan

Consensus_repeat	Method
CTTTGCCGCCAGAGGCTGGCTTCAGCCGTTTACGCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016808_7

>merge|NZ_CP016808|7|2240787-2240922|CRISPRCasFinder
CTTTGCCGCCAGAGGCTGGCTTCAGCCGTTTACGCTTGAAATATAGGAAAGCATATGATTTATCCATCCTTTCTCTATATTTCTCCGCGAAACGGTAACTTTGCCGCCAGAGGCTGGCTTCAGCCGTTTACGCTTG

>NZ_CP016808|7|7|2240787-2240922|CRISPRCasFinder
CTTTGCCGCCAGAGGCTGGCTTCAGCCGTTTACGCTTG	AAATATAGGAAAGCATATGATTTATCCATCCTTTCTCTATATTTCTCCGCGAAACGGTAA
CTTTGCCGCCAGAGGCTGGCTTCAGCCGTTTACGCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099517940.1\|2238295_2239252_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP016808.1\|WP_099517947.1\|2248664_2249264_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP016808.1\|WP_056036296.1\|2246059_2246755_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP016808.1\|WP_099517936.1\|2232070_2233492_+\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
NZ_CP016808.1\|WP_099517934.1\|2229267_2230581_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|214643
NZ_CP016808.1\|WP_172455436.1\|2248034_2248589_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP016808.1\|WP_172455435.1\|2237492_2238299_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016808.1\|WP_172455437.1\|2251122_2254233_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP016808.1\|WP_099517949.1\|2254523_2255903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_172455438.1\|2256022_2257636_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|379107
NZ_CP016808.1\|WP_099517944.1\|2244445_2245996_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP016808.1\|WP_099517935.1\|2230779_2232045_+\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NZ_CP016808.1\|WP_099517945.1\|2246747_2247839_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP016808.1\|WP_099521539.1\|2249492_2251013_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP016808.1\|WP_099517939.1\|2236328_2237360_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP016808.1\|WP_099517938.1\|2235424_2236117_-\|aquaporin	unknown	unknown	gnl\|CDD\|235453
NZ_CP016808.1\|WP_099517941.1\|2239270_2240647_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP016808.1\|WP_099517943.1\|2242663_2244220_-\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP016808.1\|WP_099517937.1\|2233537_2234965_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP016808.1\|WP_099517933.1\|2228333_2229263_-\|DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|378022

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099517940.1\|2238295_2239252_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.07244e-73
NZ_CP016808.1\|WP_099517947.1\|2248664_2249264_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	1.85254e-12
NZ_CP016808.1\|WP_056036296.1\|2246059_2246755_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.83563e-89
NZ_CP016808.1\|WP_099517936.1\|2232070_2233492_+\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
NZ_CP016808.1\|WP_099517934.1\|2229267_2230581_-\|sensor-histidine-kinase	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	6.51281e-25
NZ_CP016808.1\|WP_172455436.1\|2248034_2248589_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.62686e-19
NZ_CP016808.1\|WP_172455435.1\|2237492_2238299_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.24147e-69
NZ_CP016808.1\|WP_172455437.1\|2251122_2254233_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	7.62999e-35
NZ_CP016808.1\|WP_172455438.1\|2256022_2257636_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|379107	pfam13290, CHB_HEX_C_1, Chitobiase/beta-hexosaminidase C-terminal domain.	4.63462e-20
NZ_CP016808.1\|WP_099517944.1\|2244445_2245996_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.000203771
NZ_CP016808.1\|WP_099517935.1\|2230779_2232045_+\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
NZ_CP016808.1\|WP_099517945.1\|2246747_2247839_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.10871e-50
NZ_CP016808.1\|WP_099521539.1\|2249492_2251013_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.32928e-112
NZ_CP016808.1\|WP_099517939.1\|2236328_2237360_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.34299e-19
NZ_CP016808.1\|WP_099517938.1\|2235424_2236117_-\|aquaporin	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	9.0226e-61
NZ_CP016808.1\|WP_099517941.1\|2239270_2240647_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.09614e-29
NZ_CP016808.1\|WP_099517943.1\|2242663_2244220_-\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.15267e-38
NZ_CP016808.1\|WP_099517937.1\|2233537_2234965_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	0
NZ_CP016808.1\|WP_099517933.1\|2228333_2229263_-\|DNA-binding-domain-containing-protein	gnl\|CDD\|378022	pfam08664, YcbB, YcbB domain. YcbB is a DNA-binding domain.	1.51209e-56

>NZ_CP016808.1|WP_099517941.1|2239270_2240647_-|extracellular-solute-binding-protein
MNIKKKAKWVGGFVSVLMLTGLLAACGGNNTTGDNGTGNNGGTAAPAASTAASTDPTQISGTVKVWDWDEAFQKGMIVEFNKKYPNIKVEVTVVNPNDYLQKLQSGIASGSDVPDVILGESAYRGKLFDLGVLDNLEAAPYNFDKSTILDYIVPYVSNSKGEVIAVDQTLTPAGFAYRRDLAKQYWGTDDPAELEKKISTWDDFIAAGKELKEKSADKVLMFPGLGDAFLVLKGQNFASYVNGTEIDLTSKLQKPLNRLFEMRDAGIIGKNELWTPAWSASMAKGEFMFYPMAPWGAKWHISANDPDGSGRWGLLKAPEGGFTRGGTAIGIYKDSKVKDAAWAFIQYAYLSDEGSAFNFKTFGNMTSSKSFYETQKALIDAPGPYDEFFGGQNLAKYFVENIVPDMKGEAQSKYDSVVDSVFNALYPLWMKDGSVTADSALQKFIQETKNKASDATIK
>NZ_CP016808.1|WP_099517940.1|2238295_2239252_-|sugar-ABC-transporter-permease
MTVNAERIIKTSAASSKRRWGPRMWPYLFALPFVLTYAAFQLYPVLYSFVLSLHDWNGIGDKTFIGLKNYVQLWTNDPLFIKSLWNTLIMMAMFIPITLILGLTLAYWTFHLTRGKRLFQTINVLPYITTPVAIGFIFSYMFDWQTGLVNLLLTKFNLLEEGFYWLQDPWGSRAIIALMVIWRNLGYFMIIFMAGMTVIPQDVYEAAKMDGSTGLHTFRKITMPLLRNIIVFLVVTSVINGLQLFDEPKLLYGGWSGSAQVGGPDNTALTIIWKFVDESFGSNTRFGYASAIAYSLFLLIVLFSILSYKLTAPKEDKR
>NZ_CP016808.1|WP_172455435.1|2237492_2238299_-|carbohydrate-ABC-transporter-permease
MKTASMWFCLIVISLLSLFPFYIMIVMGTHYSEDLFKGIPILPGNYLGENLKTVLQADFLKVYGNSLIVSVASVLLATLTSTLIGYAVAKFEFRGRKLLQTFVIITMMVPTQVGLIGYIIEMRHLGVGNTLWPVILVWAAFPFGAFFMIQFMRDSIPTDLLECARIDGCSEPGILLRIVLPIMKPGLATLATLVFLWSWNNYLLPLVTINKSEWYTLPIFISNLGIVHRTDYAARMTALTMTTIPVLILFILGSKTFMKGLTAGAVKG
>NZ_CP016808.1|WP_099517939.1|2236328_2237360_+|alpha/beta-hydrolase
MKIVLKPALMISTILIALILLALFFPTWTPRIKGENSISVLEHVELNGTKQEIMIRGNDRNNPVILNVHGGPGASEIPFAKKMQDLLETKFTIVNYDQRASGKSYHFSEDYSNLSSDLLVKDLLAVTDYITERLEKEKIILIGHSYGTYLATQAASRAPEKYEAYIGIGQMGDTVESEIDALHYVLEQAGQEGNAEDAAQLQQLQEAIENGGALTPRGYVNKYGGASRLTKIPDATLVNLTFTSEYNLLDAIRYNKGMNQSQGILIEEVFKHPLPTLVNKLDLPVYFVMGDYDFMTSSQAARHYFDSIEAEHKEFLPYAESAHYPQYEEKERFVRWMSDTFLD
>NZ_CP016808.1|WP_099517938.1|2235424_2236117_-|aquaporin
MNASFKKCAAEFIGTFVLVLFGCGSAATAGAELGYLGIALAFGLSIVAMAYVIGPISGCQINPAVSLAMLISRKLSGADFIGYVVSQIAGAIAGSAVLYAIIVSAGLPTTGLGQNGFGAGYGIGISALMAFIVEIILTFVFIYTILGVTSTEGNGNVTGLVIGLTLAFVHILGIALTGTSVNPARSLGPALLLGGQALSQVWVFLIAPLAGSVLAVAAYKWLNSYKAKQA
>NZ_CP016808.1|WP_099517937.1|2233537_2234965_+|NAD-dependent-malic-enzyme
MSVTSGASTYMIFRLQIDKQLTSLGDIAAAIERTSGDIVGIDVISSSRTSTVRDITVNVSDQAHSKQIVESLEKLQGVKVIHVSDRTFLVHLGGKIEITSKIPVKNRDDLSRVYTPGVAQVCTAIAEKPNKAYSLTIKRNTIAVVSDGTAVLGLGDIGPMAAMPVMEGKAMLFKEFAGVDAFPICLDTKDTEEIIRIVKAIAPAFGGINLEDISSPRCFEIEERLKQELDIPVFHDDQHGTAVVILAGLLNALKITGKQMSDIKVIVNGIGAAGIACSKMLLAAGVRNLIGVDREGAINRNIPYGNPHWKAFAELTNPHLETGGLSEVIKGADVFIGVSAPNILKVEDVQSMAKDPIVFAMANPVPEIDPELAEPYVRVMATGRSDKPNQINNVLCFPGIFRGALDCRASEINEAMKLAAAQAIASVVTDEELSETYIIPSVFNQKVVEKVREAVIEAAYNTGVARKKWRDSNKE
>NZ_CP016808.1|WP_099517936.1|2232070_2233492_+|aspartate-ammonia-lyase
MSAQFRIEKDFLGSKEVPEDAYYGIQTMRAVENFPITGYRIHEELIRAMAIVKHAAVEANMEIRQLNPETGKAIMQAAQEIIDGKWHEQFIVDPIQGGAGTSINMNANEVIANRAIEILGGTKGDYFNVSPNTHVNMSQSTNDAFPTAIHIAVLVLIDKLLATMEEMLAAFRKKAVQFDGIIKMGRTHLQDGVPIRLGQEFEAYSRVLERDIKRIKQTRGHLYEVNMGATAVGTSLNADPRYIKRVVESLAELSGLPLINAEHLVDATQNTDAYTEVSAALKVCMINMSKIANDLRLMASGPRAGFGELNLPARQPGSSIMPGKVNPVMAEVVNQVAFQVIGNDHTICLASEAGQLELNVMEPVLVFNLLQSLSMMNQVFKVFRAHCLEEIEANVERCKEYVEKSVGVITALNPHLGYEVVARIAREAILTGRSVRELCLLYNVLTEEELQIILDPYEMTNPGIAGVELLDQR
>NZ_CP016808.1|WP_099517935.1|2230779_2232045_+|cation:dicarboxylase-symporter-family-transporter
MKKFGLAFQILVGLVLGVAVGAIFYGNPTIESYLKPAGDIFIRLIKMIVVPIVVSSLVVGIAGVGDIKKLGKLGGKTILYFEIVTTAAIVFGLLIADIFQPGAGVNMTGLAKSDISSYVEATEKVTNNSFMDTFVNIVPKNIFESLVAGDMLAIIFFSVFLGLGIAAIGEKGKPVLSFFQGLAESMFWVTNQIMKFAPIGVFGLIGMTVSKFGIASLLPLGKLVLAVYVGMILFVVLILGLITKLCGTSLISIIRILKDELILAYSTASSETALPKMMEKMEKFGVPKSITSFVIPVGYSFNLDGSTLYQAITALFIAQMYGIHMPISSQIMLVLVLMLTSKGIAGVPGASYVVLLATLGSVGIPLEGLAFIAGIDRILDMARSVVNVLGNSIATVVMAKWEKQYDQNKGQQYLETLKKSS
>NZ_CP016808.1|WP_099517934.1|2229267_2230581_-|sensor-histidine-kinase
MTVTSCKKGGWEVALRDKWLLFLLMVVSVPLAGELNFYPFHNDFRVSLGTPTFFLFLLWLRFPSPFVSGLLVGAAVTFFRTGLEVAIEPARSWDAAFLHHYPVFFYYLTYAVAFRAVRLNRYHNRPIVLGLLGVTIEIAASLAELLMRYSVTEQVVSFSTWNQILIIGIFRSFFVLSLFNLVILRQSRATEELTRKENEKMLLLISELYEESIQLKKTLHNAENIARDSYGLYQSLKAEQPEPLDELAQKALQIAGQVHDIKKDNQRIYAGLSGLISHESDYMPLEALVDIVLRSNQKYARSLGKQIDFSLHMEGVFPLCHVYVSLSLLNNLVVNAVEALNEAGAIRMEVKREQEAVVFLVADNGPGIAPKYREKIFIPGYTTKYDKSGNPSTGIGLAYVKQETERLLGTVQVQAGSDEQGTIFTITLPVGQIGKEE
>NZ_CP016808.1|WP_099517933.1|2228333_2229263_-|DNA-binding-domain-containing-protein
MRFFIIDDDPAVRSMLEQMIEDEDLGSVVGEAEDGAHVDNTLLDLKQADIVLIDLLMPIRDGIETVREISSSFKGKIVMLSQVESKDMIGKAYSFGIEHYITKPINRLEFISVIRKVSELLRLHQSLRDIQKSLSSLGLGGAITEKEAASPDKSIITCGNYVLSDLGLIGEAGCKDLLEMLDYLFRYDNEHPLEQGFPPLQDTYKQLALKKLGPAASETDLKKEGKAAEQRVRRTVNQALTHLASLGLLDYSNPKFEQYANKFFDLSDIRKRMKDLENEEADAASLIRQNTKKFIQVLYFEAKKLMSQR
>NZ_CP016808.1|WP_099517943.1|2242663_2244220_-|response-regulator
MNWVKVMLVDDEVLAIEHMKNLISWQQLGYEIVCTANKPSQVVKLAREHRPDLIIMDIVMPGKDGLALSRELLAEGLVLKIVLLTSYKEFEYAKEALKLGVSNYWIKHEMDAEAVKRELGGLREEIESDKRLRKNDRGRLLIDWLGGRPLSDAQWRTATAEVGAAFDRLHLLVLEPARIMPLLPGTAIGKPEWPTDWPDAGDSSLLAAIPFLESCFVLIYGDKSSRGEGKMRELLEEKAVEARRTIEQLTGRPAAMAMAYGLPNRADVPAKLAEALKWLSQAMFYAPSHLFRLNELRRAEENASVHLDWEEGLAKTKELLPGHQYEAAAREISALFARALAAKDAVGFADLCRQLVAVLNRYRSTCGLPSLAEAWAAGPGTTADWTSLMGIRDWFLTELNALAEATSGLPAVSRKVRQALEQMERHYSDPELDADAIARQLGISRDHFRHLFKLETGQTALDRLTEIRMEKAKLLLDEGNLKVYEIADRVGFRNGQYFSQVFRKMTGMTPLEYMEKRR
>NZ_CP016808.1|WP_099517944.1|2244445_2245996_+|hypothetical-protein
MTVNHTQRYRFSEAPIWHIQREYFEEEGMKAWNNDQVPQYITSNPMIAAAYAEMIFGLLQDRANKGSGSEPVLIVELGAGAGRLAYHVLHELCQLRDYAGIALPPFRYIMTDLAMKNVLAWQEHPALQAFIAEGLLDFARFDAVHDTEISLAVSGTTIREQDLEQPLVIVANYFFDSIPQELIYIGDGQIFEADVFVEYPENRDALKPAELLDQIALHYEHRRAPEYEQADYPYRDVIAVYQEQLEDSHILFPAAGLTCLERLNRLSQAGFLLITADKGDHLLDNWKFAEPPELFLHGSFSLTANYHAIQHVFEQRGAQALFPPHHYKNINVGCILHMDQPMAYSNTRLAYRRFVERFGPDEFFSMKMWVDRHLATMELQPLLSFWRLGGYDAEFFIQSTKQIASLLPDANDEEMQDLLRGIQLMWSSYYVMEQRYDLALDAGLLLFEMEMYEESKHFLEISVQQEQDEVVSTVFYCLAISCFELELDEQALSYIQQFLELEPGHEEALALLGRFE
>NZ_CP016808.1|WP_056036296.1|2246059_2246755_+|response-regulator-transcription-factor
MRRITILVADDEVEIADLVALHLQKEGYYIIKAADGKAAMQAVQSQTIDLAILDIMMPEMDGYEVTRKIREQYHLPIIFLSAKTSDLDKITGLVMGADDYMTKPFNPMELVARVNSQLRRSLQFNQPAVMNKAVLELGGLVISPDQHKITLYGEDVELTPKEFDILYLLASHPKQVFSAESIFKQVWGEAYYESGNTVMVHIRTLRKKLGEDTTKRKFIKTIWGVGYTFND
>NZ_CP016808.1|WP_099517945.1|2246747_2247839_+|HAMP-domain-containing-histidine-kinase
MIKSRRSFRTTMIMLLGLSMLLSGAITYGIYKMLQLYYADVREGDRLALYRRMMREVGDIYVFLILFIPLAIVFFFWFTKRYGTYFNEISKGIRHLANGEFDNRVHISSNDEFNSIAEDLNLASEKLQAAVEKGDFAENSKDQLVVNLAHDLRTPLTSILGYLDLIVKDNQLTDEQIKHYTTIAFNKSQRLEKLIDGLFDITRMNYGKLPVQKEHIDLSELLRQLNEELYPVFEKNRLISRIDVAPELYIYGDGELLARVFENLLTNAARHGKEGLYVDINGHIDTGHVVIQVVNYGGEIPPEDLPHIFEMYYTGDRSRAHQEGGTGLGLFIARNIVEQHEGTLKAESNVVRTVFEVRLPVRS
>NZ_CP016808.1|WP_172455436.1|2248034_2248589_+|VanZ-family-protein
MEQTANKTNKWELFIGAAFIVYLFLLFKIILLKWNLISLDALWHHFKTFLHHPYLIYERQANFKLFDEISRDIEDINGLSISGSIIFTNLIGNTLAFIPLGIFMAELLPSKRALWIKVVLLSFLLSLFFESTQFFLGIGIFDVDDLLLNTVGGMMGYIAWKIVTVGVKVLQPTTARGIKRTSHT
>NZ_CP016808.1|WP_099517947.1|2248664_2249264_-|TetR/AcrR-family-transcriptional-regulator
MTTKSSKMDPRVIRTRQLIREAFLQLIQEYDLEKITVNRLAERATINRVTFYLHYRDIPDMLNQMADNMTTHIRNLLEDVADHSSSAKDEWPELVKLIQHFADHSASYKIMLGSRRLPIFTERLSVLMMDFIKSKIGNHNASSKTITPQIPNDIAAWYGSSAFLGTIVIWLRNDMPYTPAYLAKQLLLMAPFKSIADSS
>NZ_CP016808.1|WP_099521539.1|2249492_2251013_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSTNTVFDSSSIKKGPLLFVLIVGAFVAVLNQTIMSVALPHLMVEFSIEAAVAQWLTTGYMLVNGVLIPITAYLMQRFTTRELFQSAMVIFLGGTILAAMANSFEILLAGRLIQAAGAGIIMPLLMNVILTIFPPDKRGVAMGVVGLAIVFAPAVGPAITGYVMEEYSWRTMFQAIIPVAALVIILAHFYLKNVAERLFPKLDVWGMIFSTIGFGMVIYGFSKAGSLGWSNTEVVVSLTVGIVSLVVFTWQQLRAKSPLLDLRAFKYNMFSLTTIINIAVTMVMYADMMLLPLYLQNARGYTALESGMLMLPGALLMALMMPVSGKLFDRFGAKWLSIVGMIITIGTTIGFVNLTDSTSYNYLLLMSTGRRIGMALFLMPITTAGLNQLPARLNAHGTAISNTIKQVAGAIGTSLLVTVMTSSTKTHLTDTMVTSGTQTASKEMLVHANIQGINDAYLVIVGIGVIGLVLSFFIKSVKQSEEEGVQKPASNKVPAGIGHAKELKNT
>NZ_CP016808.1|WP_172455437.1|2251122_2254233_-|copper-amine-oxidase-N-terminal-domain-containing-protein
MRKMVSALAAFATLFFVLLQPVAQAATTDIKIYIDGQVLQTDQPAIIISGSTFVPLRGIFEALDAKVLWSQKTKTVTATKGDTTVVLKLGARTATINNTTVTLDAPARSIKGRTVVPVRFVSESLGEDVKWDSKTRSVRITTAASVSVGAATSVSVSTVSQNGDGRDLQVNFTPPTDMTNVNSYRILVVPADKASSFNLAKAQIVGGTNYTALPTSSAYQNNVLTAQTRDTDGALLRSNLPYKVFILTVGNNDRYALSSPSASITLSVKSTVDAASNVRISDVSDFGDGRDLSVSFTRASNESNISSYRVIIVKTANASKFDLAAANSLNSSYYTTVSKTGSSTMSTGFSSSARDTSGEYIKNGVAYTAYVLSMSSSVGTTANTLSSASSSVTLGSSSGFNPTITSVADVSNYGDGRDLRVNFNRASDESRISYYRIFVVREADYGNFNLTEANNVASGRYTDVSRTGSSSYSQILSSSARDVKGNSIMNGVAYRVFVMGVTNNSSSYSSTLSTASSSIALYSTGVSSVTNVGVSDVSDYNNGQDLRVSFTRAGDESSLNHYRIFVVRTANASSFNLAAANNITNSSYYTTVAKTGGNINQVLPATARDVNGVLIQNGVSYQVFVLSVGNGSSTSNNALSGSSIPIILSASAVTAAANVAVSDVNELNNGQDLLVAFTKAADEANLNHYRIFVVKTANAGSFNLAAANAVSNANNYTTVAKTGGNISQVLAATARDVNGDLIQNGISYQVFVLSVGAGSSAGTNALSLGSAAITLQAKGVSAAANVVAAEYNGGQDIKVDFTKATDESNIDHYRIFIVKSANASGFDLNAANRITLPDYFTAVNKTDTPSKVLTRNTRDTGGEFIQAGVSYQVFVLSVGGGGSAGTNALSSASAPITLPVPLPPAAAAAAVNATLLASGQDIQVSFTKPADERNISQYRVFIVKEADAGSFNLAAASASNMYTASPAEAILTINKSTSDASGQPLAYDTNYRVYVLSVAKSGANALSDPSAAVQFPTPAAPPATPATPAPDQPTGV
>NZ_CP016808.1|WP_099517949.1|2254523_2255903_+|hypothetical-protein
MLKGWFRVRAQGKSSFTVLSMMLALVVALSVLPSTALADPAPVSVSVSPNLSTVALETNRGIVTQDKVKVTGLINSNSTIVWSNYGKASAETIPAVGTSFSTISNIYTKNLNYNAFVPAADGDILSIVEVDAQSGEVLGYTNLPVGAIHIGTVAPMVDRNYVFPGIQAGYNQFLQGANFYNTPNGVTLSNFISSDTAIAFASPNGWYFYINGVSSGSASISFDAADNLTGDKIRTTIPVSVVSNRQPYLNDNEEYYFTGKALTLSVNPPTAQWVPDSIEVNGVAVPSESYTYTPGVIGQSDGKIVLQASVLSEGDNKIVVKTYDTIDGVYEITLHQSQHSYYMSEPLIDRASGGLNATVKFVRNIENNSYRDKSTVIFQLMNGDVPVDTVSVTTDRLNGYQTNRVHFNLADAATNPNYSVRAFLITGDNADPGNLGYNLVTEVNATEFEQRYQEWRDWD
>NZ_CP016808.1|WP_172455438.1|2256022_2257636_+|S-layer-homology-domain-containing-protein
MKIRTWSLTLIIGLCLSLFPSSLWAAVSVNPVTGSIHPGSQINITGTSDLSEVIIKVYRPDRSILYFNVAKVSNGAYSDSITLGANEVVGTYEINVGQADQISSANVVVTESQTAAIPVANPASGAVAAGTSVTLSSSTAGAAIYYTTNGSNPTTSSTLYSGPIVVNSALTIKAIAVANGKTNSEVMSASYTIAASTGGGGTGGGGSTTVPSTDKVISTNGNLTLPVGRTGEVSLNSEVIVSIPANATAKELKITITKLQNVQGLLTNQETLASSVFEILKNFTENFSNPVTLTFTFNKASLKSNQKASVFYFDEVKKAWVEVGGTVSGNQITVAVDHFTKYAVMAVAQPIVDPINPAQEFNDIFGHWAEANIKKAIGAGIVSGYPDGSFKPNATVTRAEFAVMLMNTLKPEEEGPALTFTDTATIGAWAQKAVAQAVQAGITKGYADGGFHPNAKITRAEMTAMLANAAGIPADENAATGFADDKDIPAWAKSGVAYAKQAGIVQGKGDNQFAPQAYTTRAEAVTVLLNILALQSK

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Crispr_ID: NZ_CP016808_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_8

3420862-3421129

Orphan

Consensus_repeat	Method
ATCGAGANCNGATCGAGAACNGAT	CRT

5 spacers

The CRISPR arrays of NZ_CP016808_8

>merge|NZ_CP016808|8|3420862-3421129|CRT
ATAGAGTGGAGAGCGAGAACAGATAGTGAAAGCAGATGGAGAATAGATAGTGAGCCAATCGAGAGCTGATCGAGAACTGATAGTGAGTCAATCGAGAACAGATCGAGAACAGATCGAGAACAGATAGTGAGTCAATCGAGAGCTGATCGAGAACAGATAGTGAGTCAATCGAGAACAGATCAAGAACAGATAGTGAGTCAATCGAGAACAGATCAAGAACAGATAGTGAGCAAATAGAGAGCAGATCGAGAACTTATCGAGAACAGAA

>NZ_CP016808|8|6|3420862-3421129|CRT
ATAGAGTGGAGAGCGAGAACAGAT	AGTGAAAGCAGATGGAGAATAGATAGTGAGCCA
ATCGAGAGCTGATCGAGAACTGAT	AGTGAGTCAATCGAGAACAG
ATCGAGAACAGATCGAGAACAGAT	AGTGAGTCAATCGAGAGCTG
ATCGAGAACAGATAGTGAGTCAAT	CGAGAACAGATCAAGAACAGATAGTGAGTCA
ATCGAGAACAGATCAAGAACAGAT	AGTGAGCAAATAGAGAGCAG
ATCGAGAACTTATCGAGAACAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099518745.1\|3440671_3441646_+\|CehA/McbA-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236311
NZ_CP016808.1\|WP_150131554.1\|3416474_3416708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099518744.1\|3439520_3440306_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP016808.1\|WP_099518731.1\|3409935_3410523_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP016808.1\|WP_099518730.1\|3408706_3409864_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274414
NZ_CP016808.1\|WP_099518742.1\|3436678_3437656_-\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
NZ_CP016808.1\|WP_099518741.1\|3428952_3436401_+\|InlB-B-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380193
NZ_CP016808.1\|WP_056043601.1\|3426777_3428412_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP016808.1\|WP_099518732.1\|3410637_3411282_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP016808.1\|WP_099518734.1\|3414017_3414857_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016808.1\|WP_099521616.1\|3424846_3426001_+\|DUF2264-domain-containing-protein	unknown	unknown	gnl\|CDD\|378358
NZ_CP016808.1\|WP_099518735.1\|3415049_3416459_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP016808.1\|WP_099521615.1\|3413084_3413987_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP016808.1\|WP_046229112.1\|3426404_3426686_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP016808.1\|WP_099518737.1\|3419101_3420748_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP016808.1\|WP_099518743.1\|3438080_3439472_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240539
NZ_CP016808.1\|WP_099518736.1\|3417255_3419109_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP016808.1\|WP_099518733.1\|3411509_3412745_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP016808.1\|WP_172455503.1\|3421205_3423239_+\|heparinase-II/III-family-protein	unknown	unknown	gnl\|CDD\|179798
NZ_CP016808.1\|WP_099518740.1\|3423584_3424739_+\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|369381

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099518745.1\|3440671_3441646_+\|CehA/McbA-family-metallohydrolase	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	4.25127e-11
NZ_CP016808.1\|WP_099518741.1\|3428952_3436401_+\|InlB-B-repeat-containing-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	1.80791e-24
NZ_CP016808.1\|WP_099518744.1\|3439520_3440306_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.52407e-72
NZ_CP016808.1\|WP_099518731.1\|3409935_3410523_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.06317e-13
NZ_CP016808.1\|WP_099518730.1\|3408706_3409864_+\|ABC-transporter-permease	gnl\|CDD\|274414	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	3.5146e-21
NZ_CP016808.1\|WP_099518742.1\|3436678_3437656_-\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	1.6086e-87
NZ_CP016808.1\|WP_056043601.1\|3426777_3428412_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP016808.1\|WP_099518732.1\|3410637_3411282_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.06568e-41
NZ_CP016808.1\|WP_099518734.1\|3414017_3414857_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.18539e-80
NZ_CP016808.1\|WP_099521616.1\|3424846_3426001_+\|DUF2264-domain-containing-protein	gnl\|CDD\|378358	pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264). Members of this family of hypothetical bacterial proteins have no known function.	1.40488e-157
NZ_CP016808.1\|WP_099518735.1\|3415049_3416459_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0553e-49
NZ_CP016808.1\|WP_099521615.1\|3413084_3413987_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.57981e-84
NZ_CP016808.1\|WP_046229112.1\|3426404_3426686_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.45936e-47
NZ_CP016808.1\|WP_099518737.1\|3419101_3420748_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.10558e-45
NZ_CP016808.1\|WP_099518743.1\|3438080_3439472_+\|MATE-family-efflux-transporter	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	6.96728e-77
NZ_CP016808.1\|WP_099518736.1\|3417255_3419109_+\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.08823e-45
NZ_CP016808.1\|WP_099518733.1\|3411509_3412745_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.63261e-95
NZ_CP016808.1\|WP_172455503.1\|3421205_3423239_+\|heparinase-II/III-family-protein	gnl\|CDD\|179798	PRK04239, PRK04239, DNA-binding protein.	0.000130958
NZ_CP016808.1\|WP_099518740.1\|3423584_3424739_+\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|369381	pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.	4.52431e-13

>NZ_CP016808.1|WP_099518737.1|3419101_3420748_+|AraC-family-transcriptional-regulator
MVKVMLVDDDYPVLDLLAFAIEWEELGFRLLGMHENGEVALAAALEEMPDILITDIGMPRMDGLELIRRLKERKPELRVAVLSCHDEFRYAQQALKLQVQDYLLKDTLDPSDIRKLLLQFQAELNVTKDLHMEQLRKEHMVDRNKALLKEQFIKATLHQPMLDPEKWQQELGAFGLPFGACERVIPVLGIIDDYPRALQRFRSEEVLRFVVDNVTREVMASRETGCPAAHFVYSPQESFFMQVCPHGLKINGFDEVKLLLAEVQRMLKSSLKLTMSFLIGDSASDPLSLRESLAELLSGAEARFYRAPGSIVKAGAVQAAQPAKPGSDNPLLERFGEAAELLREALLGHKREAAEELVRQWLSLAEQRRLPPEQVKDWVFKLLLDVKLKLQLMQHTRSASSIDVSHHEVWELGSLSELQAWLIAHCLSAITASENGVSGSKRAEVIDACEYVSQHLDKKISLDEVADQLFMNPSYFSRLFKKEMGETFIEYVIRMKMHRAKELLDQTGSPVGKICETLGYDNQSYFIKLFKSCTGVTPVEYRRGQKRL
>NZ_CP016808.1|WP_099518736.1|3417255_3419109_+|histidine-kinase
MSSQWLSLLRLRSFRYRLMVAAVVCLLLPALITLAVYNMLTKDAMKQEAVTQSQQKLELVDGYVSNLFNYMFYIANNVQLDSEMNRIMKAIASGKTYEGASAEYDRYLDRMKIMNKIENMTVVGDKAYVTILLKDGTNFANYSFDEYDPGLFREEPWFAQLNGLSGLQSFWPGATPTVFDSDKSRSPYQLSIARALRGDSVNPYGYVIVTILETKVSDIFRKIELEQETMLLGSEDHILSHPDATRVGEIFPYATLASEKSDPHILQIENEDYLMAWHTNSLTGWKLVSLTPYDRAVFKLNVIFKRVFTFQLVSFCLFMVLLLYLLGKFTRPLVRLGRVAETVQRGNLEVRSGIRGEDEIGYLGQSFDLMLDKVKETIGEITKTQVRKRKAELAMLQAQINPHFLFNVLNSIRMKVLRKGDSESAEMISSLSKLLRMTISQDKGVIPLHEEVDLAIDYVRLMNMRQKEKVELTLDLSPLSLTALVPRFCLQPIIENALIHGFSQQAGLMTISASEAEGGYQITVSDSGQGIEKGKLERLRYKLGAEALDKLEQGAAGEEESETGALAGKFSGIGLVNVYERMGITYGERFQMTIDSDIGQGTVITLYIPKQVVDSDG
>NZ_CP016808.1|WP_150131554.1|3416474_3416708_+|hypothetical-protein
MEESLLRKRWASDRRYRQISFAYSKGNGRNLTIKASANASPVQSYCYADLFTTRVKGIGRSAELLLHFFLPETAENQ
>NZ_CP016808.1|WP_099518735.1|3415049_3416459_+|extracellular-solute-binding-protein
MFRKMKWLSLMLMSIMMVAAGCSSGGNAESGGAAASPAASSSTESPAQGAADEEVTIKLHTFGNEASYNWKQTIAAFEEKNPNIKVDVVVLSEKGDTQEAIQKLDLAASSNEQMDVIMFSDPAGYAQRVGLGMVAPIDDFIAKEGFKVNEEYKVDTMLDGKYYALPGKFNPWYVLLNKTQLAAAGLDVPTEWTWDDFMSYAKTLTTGDGASKHYGTYFHGPQNGGWMEFLKLALANQPDNTEFLKADGTSNLDNPLMRKTLELRVQMEKQDKSASPYTDMISQKLHYRNQFFNQAVSMIMIGSWMNTELGGTEQFPLNFEVAVAPIPKNAAADEGGYTMVTTDYVSVAASSKHKDAAYQFVRWYTTEGQIAQGKNVPSWNGIDDSQLESIIDTILSGTANPEKVDKQSLLSVLKNAKSSKIIPPVTYQAEIYKVINEEYEKLIFDQQDVDQTIAAMQERVQQVIDSNKK
>NZ_CP016808.1|WP_099518734.1|3414017_3414857_+|carbohydrate-ABC-transporter-permease
MNQKTINTVRKSIFTVLMMGMSILFLLPFVWMLSTSFKIEADVFTYPIQWIPKTWHVIENYKEVWNGQFPFYKYYLNSIKITVVTTILSCIVSALAAYGFSKIQFAAGKYLFLIVLATYMIPQQAILVPQFILYRSIGFFDSHAGLILLGSFSVLGTFMLRQFFMGVHNEYIESAKIDGAGHARIFMQIAFPLVRPAVATYAILRFIWTWNDYQNPLIFLRTDSLYTIQLAMQKFTTINGEFYSLIMAAAVSSIVPLLIIFVIGQKSVIEGIALGGVKG
>NZ_CP016808.1|WP_099521615.1|3413084_3413987_+|sugar-ABC-transporter-permease
MAARRSSGAIQRKETLAGFLFVGPMLIGVTVLTLLPILATFGLSLADWNFIAGFDGLKWVGFDNFERLAKDAAFLKSLKNNAYFLLTVPAYLAVSMFLAIMIDKHVYLKGYFKVAYFMPYISSIVAVAIVWQVLFHPSAGPVNQLLMALGIENPPKWIADPKYALPSLMMITVWTAIGFNMIVYIAGLQSIPRDLYEAADIDGANAWVKFKSITFPQLSSTSFFLLVTGIISTFKVFDLIAILTKGGPLSSTSMIVWYLYDTAFVNLKIGYASSMAVVLFACVLLITLLQWVGQKKWVNY
>NZ_CP016808.1|WP_099518733.1|3411509_3412745_+|MFS-transporter
MSTNQAAIRPANVAATTFFPILFAASSVHLLNDTIQSIVPALYPVLKDSFSLTFSQIGFISLIINLTAAILQPLIGIFTDKRPIPRLLPIGILFTLAGVLVLSFSAYYWMILAAVMLIGIGSAIFHPESARVAYVAGGARKGLAQSIFQFGGNIGQALAPIMTAMLFVHTGQKGVVWFSLLLVVGFMLQSYVARWYTKHLKAEKERKGTVQNHPFARSGLSKARVAVAVTIIMILVFSKYVYISAITSYYSFYAIEKFGVSTSQAQLILFVFLVANVIGLLFGGMLADKFSRRALIWFSILGTAPFSLALPYANLTLSVILIFFAGLILASAFSIIMVYTNELLPGKVGLVSGIFFGLAFGLGGAGSAILGNLADATSIVFVIQCCSYLPLLGLFTVFLPSDKKNKPLQAA
>NZ_CP016808.1|WP_099518732.1|3410637_3411282_-|GntR-family-transcriptional-regulator
MPIPTNYSSPLRISAKDRALAQLQKWIIEGTLQPGEKLIDGELADALGVSRTPIREALQLLEVQGLVQMLPSKETRVTMIEEEDMPKLYAPLVALHALAAELAVPHIQPEHITRLSELNAQFAKCIQENKPYEALEYDEEFHNVILELADNAYIQSFTSSLQMHIRRYKYLFIKRPASIAQVGVKEHQAIIDALEARDAEAASLMMKKNVSIHT
>NZ_CP016808.1|WP_099518731.1|3409935_3410523_+|TetR/AcrR-family-transcriptional-regulator
MKAADIDVKMRILLAAKKLFAAQGFDRTSVRQICEEAGANVALISYYFGGKDNLFFALFEAFFPSRGIASIAQDMEPLEGMKLVIRELLTFRYQDAELSYIIQCEFALLTPRIEMIQERVLPLWQLIHKWLLEGREQGIFEFNSIHMAFTAVSSTLLFPKGNIHMLVLMGEDTTTLEERIADTTTFILKALKPSE
>NZ_CP016808.1|WP_099518730.1|3408706_3409864_+|ABC-transporter-permease
MKNTIQAFMKRPTTIVGIITALMFQIVFSVIWMTGYNGVTDRIDKLHIAVVNEDQQFGTQIAGSLVSSLPFQMSQPSSLEDAKQQLNARELQMIIYFPADFTQKAMAADGKADIGYIINESNPALIKSIMSGVAAEVTKEANVQAIEQGIAGTLGKAGVPTEQAAIAGQSLAERITANIESTNQVKGMNNQMVPMMMVLASYVGAMIMGMNLEQSSMMVSAGAGRWKRFAARSIITAGSAVFVSLIGSSLLAAFNGQMEQGFLKLWLFQLMFVLAFMFVSQMFLYVFGMAGMLFNIIALSAQLVSSGAIVPRELLPDFYVKLGEALPATYAVEGLMNVLFGGTGIGSEVAALAIIAIVGFVISMAAVGLKKQAAMKPGQMAMKSN
>NZ_CP016808.1|WP_172455503.1|3421205_3423239_+|heparinase-II/III-family-protein
MEQKKQQQQQQQQQQQQQQQQQQQLPLERRFAVRFSGQLYLPTERQRGLALLVKGEPLSAGQLGEAWYDTLREAEVQRPLVEEIRAEAQRQLASVEPELSETLFRMYGETGERLPYERVYFQKRRRLNSFALMSLIEAEEPQYLEALQAALWSICEERAWCLPAHLGGAEQQTPIDLFAAETGFALSEISVLLGPRLPEELHLRIHEEVEKRLFLPFLTEGPYFWERAEHNWAAVCAGSIGAAALHLMDDRERLEAVLSRVLAAMDCFLDGYGEDGACAEGYSYWQYGFGFYVYFAQLLKAATDGAIDLFRSAKVQEIAMFQQKCFTGGRSIVNFSDAPSESGIFMGLSSYLHQEFPAVALPHASLRDSYTGDHCARWAPAVRNLLWWAESETPTPTTAPMTTTARTTTRTTTTSESAERLSGLENAAALWPTESFYLENVQWLLSRYVAANGATYSFAAKGGHNAEPHNHNDVGQFVLHADGEAYLADLGSGEYTADYFGPLRYTIWCNGSHGHSVPIIGGARQREGADARAVVVQAATSAELDVLELALQAAYGEEAGLAVLGRRFEWNKKGALPVLTIRNRYRFREEVEGGREIIERFVAWQMPEAGEAGGVVALQGRKRLTIAFDAQQWKPVVTQRSDMDHFGRERQWYTLDFHHLEAGTAAVDSEFVFRFEP
>NZ_CP016808.1|WP_099518740.1|3423584_3424739_+|glycoside-hydrolase-family-88-protein
MTVQEKMQEQQNWVNEAWDKVNQKIGRTSGRIGSQFPHASVNGVYVLEPAHWWTAGFWPGLLWLLYQDENSRTERYKELAEACELKLDEVIMGYDRLDHDIGFMWTLTSVARYKLLGEDDSRRRALLAANLLCGRFNIQGRYIRAWNPWREGERNDGLAIIDCMMNLPLLYWASRTTEDPRYKHLAMAHADTVLEHFIRPDGSVYHIVEFDPQSGEAAAKHGGQGFAAESAWSRGASWAIYGMALSYAHSGEQRYLDAAKRTAHFFLANLPEDSVPHWDFRLPDGVEPYRDSSAGACAACGLLAIADVVPEVERELYRSAGERILKSLYENYGAWADDGQEEGLVLHGTSHYPERKNLDVPLIYGDYFFTEGLSKLRGYDSFWS
>NZ_CP016808.1|WP_099521616.1|3424846_3426001_+|DUF2264-domain-containing-protein
MRLAEERKYWVSELCRVAEPVLRLLAARELKKTMPVQSAAGQDRSDVTHLEALGRLLCGIAPWLEGSGGADEEEERLRQQYAELSRGAIAAGCDPESPDYMNFAEGYQPIVDTAFLAQAILRAPTELWDKLDAKAQKHVVQAFKLTRSRKPFAMNWLLFSAIIEAALYRMGESDWDPMRIDYALKQHEQWYVGDGAYGDGPSFHFDYYNSFVIQPMLVDIVAAVQGCYEDWDAMHASIKERAKRWAEVQERLISPEGTFPPLGRSLAYRCGAMQSLAQSALLGELPSSVTPAQARCALTAVIRRSLSVPGTFTADGWLTIGFCGSQPNIGEHYISTGSLYLCAAVFLPLGLAAEHPFWSGEPEDWTARKAWSGSFFTIDHALKG
>NZ_CP016808.1|WP_046229112.1|3426404_3426686_+|co-chaperone-GroES
MIRPLGERVLVEAIAKEETTASGIVLPDSAKEKPQEGKVVAVGSGALKDGVRVALEVKEGDRVLFSKYAGTEVKYDGKEYLIMKESDIHAIFE
>NZ_CP016808.1|WP_056043601.1|3426777_3428412_+|chaperonin-GroEL
MAKDIKFSEDARRAMLRGVDALANAVKVTLGPKGRNVVLEKKFGSPLITNDGVSIAKEIELEDAFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMVIRKGIEKAVKAAVEELQNIAKPIEGKQSIAQVAAISSADDEVGQLIAEAMEKVGNDGVITVEESKGFVTELEVVEGMQFDRGYISHYMVTDTDKMEAVLDNPYILITDKKITNIQEILPVLEKVVQSGKQLLIIAEDVEGEANATLVVNKLRGTFTCVAVKAPGFGDRRKAMLQDIAALTGGQVITEELGLELKSTTVEQLGSARQVRVTKENTIVVDGSGDASDIAARVSQIRTQLEETTSDFDREKLQERLAKLSGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALINVYKAVAAVNAEGDEQTGVNIVLRSLEEPLRTIAANAGQEGSVIVERLKNEEIGVGYNAATGTWVNMFEAGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPKGAGGGMPDMGGMGGMGGMM
>NZ_CP016808.1|WP_099518741.1|3428952_3436401_+|InlB-B-repeat-containing-protein
MKQVIKQAWKLKSPLLAWMIAISMVMSLLPVPQVAASEPSGFQNMNRTIEFQDVSSTDWFYDEVVYVQQNGLFNGTGEDTFSPNGTMTRAMYVTALGRMAGVDIREYPVSSFADVQTGVWYAPYVEWAVKTGITVGTGNQSFSADATITREQMATMTLRYFEHYQIPYQTSNFITTAPADLASASPWAANAIVKLWQAGLFVGDKNSNFKPHAQATRAEAAATFMRSDAIVKEWQGQNQPTTTPAPTSTPTPEPSSNSGAGGGNSGNNNGGNGTKYTLTFESNGGSAVTTLTVPQGEALSKLPVPTKDGFIFQGWFRDSDLSLIFAEGSSVTADTKLYAKYIDQVSNAVQSIPSYSVMDVAPGFTITVNDASGNLTAEEVKAGMTFVDTADPDFTGISVIGMTGTFNVVSAAVDGRFEEGHTYQLTLTNDSLSFQGQDATTRIYVFSVAKEEVMNIPLNPGMIYLPFAEVRDMMLDGADVSSPVIPVVTTTVGGSETGLAAANASSGTFTYTGSAAIQVGDVVAIYEGVQPNLRTVDTTGADDGDVAYVQITAINSNTYTYDHADSKQVLFKPDVLPVSVEADLDEERDNNSITIAHSAMNYSDSEYAPLGLSELTTVDVGDFIAFYEGELIEESSKVIAYGRITSITSAMENDIITYTDATEEDIKHVFDIYQQQAIDGDLLLSKEDIAKLEDQIEQQAIASGFVDQAADYLSTLAMETNAFKSQKEVSMLSASNDVGEVSVENLTVKASLGTTVKNIAGQNSGVSATLQVGADIVIRIHEESDLVIHMTGTFLEEISLNLGVNGETDWGEACLWRICIPYPEDYRVTVNLDAYTYTGINMTAKIATVEHDKLEDALDDWDKANTGGVLGDVRDITTEIQALMEGVQDTGVDASTLQEQYKEMMENETDWVPLIKEELFEVSKNVAYGIIEVNFKAEFVVTGNVNLTLGLDFNYTTAKRYSATLFVLGLRGTSSTVPLKGDGNYQFTFYVMGTLGLKAGINLELKAGVGSVDLNSIGLTVEPGAYVNLWGFFYSQLKQLNGVKSARSLGAMYVEIGIYLESAIGVQLGDGMLSASVPVYENKWPLYTGGAEKNVFDFAYPQDDKLGITLAGKASSLNLPTKLVTMSLFDLKTGDISEEMYLEHGKFSIDPAKFDVQLDNPNFSYNKERRVIRVVDTSVPVSTGNLVITWKDSPLTFNAAPLKRTIPLTWFARVGDYTLQLDPQNGEMTEVIAAAYNAPLRVTTPIKPGYTFDGWYTEASGGQKMTIPSQMPAEDRNLYAHWIVNTNTPYTVEHYLIDPNTGTASSPAYTETLTGTTDTEIRMTADRFNDQGYRNSTVSGVYIKGDGSTVARLYYTPANRTMSFNLGYTGPQIFKVTEQFGKNIAARIPLIPTRLGYTFAGWTPEVPRTMPTSDTTYTAKWIAREDISYQVVHLHQNISSNTYTVADTESYRGTTGTEVDLMTIQPKSYENFTVDYSNPGTVLKSKIAGDGTTTLKVFYKRSNYKMTINYNGAGMETSEVDVPYGATTSLRLGNPIREGYTFAGWLPAPPQAMPNHNVEVTAQWKPNSYTVSFNVNGALQEVADQTLGYGDKVIEPAAPTREDYVFGGWYRDSTLKNAYNFATAVVTDNMTLYAKWNEFSYKVSFDSSGGTAVPDQTVKKGAVASIPTDPTRAGYEFAGWYRDTELTNAYDFTTAVVTGDITLYAKWNEISYTVSFDSSGGTSVPDQTVRKGALAVAPENPTQEGYVFDGWYRDHALTSAYNFMTAIVTDDITLYAKWIMKQQDSLTVTFDSNGGTPVAGQTVQKGSIVGIPTSPTRAGYSFEAWYSDSALTNAYNFSTRVDTGELTLYAKWYRHSYSVTFNRNGGTTVPGQTVLGGDMAIEPVGFTREGHTFAGWYSDSALTNAYNFTDPVVRNISLYAKWTRNSYTVSFDNNGGGQINSVKVNHGSTIDIPGNPGREGYVFAGWYIDPALTEAYNFKTTYVNNDFTLYAKWTVNYTVSFETNGGSAVANQSIVHGETATVPNSNKDSYALEGWYIDADLTEVYDFKTPVTNHITLYAKWITGSYWITFDSNGGSSVGGERVPTGGKISKPSGVYYAPRLEGYVLAGWYSDSSLTNPYDFDTPVTADMTLYAKWVPSPWEAIGSPTGEYSPRYAIDSKGNIFVTYQQGSFVIVKKLENGGWIEIGSSGDSNVTMGSPDIAIDSNDTIYIAYSLKDGNYVDYYTVVRKFDGFNWDTIGSPTNGLVNKKNPKISLDGANNPYVVYTSAGDESRLQGVVKYDGANWVSVSGGVDLSKGAYYQPDITFDKNNTPYLFFQNSEKAVLKYEDGAWKDIIIDKSSGGVGAGSSSVAFGLNNELYFAYSGNNVIGLAQYTGPDGEPVAISHSLQTSSRGLGIPMVVDSNGTLYIAYNDLANGNRLTVMKYDGSWHPVGEAAISGDMPDYLQLIIDSQDNIYVMYQEISNQGEVKTFVKKYEPSLDLVSP
>NZ_CP016808.1|WP_099518742.1|3436678_3437656_-|tRNA-dihydrouridine-synthase
MSNEQNFWLDLPKPFFILAPMEDVTDVVFRHVVSEAAKPDVFFTEFTNTESYCHPLGKDSVRGRLTFTEDEQPIVAHIWGNKPEFFEQMSMDMKKLGFRGIDLNMGCPVQNVASNGKGAGLIQHPEVAAEIIQAAKAGGLPVSVKTRLGYHNIDEWRDWLGHILKQDIANLSIHLRTKKEMSKVPAHWELIPEIKKLRDEIAPNTLLTINGDIPDRAAGLKLVEQYGVDGVMIGRGIFTNPFAFEKEPKEHSPKEFLQLLLLQLDLHDKYSQEILPRSFKPLLRFFKIYVRGFRGAGELRNQLMETKSTDEVRLLVKAVLEQELD
>NZ_CP016808.1|WP_099518743.1|3438080_3439472_+|MATE-family-efflux-transporter
MGKRTIGKSEFTREMKGLVVPSVLQMLVANSFSLVNMLMVTSLGDGAVAITAAAGRISFILSMILTAVYGMTAYMTQYYGKQQYTLLRATFGFMLLTGIGISLLAFAAVSIWKESILFLFIKDAELMPLGIQYVTIMAFVFLISAIRDAYAQALGSIGKVKITLYVGLCAMAVNITLDYGLIYGRLGLPKLGVAGAAWGTLIASGASLLVLLVFIYSKSYYVNIRVRELFSLPLLLRKQVLKTITPLVFHEGMWSIGNMLYAVAFGAMGIAALTTFQLGNTLQGYFMMGIHGFAYAAKVMIGQKLGQDEPEQAMDYARRFTRISVIAGIIISVVIIMVSPFAALIFPHLSAEVHASLGNVLLLQALAMTAFFLNNVWIVGMFRAGGDNLFTMNMILITTWAIALPAVFVGVYLLHLPLEWVYALFLCEEISKALIGYKRYRSQKWMRNLAGPSPEAPAAAASL
>NZ_CP016808.1|WP_099518744.1|3439520_3440306_+|DeoR/GlpR-transcriptional-regulator
MSLAGEERKLSIMNLLNEHGKVIAGDLARMFEVTTETIRRDLDELEKENKLKKVYGGAIKLKVEIEPTLFERAFTNQEAKEKIGYLAFTLIDDHDIIFIDEGTTPLQIIPFLSQKKEVTVLTSSISAMMALIELKKREQFDGRIIMLGGEVNVKHSRVTGAIAEANMSDIFVNKAFVTVDALSIEHGFTSYDYEKATLTRKWIQQSETSIILADSSKWNKRSMVKICDFENVDIVISELEPPAEWKTQLEEKNTRWMMPTE
>NZ_CP016808.1|WP_099518745.1|3440671_3441646_+|CehA/McbA-family-metallohydrolase
MKDAVYLDKSKRKYKGNLHTHTTWSDGSQEAEDVVAAFKAKGYDFISITDHDIYARTADYDTESFVVLPGMERGGLNLVPDEDPGYHFGVLDDPTMRPEKERFQHLQAFEVPIPWEGPQSPQKLIDEMKAHGNLVIFNHPEWHLTRFEDMVQYDGFFAVEIYNHATEWTPSSSYGAAYWDHALQNGKRVFGIAADDSHEHDQGSKISEYGGGWVCVEAEEPTQQGIITALKNGQFYSSSGPEIVDYRVENGVVHVECSPCQYIMFKAFPLRGPFLVERETGELMSSGSMKIKQGMQYIRVECVDEKGRIAWSNPIFVADLAEGK

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Crispr_ID: NZ_CP016808_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_9

4234137-4234234

Orphan

Consensus_repeat	Method
GCTTACGCTTAAGCTTCGTGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016808_9

>merge|NZ_CP016808|9|4234137-4234234|CRISPRCasFinder
GCTTACGCTTAAGCTTCGTGAGCAGAAGCAAGCACTTGAGGCCAAGCAGCGTGAAGGCGAAGCAGCTCGGGGAGAGCTTACGCTTAAGCATCGTGAGC

>NZ_CP016808|9|8|4234137-4234234|CRISPRCasFinder
GCTTACGCTTAAGCTTCGTGAGC	AGAAGCAAGCACTTGAGGCCAAGCAGCGTGAAGGCGAAGCAGCTCGGGGAGA
GCTTACGCTTAAGCATCGTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099521675.1\|4222805_4223192_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100011
NZ_CP016808.1\|WP_099519339.1\|4224128_4225052_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
NZ_CP016808.1\|WP_099519349.1\|4243724_4244855_-\|CotH-kinase-family-protein	unknown	unknown	gnl\|CDD\|378045
NZ_CP016808.1\|WP_099521676.1\|4241507_4242770_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP016808.1\|WP_056034370.1\|4235276_4235957_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP016808.1\|WP_099519348.1\|4242798_4243716_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
NZ_CP016808.1\|WP_172455548.1\|4225291_4226095_+\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NZ_CP016808.1\|WP_172455549.1\|4245209_4245986_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP016808.1\|WP_056034380.1\|4237048_4237426_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377198
NZ_CP016808.1\|WP_099519335.1\|4218772_4220095_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|214621
NZ_CP016808.1\|WP_099519346.1\|4240068_4240491_+\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|226289
NZ_CP016808.1\|WP_099519344.1\|4236468_4236840_-\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|259980
NZ_CP016808.1\|WP_099519336.1\|4220418_4221867_+\|CopD-family-protein	unknown	unknown	gnl\|CDD\|224195
NZ_CP016808.1\|WP_099519337.1\|4221889_4222750_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP016808.1\|WP_099519345.1\|4237627_4239997_+\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP016808.1\|WP_099519341.1\|4226510_4227542_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP016808.1\|WP_099519342.1\|4227566_4230011_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP016808.1\|WP_099519347.1\|4240606_4241137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099519338.1\|4223313_4223889_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP016808.1\|WP_172455547.1\|4220072_4220237_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099521675.1\|4222805_4223192_+\|RidA-family-protein	gnl\|CDD\|100011	cd06154, YjgF_YER057c_UK114_like_6, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.21765e-62
NZ_CP016808.1\|WP_099519339.1\|4224128_4225052_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	1.66938e-48
NZ_CP016808.1\|WP_099519349.1\|4243724_4244855_-\|CotH-kinase-family-protein	gnl\|CDD\|378045	pfam08757, CotH, CotH kinase protein. Members of this family include the spore coat protein H (cotH). This protein is an atypical protein kinase that phosphorylates CotB and CotG.	1.31857e-76
NZ_CP016808.1\|WP_099521676.1\|4241507_4242770_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.52785e-09
NZ_CP016808.1\|WP_056034370.1\|4235276_4235957_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.56768e-64
NZ_CP016808.1\|WP_172455548.1\|4225291_4226095_+\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	2.08701e-28
NZ_CP016808.1\|WP_172455549.1\|4245209_4245986_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.21859e-05
NZ_CP016808.1\|WP_056034380.1\|4237048_4237426_-\|phage-holin-family-protein	gnl\|CDD\|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	8.83482e-14
NZ_CP016808.1\|WP_099519335.1\|4218772_4220095_+\|VWA-domain-containing-protein	gnl\|CDD\|214621	smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.	2.19547e-09
NZ_CP016808.1\|WP_099519346.1\|4240068_4240491_+\|DUF350-domain-containing-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	1.2451e-32
NZ_CP016808.1\|WP_099519344.1\|4236468_4236840_-\|cupredoxin-domain-containing-protein	gnl\|CDD\|259980	cd13913, ba3_CcO_II_C, C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea, which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead, they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively.	1.71888e-17
NZ_CP016808.1\|WP_099519336.1\|4220418_4221867_+\|CopD-family-protein	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	2.08713e-19
NZ_CP016808.1\|WP_099519337.1\|4221889_4222750_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.12509e-35
NZ_CP016808.1\|WP_099519345.1\|4237627_4239997_+\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP016808.1\|WP_099519341.1\|4226510_4227542_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP016808.1\|WP_099519342.1\|4227566_4230011_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP016808.1\|WP_099519348.1\|4242798_4243716_+\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	7.25174e-159
NZ_CP016808.1\|WP_099519338.1\|4223313_4223889_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.26137e-18

>NZ_CP016808.1|WP_099519342.1|4227566_4230011_+|phenylalanine--tRNA-ligase-subunit-beta
MKISYQWLNEYVDLSGFTGAELAEKMTRGGIEIDEVESRNKGVTGVVVGYVKSREKHPDADKLNVCKVDVGTGEELQIVCGAKNVDAGQLVPVATVGAKLPGDLHIKRAKLRGVESQGMICSAKELGINDKLLPKEQQEGILVLPPQTVIGTPIADVLGLNDEVLELDLTPNRSDCLSVIGTAYEIGALTGREVRIPEPAIAHASERTDSHVQVTISAPEQCFHYSARYIKGVKIGESPLWLQNRLIAAGIRPINNVVDVTNFVLLEYGQPLHAFDADQVKSGRIDVRLAHEGETMLTLDGQERRLEPQMLVITDGEKPIALAGVMGGANSEVTGDTVNILLESARFDGGTVRKTSRQFGLRSESSIRFEKEVDPGRVIPALNRAAALIMELAGGLATEGIVEVTTAPAKQQVVEVALAKINRYLGTSLPCLEVQTILNRLSFGYSVGEDDVFQVEVPSRRGDISYDVDLIEEVARLYGYDNIPTTPIFGDVTPGALTKPQAIRRELRKRLTDAGLHEVISYSFTGPERTQLFPALSGEATKAVKLSMPMSEERSVLRTTLIAQLLETAAYNRNRKNESAVIFEIGSVFHTEEEKLTRLPQEKHRFAALLTGNRVEPQWNRKASAVDFYDAKGILETVFDVLGIADKVSYAAAQPEHFHPGRTAAVQLETEHGTEVIGYVGQLHPTLQLESDLADTYVLEIELAPLYQLAGDEIVYKALPRYPAMQRDIAVVLDMGVPAGELTALAWQTAGELLESVRVFDVFTGEKLGAGKKSVALSLVYRHAERTLTDEEVTELHGKVVAGLEQSFKAELRK
>NZ_CP016808.1|WP_099519341.1|4226510_4227542_+|phenylalanine--tRNA-ligase-subunit-alpha
MKERLEALRVEALQELQQVDNPQVLNDLRVKYLGKKGALTEILRGMGGLSAEERPIIGQVGNDVRAAIEAVIEEKQAVFQQAETEARLRGETIDVTLPGKALPTGAVHPLNKVAQEIEDIFIGLGYTIAEGPEVETDYYNFEALNLPKNHPARDMQDSFYITDDILMRTQTSPVQVRTMQAMKGKPIKVICPGKVYRRDDDDATHSFQFNQIEGLVIAPNIRMSDLKGTLLQFAQQMFGSQTQIRLRPSFFPFTEPSAEVDVSCAQCGGHGCRMCKQTGWLEILGCGMVHPRVLEMGGYDPNEVSGFAFGMGVERIALLKYGIDDIRHFYTNDLRFLQQFARM
>NZ_CP016808.1|WP_172455548.1|4225291_4226095_+|copper-amine-oxidase-N-terminal-domain-containing-protein
MKKFALGLMAAALLALPALSAPVIAADRPIELANGKLMDNRMLIPLRDVAQNMGAAVEWSQKLQTIEIQKDDISMLLAINSKKVLVNQAETELDVPAQLINNTTYVPLRFVSQILGASVDWNSYGQVATITLEGKQLVVYVEPVKLLAAEKASAARLKQLSDKLNEAADVSAMKQIRTYFKPYFTDRLINVTIQNKGLEYNYSFKDPVTTGSYRTKTTGSFLQSLDIGHDAWETDFMMRESKIIKVNGIWKADSVSFTKGKIPISGA
>NZ_CP016808.1|WP_099519339.1|4224128_4225052_+|dihydrodipicolinate-synthase-family-protein
MQVKQAPKGVWPVMLTPFTKDNEVDYPALEQLINWYIDNGVHGLFAVCLSSEMLHLSLEERVAVARFVQEKTAGRVPVVASGHISESFQQQLEEIRQISATGVDAFVLVTNRLAAEDEDEEVWKRRAQTILETFPDVTFGLYECPIPYHRLLSPELVKWCADTGRFTFMKECSNNLEQIKAKIKAAEGTPLNIFVANNPHVLEVMQGGGGGYSGMLASFQPDLYAWLTDNWDKQPDKAEWLQNYLGASCLYEGRHYHIGTRYYLQLEGLDITLKSRSKKASDFKVTHEREIEQFRKFNQYVKQTLLE
>NZ_CP016808.1|WP_099519338.1|4223313_4223889_+|dihydrofolate-reductase
MRKLVLFLHASLDGFVEGPNGGMDIGWVSYDADLEKHAKEILSTADTVIWGRGTYQMMHSYWPSVPSDPSASQHERNHAEWIEKTAKIVFSTTLDKVEWNNSRLVKENVEEEINQLKQQPGKDMVILGSPRFAHHLMELDLIDEYKITVSPVLIGKGLPLFQGLKEKINLKLIENKTFDSGAIGLVYQTVR
>NZ_CP016808.1|WP_099521675.1|4222805_4223192_+|RidA-family-protein
MSRKQVFTGSPWEPLVGYCRAIRVGNRIEVAGTTAMKDGEVVGKGDPYEQTRFVLQTIENALAELGASMSDVVRTRMFVTDISKWEEIGKAHGEFFRTIQPAATMVEVKALIDPLLLVEIEAEAIIQP
>NZ_CP016808.1|WP_099519337.1|4221889_4222750_+|two-component-sensor-histidine-kinase
MSYRWLKWLILWIPTLTIGLWEYVRHAFLLPYISMDLGNVLAPVLVFLVTLTLLRGLFKRLEVMQDALQRERLSKSAFEQREKLARELHDGISQSLFLLSVKLDSLEHAHTPEGVRQTTEQIRGTVRHVYEDVRQSIANLKSSTAASPAEGPWRAAIHSLAEELREAGGYTAEVNWQLSEHALSDKEKVELMAIVREALMNIRKHTHEAHVSIACYPLEGGALGSFHCIVADTGRGADAEQLEAKGRYGIRMMRERAKQMGWTLRVKSERGQGTCVEIAAEPLSDS
>NZ_CP016808.1|WP_099519336.1|4220418_4221867_+|CopD-family-protein
MILKFISRSKQLVRHAPARITALYAVLALLLFGAVLLVGLMPADAHAARILEPKHISGAFPTLAASFNPHEQVGHDQMENMDHGHDSGLSVGTALFYTARIVYYTALLLAAGMMLWFSGIRTGSDEQLKRMQQWSLPMMRALLLASLMYVFASARSLMEGYGGGGPEWVRLFTETNTGQAWLALLILSLLGFVVIKANDTFKLIWALLLLAIESWSGHVAALQSNMNLGIVLDFIHLACAAVWSGGLMILLGLWFADRKEAGRFAERFTTAAWISMALLVITGAAITLLLLPSLSYLFYTSWGIWLIVKIVLVALVIATGALLRVRVRRGELPHGLMLKVDAGLMLAITLIVGVFTYMSPLPDNTPVRFHKMGETRHFTVNITPNEPGTNLFEVKIWLPEQLGEPSEVRLVLHSRNRQQLAPLEVPLAIFEDKSYESFPGFVRTSYHAEQMDIPFPGKWTAELQVVDKSGDKLEESIDFENY
>NZ_CP016808.1|WP_172455547.1|4220072_4220237_-|hypothetical-protein
MEFNSSYTIADLNHNEDALAQIKQLEQQLSDQTGASITLIAYNYEHDITAERTD
>NZ_CP016808.1|WP_099519335.1|4218772_4220095_+|VWA-domain-containing-protein
MQNTNKLILFRTMVIIIVLMLAAACSGSMNNGSDRSNSTKPGDTTGDNTTGDTVTKSAEDSGGDQAPSKGEATEPAPESERRESGDRRYTSQQAEVKAGQLTAGEWDDLAAWQRFGNLLNSKEGDDNARYWSFHAFNRLEVVVTSGGRAVSDAVVKLSDNQREQVWEARTNTDGKAYLFAGLFNKGQNDKQSHYKVEVQAGQYHKSIDQISLPEQGTLKVDLGGEAELANSVDIMFVVDTTGSMEDELRYLEAELKDVIGRVGEQHGQQLDIRLSANFYKDKFDDYTVKPFPFTTDVDQVVRKLAAEKADGGGDYPEAVDAALRDAIHGHDWSDQARARLLFLVLDAPPHYNTEVVNEIQELIQTAAAEGIRMIPVASSGIDVQTEYLLRFMAVATGGTYLFLTDDSGIGGGHLEPAAGEYEVKPLNDLLVEMINRYVQP
>NZ_CP016808.1|WP_056034370.1|4235276_4235957_-|SDR-family-oxidoreductase
MSLLNGRVAIVSGAGSGLGRAASLSFAKEGAEVVLLGRRLNKLQETFEAIKEATGREALVIPTDVTDEQQIKQAVILAVGKWGKIDILLNNAAVLESGHVIELTSENWHTQVATNLTGPFYLSRAVIPYMRAERYGRIINITSGLSWNGAGGYGAYSAAKAGLESLTRTLADEEHEYGILINLYNPGTLRTEMHATGKDPAVVTPDLLRLASLPRGGPTGSTVSYG
>NZ_CP016808.1|WP_099519344.1|4236468_4236840_-|cupredoxin-domain-containing-protein
MKKWIYLAAVMCFVAIIAACGTSGGASEAGGVIDTDANAAEVVIKAKSWEFEQTEYKIKQGEAVNLKLESTDGVHGLQVTKTDITIPNNKSKTISLKAGEYTIVCNVPCGTGHTKMQAKLIVE
>NZ_CP016808.1|WP_056034380.1|4237048_4237426_-|phage-holin-family-protein
MSFLGHVVRFIVAALVLMLVGLIVPQFSVGGFWSALMLAIVIAVLGWIIEAIFGKKVTPFGRGIVGFIASVVVIWIAQFIVSGVSVTWLGAILAALVIGIIDLFIPVSTPYEAGRSDHDRRSSDH
>NZ_CP016808.1|WP_099519345.1|4237627_4239997_+|endonuclease-MutS2
MDSKILTTLEFHKIIHKLTQHAATSLGKAEAEKLAPSSDLETVKLMLQATDEAYKADRLKGNPPFGGITNISSSLHRSRIGGTLNPVELMEIASTSRGARRVKRHLENLHEDDPIPLLHETSDQLSEHKELEDAIFDCIDDQGEVMDSASVQLASIRRELRGGESRIREKLEQMIRSSSVQKMLQDAIITLRSDRYVIPVKQEYRSHFGGIVHDQSGSGATLFIEPEATVVMNNKLRELRAAELREIEKILQMLTAKAADHVEDLLYNQELLGRLDFAFAKARLGHEMKATLPRMNDRGFLKIKRGRHPLIAADKIVPIDVELGNTYTAIIVTGPNTGGKTVSLKTVGLLSLMSMSGLFVPVEDGSQLCVFDAIYADIGDEQSIEQSLSTFSSHLVNIIRILKSMTAKSLVLLDELGAGTDPAEGSALAIAMLEHIHSMGSRIIATTHYSELKAYAYNRKGVINASMEFDIATLSPTYRLLVGVPGRSNAFAIAERLGLSKTIIDHARGEVSEEDQRVENMIASLEADRLNAESDRQTAQSLRLDMEKQRGRHEAELRKFEEQRDKMLEKAQEEAREAVAKARQEAEKIISDLRKLALEEGASVKEHKLIEARRKLDEAVPELHKKQNRPSNAGQQKAARKIEAGDEVMVYSLNQKGLIVEVHGTDATVQLGIMKMKVAVADMELIKPAAPLKQQPKQAASVKRSRDENVKMELDLRGSNLEEALMEVDQFLDESFLSGIGQVYIIHGHGTGVLRSGIQQYLRKHSHVKKYRLGNYGEGGAGVTVAELN
>NZ_CP016808.1|WP_099519346.1|4240068_4240491_+|DUF350-domain-containing-protein
MSNEVDVLLGNSYLAMLLYISIVVLSLLVFLWVFEVVTRYNCWKEIKNGNVAVAMATGGKIFGICNIFRFSIEANDSIYQSMIWGAFGFLILLGAYFLFEFLTPVFRIDDEIERDNRAVGLIAMIISVSLSYVIGGAIVS
>NZ_CP016808.1|WP_099519347.1|4240606_4241137_+|hypothetical-protein
MEEQVVCPWCLTEIVWDEEIGPEKNCPHCENELDGYRTLQFGVDNDRDEDEEEEEPEWEQEDGSGQQAGSDWDEADDGFRRTHRDWIGAQGKVQQIINEQEEAPECSSCREYMLEAGKQTIAAGSFEPTLHPALGQPLLQPPFELKLYVCPSCFHTATQLSGNDREEMLKALASED
>NZ_CP016808.1|WP_099521676.1|4241507_4242770_+|MFS-transporter
MKSSMQLGPFGRQAMLGRAPTGGVLDRQAILLLAVQALFGIALALSGTFVPIYLWKASSSYMLVGWFTMSQYLTCGITFWLAGKWVKEYNKMNSLRTGIVLSGAFYFTVLMLGKLAASYIIPLGILNGVALGLFWVAFDVIYFEITEPDNRDRFNGWSGLLGSGAGILAPWVSGLLITSMSGERGYQIIFTASLVILAISVVLSFWLKKRKQDGRRYSWTHGFQQLAIPGNPWRRMLPAVIAQGVREGVFLFLVGLTVYIATQNEAKLGSFTLITSSVALISFWLVGKRLSPRNRKRAMLVGTVMNALVILPLFYEVNFTNLLLFGIGTSIFMPLYIIPMTSRVFDLIGESQSSGGEREEYIVLREAGLTLGRVLGLSGYLVVLTQNHSPLAVVWLLFVVGSVPVIGWWMMRPLLEQETS
>NZ_CP016808.1|WP_099519348.1|4242798_4243716_+|cysteine-synthase-A
MPKIVSSIIDLVGETPVVKLNRLAEEGCGDVFVKLEYFNPSGSVKDRAAASLIQAGELSGHIKPGSTIIEPTSGNTGIGLAMGAAAKGYKLILIMPDNMSQERIKLLRAYGAEVVLTPAAERMPGAIAKAQELARSIPGSFIPNQFENKANPDAHRGTTAMEILQQMEGRLDAFVACSGTGGTITGTGEKLRAALPNLHIAVVEPMGSPVLSGGAPGPHKLVGTSPGFVPAILNVSVYDEIIQAADDDAIAMMKALARQEGLLLGPSSGAAVWAAFQVARRLGAGSRVLCIAPDTGERYLSMELF
>NZ_CP016808.1|WP_099519349.1|4243724_4244855_-|CotH-kinase-family-protein
MSTQTLPIREITIEPDHLQELQEDSWSHTFQPVQLEMNGKSREATFGYRGGHTRNYFKKSYEVRTTTGLTLHWNAEFDDPSMIRNALSFQFFNQIGVPSPRTRHIWLIINGAPQGVYLEIESVDPRFFRRRGIGCRAIIYAVNDSANFSLIDPITERRKESLFDGYELVSGLAASELRLIRFVSGINRKHKSRLQWSTWTSRRLDVDQYLLWLAGAVLTGNYDGFDQNYALYLHGKTGKYRMMPWDYEGTWGRNCYGKPCGSDLVRVEGYNTLTDKLLAIPAYKRKYRSILLRLLQTAFTEEQVERTVRAMYSKLTPAIREDYTRKSSFDTYLSEPDFILNYVKERRALIRKAIKSWKLTKKAADVEVAALKVKIH
>NZ_CP016808.1|WP_172455549.1|4245209_4245986_+|hypothetical-protein
MNYCSNFVGGEQDRNLGNMNQHHKSNKHKSNQHKSNQHKSSNENGTKSFLDGLVGQFVKINRGGPESLQGTLVAVKNDYLVLWTKEGIVYVSTSHVKSITDFPSNKSKGRTPHYIHASSFIGVIRALNQKFVQINWGGPEKMEGFIAEVGSTSLLLVVNREVVQIQLFHIKTIKLLGQNTSRGDRSGGNKNRTGGNNNGGDKNRTGGANNGGDKNRTGGTNSGGNKNRTGGSNSGGNKNRKNNNKSGNKNGNRSGKRN

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Crispr_ID: NZ_CP016808_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_10

5434361-5435257

Orphan

I-C:NA

Consensus_repeat	Method
GTTTCAATCCACGCTC-CCGCACGGGGAGCGAC	PILER-CR
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CRT

13 spacers

The CRISPR arrays of NZ_CP016808_10

>merge|NZ_CP016808|10|5434361-5435257|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAACATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGCGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACTCATCCTGCAGCCTGTTATACGCCTCTTTAATATCGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACCATAATGGTCCACTGAACGAGTCCAGCAATAGCCGGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGCGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACATGACGTACTACCTCCAATGCGTCTCTCTCAGACGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACAGTGCGTGGGTACACTCCTGCAGCAGCCGTTTGTGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACCGATCTTAATAAAAGCAAACAGATTGTCGATAGCGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACTTTACTTGTGTCAGTGTCAGCATCAACAGCACCCCGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACCGCATTGGCATCATAGAGCAGCACGCCAGAATCCGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACAGGACTTATCGGAACGCCCCAACAAGCCGACTTAGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACATTTAGCATCTTGCTTTCACCTTGTCCTCATGCAGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACTTGGATGATTCGGGATACCAACTTCATCGCTGGATGTCGCTCCCCGTGCTGGAGCGTGGATTGAAACATGATAGTGAGATAGTCAACGAAAATGGCTCCTATGTCGCTCCCCGTGCGGGAGCGTGGAATGAAAT

>NZ_CP016808|10|6|5434361-5435257|PILER-CR
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TCATCCTGCAGCCTGTTATACGCCTCTTTAATATC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CATAATGGTCCACTGAACGAGTCCAGCAATAGCCG
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATGACGTACTACCTCCAATGCGTCTCTCTCAGAC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	AGTGCGTGGGTACACTCCTGCAGCAGCCGTTTGT
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CGATCTTAATAAAAGCAAACAGATTGTCGATAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TTTACTTGTGTCAGTGTCAGCATCAACAGCACCCC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CGCATTGGCATCATAGAGCAGCACGCCAGAATCC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	AGGACTTATCGGAACGCCCCAACAAGCCGACTTA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATTTAGCATCTTGCTTTCACCTTGTCCTCATGCA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TTGGATGATTCGGGATACCAACTTCATCGCTGGAT
GTCGCTCCCCGTGCTGGAGCGTGGATTGAAAC	ATGATAGTGAGATAGTCAACGAAAATGGCTCCTAT
GTCGCTCCCCGTGCGGGAGCGTGGAATGAAAT

>NZ_CP016808|10|9|5434361-5435257|CRISPRCasFinder
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TCATCCTGCAGCCTGTTATACGCCTCTTTAATATC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CATAATGGTCCACTGAACGAGTCCAGCAATAGCCG
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATGACGTACTACCTCCAATGCGTCTCTCTCAGAC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	AGTGCGTGGGTACACTCCTGCAGCAGCCGTTTGT
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CGATCTTAATAAAAGCAAACAGATTGTCGATAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TTTACTTGTGTCAGTGTCAGCATCAACAGCACCCC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CGCATTGGCATCATAGAGCAGCACGCCAGAATCC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	AGGACTTATCGGAACGCCCCAACAAGCCGACTTA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATTTAGCATCTTGCTTTCACCTTGTCCTCATGCA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TTGGATGATTCGGGATACCAACTTCATCGCTGGAT
GTCGCTCCCCGTGCTGGAGCGTGGATTGAAAC	ATGATAGTGAGATAGTCAACGAAAATGGCTCCTAT
GTCGCTCCCCGTGCGGGAGCGTGGAATGAAAT

>NZ_CP016808|10|7|5434361-5435257|CRT
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TCATCCTGCAGCCTGTTATACGCCTCTTTAATATC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CATAATGGTCCACTGAACGAGTCCAGCAATAGCCG
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATCCTCCAGAATGTCAGCGAATGCACTGGGGAAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATGACGTACTACCTCCAATGCGTCTCTCTCAGAC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	AGTGCGTGGGTACACTCCTGCAGCAGCCGTTTGT
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CGATCTTAATAAAAGCAAACAGATTGTCGATAGC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TTTACTTGTGTCAGTGTCAGCATCAACAGCACCCC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	CGCATTGGCATCATAGAGCAGCACGCCAGAATCC
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	AGGACTTATCGGAACGCCCCAACAAGCCGACTTA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	ATTTAGCATCTTGCTTTCACCTTGTCCTCATGCA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	TTGGATGATTCGGGATACCAACTTCATCGCTGGAT
GTCGCTCCCCGTGCTGGAGCGTGGATTGAAAC	ATGATAGTGAGATAGTCAACGAAAATGGCTCCTAT
GTCGCTCCCCGTGCGGGAGCGTGGAATGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_056028072.1\|5448875_5449118_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|379947
NZ_CP016808.1\|WP_150131597.1\|5424555_5425368_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274875
NZ_CP016808.1\|WP_099520151.1\|5430771_5431329_+\|DUF309-domain-containing-protein	unknown	unknown	gnl\|CDD\|377120
NZ_CP016808.1\|WP_099520159.1\|5447084_5447876_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP016808.1\|WP_099521773.1\|5447889_5448879_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP016808.1\|WP_099520158.1\|5444937_5447088_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|223400
NZ_CP016808.1\|WP_150131600.1\|5429896_5430580_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099520155.1\|5435977_5436982_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP016808.1\|WP_056028086.1\|5437007_5437820_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP016808.1\|WP_099520156.1\|5439925_5441551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373045
NZ_CP016808.1\|WP_099520148.1\|5428877_5429219_-\|DUF3992-domain-containing-protein	unknown	unknown	gnl\|CDD\|372502
NZ_CP016808.1\|WP_099520146.1\|5423576_5424563_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP016808.1\|WP_056028098.1\|5431424_5432000_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239474
NZ_CP016808.1\|WP_099520153.1\|5432594_5434109_+\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NZ_CP016808.1\|WP_056028083.1\|5439119_5439683_+\|outer-spore-coat-protein-CotE	unknown	unknown	gnl\|CDD\|371168
NZ_CP016808.1\|WP_099520157.1\|5442099_5444901_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP016808.1\|WP_099520152.1\|5432079_5432400_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227255
NZ_CP016808.1\|WP_172455603.1\|5428094_5428823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237940
NZ_CP016808.1\|WP_099521772.1\|5437953_5438727_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP016808.1\|WP_099520149.1\|5429248_5429620_-\|DUF3992-domain-containing-protein	unknown	unknown	gnl\|CDD\|372502

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_056028072.1\|5448875_5449118_+\|RNA-chaperone-Hfq	gnl\|CDD\|379947	pfam17209, Hfq, Hfq protein.	2.72671e-40
NZ_CP016808.1\|WP_150131597.1\|5424555_5425368_+\|hypothetical-protein	gnl\|CDD\|274875	TIGR03951, Fe_III_red_FhuF, siderophore-iron reductase FhuF. Members of this protein family, including FhuF of E. coli, are siderophore ferric iron reductases that appear to play a role in iron removal from certain hydroxamate-type siderophores, including coprogen, ferrichrome, ferrioxamine B, and aerobactin. Genes occur in regularly in siderophore transport and/or biosynthesis clusters. The C-terminus includes four Cys residues in a C-C-10(X)-C-X-X-C motif that binds a 2Fe-2S cluster. Family TIGR03950 is similar, but especially in the C-terminal region, but likely acts on a different panel of siderophores. [Energy metabolism, Electron transport, Transport and binding proteins, Cations and iron carrying compounds].	0.000408287
NZ_CP016808.1\|WP_099520151.1\|5430771_5431329_+\|DUF309-domain-containing-protein	gnl\|CDD\|377120	pfam03745, DUF309, Domain of unknown function (DUF309). This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.	1.39047e-20
NZ_CP016808.1\|WP_099520159.1\|5447084_5447876_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	1.61823e-13
NZ_CP016808.1\|WP_099521773.1\|5447889_5448879_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	8.64251e-157
NZ_CP016808.1\|WP_099520158.1\|5444937_5447088_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|223400	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair].	0
NZ_CP016808.1\|WP_056028083.1\|5439119_5439683_+\|outer-spore-coat-protein-CotE	gnl\|CDD\|371168	pfam10628, CotE, Outer spore coat protein E (CotE). CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore and spore resistance to lysozyme. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance.	1.21513e-82
NZ_CP016808.1\|WP_099520155.1\|5435977_5436982_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.29795e-44
NZ_CP016808.1\|WP_056028086.1\|5437007_5437820_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.93999e-111
NZ_CP016808.1\|WP_099520156.1\|5439925_5441551_+\|hypothetical-protein	gnl\|CDD\|373045	pfam14395, COOH-NH2_lig, Phage phiEco32-like COOH.NH2 ligase-type 2. A family of COOH-NH2 ligases/GCS superfamily found in the neighborhood of YheC/D-like ATP-grasp and the CotE family of proteins in the firmicutes. Contextual analysis suggests that it might be involved in cell wall modification and spore coat biosynthesis.	3.58214e-118
NZ_CP016808.1\|WP_099520148.1\|5428877_5429219_-\|DUF3992-domain-containing-protein	gnl\|CDD\|372502	pfam13157, DUF3992, Protein of unknown function (DUF3992). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 98 and 122 amino acids in length. There is a single completely conserved residue T that may be functionally important.	4.74327e-09
NZ_CP016808.1\|WP_099520146.1\|5423576_5424563_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.93471e-42
NZ_CP016808.1\|WP_056028098.1\|5431424_5432000_-\|carbonic-anhydrase	gnl\|CDD\|239474	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.37901e-58
NZ_CP016808.1\|WP_099520153.1\|5432594_5434109_+\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NZ_CP016808.1\|WP_099520157.1\|5442099_5444901_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP016808.1\|WP_099520152.1\|5432079_5432400_-\|hypothetical-protein	gnl\|CDD\|227255	COG4918, COG4918, Uncharacterized protein conserved in bacteria [Function unknown].	1.97505e-19
NZ_CP016808.1\|WP_172455603.1\|5428094_5428823_+\|hypothetical-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	0.000931594
NZ_CP016808.1\|WP_099521772.1\|5437953_5438727_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.62884e-60
NZ_CP016808.1\|WP_099520149.1\|5429248_5429620_-\|DUF3992-domain-containing-protein	gnl\|CDD\|372502	pfam13157, DUF3992, Protein of unknown function (DUF3992). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 98 and 122 amino acids in length. There is a single completely conserved residue T that may be functionally important.	1.30384e-18

>NZ_CP016808.1|WP_099520153.1|5432594_5434109_+|carboxypeptidase-M32
MTVHNSKALAPFLETVKKLKAYGEALGVLYWDLRTGAPRKGMDMRSEVIGSLSGDMFKLSTSPELGEWLSELEQPETFGKLSEIERKLVTDTREEYDRSVKIPPKLYEEHVVICSQAESKWEEAKAANDYEGFQPYLEKVIDYTQQFIDLWGPKETRYDTLLDQYEPGMTVKELDKVFGGLREQLVPLAAAIAASKHQPDTSFLRQNYDKQAQKAFSLRILKQMGYDFEAGRLDESTHPFATGLNTGDVRITTRYLEDDVTSALFGTIHEGGHALYEQNIMAELDGTTLSTGTSMGIHESQSRFWENVIGRSKPFWQHNFAALQQQFPGQLDVTLDQFYRGNNVVQPSLIRIEADELTYNLHIIIRYEIEKMIFNEGAKAADLPAIWNEKYKEYLGIEPPTNAEGVLQDVHWSGGAFGYFPSYSLGNMYAAQFADTLERELPNFWELVSAGNLLPIKEWLSERIYKYGKLRTPSELIQNVTGKPLDPQYLVKYLEKKYSEIYKL
>NZ_CP016808.1|WP_099520152.1|5432079_5432400_-|hypothetical-protein
MFITFSPSAVEQLSPYLEDGVHQLKLLHDTEGCGCVVSGVPALQLVKEPSSDDRLTQGQPFSFLYEPRHEVFFEPQLRIGYDTDRGTFNLKSDGQIYSLNLRFLTP
>NZ_CP016808.1|WP_056028098.1|5431424_5432000_-|carbonic-anhydrase
MNNVDQIMNDNTAFVERKDYEQYITSRFPDRKMVIVTCMDTRLTEMLPKAMNLRNGDAKIIKNAGGIVTQPFGNIMRSVLIAIYELQADEVFVIGHHGCGMTGLNPEVIVQHMTDRGVPEQTVETLRHSGLNFMRWLTGFDNVKESVEKSVGIIRNHPLLPPNVPVHGMTIEPETGQLDLIVNGYDKLKQP
>NZ_CP016808.1|WP_099520151.1|5430771_5431329_+|DUF309-domain-containing-protein
MKYPGHYVSYLVEFHATRDFFECHELLEEYWKEHPEDERALIWVGLIQLAVGQYHERRGNLAGAAKMYEQALGKLTAVALDSLGLNGAKAVVELEAVLARAKQLEEAIAPAYQDMNLEIIDAELQVLCEQECTERGIAQKQWGLPSDMADEALIHRHTLRDRSDVIAARAEAIAARTKKPSTHNR
>NZ_CP016808.1|WP_150131600.1|5429896_5430580_-|hypothetical-protein
MKKSKWITLTAACAGFLIISGSVFASSSGARIFINHTEFSASQFNLHMDKGTAMVSLRSIVEQFHGKSTYKNNNIYVTMPESADLSMQVNSLENALIAESPEEAVQTWIHGVQKRSGAMQYAVLSPALRQTTKQEFSDHFWVTGGSSPHMGKVEKLNSKEVTANKVQITFAYPLVVMEETIGTGTATLTVEKIKRESSDYWAISKINLEDPGDTGTMIGANASKTSK
>NZ_CP016808.1|WP_099520149.1|5429248_5429620_-|DUF3992-domain-containing-protein
MACSNSASALTCCSDKNFVQDKVCTPWSGTVVAADVLVVTFTNNINQNIVGTGYLQYDVGPDDITFDFLDSTGTPINPTPFTLAPGTSMAFTYRRFSAIRITLPAASPGTYQGEFCITTRYPV
>NZ_CP016808.1|WP_099520148.1|5428877_5429219_-|DUF3992-domain-containing-protein
MCDNTPSLSCCTDKIVVQDKVCINWQLAAAGTQVIYSDNISQIISGTGYVKYETGTGTLTVNFFAAGVVAPIETIVIPVGGSASFTVARFQSISITSTAAVQGEFCITVRYNL
>NZ_CP016808.1|WP_172455603.1|5428094_5428823_+|hypothetical-protein
MLKKGRRSRREVLPSFIIVLKMNSSCIQKIKRKHKRKFNCKVKKKRCRNRRSKRRLRPVFLNRPKRCRRRLSFPIPFPTAPCCDPVNPVIPVYPVDPVNPVNPVNPVNPVNPVNPIVPIIPVKPCKNANEIVIEKECCGNMLVQGKQPEFLIWEADVDSQTTIAQISVFSNATSTDALNIDINGEEQKRIVVLPGNTSNFIGQGVKSVKISVQGNDFTYVEGKYVISTTLQLPANTSTMNGQ
>NZ_CP016808.1|WP_150131597.1|5424555_5425368_+|hypothetical-protein
MSKNMEVCSQREQAANFLQHHFRISIGELVEEAYPFSAAELLDPAKCSHIMKLQSRQLGDPGDIVVGTLFAKRYAVFFMGLLSAVSLFDCQLEASPAGVRFRIMNLAAMEYQATLAVCPWLSVLELEQRKVEVEYWTDRLLQHTEKILTAVSLHTGAKVSVMWSLISHYVQKCYAQLEHNTSIWQTEQRLQLIKADRHVLFQKRQGNPLDVSFKEFQHRQYGGSLVLLRRYCCLAYRLRREGQQVHGYCSTCPRISAEERLDLLNDGANA
>NZ_CP016808.1|WP_099520146.1|5423576_5424563_+|ABC-transporter-substrate-binding-protein
MNKHRMMYLVLWAMLLLAVTACGKAESPASEPEQTNQSANQPVEKATRTVTHLKGEAIVPAKIDKIVVLSAAYIDHLLTIGEKPVGVNVETRYGGDYLPYLASELEGVQLVGSADSPNLEAIVQLEPDVILIESRTAENTYDQLAKIAPTLVLGTEWLEYGDDTTYWTADLLKVAELYDKVDLAKEKIAELDAKAKQASEKIKAIDNYNLAYLRVREKNLQIYAEKGHPTNTLLYHDLGFTKTSLTPEEQRGELSLEVISGLDADYIVLEVDPNGQDNLKSINDSSFWNKVSAVQNNKVYETDSFWLFKGWGVIGRGQIIDEVLKMIE
>NZ_CP016808.1|WP_099520155.1|5435977_5436982_+|ABC-transporter-substrate-binding-protein
MRRRWTTLLLVVMLAATAALAGCGGKSEKTTLKVGEVTRSLFYAPQYVALEKGFFEEEGLNIELTTTAGGDKTMTALLSGVIDVALVGSETSIYVYQQGADDPVINFAQLTQTDGTFLVARQPEPTFDWQSLKGKIFLGQRKGGMPQMAGEFTLKKFGIDPQKDLELIQNVDFANISAAYASGTGDFVQLFEPTASIFEKEGRGKVVASFGAESGHLPYTVYMAKQSFTNKNKSALQSFTNAIHRAQLWVAENSAETIADVVLPYFENVDRGILISSIDRYKQQGSFATDPIIDQEEWNNLLDVMTSAGELKARTEHDAIVNTAFAEAAIEAVK
>NZ_CP016808.1|WP_056028086.1|5437007_5437820_+|ABC-transporter-ATP-binding-protein
MANSDPALTLRQVTHVYVNDKGASLAVEDMNLTVQRGEFVSLVGPSGCGKTTVLSMLAGLFLPTRGEVLLNNRQVKQPSTLVGYMLQQDYLFPWRTILDNAALGLELTGNKTQAALETVAELLAELGLPGAGARYPHELSGGMRQRVALARTLATEPEVLLLDEPFSALDLHIKLQLEDLVQVTLRKLGKTALLVTHDLSEAVAMSDRVIVLAANPGRIRYELTIPDSIRQASPMKARQLPEFQPLFDQLWAELDAAEKTLWEGSESNEG
>NZ_CP016808.1|WP_099521772.1|5437953_5438727_+|ABC-transporter-permease
MRRAKRTTALVGVTQFIILVLFIGLWEAAGRNRWVDPLLFSYPTKMFHQLWGTMSDGSIWPHIGVTVSETIVGFALGTLLGTLLAALLWWFPFVSRVADPYLVVLNSMPKVALGPIFIVCLGPGFLSIVAVTLSVTVIITTLNIYNQFREVDAGYIKVVRLFGAGRSQLFRSVILPASFPVIISTLKVNVGLAWIGVIVGEFLVAKLGLGYLIIYGFQVFNFTLVLSSLLVIAAVATVMYKAVSALERRLMAGWREQ
>NZ_CP016808.1|WP_056028083.1|5439119_5439683_+|outer-spore-coat-protein-CotE
MANADKQLQYREIITKAVCGKGRKFSTVTHTVTPPQHPTSILGAWIINHQYEAVRSGDGIEVIGTYDINIWYSYSKNSQTEVAKESVHYVENVPLSFVDPKHRATTVEVSADALQEPNCIEANVSSSGSGVVIRVEREFSVELVAETKVTVACIPGGLDGLDAKEYEFGLGDDDYEDLDPDLLDDEL
>NZ_CP016808.1|WP_099520156.1|5439925_5441551_+|hypothetical-protein
MAAVWLWNSSTGRLELAGEATAAAAESAPTASLLAEVKAGDAVIVSSCVAEKKKGSESRQGESGQQGESGQDQSRREQQGVKEKQGLREQKGITEKQHMSEKHEGYGKQLLPVLPSGIWLLNEGESGFAAMSAAEQQQRLRRAGLLRRQELGDSDRLYKVAIAHLEPIELQRLDRRGRPAAGQPLLRAEPGGHAAAPWPRDAALRRVIRAAVAALYALGLDMGEAEVVLGEGGRAAVRAAGVLRDAKLRAVGLARMAAWYEAAAAPVPGTAPKLLLGADPEFALVRPDGRIVPASRFFGDGAQGAAGSDAMLIGRRIVYPVAELRPEPAESPAALAAHLRRLLLRAAERISDPSLCWVAGAMPVPGLPLGGHIHLSGTPLSSRLLRLLDSYAAFPLALVEDPAGRGRRPRYGALGEYRQQPHGGFEYRTLPSWLISPAAAKAALALALLCARETRALTDIPALDERYVEAFYSGDHAELAGCLDPLASAMAATPSYAALAADIEPLLDAARRGITWDERADIRHKWRIPMLAPASNKRPNK
>NZ_CP016808.1|WP_099520157.1|5442099_5444901_+|DNA-mismatch-repair-protein-MutS
MASYTPMIMQYLAIKEEAKDAFLFFRLGDFYEMFFEDAIAASRELEITLTGREGGGTEKIPMCGVPYHSAQNYIARLVEKGYKVAICEQVEDPAAAKGVVRREIVQVITPGTVMESKALADKTNNFISAIALLNGKVSISSCDLSTGELYVTSFPLQMEALIDEINVYQPAEIVGDEDLLDKLQASDAWNRPILLTKREPVPEQKLLDQFGKQELVQLNEACMRAVSLLIGYLDDTQKRSLGHVRAIRSYEPGQYMILDHYTRRNLELTETVRDRSKKGSLLWLLDRSQTSMGARLMRRWIDKPLLSRTAIEARLDAVDTLYRNLILRDDIRSELNDIYDLERLVGRVAFGSANGRDMNALKTSIQRVPQLVELCKASGSQRLEQLVDGLDDCADLADMIATVVVDEPPVSIREGGIIRAGYDDYLDQLKEASTNGKKWLAELERAEREATGIRSLKIGYNKIFGYYLEVSKANLAMLPEGRYERKQTLSNAERFVTPELKEKERLILEAEEKMVDIEYERFLELREHLAGQLHRLQRLAEAIAELDVYQAFATVSAERRFTRPSITDSFDMVIEEGRHPVVEAVMENGAAFIANATQLHKEHNSMLLITGPNMAGKSTYMRQVALIGIMAQIGCFVPAKSAQIPLTDRIFTRIGAADDLIGGQSTFMVEMKDIQIMTEKATENSLVIIDELGRGTSTGEGMAIAQAVIEYVHHQIRCKALVSTHFHELSHLEDSLPQLTNACMAVQESGDHVTFLRKMIPGAAGTSYGIYCAKLAGLPESIISRSYELLEVSDALVEKNASIKMGTAAVVETDRRTAEEKTASNKNKPEHSYAALQSGDTLSNASGHADSSIPSASDPSASQASSAGVRETAAAIQLSIWDEPAAAQADSSRRKGSPKSEQLADQLRKLDLFNMTPMQAMQWLNDMKRKMND
>NZ_CP016808.1|WP_099520158.1|5444937_5447088_+|DNA-mismatch-repair-endonuclease-MutL
MGKILVLDEQLANQIAAGEVVERPASVIKELVENAVDAGSSTIDITVEEGGLNLIRVTDNGSGIPAEEIETAFQRHATSKIATSSDLFRIASLGFRGEALPSIAAVSRLECLSSTGQTGLGHKLSIEGGTITASIPAAMPQGTDMTVRDLFYNTPARLKYMKAVQTELGHISDYIYRIALAHPGIAFTLKHNGNTLLRTLGTGDRLQVIAAIYGSNTAKAMMAIQGESPDYELLGYISKPELTRSNRNGITVIVNGRYIRSHAVNQAMLQAYHTLLPINRFPLAIIEIGMHPSLLDVNVHPSKMEVRFSKEAELRTLVETAIQAALGKERHIPGPDSIHNQKRSGPVFVQGAMSFHRPEPKTPPVPEKDNIGERSIAQAPYSPFGQGASREFVPKDAAERLYKPAQTGNSLAREASAAWGNFASEAVQSLGRAAANSSPSQSEDAPLPAEPAWIRQDAASSQTAANGSEPGNGLESAGAATADLSSEVAATVHTAALPDVNFGQGGQVPVAPEQPSAANEAGFPELHWIGQLHGTYIVAQSEEGLYLIDQHAAHERINYEYYYAKFGMPEAASQQLLVPLTLEFTPGEAEQLRGLLPLFNEAGVELEPFGSQTFLVRAYPQWLPDGEEKDIIEEMADLLLAERKSINIAKLREKAAIMCSCKASIKANDRLTREEGAALLSRLGACHQPYTCPHGRPIVVHMSTYQLEKMFKRVMS
>NZ_CP016808.1|WP_099520159.1|5447084_5447876_+|class-I-SAM-dependent-methyltransferase
MIVTTADRPSEATVAKARRIAGELSVPYRARGRMTLRQIGAEMAEIRLFVVTDREVRYYEGQTDTPLFFHPSMAFVRVKRLRRGETDPLITLSGCEEGDTIVDCTAGLASDSLVFAYASGTSGQVTAIESERVLCALVREGLTVYESGLADVDAAMRRIRMISMNHLDYLRQLPDQSVDIVYFDPMFRQPIHESSSIQPLRQLVNDSALSAEAVAEALRVARKTIVLKEHRHSEEFARLGFERRHLHSSKIAYGVIEVARTRE
>NZ_CP016808.1|WP_099521773.1|5447889_5448879_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MGKKQPLLVLIGPTAVGKTHLSLELAKAWQAEIISGDSMQVYRGMDIGTAKLPLEEREGIAHHLIDIRDPDDPYSVADFQAGCGSSIEEIAARGKLPFIVGGTGLYVEAVCYGFEFSESGSDEAFRQEQEQFALAHGAEALHAKLALIDPKSAERLHPNDQRRVIRALEVFHLTGIKQSEQLEGQKKESPYELCIIGLTMDRAELYRRIELRIDQMLEQGLVEEVKALLSRGVPPHAVAMQGLGYKEIASFLRGECTLEAAVTLLKRDTRRFAKRQLSWFRHMKDIEWIDMGENFHNNLHRIHGIIAGKFQVHLEYTSNQSFVDGGNVQ
>NZ_CP016808.1|WP_056028072.1|5448875_5449118_+|RNA-chaperone-Hfq
MNKSINIQDTFLNQLRKDNIPVTVFLMNGFQIRGVIKAFDNFTIIIDSEGRQQMVYKHAISTFTPQRNVSLMQDNSSSDS

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Crispr_ID: NZ_CP016808_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_11

6127206-6127709

Orphan

Consensus_repeat	Method
GTTTCAATCCACGCACTCCACACGGAGTGCGAC	PILER-CR
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCACTCCGTNTGGAGTGCGTGGATTGAAAC	CRT

7 spacers

The CRISPR arrays of NZ_CP016808_11

>merge|NZ_CP016808|11|6127206-6127709|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAACCTTTGACATTTAGTGACAGTCAGATTAAGCGCGGTTGTCGCACTCCGTGTGGAGTGCGTGGATTGAAACCTTCGAAGCATGGTATGAAAAGTTGTTCTCAATTGTCGCACTCCGTGTGGAGTGCGTGGATTGAAACATCTCTCCCCTTAGGTTTATATCCGCGGCTGCCGGTCGCACTCCGTGTGGAGTGCGTGGATTGAAACATGCTCGGACCAGATTAAACTTGTGATGTGCATGGTCGCACTCCGTATGGAGTGCGTGGATTGAAACCGAATATTTTTTCTGCCATCATAACCATCTCCTTGTCGCACTCCGTATGGAGTGCGTGGATTGAAACTTCCAAGTCAGCAAGCGTGCCGTCGAGCCCCAATGTCGCACTCCGTATGGAGTGCGTGGATTGAAACAATCCTAGGCTGAAGAACTTACGGTCAACCGTTGGTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC

>NZ_CP016808|11|7|6127206-6127709|PILER-CR
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	CTTTGACATTTAGTGACAGTCAGATTAAGCGCGGTT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	CTTCGAAGCATGGTATGAAAAGTTGTTCTCAATT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	ATCTCTCCCCTTAGGTTTATATCCGCGGCTGCCG
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	ATGCTCGGACCAGATTAAACTTGTGATGTGCATG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CGAATATTTTTTCTGCCATCATAACCATCTCCTT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TTCCAAGTCAGCAAGCGTGCCGTCGAGCCCCAAT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	AATCCTAGGCTGAAGAACTTACGGTCAACCGTTG
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC

>NZ_CP016808|11|10|6127206-6127709|CRISPRCasFinder
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	CTTTGACATTTAGTGACAGTCAGATTAAGCGCGGTT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	CTTCGAAGCATGGTATGAAAAGTTGTTCTCAATT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	ATCTCTCCCCTTAGGTTTATATCCGCGGCTGCCG
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	ATGCTCGGACCAGATTAAACTTGTGATGTGCATG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CGAATATTTTTTCTGCCATCATAACCATCTCCTT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TTCCAAGTCAGCAAGCGTGCCGTCGAGCCCCAAT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	AATCCTAGGCTGAAGAACTTACGGTCAACCGTTG
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC

>NZ_CP016808|11|8|6127206-6127709|CRT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	CTTTGACATTTAGTGACAGTCAGATTAAGCGCGGTT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	CTTCGAAGCATGGTATGAAAAGTTGTTCTCAATT
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	ATCTCTCCCCTTAGGTTTATATCCGCGGCTGCCG
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC	ATGCTCGGACCAGATTAAACTTGTGATGTGCATG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	CGAATATTTTTTCTGCCATCATAACCATCTCCTT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	TTCCAAGTCAGCAAGCGTGCCGTCGAGCCCCAAT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC	AATCCTAGGCTGAAGAACTTACGGTCAACCGTTG
GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099520618.1\|6127881_6128358_+\|YfbM-family-protein	unknown	unknown	gnl\|CDD\|378105
NZ_CP016808.1\|WP_099520619.1\|6128890_6131911_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238742
NZ_CP016808.1\|WP_099521824.1\|6123321_6124287_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP016808.1\|WP_099520621.1\|6133939_6134980_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP016808.1\|WP_099520620.1\|6131894_6133880_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|379234
NZ_CP016808.1\|WP_046233130.1\|6128462_6128771_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP016808.1\|WP_099520612.1\|6118811_6119792_-\|cobalamin-biosynthesis-protein-CobD	unknown	unknown	gnl\|CDD\|234919
NZ_CP016808.1\|WP_099520622.1\|6134976_6135966_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|285027
NZ_CP016808.1\|WP_099520624.1\|6139671_6142053_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099520616.1\|6122283_6123318_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP016808.1\|WP_099520617.1\|6124492_6126763_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP016808.1\|WP_172455740.1\|6121474_6122275_-\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP016808.1\|WP_172455644.1\|6135982_6137737_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP016808.1\|WP_099521825.1\|6138665_6139598_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP016808.1\|WP_099520613.1\|6119788_6120394_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|376754
NZ_CP016808.1\|WP_099520610.1\|6116889_6118002_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|273466
NZ_CP016808.1\|WP_099520611.1\|6118020_6118830_-\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NZ_CP016808.1\|WP_099520614.1\|6120405_6121470_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
NZ_CP016808.1\|WP_150131610.1\|6115307_6116897_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NZ_CP016808.1\|WP_099520623.1\|6137775_6138669_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224196

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099520618.1\|6127881_6128358_+\|YfbM-family-protein	gnl\|CDD\|378105	pfam08974, DUF1877, Domain of unknown function (DUF1877). This domain is found in a set of hypothetical bacterial proteins.	2.21206e-35
NZ_CP016808.1\|WP_099520619.1\|6128890_6131911_-\|VWA-domain-containing-protein	gnl\|CDD\|238742	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.	4.56828e-28
NZ_CP016808.1\|WP_099521824.1\|6123321_6124287_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	5.29142e-62
NZ_CP016808.1\|WP_099520621.1\|6133939_6134980_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.87374e-21
NZ_CP016808.1\|WP_099520620.1\|6131894_6133880_-\|VWA-domain-containing-protein	gnl\|CDD\|379234	pfam13519, VWA_2, von Willebrand factor type A domain.	6.86776e-12
NZ_CP016808.1\|WP_046233130.1\|6128462_6128771_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.06311e-29
NZ_CP016808.1\|WP_099520612.1\|6118811_6119792_-\|cobalamin-biosynthesis-protein-CobD	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	3.33539e-128
NZ_CP016808.1\|WP_099520622.1\|6134976_6135966_-\|AAA-family-ATPase	gnl\|CDD\|285027	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	1.54863e-83
NZ_CP016808.1\|WP_099520616.1\|6122283_6123318_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.28659e-87
NZ_CP016808.1\|WP_099520617.1\|6124492_6126763_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP016808.1\|WP_172455740.1\|6121474_6122275_-\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.3377e-108
NZ_CP016808.1\|WP_172455644.1\|6135982_6137737_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.4593e-09
NZ_CP016808.1\|WP_099521825.1\|6138665_6139598_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.10695e-98
NZ_CP016808.1\|WP_099520613.1\|6119788_6120394_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|376754	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.	7.79342e-83
NZ_CP016808.1\|WP_099520610.1\|6116889_6118002_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|273466	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see pfamAM:pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.31544e-94
NZ_CP016808.1\|WP_099520611.1\|6118020_6118830_-\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	4.59891e-52
NZ_CP016808.1\|WP_099520614.1\|6120405_6121470_-\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	5.13197e-177
NZ_CP016808.1\|WP_150131610.1\|6115307_6116897_-\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_CP016808.1\|WP_099520623.1\|6137775_6138669_-\|ABC-transporter-permease	gnl\|CDD\|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	5.43276e-09

>NZ_CP016808.1|WP_099520617.1|6124492_6126763_-|copper-translocating-P-type-ATPase
MEQRHNESENSVTMQYAVGGMSCTACAARIEKAVGKMEGVQSVAVSYPARSAWVQFVPESLRSEEIMAKIGHIGFQASAAEHSKKQWKQERRVLGLRLMISLLLTLPLLAGMTQHLPLLSGLPIPAWLLHPWLQLALATIVQFVIGLPFYIGAYHALRSRAANMDVLVAAGTSAAYLYSHYIVFSSLPTGKALGAGHTLPLYFETSAVVISAVLLGKYLEMTAASRAQDEAGGYSQLEVQTATVERAGQWVNVQTAFVREGEIVRIAPGETVPVDGVLTSGETDMNESLLTGESLPVVKRAGDRIWAGTTNVGAVQRIRTTAAGHATLLSRISELLRQAQRSKSAIQQQVDRVAAWFVPAMLALSVFTFVLWLVLLDPGNWHQAFRCGVAVMLAACPCALGLAAPISLVIASGRLAKQGIVLKQAGALERLARLNTLLLDKTGTLTEGSPQVSAVWAAPNQTRSAVLRLAAAAEAGSTHPLGQAIGREAGRVGLTPPGASETVYFPGKGVQAVVERRRITVGNATFAKAEQWKANAEVAAALAAFCTEREKRGETLLYVASNGLLIGAISLADRVKPHSFAAVQQLQRYGLQVMLATGDHQIPAHTAARQAGITQVFAGLLPEQKLELVEQLKRSGKRVGMAGDGWNDAPALAAADVGIAMGNGTEAALAAGHLTLLQPRMTAIVDALGISRLTVRNIKQNLLLAFLYNSSIVPFAAFGLLEPWMAGAAMALSSVSVVGNAMRLSYILRRHKQLAA
>NZ_CP016808.1|WP_099521824.1|6123321_6124287_-|ABC-transporter-substrate-binding-protein
MNHMLKTSLAIWLIATLTLLAACGGAVNNNKESAAPTVAPSASPSAETGAAYPLTVTDGMDTKLTFEQAPEKIVTLVPSETEVVFAVGAGKQVVGVDQYSNYPEEANDIEKIGDMTTNIEAVVKLNPDLVLASSSMNGDAIAKLRELNIPVFASDPKTYGETIAHIESVGQILNRVKDAETVAGHMRDVMNQVMNAVKDAPAKKVYLEFSPGYTAGSGTFLDELLTMAGGTNVAGSKEGWYEVSAEEIVKQNPEIIIYPDMKVKPNPIVAAMDSRAGWNVIDAVKNKQVIAVAEDPLVRVGPRLADGLLDLAKAVHPDLVK
>NZ_CP016808.1|WP_099520616.1|6122283_6123318_-|iron-ABC-transporter-permease
MRHQWLGYGGAAVLLLAVSIIASLSIGSAGISFTDVWGILLHQLPWLRDQPVSWSEGEIAIVTQVRLSRVLLAVLVGACLALAGSGFQGVLRNPLADPYTLGVASGSSVGAAALILFGYQAAVGIWTIPIVAFITGITTLLVVFWLARSSAGLQLETLILSGVIIQAFLGAFVSFMVSLSNSVVNQILFWLMGSLAMKSWANVYMLIPFLIIGVIVLIAYAQHLNVFLLGEGQAAHLGIRVERTKLVVLACSTLLTAAAVSVAGVIGFVGLVVPHVIRLIVGPDYRLLIPLSAFGGGIFVLWADTLARMALSPKEIPLGVVTALIGAPFFAYLLHRRKRLEGGG
>NZ_CP016808.1|WP_172455740.1|6121474_6122275_-|heme-ABC-transporter-ATP-binding-protein
MLEARQLGTTIRGRNVLNDLTFSFEKGYTYGIIGPNGVGKSTLLRLLSGVLPPSQGDIFLAGRSIAAYSRKEAARKLAVLQQGVLPPVGFTVREVIEMGRFPYQNWFGNEPGDSSPIINEAIAAMGLEKLEQRTMAELSGGERQRVALAKVIVQQAEVILLDEPTTYLDIGYQIQLLDTVKSWQREQGITVVTVLHDLNLAALYCDEVLVLHKGSIAALGKPQHIYTTELIRDVYGAEASIMNHPLTGVPQILLAPNVRINNGELE
>NZ_CP016808.1|WP_099520614.1|6120405_6121470_-|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MKEEFCKLLANAIGRIPAFNEQEAEAARRHSDQLTKPPGSLGKLEDVACQLAGISGERWPDMERKAVIIMAGDHGVCEEGVSAFPQAVTPQMVLNFLNGGAAVNVLARQAGADVYCVDIGVNAELAHPKLLSRKIMYGTANMAKGAAMTKEQSIRAILTGVEVVDELYEKGYRVFAIGEMGIGNTTASAAITTVLTGLPPEETVGRGTGINDEAWKNKVEVVKRAIAVNAPDELDPFDVLMKLGGVEIAGLVGVIIGAAANSCPVVIDGYISSVAALVASRISDKTKPSMIASHLSYEQGHAKLLKAVGLSPMIHMDMRLGEGTGAVLCFHFIDAAIKLMQEMATFESAGVSKA
>NZ_CP016808.1|WP_099520613.1|6119788_6120394_-|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MAMLVTGGTRSGKSLFAEQLAMRLGNKGIYIATSRIWDEEMAERVNKHQQSRGAGVFEWNTVEEPLDLAELLAQQAQAAAAMASAGEQPPVVLVDCLTLWLTNALMAAEEQAGQPGKEADEQLHRQTETLIEAIAAYPYPLVLVTNEVGAGIVPAYPMGRKFRDEAGRLNQRVAAVCDKVFLVTAGIPIELKAAAFRWEQL
>NZ_CP016808.1|WP_099520612.1|6118811_6119792_-|cobalamin-biosynthesis-protein-CobD
MIFYSLPDMLWLIAVAIVVDWIIGDPKWPTHPVIWIGRLIAWLEQRLRSSDKQESSKRLKLKGVLLMLITLAVSYGVMWGIVAAASLIHSWLGYAVTIWFISTTIAVKGLKQAAMLVYAPLAAGNLEEARKYVGYIVGRDTDKLGESEAARAAVETVAENTVDALVSPIFFALIGGAPLAMLYRATNTLDSMVGYRNDKYIDFGWCSARTDDVLNYIPARLTGALLAFSAWLLPGMSAGRSVAAIRKFAHRHPSPNSGIPESAVAGALGIELGGLNYYFGEPSERARMGEPLRPLSARDIIFTTRLLYLVSLLLVVGVLALWLFVH
>NZ_CP016808.1|WP_099520611.1|6118020_6118830_-|adenosylcobinamide-GDP-ribazoletransferase
MAVRSLKLHAQALVAAIQFLTRIPVPLTVPFEPQVLSRSTAYFSIAGSIIGGMITLGFAAVQSWLPAGPGAVLLLALWLSLSGALHMDGWMDTADGVLSHRSRERMLEIMKDSRVGAMGVLAAVLLVLFKFTVLYELLYNTNSIYALPLLVTIPAWSRWWMAAAIVIWPSAREGEGIGALFQAASLRHVWSGFVLTFLLACGIGLAFGLPLSTSAFTAAGAAAVTMATGTFMSFWLVRKLGGLTGDTYGAMNEAIEAILLLALLLLTTH
>NZ_CP016808.1|WP_099520610.1|6116889_6118002_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MLERYGHGGDLRTAEENFGRPADQFVDFSSNMNPLGPPPLVHRVLLSYAQQIGKYPDPAVRGLRAKLAKLHGIDEQCILIGNGAAELIDLTVRAVNPIITSLAFPCFSEYGDAVHKISSGIAPIMLNTENGFELTEEAIQSMTTEMEEPFYMLGSPNNPTGRLVQPAIIKKLLAGGATVVVDEAFMDFVPEEADYSLVKEAAGNDRLYVIRSMTKFYAIPGIRLGYVVSTPERIAELRLLQVPWSVNSLAQLIGEGVLEDAEYAAETLKWLNEERPWLTSQLEGLGFSVTPSETNYVLVRLPSLPQLTAAALQQEMGSRGVLIRDASHFVGLDDRYCRFAIKLRSDNEKLLEALAQCLDDFKEDSRDTHE
>NZ_CP016808.1|WP_150131610.1|6115307_6116897_-|cobyric-acid-synthase
MSKQSENNAGLTIMVQGTASDVGKSLVTAALCRIFRQDGYTVAPFKSQNMSLNSYVTWDGKEIGRAQGMQADACGVLATTDMNPILLKPTKEMSSQVVVHGKPLRDFSAREYRESYLPQAGVIVREALARLRSSHDIVVLEGAGSPAEINLKDRDIVNMRMAAWADAPVILVADIDRGGVFASIVGTLELLEPHERERVCGFVINKFRGDVGLLQPGVDWLEERTGKPVLGVLPFLPGLALEDEDSLSLDRKLEEQVKQRPDTLDIIVLRLPRISNFTDADPLYFEADVMLRFVDRPEQWGTPDAVILPGSKNTVEDLLWLREMGLAQQITAFAEKGGYLVGICGGYEMLGAMLLDPAGVESEHKETPGFGFFPFDVKFAGEKKTVRVEGHARAAAAWLTEQLPVEGYEIHMGEIFQHGVLRQPFAIRSQLAGVEPLQDGGLDYAGEGACSVDGRLWGTFIHGILHNDDLRRAWLNDIRIARGWEPLAAALRFRENREEAFDRLAEHTRQHLNMPLVYKVLAAGGKLGS
>NZ_CP016808.1|WP_099520618.1|6127881_6128358_+|YfbM-family-protein
MGMIGIYLAVYNEQIEQIAQGELLMEEMAPDAFGKLDIDKAWQAIHYVLCEEIDNGSPPIGYVVPMLDDQALDFSEFGAFYLNHKQVTEASIAISAISEAGFRERYSLAALVENAIYPVGSDEDEQEFFDYIYANFVEIGLFYSKAATEGKGIIFYIS
>NZ_CP016808.1|WP_046233130.1|6128462_6128771_-|rhodanese-like-domain-containing-protein
MYNEITPEQVEARLNNKEKFHLIDVRELDEWEEGHIAEAAHLPLSEIQERLDELPKDENIIFVCRSGGRSGKVCGFLAPQGYSVTNMTGGMLAWPGAIVTGA
>NZ_CP016808.1|WP_099520619.1|6128890_6131911_-|VWA-domain-containing-protein
MGMQADSPWALLLLIPWAAAVWWMNRGTLRLQGTRKKIAIALRALILLLVIAVAAGVQPYWRVEQRNVIFVADRSASVNADASLGEWIAKASAAKDEEDRSGIVSIGLDAAIDKVLSPDELPSAERYTFRSGVNENFTDLSQALRLASGMLHEAGGGKIVLLSDGAENAGSMLRQAELLKHAGIEVDVVPIAAPQRVDASLEAMDVPQTLRQGEKFTFEFTINSTSSGTAKLRLYEDNRELSTSDIVLEPGENRFALQSAALEPGFHRFRAELYAEGDEREQNNTAYAFSRVSGPPAVLIVEGVPGSSGNVEAALKASLIRYETIPPERLSVQLASYAAYDSIILNNVPATRIAAKPMEWLGKAVSDYGIGLVMLGGDNSFGLGGYFQTPIEKALPVYMDLKGKRQLPSLGLILVIDRSGSMSGGKLELAKEAAMRTIELMRPEDSVGVVAFDSTPWWIVEPTKLTDRDDVLGKIQGIQAEGGTEIFPALDTAYNKLLEMDAQRKHIILLTDGQSASNPGYAALTQGMVDNKMTMSTVAVGDGADQAMLEQLAKQAKGRFYFTNDESTLPAIFSRETVLMSRTYIVEQNAPPLIGQAGSWATMWQNGLPDLQAYIATTSKETAEVALLSPQGDPILARWAYGSGRTVAWTSDLTGKWSRDWVQWSALPNVLAEWIKWTFPQFESTPYSASAELDGREAMLRLRTEGSDTAAKLSAVVTDEAGKSTTLSPLPAAPGEYAASLPVSEPGVYLMQVNEETAAAGGAETPNTGGGTTTGFVIPYSPEYRLTGENGTEALQQLANATGGRLLSLDAPQEVYRFNPVESRQPYNWTRELLLLILALWLLDILLRRLSLPWHRIGRMLLARLGLAGGRLQRKEPVAAAPSGAMSRLQQRKSRTAGFYGEHAGTSDAASASPAAGQAKGTGADLAGVQRAAIHSSHTASGTERVQAVRPEGQGQAGKQQRDVQQFKSVGTSSQSSAPPANPEGKPAGNQATVNRLLAAKKRGKR
>NZ_CP016808.1|WP_099520620.1|6131894_6133880_-|VWA-domain-containing-protein
MQLLSPLSALFGLALPAIVLMYLFKRTYMDTEIASHMLWNRMLREQEANRPWQKLRTRPLMLLQLLAAAVLVLALMQPYLTADSRSGSHTVIVLDRSASMTAAMPGGSSQGSLLHAAVQQAELWLSEQQKGELITLLVTGEQPRIILSKETDHELVLQQLKAITPDFGAQDNVAALSLADSLLANEQGGKILLLTDGRWQDADSVNLLTLHAKLEQFKPTAPQAGSNNSAILYFGIHAAVGEDGKRAGVVTLRNDSAASKQIQLAVYADKESEPAATKSVKLEAGGWTSVDMNGLPEEASYYTAKISGATDDYAADNIAYQFPIVSKAQQVLLATSGNLFLEKALQLAGVKTIKVDPAQYVPSKEHVKDIDWVIMDGDIAKLRTDKSWQELFASKPVWYIDHPEATGEETASPANSRVAIAGHPVTAYLSFEDTHIGRMVKANDAGTWGEAIVTYGGLPAIYAGSVQGRPQLRFTFDMQSSDLPLRPEFPVLIVQAADWMSGGSQAQLGTADAGSALQLAFLNETVSAKWEMIETIGGYSEKSLPDSNLSAALAAQEPAIAPAVPGLYRLMEQNAEGETIGQRMLAVNAASAESASMSATADIKPIAAASSETSQNQADAGSAAGSMETANAANVFAAWLALALLALMLVEWEVYRRGNAG
>NZ_CP016808.1|WP_099520621.1|6133939_6134980_-|DUF58-domain-containing-protein
MNGQGSGSGSGAQHSAFSGALAKLFPDSSLLHRLERMKVAAGSRVKGTMAGKRRSSTLGGSQEFADYRPYAPGDDIRRLDWNVYGRTGRAYMRQYWDEQELTLHVYVDVSPSMNFGGEQANKLRCALQLAASGGYAALSGEDRVAVKLFGGTAQAELPSLRGRGSTARLFHFLAAALEREMEQPSFQQGDALQPSMTGVGRAMEQQAAALSMREAIQQAGQLPHRTGVTWVVSDAMYESGIEQTLLSLLAARQQVVFLHLLSPEELNPALTGELNLLDSELGTGKEVALGSRLLEQYRVTVNDYCSHLKKLCAERGALYIFIDTSKPMEQTVQQTLLRAGVLHSHS
>NZ_CP016808.1|WP_099520622.1|6134976_6135966_-|AAA-family-ATPase
MIESKEQITQAAERIAALQAEIGSVIVGQKTVVEQLLWCLLAGGHALLEGIPGLGKTMLVRTVADTISLQYSRIQFTPDLMPADITGTTLIDFTEQGAAGRSFQPGPIFGNLVLADEINRATPKTQSALLEAMQEGTVTAGGETRQLPRPFFVLATQNPIEQEGTYPLPEAQLDRFLLKIGVSYPTREELKEIVLRTTAAVQPRAQVKMNGEELTELQLYAKHILVADDVLDLAVRLVMMTHPAEADAPDDVKRYVRFGAGPRALQAIVAVSKVRALCSGKLHVSWSDIREVAVPALRHRIVLGYEAQAAGITTDQMAESILSALELTR
>NZ_CP016808.1|WP_172455644.1|6135982_6137737_-|hypothetical-protein
MEPSGSSRAKEEQQQLPELLLPVRLRLTMFTMCKYGLKGLLIGSSAGLLLLVASRLWPLLHARPAAVILAAAGLLAGLLYGLWRRASLRDAARAMDRHDTDDAVSTALDGWLRPAGQPSAIVLLQRQEAIAAAKAYAAMLSKRLPWPAWPAWKRAVLGVGAVWAISALLLVWANPLDHLAEERAAERQQLEALREEAAALAEEAEQADVPEEAKRQLAEPLEKLRSKLEENDSDMEAALAELAEAMRELEQTAELAKQTASQLDEAAEAMQREPALKQLGAALQDRLESGMREAISDMRSELQKLTPEQKEQLAQALEQLAEQLPQDKEALASALAEAAEQARNSEAGDDASGETEGGDGLAALEEALAGELLQVQLEQLASAMASQLGQSGQPLAGQLAASGGTVPPSWAAAASGNSSPGGSSAGGASGSPSEPGSGAAPGSSGASGSGGDPSSSGAGAGAGAGAGAGSGTGAGAGAGQGAGSGSGSGQGGLQGGTGAGGRTLVTTPRTMAGEGNVEEDGGPSTGGQEQTGGKSPMIDGTTRPYEEVYSEYATEAKKALGRSQLPQAMQDKVKQYFDNIQPNR
>NZ_CP016808.1|WP_099520623.1|6137775_6138669_-|ABC-transporter-permease
MRNDTVSKDWRSKLINPVLDKEFRLRMRTPRTMWTLLAYLFAIGLFALSSIYLLNMSSGNTASFNPTESRILFYFLSFVQLGLISFMAPGLTAGVISGERERQTLNLLLTTQQSSTTIILSKLLSSLSFMILIVISTLPIYSMMFLFGGISPVQLLLVFCFYLFLMIVIGAFGVLFSTLVKRTMIAVILTYGVTLFLYAGTALIGYVAIMVSMQVSGNSSSNEWIAHIFAWNPAVAMYSILDPNITREIVYSGSGATATEPILQLWQEFMLIYLVLAALAIWLSIRYLRPRMKQNRK
>NZ_CP016808.1|WP_099521825.1|6138665_6139598_-|ABC-transporter-ATP-binding-protein
MIEIKGLSKSFGSFHALKSLDLTIAKGKVFGFVGPNGAGKSTTMSILATLLSPTSGYAKVDGFDVTKHPAEVRKRIGYMPDFFGVYDQFKAVEYLHFYGASYGIPKKEREELIPQLLELVNLSDKRDAYVDTLSRGMKQRLCLARCLVHDPDLLILDEPASGLDPRARIEMREILLELKAMGKTIIISSHILPELAEMVDEIGVIEHGQMIAQGNVSDIQNRLRVKRILYIRLLERLDEAEQFLQEQPHVTRLMRDERGIHVHFSGQDIEQAELVGELIAAGYRIISFSEGQTNLEDVFLEITRGGDGFE
>NZ_CP016808.1|WP_099520624.1|6139671_6142053_-|hypothetical-protein
MSRLGFKLKFFVMMIMIASLCADLGTTGSKAFAETAGIELKAEAGYQGSVKVDKRMPAHLTLTNRTNADLKGEVVISIISPYGGMTTDYVVPVELPKETPVELTVSLPGTQLSKDNNKIRFFEGASAKGKEVAFIGKAFLDSNGTSDYTFGVLASDPDTLNFMPSLNVRGYQISVMPLTREQLPNEASLLDYFDVLAINDVATSDWSEQQVAAITGWISKGGTLLLSGGAGYSKTAKAFAAIAPVEPDGGTVSQPISPEMANAGEAKSASAGDMTLSTGKLAAGATKLLGGETPIAVERKLGLGKVLYIAFDPALEPIASWSGSATLYANWLQSSLFPMQQGYMSGNNAYWGFQQIVDQFPSITPPNFGLLLVMFIIYMIIVAPVLYLVLRKADKREWSWWLIPLISIICAVAIFFFGAENKRFMSTHTVQTVQLSGQGGGVKTGAFSIFVPNGGEVVARFDETLPLTPYASGSSTGDLNLRSDSRVVSIEGQTTAEWKNVEYWSTRKAVFENVPMQEQVGQFKVSYQNSNGQIEYIVKNDTLNDLKDVVVVMNGSSYSIGDLKQGEKGSALISNNPNTNMGYFNYGSMMFPYQSGNQDTFSRQRTLVETYFNMNYSSSKIPMIYGPVIIGFSENEDALFTVNNNKVKAANLTMWVQSLGEMEPDENGRLVVPAGFVNPVIIDNSVNRLENYGNSTFSIGQGELVMEYSFPQREHLTYDQLDIHLDPSQSGQNLKWLIWDEAQGKWIKVAAEMDDPSSYLIDGFKLRMKLIVNTDLETRMPQVAVEGEVAKHE

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Crispr_ID: NZ_CP016808_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_12

6148557-6148696

Orphan

Consensus_repeat	Method
GCGGCAAAGCTGCCGTTTCACGTAGAAATATAGATTAAGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016808_12

>merge|NZ_CP016808|12|6148557-6148696|CRISPRCasFinder
GCGGCAAAGCTGCCGTTTCACGTAGAAATATAGATTAAGGATGGCGCTAGGTTATCCTTTTCTATATTTCAAGTGTAAACGGCTGAAGCCGGCCTTTGGCGGCAAAGCTGCCGTTTCACGTAGAAATATAGATTAAGGAT

>NZ_CP016808|12|11|6148557-6148696|CRISPRCasFinder
GCGGCAAAGCTGCCGTTTCACGTAGAAATATAGATTAAGGAT	GGCGCTAGGTTATCCTTTTCTATATTTCAAGTGTAAACGGCTGAAGCCGGCCTTTG
GCGGCAAAGCTGCCGTTTCACGTAGAAATATAGATTAAGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099520626.1\|6144493_6146245_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP016808.1\|WP_150131611.1\|6143711_6143840_-\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NZ_CP016808.1\|WP_056038065.1\|6148009_6148501_-\|YlbF-family-regulator	unknown	unknown	gnl\|CDD\|226923
NZ_CP016808.1\|WP_099520628.1\|6148763_6150353_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|184624
NZ_CP016808.1\|WP_099520629.1\|6154450_6155080_-\|RecX-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237619
NZ_CP016808.1\|WP_099520625.1\|6142412_6143618_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341043
NZ_CP016808.1\|WP_099521826.1\|6147239_6147866_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP016808.1\|WP_099520624.1\|6139671_6142053_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_056038071.1\|6150610_6151186_-\|phosphate-propanoyltransferase	unknown	unknown	gnl\|CDD\|237899
NZ_CP016808.1\|WP_046230783.1\|6158708_6159200_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|213038
NZ_CP016808.1\|WP_056038085.1\|6157911_6158487_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP016808.1\|WP_056038082.1\|6156521_6157769_-\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|234789
NZ_CP016808.1\|WP_056038078.1\|6155199_6156261_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP016808.1\|WP_046230788.1\|6152677_6154219_-\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP016808.1\|WP_099521825.1\|6138665_6139598_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP016808.1\|WP_025335291.1\|6151405_6151666_-\|stage-V-sporulation-protein-S	unknown	unknown	gnl\|CDD\|225234
NZ_CP016808.1\|WP_172455645.1\|6146241_6147111_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|275313
NZ_CP016808.1\|WP_046230789.1\|6151805_6152600_-\|TIGR00282-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|379099
NZ_CP016808.1\|WP_150131612.1\|6143852_6144080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099520623.1\|6137775_6138669_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224196

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099520626.1\|6144493_6146245_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	2.14238e-54
NZ_CP016808.1\|WP_150131611.1\|6143711_6143840_-\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	0.00126108
NZ_CP016808.1\|WP_056038065.1\|6148009_6148501_-\|YlbF-family-regulator	gnl\|CDD\|226923	COG4550, COG4550, Predicted membrane protein [Function unknown].	3.91103e-19
NZ_CP016808.1\|WP_099520628.1\|6148763_6150353_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|184624	PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP016808.1\|WP_099520629.1\|6154450_6155080_-\|RecX-family-transcriptional-regulator	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	1.76043e-39
NZ_CP016808.1\|WP_099520625.1\|6142412_6143618_+\|MFS-transporter	gnl\|CDD\|341043	cd17490, MFS_YxlH_like, Bacillus subtilis YxlH and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Bacillus subtilis YxlH uncharacterized MFS-type transporter YxlH and similar proteins. The biological function of YxlH remains unclear. The YxlH-like subfamily belongs to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.41581e-103
NZ_CP016808.1\|WP_099521826.1\|6147239_6147866_+\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	4.57729e-34
NZ_CP016808.1\|WP_056038071.1\|6150610_6151186_-\|phosphate-propanoyltransferase	gnl\|CDD\|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	2.62598e-123
NZ_CP016808.1\|WP_046230783.1\|6158708_6159200_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|213038	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ. In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.	2.22922e-92
NZ_CP016808.1\|WP_056038085.1\|6157911_6158487_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.47362e-46
NZ_CP016808.1\|WP_056038082.1\|6156521_6157769_-\|competence/damage-inducible-protein-A	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	0
NZ_CP016808.1\|WP_056038078.1\|6155199_6156261_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP016808.1\|WP_046230788.1\|6152677_6154219_-\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP016808.1\|WP_099521825.1\|6138665_6139598_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.10695e-98
NZ_CP016808.1\|WP_025335291.1\|6151405_6151666_-\|stage-V-sporulation-protein-S	gnl\|CDD\|225234	COG2359, SpoVS, Stage V sporulation protein SpoVS [Function unknown].	4.82729e-44
NZ_CP016808.1\|WP_172455645.1\|6146241_6147111_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	2.41802e-63
NZ_CP016808.1\|WP_046230789.1\|6151805_6152600_-\|TIGR00282-family-metallophosphoesterase	gnl\|CDD\|379099	pfam13277, YmdB, YmdB-like protein. This family of putative phosphoesterases contains the B. subtilis protein YmdB.	2.51371e-156
NZ_CP016808.1\|WP_099520623.1\|6137775_6138669_-\|ABC-transporter-permease	gnl\|CDD\|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	5.43276e-09

>NZ_CP016808.1|WP_056038065.1|6148009_6148501_-|YlbF-family-regulator
MSEQQTVQGNTEHGHHHHEHGEGCGIPKFDTRDLLIREDIMKKAKELADLIYTSEEVQHYRRAESQIQGNTKIQELIATVKKKQKELVAFETTFKNETMVKKIEQEMEVLQDELDGIPIVTEFQQSQSDINYLLQLVISIVRDTVSEKINVEAGAEEAPAECD
>NZ_CP016808.1|WP_099521826.1|6147239_6147866_+|biotin-transporter-BioY
MKSSTNIRSMVYIALFAALFIVMSSLQFKFAASPVPITLQTLAVALAGIFLGARNGFFSILIVVVLATIGLPLINGNGGFGMIAGPTGGFLVAFPFCALLVGFFTSKLLHSSFAAKNRIATAILLFVIFELFSSFFAYVIGIPWLMQATGLSFQKAMINGCYPFLPGDAAKSVLAVIITLALKPYILRIQASTGNKNAASAVPFTTTP
>NZ_CP016808.1|WP_172455645.1|6146241_6147111_-|ATP-binding-cassette-domain-containing-protein
MNDYLIRVEGLTVKPRVFDAASEQPPIIRAVSLALKEGDWLTLLGSNGSGKSTLAKAIAGFPVGEKSGTYLMGSKLAAYKRPIPIVMQQPEASMLGATPWEDVVLMLEQHGIASDEIAALAEQSLRLTGLLERKDQAVGTLSGGQKQLTAIAGCLAVNSPVLVLDEATAMLDPEASLAIGEQVRELHAAGGTIIWITQKLAELRHGDRVVVMEQGQIVFDGTTASFYERHAILKDAASTGSEDEGRSWCERLGFEAPYAVQTAWELEKLGIVIKPLPLTIDRLAEALQR
>NZ_CP016808.1|WP_099520626.1|6144493_6146245_-|ATP-binding-cassette-domain-containing-protein
MTDLSWRLEEIRVCAAGERDKTLLTIKEKLVFKEGTITLLIGSNGAGKSTLLETMAGLRKLNEGEIALGADNLWVKKGRRRLLSRSVALNTGIALQHSESQWFAATVKEELLYSLKPYKLEPPDKERRLQEALQAAGLPAELLARDPWSLSGGQQRRLALACLLACEPQWLLLDEPTAGLDAEGISRLCAVLAAHKAAGRGAVVATHDPGALLPLADEVVVVVDGSVREAVAASAWANAHAADAAAPQALRALAKLRCFAAPPPGAGAAVWPAPQALAAAIHAAAAALPGAAALPLAAPQAPPAMELRPSPGADPTAANASPPLPKPKRRQLPPAQPEAQRLATRFDPRALIAAYMLLAASIIMQHSWSGLLLAGALAGAIWLPLRAQMRPWLGFIRAYALIILLFGAVAGAQIQPLSFDWEQSARTMLRLATLFCAMLLGLPMLLLMTPLRIQRALEQTFGWLSRFKVPISAITLTVTLIFRFIPLLLKEWERFAKIAHARGKAITPVGSLPLSMLASAIIPYIRAILRIAEQMAEALEARGFGNSEIRSTQGFRLRFGRQDVLLLAGAVFGAALLYVAALF
>NZ_CP016808.1|WP_150131612.1|6143852_6144080_-|hypothetical-protein
MFAATAAVNAETAIPEITVPGCLSLGGISVSTVDTLGSKIIGKKITVDVNHFTNYAVLAVDSHPIKVNFSDISGH
>NZ_CP016808.1|WP_150131611.1|6143711_6143840_-|S-layer-homology-domain-containing-protein
MKQAVSSIVNGYADSTFKPGKMVSQAEFVVMLMNRPSAELQK
>NZ_CP016808.1|WP_099520625.1|6142412_6143618_+|MFS-transporter
MSTALSASEPAHSTASQRLLFTIVTLLYWTSMYVYVPTLSPFLSGRGLSMQLIGIVLGSYGFVQMLVRFPVGVASDRFGKRKPFIILGMVTALLSCLMFLVPGHWLWPLGGRAMAGICASTWVAFTVMYANYFAAEDAAKAMGSISVMIVSGQMLGMLMSGTVTDMWGDAAPFITGAVIAGVGLLLALILKEPQKQLHERVGMTLAMARSIIGTKLLLQVSLLSILAHGVLFITMFGFTPLKAETLGITGYGLTFIVFAFMLPHALASMFTAKWFAPRFGNWVTIGIGFVLSAICTVAIAYTDSFAMLVLTQAINGFAQGLHLPLLLGLSIRDVQPAGRATAMGLYQAVYSIGMFSGPFLAGWLNDSWGMNSGFWFGGLLGAAAALLSAWWYRKELREKGH
>NZ_CP016808.1|WP_099520624.1|6139671_6142053_-|hypothetical-protein
MSRLGFKLKFFVMMIMIASLCADLGTTGSKAFAETAGIELKAEAGYQGSVKVDKRMPAHLTLTNRTNADLKGEVVISIISPYGGMTTDYVVPVELPKETPVELTVSLPGTQLSKDNNKIRFFEGASAKGKEVAFIGKAFLDSNGTSDYTFGVLASDPDTLNFMPSLNVRGYQISVMPLTREQLPNEASLLDYFDVLAINDVATSDWSEQQVAAITGWISKGGTLLLSGGAGYSKTAKAFAAIAPVEPDGGTVSQPISPEMANAGEAKSASAGDMTLSTGKLAAGATKLLGGETPIAVERKLGLGKVLYIAFDPALEPIASWSGSATLYANWLQSSLFPMQQGYMSGNNAYWGFQQIVDQFPSITPPNFGLLLVMFIIYMIIVAPVLYLVLRKADKREWSWWLIPLISIICAVAIFFFGAENKRFMSTHTVQTVQLSGQGGGVKTGAFSIFVPNGGEVVARFDETLPLTPYASGSSTGDLNLRSDSRVVSIEGQTTAEWKNVEYWSTRKAVFENVPMQEQVGQFKVSYQNSNGQIEYIVKNDTLNDLKDVVVVMNGSSYSIGDLKQGEKGSALISNNPNTNMGYFNYGSMMFPYQSGNQDTFSRQRTLVETYFNMNYSSSKIPMIYGPVIIGFSENEDALFTVNNNKVKAANLTMWVQSLGEMEPDENGRLVVPAGFVNPVIIDNSVNRLENYGNSTFSIGQGELVMEYSFPQREHLTYDQLDIHLDPSQSGQNLKWLIWDEAQGKWIKVAAEMDDPSSYLIDGFKLRMKLIVNTDLETRMPQVAVEGEVAKHE
>NZ_CP016808.1|WP_099521825.1|6138665_6139598_-|ABC-transporter-ATP-binding-protein
MIEIKGLSKSFGSFHALKSLDLTIAKGKVFGFVGPNGAGKSTTMSILATLLSPTSGYAKVDGFDVTKHPAEVRKRIGYMPDFFGVYDQFKAVEYLHFYGASYGIPKKEREELIPQLLELVNLSDKRDAYVDTLSRGMKQRLCLARCLVHDPDLLILDEPASGLDPRARIEMREILLELKAMGKTIIISSHILPELAEMVDEIGVIEHGQMIAQGNVSDIQNRLRVKRILYIRLLERLDEAEQFLQEQPHVTRLMRDERGIHVHFSGQDIEQAELVGELIAAGYRIISFSEGQTNLEDVFLEITRGGDGFE
>NZ_CP016808.1|WP_099520623.1|6137775_6138669_-|ABC-transporter-permease
MRNDTVSKDWRSKLINPVLDKEFRLRMRTPRTMWTLLAYLFAIGLFALSSIYLLNMSSGNTASFNPTESRILFYFLSFVQLGLISFMAPGLTAGVISGERERQTLNLLLTTQQSSTTIILSKLLSSLSFMILIVISTLPIYSMMFLFGGISPVQLLLVFCFYLFLMIVIGAFGVLFSTLVKRTMIAVILTYGVTLFLYAGTALIGYVAIMVSMQVSGNSSSNEWIAHIFAWNPAVAMYSILDPNITREIVYSGSGATATEPILQLWQEFMLIYLVLAALAIWLSIRYLRPRMKQNRK
>NZ_CP016808.1|WP_099520628.1|6148763_6150353_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTKGNSADLKAANKDRDYSKYFDFSDAKVLSEEDGKITYRIKGRNIQINAAPNHMEEKKRGKEDIEVHYDFSIPEEFRTLGKGKFYLIQTYGCQMNEHDTEVMKGMFEEMGYTATEDRTEADVVLLNTCAIRENAEDKVFGELGHLKVLKQQKPGLLLGVCGCMSQEESVVGRILQKHSFVDMIFGTHNIHRLPFLLQNAYFSKEMVVEVWSKEGDIIENMPKKREGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAEVRELARQGFKEVTLLGQNVNAYGKDFEDIAYRFGDLMNDMSKIDIPRVRFTTSHPRDFDDHLIEVLAQRGNLVEHIHLPVQSGSTEVLKRMSRKYSREMYLELVGKIKAAIPDAMLTSDIIVGFPGETDEQFEDTLSLVREVGFDSAYTFIYSPREGTPAAGMEDNVPLDVKKRRLQRLNDLLKQMSLESHERMIGTTIEVLIEGESKNNANVLAGRTRTNKLVHLEGPQEWIGQLIQAKVTEAKTWYIKAEPTGTELREAVVL
>NZ_CP016808.1|WP_056038071.1|6150610_6151186_-|phosphate-propanoyltransferase
MTQKLVPVGVSARHIHLSQEHVAILFGEGYELTEAKALSQPGQYAANETVAVIGPKSSFPKVRILGPVRKATQLEVSRTDAFSIGVNPPVRESGDISGSAGITLKGPAGEVTIEEGVIVAARHIHFHTSDAEKWGIADKQKLKVRFGGDRGVVFEEVIARVSPDFALDMHIDTDEANAAGIKNGDTAEIVG
>NZ_CP016808.1|WP_025335291.1|6151405_6151666_-|stage-V-sporulation-protein-S
MDVLKVSAKSNPNSVAGALAGVLRERGAAELQAIGAGALNQAIKAVAIARGFVAPSGVDLICIPAFTDIVIDGEDRTAIKLIVEPR
>NZ_CP016808.1|WP_046230789.1|6151805_6152600_-|TIGR00282-family-metallophosphoesterase
MNVLFIGDIVGSVGRAAVKQVLPALKSKYNPHIIIVNGENAAAGRGITKNIVNELFECGVHGITMGNHTWDNKDIFDWIDDEPRIVRPANFAEGTPGQGMAIIKANGKQLAIINLQGRTFLPPIDCPFRKADELIEEAHETTKNILVDFHAEATSEKIAMGWHLAGHASVVVGTHTHVQTNDDTILPGGTAYLTDVGMTGPKDGVLGMERNAVLHRFMTQMPTRFVVDEGKWHLHGVSIQIDDATGETTKFQKIRLVEEDWLLM
>NZ_CP016808.1|WP_046230788.1|6152677_6154219_-|ribonuclease-Y
MNPIWTILISLVVGVIFFGVGYFIRKSIAEAKISSAEQAAIQIVENAKKEAEAQKKETVLEAKDEVHKLRTEAEKDIRERRNEVQRQDRRLLQKEESLDKKLEALERKEELVANKEKRIDETQEQIDTIYKQQLSELERISGLTMEGAKSIILSNVEQEVRHETAQMIKEIEQQAKEEADKKARDIISLAIQRCAADHVAETTVSVVSLPNEEMKGRIIGREGRNIRALETLTGIDLIIDDTPEAVILSGFDPIRREIARTSLEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQATFEVGVHGLHPDLIKILGRLKYRTSYGQNVLKHSMEVAYLTGLMAAELGEDITLAKRAGLLHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADALSAARPGARRETLETYIKRLEKLENISESFDGVEKSYAIQAGREVRVMVQPEKIDDTEAFRLARDITKKIESELDYPGHIKVTVIRETRAVEYAK
>NZ_CP016808.1|WP_099520629.1|6154450_6155080_-|RecX-family-transcriptional-regulator
MIEIRAVEKDSKHRSRYLIFAEGEEPILSVHEDLLIRHTLFKGQLLTEAQIEEIGSEDERYRAYAMAVYYLGFKPRTSKQIEQYLKRKLIAEDHINYTIERLEKEHIVDDEQYAMQFAAQRMKSSQKGRRYIQQELLQRGVSKTAALAATSAIDSEMELETAIATASKKWRTIKGEPFERRRKLAAFLIRRGFPVDIIKAAVKSAEENA
>NZ_CP016808.1|WP_056038078.1|6155199_6156261_-|recombinase-RecA
MADRRAALDMAMRQIEKQFGKGSIMKLGESTHMQVEVVPSGSLALDIALGIGGFPRGRIIEVYGPESSGKTTVALHAIAEVQRAGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAISKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIETLKQGNDMIGNRTRIKVVKNKVAPPFKQAEVDIMYGEGISKEGTLVDLGVELDIVQKSGAWFSYNGERLGQGRENAKQFLKDHEDIADVIDKQIRDASNLVATATQATGLGQEEEDEDDFDESELD
>NZ_CP016808.1|WP_056038082.1|6156521_6157769_-|competence/damage-inducible-protein-A
MKAEIIAVGTELLLGQIVNTNAQYLSQELAALGIDVYFQTVVGDNPERIRKAIVTARERADLLVFTGGLGPTLDDLTKDVLAAYLSRGLSLHKPSMDKIEELFSSRGVHMVESNRRQALSIDGSVPLHNAAGLAVGNALTEDGTHYMLLPGPPREMKPMIDGPGKEWLRTLLGHEQPLYSRLLKFAGIGESNLEAKLLDLIEAQVDPTIAPYAKEGEVAIRVSTKAATQAEADGKIDATVEQIIERIGEHLYAQEDIPLEEAVIRLLRASRRKLASAESCSGGLLAELITSVPGSSGEYTGGVVTYTNEMKHALLGIPLAQLEGEGAPGAISESTAALMAERVQQLADSDFGVSITGVAGPAESEGKPVGLVYIAIAERGKETMVYPLQLSGSRTIIRVRAVKTLLYRLWLAIQN
>NZ_CP016808.1|WP_056038085.1|6157911_6158487_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNLANKITLVRIILVPIIMVFLLVNMNVGSVVFDDYSITYNQIIAAIIFIVAASTDGLDGYIARKNKIVTNLGKLLDPLADKLLVAAVLISLVEMDKLAGWIAILIISREFAVTGLRQIALLEGSVMAASNWGKWKTAIQITMIISLLLNNFPFAFISFPFDLIASWVAVAITLYSGIDYFVKNKHLIPVE
>NZ_CP016808.1|WP_046230783.1|6158708_6159200_-|YajQ-family-cyclic-di-GMP-binding-protein
MSSESSFDIVSKVDMQELNNAIQQAEREIETRFDFKGSKSSIKLENEELVLVSDDEYRLNSVIDILQSKMIKRGVPIKNMDYGKIQSASANTVRQHVKLKQGIDQEHSKKINILIRDSKLKVKSLIQGDQIRVSGKSRDDLQAVMNLLRGANLPIELQFTNYR

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Crispr_ID: NZ_CP016808_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_13

6848543-6849170

TypeI

I-C:NA

Consensus_repeat	Method
GTTTCAATCCACGCTC-TCGCACGGAGAGCGAC	PILER-CR
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CRISPRCasFinder
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CRT

9 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP016808_13

>merge|NZ_CP016808|13|6848543-6849170|PILER-CR,CRISPRCasFinder,CRT
GTTTCATTCCACGCTCTTGCACGGAGAGCGACGCATGCTCGCAGAAGATTTAGAGTTTAGGTTACGTGTTTCAATCCACGCTCTCGTACGGAGAGCGACTGATAAACACAGGGATTTTTATGATGCGATTATGTTTCAATCCACGCTCTCGCACGGAGAGCGACGTAGCGCCTTATACGATGAATTTGAGCTTCTTTCTGTTTCAATCCACGCTCTCGCACGGAGAGCGACTGACGCTCGTTCCGCACGCTTCAAACCGCGTGTAAGTTTCAATCCACGCTCTCGCACGGAGAGCGACCCAGAACGGTCCTGGCGGCGGCCACAATATTGGACGGTTTCAATCCACGCTCTCGCACGGAGAGCGACGCGGATTTACATAAATAACCTTCCCGTCAACAAGTTTCAATCCACGCTCTCGCACGGAGAGCGACCAAGATGCGGCGTGAATATCAAACCACCGCTGGGTTTCAATCCACGCTCTCGCACGGAGAGCGACGCAAGCATAAATGTGACGCGCAAAATGATTGCACGTTTCAATCCACGCTCTCGCACGGAGAGCGACGGCAAATTGATGGTTTTAAGCTCACAAACAGCAGGTTTCAATCCACGCTCTCGCACGGAGAGCGAC

>NZ_CP016808|13|8|6848543-6849170|PILER-CR
GTTTCATTCCACGCTCTTGCACGGAGAGCGAC	GCATGCTCGCAGAAGATTTAGAGTTTAGGTTACGT
GTTTCAATCCACGCTCTCGTACGGAGAGCGAC	TGATAAACACAGGGATTTTTATGATGCGATTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GTAGCGCCTTATACGATGAATTTGAGCTTCTTTCT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TGACGCTCGTTCCGCACGCTTCAAACCGCGTGTAA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCAGAACGGTCCTGGCGGCGGCCACAATATTGGACG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGGATTTACATAAATAACCTTCCCGTCAACAA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAAGATGCGGCGTGAATATCAAACCACCGCTGG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCAAGCATAAATGTGACGCGCAAAATGATTGCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GGCAAATTGATGGTTTTAAGCTCACAAACAGCAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC

>NZ_CP016808|13|12|6848543-6849170|CRISPRCasFinder
GTTTCATTCCACGCTCTTGCACGGAGAGCGAC	GCATGCTCGCAGAAGATTTAGAGTTTAGGTTACGT
GTTTCAATCCACGCTCTCGTACGGAGAGCGAC	TGATAAACACAGGGATTTTTATGATGCGATTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GTAGCGCCTTATACGATGAATTTGAGCTTCTTTCT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TGACGCTCGTTCCGCACGCTTCAAACCGCGTGTAA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCAGAACGGTCCTGGCGGCGGCCACAATATTGGACG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGGATTTACATAAATAACCTTCCCGTCAACAA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAAGATGCGGCGTGAATATCAAACCACCGCTGG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCAAGCATAAATGTGACGCGCAAAATGATTGCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GGCAAATTGATGGTTTTAAGCTCACAAACAGCAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC

>NZ_CP016808|13|9|6848543-6849170|CRT
GTTTCATTCCACGCTCTTGCACGGAGAGCGAC	GCATGCTCGCAGAAGATTTAGAGTTTAGGTTACGT
GTTTCAATCCACGCTCTCGTACGGAGAGCGAC	TGATAAACACAGGGATTTTTATGATGCGATTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GTAGCGCCTTATACGATGAATTTGAGCTTCTTTCT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TGACGCTCGTTCCGCACGCTTCAAACCGCGTGTAA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCAGAACGGTCCTGGCGGCGGCCACAATATTGGACG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGGATTTACATAAATAACCTTCCCGTCAACAA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAAGATGCGGCGTGAATATCAAACCACCGCTGG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCAAGCATAAATGTGACGCGCAAAATGATTGCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GGCAAATTGATGGTTTTAAGCTCACAAACAGCAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099521096.1\|6849737_6850766_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP016808.1\|WP_150131618.1\|6848068_6848356_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099521091.1\|6842381_6843224_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016808.1\|WP_099521093.1\|6844136_6845237_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP016808.1\|WP_099521100.1\|6861193_6862012_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP016808.1\|WP_099521101.1\|6862097_6862793_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132880
NZ_CP016808.1\|WP_099521874.1\|6850789_6851494_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP016808.1\|WP_172455670.1\|6836117_6836759_-\|carbohydrate-binding-family-9-like-protein	unknown	unknown	gnl\|CDD\|187678
NZ_CP016808.1\|WP_099521088.1\|6836931_6837837_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP016808.1\|WP_099521097.1\|6852499_6854404_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP016808.1\|WP_099521102.1\|6863244_6864504_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237360
NZ_CP016808.1\|WP_099521873.1\|6839214_6840750_-\|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|275079
NZ_CP016808.1\|WP_099521099.1\|6855091_6857431_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016808.1\|WP_056042045.1\|6851527_6852442_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP016808.1\|WP_099521089.1\|6837950_6838991_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP016808.1\|WP_099521095.1\|6849431_6849725_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP016808.1\|WP_099521094.1\|6845894_6847889_+\|DUF4832-domain-containing-protein	unknown	unknown	gnl\|CDD\|374373
NZ_CP016808.1\|WP_099521098.1\|6854400_6855075_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP016808.1\|WP_099521092.1\|6843234_6844128_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP016808.1\|WP_099521090.1\|6840958_6842323_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099521096.1\|6849737_6850766_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	2.41297e-180
NZ_CP016808.1\|WP_099521091.1\|6842381_6843224_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.49599e-72
NZ_CP016808.1\|WP_099521093.1\|6844136_6845237_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.90673e-62
NZ_CP016808.1\|WP_099521100.1\|6861193_6862012_-\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.81805e-26
NZ_CP016808.1\|WP_099521101.1\|6862097_6862793_-\|DNA-alkylation-repair-protein	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.56571e-44
NZ_CP016808.1\|WP_099521874.1\|6850789_6851494_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.42602e-28
NZ_CP016808.1\|WP_172455670.1\|6836117_6836759_-\|carbohydrate-binding-family-9-like-protein	gnl\|CDD\|187678	cd09620, CBM9_like_3, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily may co-occur with various other domains.	5.13901e-50
NZ_CP016808.1\|WP_099521088.1\|6836931_6837837_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.28628e-25
NZ_CP016808.1\|WP_099521097.1\|6852499_6854404_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP016808.1\|WP_099521102.1\|6863244_6864504_-\|tyrosine--tRNA-ligase	gnl\|CDD\|237360	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.	0
NZ_CP016808.1\|WP_099521873.1\|6839214_6840750_-\|right-handed-parallel-beta-helix-repeat-containing-protein	gnl\|CDD\|275079	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase.	5.77658e-09
NZ_CP016808.1\|WP_099521099.1\|6855091_6857431_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.55347e-60
NZ_CP016808.1\|WP_056042045.1\|6851527_6852442_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.2664e-150
NZ_CP016808.1\|WP_099521089.1\|6837950_6838991_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.51343e-91
NZ_CP016808.1\|WP_099521095.1\|6849431_6849725_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.52858e-31
NZ_CP016808.1\|WP_099521094.1\|6845894_6847889_+\|DUF4832-domain-containing-protein	gnl\|CDD\|374373	pfam16116, DUF4832, Domain of unknown function (DUF4832). This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Bacteroides and Capnocytophaga species. The function of this family is unknown. Distant homology analysis suggests a possible similarity of proteins from this family to TIM barrel glycoside hydrolases and, subsequently its involvement in carbohydrate metabolism.The domain lies downstream of glycosyl hydrolases 42 suggesting that as a domain it might represent the carbohydrate-binding region of the enzyme.	7.01076e-16
NZ_CP016808.1\|WP_099521098.1\|6854400_6855075_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	7.55665e-118
NZ_CP016808.1\|WP_099521092.1\|6843234_6844128_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.86176e-70
NZ_CP016808.1\|WP_099521090.1\|6840958_6842323_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.4766e-74

>NZ_CP016808.1|WP_150131618.1|6848068_6848356_-|hypothetical-protein
MKKSKLVLLGMVIILCLISAIPVSAQSVTNANSNVIAPAAYCPSCTMIGLPYPKKDYSRSDFIGATIQYNGYTYRFLEIDDSLSTSTRWWTVWYR
>NZ_CP016808.1|WP_099521094.1|6845894_6847889_+|DUF4832-domain-containing-protein
MFKAAGNKKLLVHLFLIFALIFAIFQPIGTVPGAQAATITVDGNVSDWSSINALATGTGAAQSFKMTNDGTNLYLLIQGSGLSTATGSFWLNIDNNTATGYQASGWGATGIEWLLENAGLYRYAGTGSNWSWNANTTLSSSQFFRSSSVIEVAIPLATLQISAGSTIQAGYIDNNSTTSRLPAASQTLPSYLLTSSGGSSDPGGATTVAYPLELDSPLNNPFKGWAPSAKTTGYPQQHKLVYAGVTWKELESTKGTYNFAAIEATNNFAHWNSLGVKVVLRFILDSPTGAAHRDIPDWLYNDMVALGQSPGTAYNDTTGGMGTGNNMGFSPNYSSAYLIERHKLAIEAIAARYNTNERPVAFVQIGSIGHWAEFHTWPYVGPNGEANYTGAFPPNAISNQYVQHYIDAFAGKEDKMQVLIRRSIALAKTNNKGLVMGMFNDVFGHKDSFDADWGWYTGTQNGYWDDIGQQQPAHANFWETRISGGEFYGGASGMTAALTTGSGFTETQRQTELSKPSWLGPNSPASLAVGNTLQSNMDTLKKRMGYHFVVKEISHPSAITGSTFATTIKVENKGVQHFPFGWPVEIQLRSGNTIVAKKTTTVDLRTWKTGTYTISDSIPVTGLAAGTYDIAIAIISPQTNAPGVDFANTNRLADGAYKLSSVTK
>NZ_CP016808.1|WP_099521093.1|6844136_6845237_-|Gfo/Idh/MocA-family-oxidoreductase
MGNIRMAFIGVGDMGSHHCIGFDLLPDSDVRYICDMNEANVARTVAELKNSSPVIVTDYRELLHKEDVDAVVISVPNYLHREVAVAFLEAGKHVFLEKPVAHTIEDCDAIIEAAEKSGRILQIGLVYRYSNLYRRMAKELENGRLGDVKLMWCKEFRDPFPPTEWFYDKSRSGGAIVEKDCHHFDIFNWMIQANPVRVFASGGQHVMKQGQENLITNSYSHYPAKNISDTSIVDHAFITIDYDNGSKANLGLCMYLKPRNLLGEGLEIGLIGDNGGQMVARNDKTIDIVGGEDWTKDHLDIDVTSDSIMGGHTGGQTQRIDFLKCVREGRQPFATAQVGRNALLIALAAEKSILEERYVYLEEITG
>NZ_CP016808.1|WP_099521092.1|6843234_6844128_-|sugar-ABC-transporter-permease
MMNSLRKYDTLLFFLFIMPWIIGFTIFFLIPFGTSVFYAFTDAKLPGAVNYNFVGFDNFIHMIDDPIFLKSLLNTMYFVVFGVPIVTAGMLVLAMLLNFNVKGIALFRTFYYLPTLVPIVATVIIWRLVFNAEFGILNAGLGLLGFDKTDWLGSEHTIKPVIILLQVWISGSGVLIFLAALKNVPRHLYEAAEIDGAAGVRKFLAITLPMISPSILFVIIIQTMYNFQMFTEALLLSKGGPNYAAYTFVYNIYKSAFTDLKFSMAMSQSIFLFALISLVTFVLMKISNRFVYYEGER
>NZ_CP016808.1|WP_099521091.1|6842381_6843224_-|carbohydrate-ABC-transporter-permease
MNGGQKSSMTAAVSKYALLLIALVLFVGPLVWLLSTMMKTKAETYKVPPTIFPEQMNFEAFERLFAVQPMMWQWIQNSFAISFFVALGAVVSSSIVAYGFSRFATKYRDKLFPIVLLTLMIPPSIMMIPSYVLFAKLGWIDTWLPLIVPAWLGGAYYIFLFRQFFLTIPQELDEATYLDGGNRWTVYARVIMPLSKPIIITTIIFAFVNSWLDFLGPFLYIKNNELFTLSVGLQLLIGQTSQDFPALAAGAFISIIPIGLLYFFAQRYIVEGVVLTGSKG
>NZ_CP016808.1|WP_099521090.1|6840958_6842323_-|sugar-ABC-transporter-substrate-binding-protein
MKTKSKWKLSVGTTLLATSILVTGCGGGNAGGQTNTANPASAGGNSSAPAEEAVTITYSQWGTAEELQRTQELLNKFMTANPSITVKLEGKDWGSYWDGLTANAAGGTLPDVFKTSYAYVEKYAELGIFKELDGLLEGNKFDLNNVDPSLLGLHKYQGKQVSLPIDANVIVWYYNKALFSDEKTNPLKAPVPSLEPTWDEITDIATKLTFDKNGKNAGEAGFDGKNIVQWGLSISPGSTMDWFLEPELWSNGGKLVNDDGTLALDTPESIEVLQYFIDLTKNKKINTTPAQIEGLGGQVNLAITTGKVAMNPGGSWNTANYKEAGIDYGISYLPKFKTNQTVVQPAGMAISANTKHEAAAYKLLAWLAGPEGQTELAKQGYSIPANKAASDAYIETMGEANKIFLDAQQYGIVSPFTAKKTDLVWTYGEQSLKLPLAGEGDLMAAIKELTSKVN
>NZ_CP016808.1|WP_099521873.1|6839214_6840750_-|right-handed-parallel-beta-helix-repeat-containing-protein
MNKYVTAMLGMAVFTLLVIGVSGPDVSAEGAEYYVATTGNDSNAGTITAPWKTLQHAADAVPAGSTVYVRGGVYNQKLNITRSGSAAAGPILFTNYAEEVAVIDGAGLTASGAEGLVNLTDVSHVTIKGLEIRNFTSTSKNKVPIGIYVSGAGSYIGLLDNKVHAIKNTVTPTGSGLQGRDAHGIAVYGTKSPASLNHLTIDGNELYNLVLGSSESLVLNGNVDTFEVTNNLIHDNDNIGIDLIGFEGTAPNAAYDQVRGGLVKGNRVYNITSNNNPSYGKKLPNNSNAAGGIYVDGGKDSIIEQNYSYNNDIGIEIASEHKGKSTSHITVRSNIIYNNRLTGIAMGGYDKQRGSTTDSKIVNNTLYKNDTLGDGSGQLYVQFDTKNNVIKNNIMVASSTGVLIYNEYTQNAGNIVDYNLYFTAGRSSEAYWVWKNVEYDGYAAYKANSGNDSHSLFVDPKFVNASLNDFHLQATSPAINAGDTDTAIIGLLDIDGQPRVQDATVNIGADE
>NZ_CP016808.1|WP_099521089.1|6837950_6838991_-|LacI-family-DNA-binding-transcriptional-regulator
MAKLKDIADRVGVSISTVSRVMKNDANRSVSDETRKKIWETAEQLGYRTLRPAKKKKAEAKTAYRIGCVVAIPQNKYNNPYFSVILEGIEKELAASGMRLEFVYSIEKETDTEQLQALVKEHQIDGMLVVERIDPEAYRWIKANVRAVVGVDIADREVPVVSYDREAAAKEAVNHLIAQGHRHIAYIGGSEYKDDFRAEKRFLGYQSALKEAGLPIDDEWVINVKWDVALSYELTKQAFANNAQRPTAIFAASDMMAIAAMRAATERELKIPDDIAFFGVDNIEISEFTSPPLSTIHVPKLEMGMFAVKLLIDYLENQYEIAVKMVIPYRCLLRHSTSSKLTHATP
>NZ_CP016808.1|WP_099521088.1|6836931_6837837_+|AraC-family-transcriptional-regulator
MDNLAARYPLQRIAPFREWSPSVHYAQFQSLPPGAMPRRRLYDFELLYVTHGEAATHMQGQRYTLTAGQLIFLPSGVYHQNEIISTPEARFLGIHFDFFDELDVQTEADMVVYTEEAQADKFAVEACAEQLAPLSATIVYTPSLVCVQLMEQLVHEFTMRPPGYELACKAYMLQILTHLLRSSLSSSATQGSVHGDKLLEVMKQIEEAPAERWTNTSLAKRLNLSVDHMAKLFKQMAGMPPSEFVQSIRHREARRLLRESGLSIESIGESVGYPDIHYFSRIFRRHEGISPREYRKLSNIL
>NZ_CP016808.1|WP_172455670.1|6836117_6836759_-|carbohydrate-binding-family-9-like-protein
MDSAIAAIGGSYICKRLEPAKSGASSASLDWGRCEALELVDTVTGAPPRERTEVRIGWSSEQLHIRFACKDSHIVSDFTQRDEPLYEQDVVEVFIDEEGEGRRYMELEVSPHNVVFDAIIENDGSGGISSSDLKWQFSRLQTSVQSDGQGSLLYYIDIPASNFQRPFAPGLSMRINLYRIDQDVQGIREYQAWLPTRAVNFHLPQHFGKLIFN
>NZ_CP016808.1|WP_099521095.1|6849431_6849725_-|CRISPR-associated-endonuclease-Cas2
MMILVTYDVNTTTPEGRRRLRQVAKCCLNYGQRVQNSVFECIVDPLQFKQLKDQLSKEINENTDSLRYYLLGANWKKRVEHVGAKEGYDPEGILIVD
>NZ_CP016808.1|WP_099521096.1|6849737_6850766_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYITSPSSYLTREGENIIVKAEDRDPLRMPIHILESIVTVGYAGASPSLMQLCAERGVSLSFLQENGQFMASVHGKTTGNVLLRRKQYRLADGERAAIYAKRFIFAKIANSRTVLNRAIRDHGSNIASDKVNKEADFLKRYLNKVLTVPGLDDIRGIEGEAARRYFSAFNELILADKESFYLRGRNRRPPLDRVNALLSYTYTLLRLEVQSALETVGLDPAAGFLHRDRPGRPSLALDLMEELRAYMADRLVLSLINRKQIHANDFTIKENGAVLLKPDLKKELITAWQKRKREEIRHPFLDEIIPIGLLPYSQALLLARTIRGDLEEYPPFLWK
>NZ_CP016808.1|WP_099521874.1|6850789_6851494_-|CRISPR-associated-protein-Cas4
MLYQEDNLLMLSGVQHYAFCKRQWSLIHIEQQWSENVLTYEGQQMHGRADDPYFSETRGDVLISRALPLVCYSIGFYGKADVVEFHAVVSSRSGSIIGERDAIALPGREGLWRPFPVEYKRGKPKSGDWDEVQLCAQAMALEEMFGVQLTEGALYYGERGRRVSVTLTEGLRRRVYALFEEMHGLFLAGVTLPAVYSSKCKNCSLLDICMPAILSRKSKQTRGYLQHYLDKEMG
>NZ_CP016808.1|WP_056042045.1|6851527_6852442_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAIEQAELEKVGQNSALAQRYDFSIFFDVTNGNPNGDPDAGNMPRTDPETGHGIVTDVCIKRKVRNYIELTREGEEGFNIYVTEGAVLNEQQRRAYRAIRPDDADTKELKPKSQEQSRQLTRWMCDNFFDIRTFGAVMTTKVNCGQVRGPIQFTFARSIDPIFPQELTITRQAVTQEGAAKEREMGRKHIVPYGLYRMDGYISGYLAEKTGFTNNDLELLWEALLHMFEHDRSASRGQMTVRKLVAFQHETRLGNAPAHQLLERVDAIRVRDQSLPVEPIRSFKEYEITINRDDLPEGIKILEW
>NZ_CP016808.1|WP_099521097.1|6852499_6854404_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIIQALYERYEQLIRNPKSKISPMYSSMGKISFVLVISATGELLNIVDIREVDGKRRKASAINIPEQGSRSSGIKPFFLSDKPEYLLGYHAIANVANASATDTKKVVDARRKYEACVELHRDILHKVEDDGAKAILAFFSHWNIETVREHPKLQNFIDDLDKGLDCNMVFRLDEDTDGYLHEREAVKTCWIRYMESKKASSELIGQCLITGKAGEPIAQTHEIKIKGVRGAQSSGAALVSFNVDSFLSYGKKQSFNAPVSKTAAFGYTTALNHMLESDTNTITGIGDMTVVFWAGASPFGEDMERIVVNAFNQNRAIALENKATDQIMDVIKRVQQGKNLTEDMLSIKETPFYVLGLSPNMARISVRMFWQGHFGQMLENLNAHSADMDIAGLKDYRAETPPIYRIMEETRRVSIEGKKVGEGSPPGLGGAVLRAIVQGNAYPHALYMSIVNRIHVDGIVNQLRVGIIKAYWSRYARLNNNLQLEGALSVSINEESKDVGYRLGRAFAVLEKVQIESVGDNKLNATIKDKYFASAATRPLAVFTFLFKNLTNHHLKKMRSNGNGGLAVTYDILYQKILKGIYPIPTTLNQQEQGLFILGYYHQKQQLFTSKKQQAEPISIQEKDHQQSSNSEEA
>NZ_CP016808.1|WP_099521098.1|6854400_6855075_-|type-I-C-CRISPR-associated-protein-Cas5
MGYGIRLRVWGDYACFTRPEMKAERVSYDVITPSAARGILESIHWKPAIRWVIDRIHVLKPIQFETIRRNEVEGIISARNVQQAMDGKPITLAQIVTEERQQRATLMLKQVAYVIEAHFEMTDAAGAEDSPEKHYNIFLRRARKGQCFQQPYLGCREFPASFELVEVEEAIHSYAYTDVAEKDLGWMLWDIDFNNEMTPHFFRANMRCGVIEVPRSKGGGEPLL
>NZ_CP016808.1|WP_099521099.1|6855091_6857431_-|CRISPR-associated-helicase/endonuclease-Cas3
MYYAHRTKSEDKATWQLLIVHLQEVAELAGHFAAAFGARDWGKAAGILHDLGKYSKKFQLRLAGSQIAVDHATAGAQHMMEREKGDYALLLAYIIAGHHAGLPDCGTDAGEESTLFNRLKKEVEPYQEAAFNELPQQLGLNKLSLSLKPGISPEFQLAFFTRMIFSCLIDADSLNSEAFSNQKQSAKRGKIADFPKLFKKFETYIQDEFGVPKSSININRLELLTHCITRAQSPRGMKTLTLPTGSGKTLISLGYALRHAIHHSTNDDQGIRRIIYVIPYTSIIEQNARIFRKIVGSKNVLEHHSNVQHEKKQESEDGSVDLKEKLQLAEENWDYPIIVTTNVQFFESLFANKRARCRKLHNLANSIIILDEAQLMNGGLFKPSLYALQELTQNYGATVLLCTATQPEIEKLFPEPIQIEELTDDVPLRFEQFKRVRIKQVGTLSLNQIDEQLASHKQVLCVVNTRKIAREIYAQCLKRSSEDAMKEGFFHLSARMCPIHRTETLALIQERLDDKKNLPCTVISTQLIEAGVDIDFPAVYREMAGLDSIAQAAGRCNRNGKALLGYTYVFETEYGLPPGWFSATAEVTQSVLEKYKDDPLSLEAVRKYFNELYFYQSSGKVDKTDSKGILELIERRGALLEFPFREIAQRFQLIETAAKAVIVPYERCEERDEKKDNALDDGVYIDEHGHKQGGRNNSKAWKLIDQLQFAFPMTSILRQLQPYVVQLYPNEFNAFQKAGEIEQVREGVWVLKNPAKWYDDKLGVIPYSQQFHEDEIYIF
>NZ_CP016808.1|WP_099521100.1|6861193_6862012_-|radical-SAM-protein
MKSVLLYKQPKTLLNKGTGFLSGYSHSLNPYTGCAFACSYCYVRGMPVSIFRGQEWGSWVDVKLNAAELLKKELRKTKAKGPVTIFMSSSTDPYQPAEYKEQVTRSLLEAMAEEPPDFLLVQTRSPLVTRDIDLLHRLGSRVRVSMTVETDLEAIRKHFSPMAPPIQARLKALQLLKEAGVPTQAAVAPLLPSSEAFAGKLAPLVDRVCIDDYFMGDGSGGKRTMRLGLETLYAQLGAEEWNEPSAYEAVYRQFREVFGEEQLFISQAGFEP
>NZ_CP016808.1|WP_099521101.1|6862097_6862793_-|DNA-alkylation-repair-protein
MVKTIREELLMRAEADYQKFAASLIPNISNVMGVRLPELRKLAAEIAKGGWRAYLAEADDEFFEEVMLQGMVIGLVKTDMEELQRYIADFVPKIDNWSVCDSFCAGLKVTKKHEQEIWDFIQPYFASEQEYDLRFAAVMLLNFYVTEEYMERVLQRLDQIDHPAYYVKMAVAWALSICYIKQPEPTMAYLKNNALDTFTYNKALQKITESYRIDPDAKAIIRSMKRKAVKS
>NZ_CP016808.1|WP_099521102.1|6863244_6864504_-|tyrosine--tRNA-ligase
MNIMDELEWRDAINQQTDAEGLRELTNTKAVSLYCGVDPTGDSMHIGHLIPFMMLKRFQLAGHRPVILIGGATGTIGDPSGRQTERSLQTLEQVQANVDALSAQLKKLFMTDGDNQVRMVNNYDWTHKINVIEFLRDFGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLFQNEDVQLQIGGSDQWGNITSGLDLIRKKEGAEAKAFGLTIPLMLKADGTKFGKTAGGAIWLDPNKTTPFEFYQFWANTDDRDVVKYLKFFTFLSKAEIEALEEKVQTEPHKREAQKALAEEMTKFVHGEDMLEQAKRITAALFSGDIRSLTADEIEQGFKEMPTFTADGEPKNIVDWLVDLGIEPSKRQAREDITKGAISMNGEKVTELEFTVTAEHAIGGRFIIIRKGKKSYSLVKLS

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Crispr_ID: NZ_CP016808_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016808_14

6858192-6860953

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CRISPRCasFinder
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CRT
GTTTCAATCCACGCTC-TCGCACGGAGAGCGAC	PILER-CR

41 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NZ_CP016808_14

>merge|NZ_CP016808|14|6858192-6860953|CRISPRCasFinder,CRT,PILER-CR
GATTGAATCCACGCTCTCGCACGGAGAGCGACGATAGCGGCAGCGATAGTGAAAATTGAAGCGACAGTTTCAATCCACGCTCTCGCACGGAGAGCGACGCTAGCCCCCGTCAGGATGTAAATATAGATCGGCGTGTTTCAATCCACGCTCTCGCACGGAGAGCGACTAGCAGTAAATACAGCGAAATGGGTACATGCTCGTTTCAATTCACGCTCTCGCACGGAGAGCGACCAGCGACGGCAGCGGAAGCGGCGGCCAAGTTGGAGTTTCAATTCACGCTCTCGCACGGAGAGCGACGTTTCCGCAGCGTGCGCAGCGCAGCACGCCAGAGTTTCAATCCACGCTCTCGCACGGAGAGCGACAATGATGACGGCCTGCTTGCCTATACTCGTTTTATGTTTCAATCCACGCTCTCGCACGGAGAGCGACCGTATCGCTAAACATAGAAATATGGTCTAGCATGTTTCAATCCACGCTCTCGCACGGAGAGCGACATTTGGTGGGCTCGCCTAGACGGCGGCACTGGCAGCGTTTCAATCCACGCTCTCGCACGGAGAGCGACCAAACGGCCCACGCCAGTTAAGATACAGCGGCATGTTTCAATCCACGCTCTCGCACGGAGAGCGACATGCAATGGCGGAAATGGCGGCAGCTGGTGAGGTGGTTTCAATCCACGCTCTCGCACGGAGAGCGACTCCAGTATTTAACGATTCCCAAAACAAGAGGCAGGTTTCAATCCACGCTCTCGCACGGAGAGCGACGTGGGAATGATTGTTACAACATTTTTAGGATTTTATGTTTCAATCCACGCTCTCGCACGGAGAGCGACTCTACTGGCGTACAGTCGCGCAGAACCAAACCGGTTTCAATCCACGCTCTCGCACGGAGAGCGACTATACCAGGTAGATATGTAGAGATAAACGGCAATGTTTCAATCCACGCTCTCGCACGGAGAGCGACCTCTAGCCGCCGTGATATCTTCCAGCATCTTCGCGTTTCAATCCACGCTCTCGCACGGAGAGCGACAATTGACACAACTGGCTTACCGTTTATTTGCTCTGGTTTCAATCCACGCTCTCGCACGGAGAGCGACCCCACGCCTTTGTCCTGCGTATCGGAGCCGGTACCGGTTTCAATCCACGCTCTCGCACGGAGAGCGACTCTCCGAAATCCCATCAGCTTGGTAGCCAGCATGGTTTCAATCCACGCTCTCGCACGGAGAGCGACGCGAGAGCTCGACGGAACGTTGAAGTACATTGACGAGTTTCAATCCACGCTCTCGCACGGAGAGCGACAAGAGCCTGTGGAAGAGGCTCTCGTAAACGACCTGTTTCAATCCACGCTCTCGCACGGAGAGCGACCCATCCTCAATAAGCTTCTCTGCTATATCTGCCGGTTTCAATCCACGCTCTCGCACGGAGAGCGACGCGTATATTTGACGGGGTTTTCAGATAGCTTCGTTGTTTCAATCCACGCTCTCGCACGGAGAGCGACCTTCACGTCGTCCGGGTCTTCTACTCCCGTCGCGGTGTTTCAATCCACGCTCTCGCACGGAGAGCGACCAGGCGAAGACGGAGCAAGCCCGAAATGCTGCATGTTTCAATCCACGCTCTCGCACGGAGAGCGACTCGTCCACTTCTGCGCCCAAGTCATGCGCCGTATGTTTCAATCCACGCTCTCGCACGGAGAGCGACATGGTCGTGTTTGGCGTTTTTGTTCTGATAATTATGTTTCAATCCACGCTCTCGCACGGAGAGCGACAAAGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCACGTTTCAATCCACGCTCTCGCACGGAGAGCGACAAGCATAAGTTGTCAACGCAAACAAGGATTGCGCGTTTCAATCCACGCTCTCGCACGGAGAGCGACGCATAAAACGAGACAAGGGGTTGTGTTAATGTCGGTTTCAATCCACGCTCTCGCACGGAGAGCGACGAATTCTTTAGCGATTTTGGCAGACATTTCATGAGTTTCAATCCACGCTCTCGCACGGAGAGCGACCTAACATGCCTATGATAGATATATAACATCATAGGGGTTTCAATCCACGCTCTCGCACGGAGAGCGACTTTACTTTTCTTTTTCGCACCCTCTACCATGTTACGTTTCAATCCACGCTCTCGCACGGAGAGCGACCTTCATGAGCAAACGTCAAAGTGACGAATTCACTGTTTCAATCCACGCTCTCGCACGGAGAGCGACAAGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCACGTTTCAATCCACGCTCTCGCACGGAGAGCGACGAGCAGCTTGTCCCAATATTTACGACGCAGCTTAGGTTTCAATCCACGCTCTCGCACGGAGAGCGACCGTAACAGTGTTGTGCTGAAGAATGTGTTTAAATTTGTTTCAATCCACGCTCTCGCACGGAGAGCGACTCTCAGCCTCAGCCTCAGCAGAATGTTTATAATCAGTTTCAATCCACGCTCTCGCACGGAGAGCGACGGTTTCTCTTGCTAGTATTAGCCGTATTTTTCCTCGTTTCAATCCACGCTCTCGCACGGAGAGCGACCTATACGTTTCAACGCCAACAACCGCGATAGCACAGTTTCAATCCACGCTCTCGCACGGAGAGCGACACTTTTGCCCGATCCTATTACCCCTATATACTGTTGTTTCAATCCACGCTCTCGCACGGAGAGCGACCTATCATAGACAATTTAACCCATGGTAGTCAATAGTTTCAATCCACGCTCTCGCACGGAGAGCGAC

>NZ_CP016808|14|13|6858192-6860953|CRISPRCasFinder
GATTGAATCCACGCTCTCGCACGGAGAGCGAC	GATAGCGGCAGCGATAGTGAAAATTGAAGCGACA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCTAGCCCCCGTCAGGATGTAAATATAGATCGGCGT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TAGCAGTAAATACAGCGAAATGGGTACATGCTC
GTTTCAATTCACGCTCTCGCACGGAGAGCGAC	CAGCGACGGCAGCGGAAGCGGCGGCCAAGTTGGA
GTTTCAATTCACGCTCTCGCACGGAGAGCGAC	GTTTCCGCAGCGTGCGCAGCGCAGCACGCCAGA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AATGATGACGGCCTGCTTGCCTATACTCGTTTTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CGTATCGCTAAACATAGAAATATGGTCTAGCAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ATTTGGTGGGCTCGCCTAGACGGCGGCACTGGCAGC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAAACGGCCCACGCCAGTTAAGATACAGCGGCAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ATGCAATGGCGGAAATGGCGGCAGCTGGTGAGGTG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCCAGTATTTAACGATTCCCAAAACAAGAGGCAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GTGGGAATGATTGTTACAACATTTTTAGGATTTTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCTACTGGCGTACAGTCGCGCAGAACCAAACCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TATACCAGGTAGATATGTAGAGATAAACGGCAAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTCTAGCCGCCGTGATATCTTCCAGCATCTTCGC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AATTGACACAACTGGCTTACCGTTTATTTGCTCTG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCCACGCCTTTGTCCTGCGTATCGGAGCCGGTACCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCTCCGAAATCCCATCAGCTTGGTAGCCAGCATG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGAGAGCTCGACGGAACGTTGAAGTACATTGACGA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAGAGCCTGTGGAAGAGGCTCTCGTAAACGACCT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCATCCTCAATAAGCTTCTCTGCTATATCTGCCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGTATATTTGACGGGGTTTTCAGATAGCTTCGTT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTTCACGTCGTCCGGGTCTTCTACTCCCGTCGCGGT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAGGCGAAGACGGAGCAAGCCCGAAATGCTGCAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCGTCCACTTCTGCGCCCAAGTCATGCGCCGTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ATGGTCGTGTTTGGCGTTTTTGTTCTGATAATTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAAGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAGCATAAGTTGTCAACGCAAACAAGGATTGCGC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCATAAAACGAGACAAGGGGTTGTGTTAATGTCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GAATTCTTTAGCGATTTTGGCAGACATTTCATGA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTAACATGCCTATGATAGATATATAACATCATAGGG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TTTACTTTTCTTTTTCGCACCCTCTACCATGTTAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTTCATGAGCAAACGTCAAAGTGACGAATTCACT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GAGCAGCTTGTCCCAATATTTACGACGCAGCTTAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CGTAACAGTGTTGTGCTGAAGAATGTGTTTAAATTT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCTCAGCCTCAGCCTCAGCAGAATGTTTATAATCA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GGTTTCTCTTGCTAGTATTAGCCGTATTTTTCCTC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTATACGTTTCAACGCCAACAACCGCGATAGCACA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ACTTTTGCCCGATCCTATTACCCCTATATACTGTT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTATCATAGACAATTTAACCCATGGTAGTCAATA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC

>NZ_CP016808|14|10|6858192-6860953|CRT
GATTGAATCCACGCTCTCGCACGGAGAGCGAC	GATAGCGGCAGCGATAGTGAAAATTGAAGCGACA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCTAGCCCCCGTCAGGATGTAAATATAGATCGGCGT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TAGCAGTAAATACAGCGAAATGGGTACATGCTC
GTTTCAATTCACGCTCTCGCACGGAGAGCGAC	CAGCGACGGCAGCGGAAGCGGCGGCCAAGTTGGA
GTTTCAATTCACGCTCTCGCACGGAGAGCGAC	GTTTCCGCAGCGTGCGCAGCGCAGCACGCCAGA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AATGATGACGGCCTGCTTGCCTATACTCGTTTTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CGTATCGCTAAACATAGAAATATGGTCTAGCAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ATTTGGTGGGCTCGCCTAGACGGCGGCACTGGCAGC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAAACGGCCCACGCCAGTTAAGATACAGCGGCAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ATGCAATGGCGGAAATGGCGGCAGCTGGTGAGGTG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCCAGTATTTAACGATTCCCAAAACAAGAGGCAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GTGGGAATGATTGTTACAACATTTTTAGGATTTTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCTACTGGCGTACAGTCGCGCAGAACCAAACCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TATACCAGGTAGATATGTAGAGATAAACGGCAAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTCTAGCCGCCGTGATATCTTCCAGCATCTTCGC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AATTGACACAACTGGCTTACCGTTTATTTGCTCTG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCCACGCCTTTGTCCTGCGTATCGGAGCCGGTACCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCTCCGAAATCCCATCAGCTTGGTAGCCAGCATG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGAGAGCTCGACGGAACGTTGAAGTACATTGACGA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAGAGCCTGTGGAAGAGGCTCTCGTAAACGACCT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CCATCCTCAATAAGCTTCTCTGCTATATCTGCCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCGTATATTTGACGGGGTTTTCAGATAGCTTCGTT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTTCACGTCGTCCGGGTCTTCTACTCCCGTCGCGGT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CAGGCGAAGACGGAGCAAGCCCGAAATGCTGCAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCGTCCACTTCTGCGCCCAAGTCATGCGCCGTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ATGGTCGTGTTTGGCGTTTTTGTTCTGATAATTAT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAAGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAGCATAAGTTGTCAACGCAAACAAGGATTGCGC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GCATAAAACGAGACAAGGGGTTGTGTTAATGTCG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GAATTCTTTAGCGATTTTGGCAGACATTTCATGA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTAACATGCCTATGATAGATATATAACATCATAGGG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TTTACTTTTCTTTTTCGCACCCTCTACCATGTTAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTTCATGAGCAAACGTCAAAGTGACGAATTCACT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	AAGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCAC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GAGCAGCTTGTCCCAATATTTACGACGCAGCTTAG
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CGTAACAGTGTTGTGCTGAAGAATGTGTTTAAATTT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	TCTCAGCCTCAGCCTCAGCAGAATGTTTATAATCA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	GGTTTCTCTTGCTAGTATTAGCCGTATTTTTCCTC
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTATACGTTTCAACGCCAACAACCGCGATAGCACA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	ACTTTTGCCCGATCCTATTACCCCTATATACTGTT
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC	CTATCATAGACAATTTAACCCATGGTAGTCAATA
GTTTCAATCCACGCTCTCGCACGGAGAGCGAC

>NZ_CP016808|14|9|6858194-6860953|PILER-CR
TTGAATCCACGCTCTCGCACGGAGAGCGACGA	TAGCGGCAGCGATAGTGAAAATTGAAGCGACAGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGC	TAGCCCCCGTCAGGATGTAAATATAGATCGGCGTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTA	GCAGTAAATACAGCGAAATGGGTACATGCTCGT
TTCAATTCACGCTCTCGCACGGAGAGCGACCA	GCGACGGCAGCGGAAGCGGCGGCCAAGTTGGAGT
TTCAATTCACGCTCTCGCACGGAGAGCGACGT	TTCCGCAGCGTGCGCAGCGCAGCACGCCAGAGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAA	TGATGACGGCCTGCTTGCCTATACTCGTTTTATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCG	TATCGCTAAACATAGAAATATGGTCTAGCATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAT	TTGGTGGGCTCGCCTAGACGGCGGCACTGGCAGCGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCA	AACGGCCCACGCCAGTTAAGATACAGCGGCATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAT	GCAATGGCGGAAATGGCGGCAGCTGGTGAGGTGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTC	CAGTATTTAACGATTCCCAAAACAAGAGGCAGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGT	GGGAATGATTGTTACAACATTTTTAGGATTTTATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTC	TACTGGCGTACAGTCGCGCAGAACCAAACCGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTA	TACCAGGTAGATATGTAGAGATAAACGGCAATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCT	CTAGCCGCCGTGATATCTTCCAGCATCTTCGCGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAA	TTGACACAACTGGCTTACCGTTTATTTGCTCTGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCC	CACGCCTTTGTCCTGCGTATCGGAGCCGGTACCGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTC	TCCGAAATCCCATCAGCTTGGTAGCCAGCATGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGC	GAGAGCTCGACGGAACGTTGAAGTACATTGACGAGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAA	GAGCCTGTGGAAGAGGCTCTCGTAAACGACCTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCC	ATCCTCAATAAGCTTCTCTGCTATATCTGCCGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGC	GTATATTTGACGGGGTTTTCAGATAGCTTCGTTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCT	TCACGTCGTCCGGGTCTTCTACTCCCGTCGCGGTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCA	GGCGAAGACGGAGCAAGCCCGAAATGCTGCATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTC	GTCCACTTCTGCGCCCAAGTCATGCGCCGTATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAT	GGTCGTGTTTGGCGTTTTTGTTCTGATAATTATGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAA	AGCCCCCTTAAGCCGCCGCCTTTTTGAGCCCACGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAA	GCATAAGTTGTCAACGCAAACAAGGATTGCGCGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGC	ATAAAACGAGACAAGGGGTTGTGTTAATGTCGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGA	ATTCTTTAGCGATTTTGGCAGACATTTCATGAGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCT	AACATGCCTATGATAGATATATAACATCATAGGGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTT	TACTTTTCTTTTTCGCACCCTCTACCATGTTACGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCT	TCATGAGCAAACGTCAAAGTGACGAATTCACTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAA	GCCCCCTTAAGCCGCCGCCTTTTTGAGCCCACGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGA	GCAGCTTGTCCCAATATTTACGACGCAGCTTAGGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCG	TAACAGTGTTGTGCTGAAGAATGTGTTTAAATTTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACTC	TCAGCCTCAGCCTCAGCAGAATGTTTATAATCAGT
TTCAATCCACGCTCTCGCACGGAGAGCGACGG	TTTCTCTTGCTAGTATTAGCCGTATTTTTCCTCGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCT	ATACGTTTCAACGCCAACAACCGCGATAGCACAGT
TTCAATCCACGCTCTCGCACGGAGAGCGACAC	TTTTGCCCGATCCTATTACCCCTATATACTGTTGT
TTCAATCCACGCTCTCGCACGGAGAGCGACCT	ATCATAGACAATTTAACCCATGGTAGTCAATAGT
TTCAATCCACGCTCTCGCACGGAGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016808.1\|WP_099521096.1\|6849737_6850766_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP016808.1\|WP_150131618.1\|6848068_6848356_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099521108.1\|6871137_6872976_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP016808.1\|WP_099521105.1\|6867258_6868767_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378792
NZ_CP016808.1\|WP_099521093.1\|6844136_6845237_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP016808.1\|WP_099521100.1\|6861193_6862012_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP016808.1\|WP_099521101.1\|6862097_6862793_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132880
NZ_CP016808.1\|WP_099521874.1\|6850789_6851494_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP016808.1\|WP_099521106.1\|6869255_6869576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016808.1\|WP_099521109.1\|6873097_6875896_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227068
NZ_CP016808.1\|WP_099521107.1\|6869591_6871163_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381091
NZ_CP016808.1\|WP_099521099.1\|6855091_6857431_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016808.1\|WP_099521102.1\|6863244_6864504_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237360
NZ_CP016808.1\|WP_099521104.1\|6866221_6867163_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP016808.1\|WP_099521103.1\|6865291_6866203_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP016808.1\|WP_056042045.1\|6851527_6852442_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP016808.1\|WP_099521097.1\|6852499_6854404_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP016808.1\|WP_099521095.1\|6849431_6849725_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP016808.1\|WP_099521094.1\|6845894_6847889_+\|DUF4832-domain-containing-protein	unknown	unknown	gnl\|CDD\|374373
NZ_CP016808.1\|WP_099521098.1\|6854400_6855075_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782

Protein	Function_ID	Function_description	E-value
NZ_CP016808.1\|WP_099521096.1\|6849737_6850766_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	2.41297e-180
NZ_CP016808.1\|WP_099521103.1\|6865291_6866203_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.33768e-63
NZ_CP016808.1\|WP_099521108.1\|6871137_6872976_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.54178e-46
NZ_CP016808.1\|WP_099521105.1\|6867258_6868767_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	1.43938e-52
NZ_CP016808.1\|WP_099521093.1\|6844136_6845237_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.90673e-62
NZ_CP016808.1\|WP_099521100.1\|6861193_6862012_-\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.81805e-26
NZ_CP016808.1\|WP_099521101.1\|6862097_6862793_-\|DNA-alkylation-repair-protein	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.56571e-44
NZ_CP016808.1\|WP_099521874.1\|6850789_6851494_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.42602e-28
NZ_CP016808.1\|WP_099521109.1\|6873097_6875896_-\|hypothetical-protein	gnl\|CDD\|227068	COG4724, COG4724, Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism].	6.47457e-69
NZ_CP016808.1\|WP_099521107.1\|6869591_6871163_-\|response-regulator-transcription-factor	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.55956e-53
NZ_CP016808.1\|WP_099521099.1\|6855091_6857431_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.55347e-60
NZ_CP016808.1\|WP_099521102.1\|6863244_6864504_-\|tyrosine--tRNA-ligase	gnl\|CDD\|237360	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.	0
NZ_CP016808.1\|WP_099521104.1\|6866221_6867163_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	5.82056e-124
NZ_CP016808.1\|WP_056042045.1\|6851527_6852442_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.2664e-150
NZ_CP016808.1\|WP_099521097.1\|6852499_6854404_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP016808.1\|WP_099521095.1\|6849431_6849725_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.52858e-31
NZ_CP016808.1\|WP_099521094.1\|6845894_6847889_+\|DUF4832-domain-containing-protein	gnl\|CDD\|374373	pfam16116, DUF4832, Domain of unknown function (DUF4832). This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Bacteroides and Capnocytophaga species. The function of this family is unknown. Distant homology analysis suggests a possible similarity of proteins from this family to TIM barrel glycoside hydrolases and, subsequently its involvement in carbohydrate metabolism.The domain lies downstream of glycosyl hydrolases 42 suggesting that as a domain it might represent the carbohydrate-binding region of the enzyme.	7.01076e-16
NZ_CP016808.1\|WP_099521098.1\|6854400_6855075_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	7.55665e-118

>NZ_CP016808.1|WP_099521099.1|6855091_6857431_-|CRISPR-associated-helicase/endonuclease-Cas3
MYYAHRTKSEDKATWQLLIVHLQEVAELAGHFAAAFGARDWGKAAGILHDLGKYSKKFQLRLAGSQIAVDHATAGAQHMMEREKGDYALLLAYIIAGHHAGLPDCGTDAGEESTLFNRLKKEVEPYQEAAFNELPQQLGLNKLSLSLKPGISPEFQLAFFTRMIFSCLIDADSLNSEAFSNQKQSAKRGKIADFPKLFKKFETYIQDEFGVPKSSININRLELLTHCITRAQSPRGMKTLTLPTGSGKTLISLGYALRHAIHHSTNDDQGIRRIIYVIPYTSIIEQNARIFRKIVGSKNVLEHHSNVQHEKKQESEDGSVDLKEKLQLAEENWDYPIIVTTNVQFFESLFANKRARCRKLHNLANSIIILDEAQLMNGGLFKPSLYALQELTQNYGATVLLCTATQPEIEKLFPEPIQIEELTDDVPLRFEQFKRVRIKQVGTLSLNQIDEQLASHKQVLCVVNTRKIAREIYAQCLKRSSEDAMKEGFFHLSARMCPIHRTETLALIQERLDDKKNLPCTVISTQLIEAGVDIDFPAVYREMAGLDSIAQAAGRCNRNGKALLGYTYVFETEYGLPPGWFSATAEVTQSVLEKYKDDPLSLEAVRKYFNELYFYQSSGKVDKTDSKGILELIERRGALLEFPFREIAQRFQLIETAAKAVIVPYERCEERDEKKDNALDDGVYIDEHGHKQGGRNNSKAWKLIDQLQFAFPMTSILRQLQPYVVQLYPNEFNAFQKAGEIEQVREGVWVLKNPAKWYDDKLGVIPYSQQFHEDEIYIF
>NZ_CP016808.1|WP_099521098.1|6854400_6855075_-|type-I-C-CRISPR-associated-protein-Cas5
MGYGIRLRVWGDYACFTRPEMKAERVSYDVITPSAARGILESIHWKPAIRWVIDRIHVLKPIQFETIRRNEVEGIISARNVQQAMDGKPITLAQIVTEERQQRATLMLKQVAYVIEAHFEMTDAAGAEDSPEKHYNIFLRRARKGQCFQQPYLGCREFPASFELVEVEEAIHSYAYTDVAEKDLGWMLWDIDFNNEMTPHFFRANMRCGVIEVPRSKGGGEPLL
>NZ_CP016808.1|WP_099521097.1|6852499_6854404_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIIQALYERYEQLIRNPKSKISPMYSSMGKISFVLVISATGELLNIVDIREVDGKRRKASAINIPEQGSRSSGIKPFFLSDKPEYLLGYHAIANVANASATDTKKVVDARRKYEACVELHRDILHKVEDDGAKAILAFFSHWNIETVREHPKLQNFIDDLDKGLDCNMVFRLDEDTDGYLHEREAVKTCWIRYMESKKASSELIGQCLITGKAGEPIAQTHEIKIKGVRGAQSSGAALVSFNVDSFLSYGKKQSFNAPVSKTAAFGYTTALNHMLESDTNTITGIGDMTVVFWAGASPFGEDMERIVVNAFNQNRAIALENKATDQIMDVIKRVQQGKNLTEDMLSIKETPFYVLGLSPNMARISVRMFWQGHFGQMLENLNAHSADMDIAGLKDYRAETPPIYRIMEETRRVSIEGKKVGEGSPPGLGGAVLRAIVQGNAYPHALYMSIVNRIHVDGIVNQLRVGIIKAYWSRYARLNNNLQLEGALSVSINEESKDVGYRLGRAFAVLEKVQIESVGDNKLNATIKDKYFASAATRPLAVFTFLFKNLTNHHLKKMRSNGNGGLAVTYDILYQKILKGIYPIPTTLNQQEQGLFILGYYHQKQQLFTSKKQQAEPISIQEKDHQQSSNSEEA
>NZ_CP016808.1|WP_056042045.1|6851527_6852442_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAIEQAELEKVGQNSALAQRYDFSIFFDVTNGNPNGDPDAGNMPRTDPETGHGIVTDVCIKRKVRNYIELTREGEEGFNIYVTEGAVLNEQQRRAYRAIRPDDADTKELKPKSQEQSRQLTRWMCDNFFDIRTFGAVMTTKVNCGQVRGPIQFTFARSIDPIFPQELTITRQAVTQEGAAKEREMGRKHIVPYGLYRMDGYISGYLAEKTGFTNNDLELLWEALLHMFEHDRSASRGQMTVRKLVAFQHETRLGNAPAHQLLERVDAIRVRDQSLPVEPIRSFKEYEITINRDDLPEGIKILEW
>NZ_CP016808.1|WP_099521874.1|6850789_6851494_-|CRISPR-associated-protein-Cas4
MLYQEDNLLMLSGVQHYAFCKRQWSLIHIEQQWSENVLTYEGQQMHGRADDPYFSETRGDVLISRALPLVCYSIGFYGKADVVEFHAVVSSRSGSIIGERDAIALPGREGLWRPFPVEYKRGKPKSGDWDEVQLCAQAMALEEMFGVQLTEGALYYGERGRRVSVTLTEGLRRRVYALFEEMHGLFLAGVTLPAVYSSKCKNCSLLDICMPAILSRKSKQTRGYLQHYLDKEMG
>NZ_CP016808.1|WP_099521096.1|6849737_6850766_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYITSPSSYLTREGENIIVKAEDRDPLRMPIHILESIVTVGYAGASPSLMQLCAERGVSLSFLQENGQFMASVHGKTTGNVLLRRKQYRLADGERAAIYAKRFIFAKIANSRTVLNRAIRDHGSNIASDKVNKEADFLKRYLNKVLTVPGLDDIRGIEGEAARRYFSAFNELILADKESFYLRGRNRRPPLDRVNALLSYTYTLLRLEVQSALETVGLDPAAGFLHRDRPGRPSLALDLMEELRAYMADRLVLSLINRKQIHANDFTIKENGAVLLKPDLKKELITAWQKRKREEIRHPFLDEIIPIGLLPYSQALLLARTIRGDLEEYPPFLWK
>NZ_CP016808.1|WP_099521095.1|6849431_6849725_-|CRISPR-associated-endonuclease-Cas2
MMILVTYDVNTTTPEGRRRLRQVAKCCLNYGQRVQNSVFECIVDPLQFKQLKDQLSKEINENTDSLRYYLLGANWKKRVEHVGAKEGYDPEGILIVD
>NZ_CP016808.1|WP_150131618.1|6848068_6848356_-|hypothetical-protein
MKKSKLVLLGMVIILCLISAIPVSAQSVTNANSNVIAPAAYCPSCTMIGLPYPKKDYSRSDFIGATIQYNGYTYRFLEIDDSLSTSTRWWTVWYR
>NZ_CP016808.1|WP_099521094.1|6845894_6847889_+|DUF4832-domain-containing-protein
MFKAAGNKKLLVHLFLIFALIFAIFQPIGTVPGAQAATITVDGNVSDWSSINALATGTGAAQSFKMTNDGTNLYLLIQGSGLSTATGSFWLNIDNNTATGYQASGWGATGIEWLLENAGLYRYAGTGSNWSWNANTTLSSSQFFRSSSVIEVAIPLATLQISAGSTIQAGYIDNNSTTSRLPAASQTLPSYLLTSSGGSSDPGGATTVAYPLELDSPLNNPFKGWAPSAKTTGYPQQHKLVYAGVTWKELESTKGTYNFAAIEATNNFAHWNSLGVKVVLRFILDSPTGAAHRDIPDWLYNDMVALGQSPGTAYNDTTGGMGTGNNMGFSPNYSSAYLIERHKLAIEAIAARYNTNERPVAFVQIGSIGHWAEFHTWPYVGPNGEANYTGAFPPNAISNQYVQHYIDAFAGKEDKMQVLIRRSIALAKTNNKGLVMGMFNDVFGHKDSFDADWGWYTGTQNGYWDDIGQQQPAHANFWETRISGGEFYGGASGMTAALTTGSGFTETQRQTELSKPSWLGPNSPASLAVGNTLQSNMDTLKKRMGYHFVVKEISHPSAITGSTFATTIKVENKGVQHFPFGWPVEIQLRSGNTIVAKKTTTVDLRTWKTGTYTISDSIPVTGLAAGTYDIAIAIISPQTNAPGVDFANTNRLADGAYKLSSVTK
>NZ_CP016808.1|WP_099521093.1|6844136_6845237_-|Gfo/Idh/MocA-family-oxidoreductase
MGNIRMAFIGVGDMGSHHCIGFDLLPDSDVRYICDMNEANVARTVAELKNSSPVIVTDYRELLHKEDVDAVVISVPNYLHREVAVAFLEAGKHVFLEKPVAHTIEDCDAIIEAAEKSGRILQIGLVYRYSNLYRRMAKELENGRLGDVKLMWCKEFRDPFPPTEWFYDKSRSGGAIVEKDCHHFDIFNWMIQANPVRVFASGGQHVMKQGQENLITNSYSHYPAKNISDTSIVDHAFITIDYDNGSKANLGLCMYLKPRNLLGEGLEIGLIGDNGGQMVARNDKTIDIVGGEDWTKDHLDIDVTSDSIMGGHTGGQTQRIDFLKCVREGRQPFATAQVGRNALLIALAAEKSILEERYVYLEEITG
>NZ_CP016808.1|WP_099521100.1|6861193_6862012_-|radical-SAM-protein
MKSVLLYKQPKTLLNKGTGFLSGYSHSLNPYTGCAFACSYCYVRGMPVSIFRGQEWGSWVDVKLNAAELLKKELRKTKAKGPVTIFMSSSTDPYQPAEYKEQVTRSLLEAMAEEPPDFLLVQTRSPLVTRDIDLLHRLGSRVRVSMTVETDLEAIRKHFSPMAPPIQARLKALQLLKEAGVPTQAAVAPLLPSSEAFAGKLAPLVDRVCIDDYFMGDGSGGKRTMRLGLETLYAQLGAEEWNEPSAYEAVYRQFREVFGEEQLFISQAGFEP
>NZ_CP016808.1|WP_099521101.1|6862097_6862793_-|DNA-alkylation-repair-protein
MVKTIREELLMRAEADYQKFAASLIPNISNVMGVRLPELRKLAAEIAKGGWRAYLAEADDEFFEEVMLQGMVIGLVKTDMEELQRYIADFVPKIDNWSVCDSFCAGLKVTKKHEQEIWDFIQPYFASEQEYDLRFAAVMLLNFYVTEEYMERVLQRLDQIDHPAYYVKMAVAWALSICYIKQPEPTMAYLKNNALDTFTYNKALQKITESYRIDPDAKAIIRSMKRKAVKS
>NZ_CP016808.1|WP_099521102.1|6863244_6864504_-|tyrosine--tRNA-ligase
MNIMDELEWRDAINQQTDAEGLRELTNTKAVSLYCGVDPTGDSMHIGHLIPFMMLKRFQLAGHRPVILIGGATGTIGDPSGRQTERSLQTLEQVQANVDALSAQLKKLFMTDGDNQVRMVNNYDWTHKINVIEFLRDFGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLFQNEDVQLQIGGSDQWGNITSGLDLIRKKEGAEAKAFGLTIPLMLKADGTKFGKTAGGAIWLDPNKTTPFEFYQFWANTDDRDVVKYLKFFTFLSKAEIEALEEKVQTEPHKREAQKALAEEMTKFVHGEDMLEQAKRITAALFSGDIRSLTADEIEQGFKEMPTFTADGEPKNIVDWLVDLGIEPSKRQAREDITKGAISMNGEKVTELEFTVTAEHAIGGRFIIIRKGKKSYSLVKLS
>NZ_CP016808.1|WP_099521103.1|6865291_6866203_-|carbohydrate-ABC-transporter-permease
MPVKKSKRFDQISPAANFLLSLLTGVIAIACVFPFVFVVIISFTNEKSLASNGYRIIPKEWSLEAYQYIFRTGEALLRSYGVTIFVTVVGTLLSLVIITLYAYAISQKSFKYRQLFSFFAIFTMLFNGGMVPTFIVVTQLLHMKDTIWALIMPMLVNAFYILIMRTFFSTMVPTAIIESGKIDGASELQTFIRLVLPLSLPGIATIGLFNTLGYWNDWFNALLYIDSPNLVPLQSMLMRIETSMQFIMQNSTNSAISTGILQNMPQDTSRMAMVVLATGPIVLAYPFFQRYFVQGLTIGAVKE
>NZ_CP016808.1|WP_099521104.1|6866221_6867163_-|sugar-ABC-transporter-permease
MFDKLKIFSRDILRNRAMLLMVLPGALWFLLFSYLPMAGTIISFKQYRYSKDGFFASIMNSKWVGLDNFKFLFSTSDAYIITRNTVLYNAAFIILGLILAVALAIILVELKNRRLSKFFQTAMFMPYFLSWVIVGYFVFSFLSFDKGLMNKTLEWMGMERINWYSEPSKWPFILVLVNLWKGVGYSSVVYLAAIMGIDRSLYEAAMIDGAGKWKQITNITIPLLAPVISIMTLLAVGKIFYADFGLFYQVPRDSGLLYSMTNVIDTYVFRGLKVNGEIGMSTAAGLYQSFVGFLLVLLSNYIVRRKNKDNALF
>NZ_CP016808.1|WP_099521105.1|6867258_6868767_-|ABC-transporter-substrate-binding-protein
MMKQNKSWMLLLGVLLSFSLLLGACSTNGGAKETGETAESSGSGGNAGKDETVELSWYTIGTPQKDVNRVMEEVSKYTAEKIGVTIKMTQIDWGDYTQKMQIATSSGTPMDIMFTSSWAFDYVQNARKGAFYEIDDLLKEQGKGIVETLDPAFLEGSKVDGHNYGIPAKKELPALEVWRFNKTLLDKYNLSMDGIYTLESIEPLLKTIKDSEPDITPFAITKDYMPVLPYDYLISNLPMVVSLDKGDYKVVNVLETPELKAALDTMHSYYKKGYVSPEAATTNGLDDTQKSGKWFLDRAATTPFADNLWSASYGYPVVSTPASESMIFNWSVMGSMQAISANSEHPEKAMEFLNLLNTDPVLRNMIDSGIENVHYKKTADNAMENLDESKNYDMPTFSLGNVTLTYLNTGDPENKWDEYKVFNEAGKVAPTLGFNFDSTSVTTELASIQNVKGEFWSALMTGTVDPNEYLPKAIEKFKAAGLDKVIAEAQTQLDAWKAANPK
>NZ_CP016808.1|WP_099521106.1|6869255_6869576_+|hypothetical-protein
MKKIIISFLMLLIICSCSSQFDKETWLKEPEKRQDMVSSLTNKFKLKGMTENEIIDLLGEPAEKLSEPSRQFLYYIGSAGLGIKVTLLQLQLDENGKVESHDIIYK
>NZ_CP016808.1|WP_099521107.1|6869591_6871163_-|response-regulator-transcription-factor
MYRVFLVDDEPFILEGLYDAVDWAAHGLELTGKAENGRKALELLQQVPADLLITDISMPIMNGLELIRAARAIRPELKVIILSGFNDFEYLKEGMQLGIENYLLKPLNFAELTSTLAHTVKKLDETRRSSALEAEKVDILKDTILYRWLTAAIDAVQLQERAAMLDISFSGRYISTMLLRGGSEREDGFMQELRQTANASEDRLFLQNVEGDAVLVFMAEEEADCTAKAMQFALQLRQREEARPYRISIGSPQARGAQEALSYEHALRAQEYFLLLHKEEIALYEDYAARRGELLPDAELNWASYRKKVSAADTEALVAELTGDFQAIQASSAATPSRLRMLVMQMLLWLHQEMGGANTVNVIIAEHMNASFNKAAKASEWEELLAIMTSTIRGMSTMLIKEKTNPTVKLVLNDVEKFFATDLSLKQLAHKYHIHPVYLGKLFQKETGESFTEYVNKHRIEQSKLLLRTTALKVHEISRNVGYWDSGYFHKQFKKYVGVTPADYKSMLFEASSEPDDLNTWLC
>NZ_CP016808.1|WP_099521108.1|6871137_6872976_-|sensor-histidine-kinase
MKKLYIDAIKNNLFVKIMLVFAVIIVCATATLAYFTVDYMSQSVADNELEKQKMSMERVNQQLAGKVGVVQQQVQDIYRDPSFSYSLSYLLKHSFSEYMNFKMDSYYNNLGSGVDDLDFFKKMIENDVDIANMLLFSSEKQFLYMFGQSNLTKLYQTQASKSYVPDAMALESSVVSTPNPWVRRTIGQWDDKLFSVRVHINEVGTLSNVGQLLVFFQADALKTALASEGRDRRGYILILSGDGQVIFDSSDRYYGKLYPYVDKIKSVDSLAFLEEESYISMLPSSSLGYTVFGIMPKREVEAIYEPMKNAVIAASFAFIMITISIPSFVVFNFSRRTNRIIRSMRRVETGDLTIRIVDEKEDEIGQLSQGFNKMLDELSRHIDRVYVAELKQKHTEFAALQARINPHFLYNTLEVIRMRALSHGAADVSEMIYSLAVLFKSFVQQQTVVTMEEELENCRLYLELFRIRYKDRFAYFIACDPELKDRMMIKMSLQPIVENYIVHGLRSEEEDNLIKVTATLENDMVTIVAEDNGTGISKERLEQIKRSLGKYAVQEQDDSLGLRSVKERLELIYGKDGRFDIESVQGKGTKIIFSFPALRKGEMENVPRISGR
>NZ_CP016808.1|WP_099521109.1|6873097_6875896_-|hypothetical-protein
MALTGGKKAAVRKWTAVALTASMLVTMMPLAAYAGDTWPFKGESAHGSNQPSVHGYTSGQIANWSPATDPYAQKLRSKVPLQNRILPFASTQAKPTLSTNVKMMNVAGDYGNAFIENAPYTNKFAQYHFNFWQYIDYYSYWHGTASAYTPPEYYDNLAQSDWQQKWFEFGMLNIPNPTYTDAAHKNGVLSLAGVFFSNNDRGQQTYKQMIVKDGSGNFPVAQKMIEMAAYFGYDGYFMNQEELSPNVATADIPAYIEFLKVLQSGGLYVQWYDSLSTSTGANTFARTFNNNNISMLHDKVNHQAVTNSFFFDYGVGNTQITSASSYLASYNAANGTAYTIFDIGFAGLEAGRDRFSSAQGTALSSKLSSGLPRLSLATLGADFVHAGLDEDMGQSWPVSHRSENNYQWMTNVRDQLWWSGPNLNPKNTTVSAANTAADVYADNRYWPGIASVIAERSVIGSTNFYTNFNTGHGLSYYKDGAVSSNSEWSNMSLQDVPVTWQWWQDTTGNRLTVDYDYGTKYDFSATQRYQYEKLGGYKGGSSLVLNGNLNAENFLRLFKTDLSVNANSKLSITYNKPSANDASAAYIGLIFKDNPSQVVKVAIPNAGNKTNGWITQQLELGAYAGKSLAAFGLVVAPGSSAIAGYQLNVGQIRIFDGSAIKPAAPSGLAITEAFVDTGEMNIKWNMDTDYSKVKQYDIYINDVYVGGKYDEVFYIKALPSTAGTLKVVPIGADGLEGFAATLPFNLNAAASGISVNSQENGQLSVSWVNPPNAAGNTTVSLRSLNWIMTAQPIVAQQTAAAGATSVTFSNMPINGDDFLVTVTTGGGSSVSKSGHFIDKIAEPYSEQWSWNGNTLNLPMPNTRDWRYMYVYENGVAKSFPVTYISGSAGSFAKIIRGRTTKASLSFTSTAATVYIVMEDYAGNKSQPLYVRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016808_4	4.9\|708303\|29\|NZ_CP016808\|PILER-CR	708303-708331	29	NZ_AP022558	Geobacillus subterraneus strain E55-1 plasmid pGspE55-1, complete sequence	69382-69410	5	0.828
NZ_CP016808_4	4.10\|708371\|29\|NZ_CP016808\|PILER-CR	708371-708399	29	NC_019543	Aeromonas phage Aes508, complete genome	74252-74280	6	0.793
NZ_CP016808_2	2.3\|519893\|33\|NZ_CP016808\|CRISPRCasFinder,PILER-CR	519893-519925	33	NZ_KY270848	Enterococcus faecalis strain 2 plasmid pGTC2, complete sequence	51327-51359	7	0.788
NZ_CP016808_3	3.3\|644456\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	644456-644490	35	NC_029075	Achromobacter phage JWF, complete genome	8131-8165	7	0.8
NZ_CP016808_4	4.10\|708371\|29\|NZ_CP016808\|PILER-CR	708371-708399	29	NZ_MH760469	Salmonella enterica strain 2016K-0796 plasmid p2016K-0796, complete sequence	135331-135359	7	0.759
NZ_CP016808_10	10.7\|5434793\|34\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	5434793-5434826	34	NZ_CP020558	Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 plasmid pPLP3, complete sequence	115248-115281	7	0.794
NZ_CP016808_11	11.2\|6127308\|34\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6127308-6127341	34	MN045230	Klebsiella phage Magnus, complete genome	52871-52904	7	0.794
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	515780-515813	7	0.794
NZ_CP016808_14	14.5\|6858489\|33\|NZ_CP016808\|CRISPRCasFinder,CRT	6858489-6858521	33	MH576962	Streptomyces phage Satis, complete genome	79852-79884	7	0.788
NZ_CP016808_14	14.5\|6858489\|33\|NZ_CP016808\|CRISPRCasFinder,CRT	6858489-6858521	33	MK620894	Streptomyces phage Kradal, complete genome	79856-79888	7	0.788
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	515780-515813	7	0.794
NZ_CP016808_14	14.46\|6858491\|33\|NZ_CP016808\|PILER-CR	6858491-6858523	33	MH576962	Streptomyces phage Satis, complete genome	79852-79884	7	0.788
NZ_CP016808_14	14.46\|6858491\|33\|NZ_CP016808\|PILER-CR	6858491-6858523	33	MK620894	Streptomyces phage Kradal, complete genome	79856-79888	7	0.788
NZ_CP016808_4	4.10\|708371\|29\|NZ_CP016808\|PILER-CR	708371-708399	29	MT773557	Myoviridae sp. isolate BML_S_1 genomic sequence	61703-61731	8	0.724
NZ_CP016808_5	5.6\|718894\|34\|NZ_CP016808\|CRISPRCasFinder,CRT,PILER-CR	718894-718927	34	JQ680357	Unidentified phage clone 2011_scaffold13 genomic sequence	9977-10010	8	0.765
NZ_CP016808_5	5.7\|718961\|34\|NZ_CP016808\|CRISPRCasFinder,CRT,PILER-CR	718961-718994	34	JQ680357	Unidentified phage clone 2011_scaffold13 genomic sequence	9977-10010	8	0.765
NZ_CP016808_13	13.8\|6849039\|34\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6849039-6849072	34	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	74861-74894	8	0.765
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	86506-86539	8	0.765
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	53386-53419	8	0.765
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	86506-86539	8	0.765
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	53386-53419	8	0.765
NZ_CP016808_4	4.1\|708164\|35\|NZ_CP016808\|CRISPRCasFinder	708164-708198	35	NZ_CP027230	Capnocytophaga sp. oral taxon 878 strain F0545 plasmid unnamed1, complete sequence	2228-2262	9	0.743
NZ_CP016808_4	4.4\|708370\|33\|NZ_CP016808\|CRISPRCasFinder	708370-708402	33	NC_019543	Aeromonas phage Aes508, complete genome	74249-74281	9	0.727
NZ_CP016808_13	13.7\|6848974\|33\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848974-6849006	33	MN855777	Bacteriophage sp. isolate 33, complete genome	8458-8490	9	0.727
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	MH015258	Ruegeria phage vB_RpoS-V16, complete genome	29254-29287	9	0.735
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NC_019519	Agrobacterium phage 7-7-1, complete genome	16905-16938	9	0.735
NZ_CP016808_14	14.21\|6859553\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6859553-6859586	34	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1335571-1335604	9	0.735
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	MH015258	Ruegeria phage vB_RpoS-V16, complete genome	29254-29287	9	0.735
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NC_019519	Agrobacterium phage 7-7-1, complete genome	16905-16938	9	0.735
NZ_CP016808_14	14.62\|6859555\|34\|NZ_CP016808\|PILER-CR	6859555-6859588	34	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1335571-1335604	9	0.735
NZ_CP016808_4	4.4\|708370\|33\|NZ_CP016808\|CRISPRCasFinder	708370-708402	33	NZ_MH760469	Salmonella enterica strain 2016K-0796 plasmid p2016K-0796, complete sequence	135330-135362	10	0.697
NZ_CP016808_10	10.10\|5434992\|34\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	5434992-5435025	34	NZ_CP017242	Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence	381264-381297	10	0.706
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_KU525621	Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence	63648-63682	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NC_014332	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence	64355-64389	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NC_012577	Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence	62300-62334	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP015778	Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence	63891-63925	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP018905	Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence	64209-64243	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP023003	Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence	94092-94126	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_AP019733	Bacillus anthracis strain PCr plasmid PCr-pXO2	5109-5143	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_AP018445	Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence	63864-63898	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP029325	Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence	52150-52184	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NC_012655	Bacillus anthracis str. A0248 plasmid pXO2, complete sequence	64934-64968	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NC_007323	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence	63891-63925	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP010854	Bacillus anthracis strain A1144 plasmid pXO2, complete sequence	64039-64073	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP007617	Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence	39447-39481	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP008848	Bacillus anthracis strain HYU01 plasmid pX02, complete sequence	63775-63809	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP006744	Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence	63807-63841	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_AP014835	Bacillus anthracis strain Shikan-NIID plasmid pXO2	63877-63911	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP029807	Bacillus anthracis strain London_499 plasmid pX02, complete sequence	64016-64050	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NC_002146	Bacillus anthracis plasmid pXO2, complete sequence	64362-64396	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NC_017727	Bacillus anthracis str. H9401 plasmid BAP2, complete sequence	63870-63904	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009314	Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence	70712-70746	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP014178	Bacillus anthracis strain Stendal plasmid pXO2, complete sequence	63891-63925	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009475	Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence	86373-86407	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009900	Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence	48905-48939	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009339	Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence	83148-83182	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009695	Bacillus anthracis strain RA3 plasmid pXO2, complete sequence	39921-39955	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009462	Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence	91472-91506	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009698	Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence	61056-61090	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009542	Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence	65474-65508	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP010320	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence	36649-36683	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009329	Bacillus anthracis strain K3 plasmid 2, complete sequence	3334-3368	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009326	Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence	65430-65464	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP009979	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence	9583-9617	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP001972	Bacillus anthracis str. A16 plasmid pXO2, complete sequence	63885-63919	10	0.714
NZ_CP016808_13	13.1\|6848575\|35\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	6848575-6848609	35	NZ_CP047133	Bacillus anthracis str. BF1 plasmid pXO2, complete sequence	63794-63828	10	0.714
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NZ_AP022333	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence	63671-63704	10	0.706
NZ_CP016808_14	14.18\|6859353\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6859353-6859386	34	MH271305	Gordonia phage Morrissey, complete genome	36498-36531	10	0.706
NZ_CP016808_14	14.34\|6860419\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6860419-6860452	34	MH616689	Microviridae sp. isolate ctba203, complete genome	570-603	10	0.706
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NZ_AP022333	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence	63671-63704	10	0.706
NZ_CP016808_14	14.59\|6859355\|34\|NZ_CP016808\|PILER-CR	6859355-6859388	34	MH271305	Gordonia phage Morrissey, complete genome	36498-36531	10	0.706
NZ_CP016808_14	14.75\|6860421\|34\|NZ_CP016808\|PILER-CR	6860421-6860454	34	MH616689	Microviridae sp. isolate ctba203, complete genome	570-603	10	0.706
NZ_CP016808_4	4.5\|708163\|37\|NZ_CP016808\|CRT	708163-708199	37	NZ_CP027230	Capnocytophaga sp. oral taxon 878 strain F0545 plasmid unnamed1, complete sequence	2227-2263	11	0.703
NZ_CP016808_5	5.2\|718623\|35\|NZ_CP016808\|CRISPRCasFinder,CRT	718623-718657	35	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	108028-108062	11	0.686
NZ_CP016808_5	5.6\|718894\|34\|NZ_CP016808\|CRISPRCasFinder,CRT,PILER-CR	718894-718927	34	MH617769	Siphoviridae sp. isolate ctjc_2, complete genome	33147-33180	11	0.676
NZ_CP016808_5	5.7\|718961\|34\|NZ_CP016808\|CRISPRCasFinder,CRT,PILER-CR	718961-718994	34	MH617769	Siphoviridae sp. isolate ctjc_2, complete genome	33147-33180	11	0.676
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	428004-428037	11	0.676
NZ_CP016808_14	14.4\|6858423\|34\|NZ_CP016808\|CRISPRCasFinder,CRT	6858423-6858456	34	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	396871-396904	11	0.676
NZ_CP016808_14	14.37\|6860620\|35\|NZ_CP016808\|CRISPRCasFinder,CRT	6860620-6860654	35	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	199380-199414	11	0.686
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	428004-428037	11	0.676
NZ_CP016808_14	14.45\|6858425\|34\|NZ_CP016808\|PILER-CR	6858425-6858458	34	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	396871-396904	11	0.676
NZ_CP016808_14	14.78\|6860622\|35\|NZ_CP016808\|PILER-CR	6860622-6860656	35	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	199380-199414	11	0.686
NZ_CP016808_10	10.9\|5434926\|34\|NZ_CP016808\|PILER-CR,CRISPRCasFinder,CRT	5434926-5434959	34	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	904450-904483	12	0.647

1. spacer 4.9|708303|29|NZ_CP016808|PILER-CR matches to NZ_AP022558 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-1, complete sequence) position: , mismatch: 5, identity: 0.828

caaccagcagctaaccagcagct-aaccac	CRISPR spacer
gaaccagcagcgaaccagcagctcgaaca-	Protospacer
 ********** *********** .* **

2. spacer 4.10|708371|29|NZ_CP016808|PILER-CR matches to NC_019543 (Aeromonas phage Aes508, complete genome) position: , mismatch: 6, identity: 0.793

acggctggatgacagcacaagatttttaa	CRISPR spacer
acggctggataacaacacaagatgctgca	Protospacer
**********.***.******** .*  *

3. spacer 2.3|519893|33|NZ_CP016808|CRISPRCasFinder,PILER-CR matches to NZ_KY270848 (Enterococcus faecalis strain 2 plasmid pGTC2, complete sequence) position: , mismatch: 7, identity: 0.788

gatctacgcaagcaaaccgaggag-ttctacaaa	CRISPR spacer
gatatacgcaagcaaacccaggagatagtatca-	Protospacer
*** ************** ***** *  **. *

4. spacer 3.3|644456|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_029075 (Achromobacter phage JWF, complete genome) position: , mismatch: 7, identity: 0.8

atatcc-tcgctggctccggcagtcttgccaagctc	CRISPR spacer
-catctagcgccggctccggcattcttgccaagctg	Protospacer
 .***.  ***.********** ************

5. spacer 4.10|708371|29|NZ_CP016808|PILER-CR matches to NZ_MH760469 (Salmonella enterica strain 2016K-0796 plasmid p2016K-0796, complete sequence) position: , mismatch: 7, identity: 0.759

acggctggatgacagcacaagatttttaa	CRISPR spacer
tgcgctggcttacagcacaagatttttgg	Protospacer
   ***** * ****************..

6. spacer 10.7|5434793|34|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020558 (Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 plasmid pPLP3, complete sequence) position: , mismatch: 7, identity: 0.794

cgatcttaataaaagcaaacagattgtcgatagc	CRISPR spacer
cattcttaataaaagcatacagattttcgaaaaa	Protospacer
*. ************** ******* **** *.

7. spacer 11.2|6127308|34|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to MN045230 (Klebsiella phage Magnus, complete genome) position: , mismatch: 7, identity: 0.794

cttcgaagca-tggtatgaaaagttgttctcaatt	CRISPR spacer
-attgaggtattgttatgaaaagtttttctcaatt	Protospacer
  *.**.*.* ** *********** *********

8. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.794

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cggcgctggcagcggaagcggcggccgggtcgta	Protospacer
*.*** .*******************..**.* *

9. spacer 14.5|6858489|33|NZ_CP016808|CRISPRCasFinder,CRT matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 7, identity: 0.788

--gtttccgcagcgtgcgcagcgcagcacgccaga	CRISPR spacer
cggcgtcgg--gcgcgcgcggcgcagcacgccaga	Protospacer
  *. ** *  ***.****.***************

10. spacer 14.5|6858489|33|NZ_CP016808|CRISPRCasFinder,CRT matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 7, identity: 0.788

--gtttccgcagcgtgcgcagcgcagcacgccaga	CRISPR spacer
cggcgtcgg--gcgcgcgcggcgcagcacgccaga	Protospacer
  *. ** *  ***.****.***************

11. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.794

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cggcgctggcagcggaagcggcggccgggtcgta	Protospacer
*.*** .*******************..**.* *

12. spacer 14.46|6858491|33|NZ_CP016808|PILER-CR matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 7, identity: 0.788

--gtttccgcagcgtgcgcagcgcagcacgccaga	CRISPR spacer
cggcgtcgg--gcgcgcgcggcgcagcacgccaga	Protospacer
  *. ** *  ***.****.***************

13. spacer 14.46|6858491|33|NZ_CP016808|PILER-CR matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 7, identity: 0.788

--gtttccgcagcgtgcgcagcgcagcacgccaga	CRISPR spacer
cggcgtcgg--gcgcgcgcggcgcagcacgccaga	Protospacer
  *. ** *  ***.****.***************

14. spacer 4.10|708371|29|NZ_CP016808|PILER-CR matches to MT773557 (Myoviridae sp. isolate BML_S_1 genomic sequence) position: , mismatch: 8, identity: 0.724

acggctggatgacagcacaagatttttaa	CRISPR spacer
gccatctaatgacagcactagatttttaa	Protospacer
.* ... .********** **********

15. spacer 5.6|718894|34|NZ_CP016808|CRISPRCasFinder,CRT,PILER-CR matches to JQ680357 (Unidentified phage clone 2011_scaffold13 genomic sequence) position: , mismatch: 8, identity: 0.765

actctccgcaagttccgcattgcttttcaatcag--	CRISPR spacer
gatttccgcaagttcctcattggttttc--ttagtg	Protospacer
. *.************ ***** *****  *.**

16. spacer 5.7|718961|34|NZ_CP016808|CRISPRCasFinder,CRT,PILER-CR matches to JQ680357 (Unidentified phage clone 2011_scaffold13 genomic sequence) position: , mismatch: 8, identity: 0.765

actctccgcaagttccgcattgcttttcaatcag--	CRISPR spacer
gatttccgcaagttcctcattggttttc--ttagtg	Protospacer
. *.************ ***** *****  *.**

17. spacer 13.8|6849039|34|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 8, identity: 0.765

gcaagcataaatgtgacgcgcaaaatgattgcac	CRISPR spacer
ggtcgcgcaaatgtgatgcgcaacatgattgctc	Protospacer
*   **..********.****** ******** *

18. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.765

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cggcggcggcggcggaagcggcggccaagaccat	Protospacer
*.***.****.****************** . .

19. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.765

cagcgacggcagcggaagcggcggc--caagttgga	CRISPR spacer
cagcggcggcagcggcagcggcggcgaccggccg--	Protospacer
*****.********* *********  * .*..*

20. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.765

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cggcggcggcggcggaagcggcggccaagaccat	Protospacer
*.***.****.****************** . .

21. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.765

cagcgacggcagcggaagcggcggc--caagttgga	CRISPR spacer
cagcggcggcagcggcagcggcggcgaccggccg--	Protospacer
*****.********* *********  * .*..*

22. spacer 4.1|708164|35|NZ_CP016808|CRISPRCasFinder matches to NZ_CP027230 (Capnocytophaga sp. oral taxon 878 strain F0545 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

gaagacgaacatggcaatgaaagtgaatgttgatg	CRISPR spacer
aaagacgaatatggcaatgagagtgaagtaaaaag	Protospacer
.********.**********.******    .* *

23. spacer 4.4|708370|33|NZ_CP016808|CRISPRCasFinder matches to NC_019543 (Aeromonas phage Aes508, complete genome) position: , mismatch: 9, identity: 0.727

tacggctggatgacagcacaagatttttaaagg	CRISPR spacer
tacggctggataacaacacaagatgctgcatat	Protospacer
***********.***.******** .*  * .

24. spacer 13.7|6848974|33|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to MN855777 (Bacteriophage sp. isolate 33, complete genome) position: , mismatch: 9, identity: 0.727

caagatgcggcgtgaatatcaaaccaccgctgg	CRISPR spacer
caagctgcggcgtcaatatcaaacggaccataa	Protospacer
**** ******** ********** . *  *..

25. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to MH015258 (Ruegeria phage vB_RpoS-V16, complete genome) position: , mismatch: 9, identity: 0.735

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
gttcaacggcggcgcaagcggcggccaaggcggc	Protospacer
   *.*****.*** ************** .**

26. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NC_019519 (Agrobacterium phage 7-7-1, complete genome) position: , mismatch: 9, identity: 0.735

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cagcgacggcagcgggagcgccgggaacctgcgg	Protospacer
***************.**** ***  *  *  *.

27. spacer 14.21|6859553|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.735

ccatcctcaataagcttctctgctatatctgccg	CRISPR spacer
tcatcctcaataagcttctctgcgatcacaaagc	Protospacer
.********************** **  * .

28. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to MH015258 (Ruegeria phage vB_RpoS-V16, complete genome) position: , mismatch: 9, identity: 0.735

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
gttcaacggcggcgcaagcggcggccaaggcggc	Protospacer
   *.*****.*** ************** .**

29. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NC_019519 (Agrobacterium phage 7-7-1, complete genome) position: , mismatch: 9, identity: 0.735

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cagcgacggcagcgggagcgccgggaacctgcgg	Protospacer
***************.**** ***  *  *  *.

30. spacer 14.62|6859555|34|NZ_CP016808|PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.735

ccatcctcaataagcttctctgctatatctgccg	CRISPR spacer
tcatcctcaataagcttctctgcgatcacaaagc	Protospacer
.********************** **  * .

31. spacer 4.4|708370|33|NZ_CP016808|CRISPRCasFinder matches to NZ_MH760469 (Salmonella enterica strain 2016K-0796 plasmid p2016K-0796, complete sequence) position: , mismatch: 10, identity: 0.697

tacggctggatgacagcacaagatttttaaagg	CRISPR spacer
ttgcgctggcttacagcacaagatttttggttt	Protospacer
*   ***** * ****************..

32. spacer 10.10|5434992|34|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 10, identity: 0.706

aggacttatcggaacgccccaacaagccgactta	CRISPR spacer
ggcgaggctcgcaacgccccaaccagccgacttg	Protospacer
.* .    *** *********** *********.

33. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU525621 (Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

34. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_014332 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

35. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_012577 (Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

36. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015778 (Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

37. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018905 (Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

38. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023003 (Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

39. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019733 (Bacillus anthracis strain PCr plasmid PCr-pXO2) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

40. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018445 (Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

41. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029325 (Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

42. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_012655 (Bacillus anthracis str. A0248 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

43. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_007323 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

44. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010854 (Bacillus anthracis strain A1144 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

45. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007617 (Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

46. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008848 (Bacillus anthracis strain HYU01 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

47. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006744 (Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

48. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014835 (Bacillus anthracis strain Shikan-NIID plasmid pXO2) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

49. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029807 (Bacillus anthracis strain London_499 plasmid pX02, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

50. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_002146 (Bacillus anthracis plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

51. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NC_017727 (Bacillus anthracis str. H9401 plasmid BAP2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

52. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009314 (Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

53. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014178 (Bacillus anthracis strain Stendal plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

54. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009475 (Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

55. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009900 (Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

56. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009339 (Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

57. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009695 (Bacillus anthracis strain RA3 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

58. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009462 (Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

59. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009698 (Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

60. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009542 (Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

61. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010320 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

62. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009329 (Bacillus anthracis strain K3 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

63. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009326 (Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

64. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009979 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

65. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP001972 (Bacillus anthracis str. A16 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

66. spacer 13.1|6848575|35|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047133 (Bacillus anthracis str. BF1 plasmid pXO2, complete sequence) position: , mismatch: 10, identity: 0.714

gcatgctcgcagaagatttagagtttaggttacgt	CRISPR spacer
aaaaaattacaaaagatttagagttaaggttacgg	Protospacer
. * . *..**.************* ********

67. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 10, identity: 0.706

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cggcggcggcagcggcagcggcggccgcgacttt	Protospacer
*.***.********* **********. * .

68. spacer 14.18|6859353|34|NZ_CP016808|CRISPRCasFinder,CRT matches to MH271305 (Gordonia phage Morrissey, complete genome) position: , mismatch: 10, identity: 0.706

tctccgaaatcccatcagcttggtagccagcatg	CRISPR spacer
gtccgggaatcccaccagcttggtggccagcgac	Protospacer
 ..* *.*******.*********.******.

69. spacer 14.34|6860419|34|NZ_CP016808|CRISPRCasFinder,CRT matches to MH616689 (Microviridae sp. isolate ctba203, complete genome) position: , mismatch: 10, identity: 0.706

aagcccccttaagccgccgcctttttgagcccac	CRISPR spacer
agggatgtctacgccgccacctttttgagcccag	Protospacer
*.*  . ..** ******.**************

70. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 10, identity: 0.706

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
cggcggcggcagcggcagcggcggccgcgacttt	Protospacer
*.***.********* **********. * .

71. spacer 14.59|6859355|34|NZ_CP016808|PILER-CR matches to MH271305 (Gordonia phage Morrissey, complete genome) position: , mismatch: 10, identity: 0.706

tctccgaaatcccatcagcttggtagccagcatg	CRISPR spacer
gtccgggaatcccaccagcttggtggccagcgac	Protospacer
 ..* *.*******.*********.******.

72. spacer 14.75|6860421|34|NZ_CP016808|PILER-CR matches to MH616689 (Microviridae sp. isolate ctba203, complete genome) position: , mismatch: 10, identity: 0.706

aagcccccttaagccgccgcctttttgagcccac	CRISPR spacer
agggatgtctacgccgccacctttttgagcccag	Protospacer
*.*  . ..** ******.**************

73. spacer 4.5|708163|37|NZ_CP016808|CRT matches to NZ_CP027230 (Capnocytophaga sp. oral taxon 878 strain F0545 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

tgaagacgaacatggcaatgaaagtgaatgttgatgg	CRISPR spacer
aaaagacgaatatggcaatgagagtgaagtaaaaaga	Protospacer
 .********.**********.******    .* *.

74. spacer 5.2|718623|35|NZ_CP016808|CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.686

gaacggatggaaagcactctgcaaagagctaaagc	CRISPR spacer
ggcatccgggaaagcactctggaaagaggtaaaaa	Protospacer
*.      ************* ****** ****.

75. spacer 5.6|718894|34|NZ_CP016808|CRISPRCasFinder,CRT,PILER-CR matches to MH617769 (Siphoviridae sp. isolate ctjc_2, complete genome) position: , mismatch: 11, identity: 0.676

actctccgcaagttccgcattgcttttcaatcag	CRISPR spacer
atctaaaacaaggtccgtattgcttttcaatcga	Protospacer
*...   .**** ****.**************..

76. spacer 5.7|718961|34|NZ_CP016808|CRISPRCasFinder,CRT,PILER-CR matches to MH617769 (Siphoviridae sp. isolate ctjc_2, complete genome) position: , mismatch: 11, identity: 0.676

actctccgcaagttccgcattgcttttcaatcag	CRISPR spacer
atctaaaacaaggtccgtattgcttttcaatcga	Protospacer
*...   .**** ****.**************..

77. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 11, identity: 0.676

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
gagcgagggcagcggaagcggccgcgtcgccaac	Protospacer
 ***** *************** **   *....

78. spacer 14.4|6858423|34|NZ_CP016808|CRISPRCasFinder,CRT matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 11, identity: 0.676

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
gagcgagggcagcggaagcggccgcgtcgccaac	Protospacer
 ***** *************** **   *....

79. spacer 14.37|6860620|35|NZ_CP016808|CRISPRCasFinder,CRT matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 11, identity: 0.686

tctcagcctcagcctcagcagaatgtttataatca	CRISPR spacer
cctcagcctcagcctcagcaggaggtcgcctccta	Protospacer
.********************.* **.  .  ..*

80. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 11, identity: 0.676

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
gagcgagggcagcggaagcggccgcgtcgccaac	Protospacer
 ***** *************** **   *....

81. spacer 14.45|6858425|34|NZ_CP016808|PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 11, identity: 0.676

cagcgacggcagcggaagcggcggccaagttgga	CRISPR spacer
gagcgagggcagcggaagcggccgcgtcgccaac	Protospacer
 ***** *************** **   *....

82. spacer 14.78|6860622|35|NZ_CP016808|PILER-CR matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 11, identity: 0.686

tctcagcctcagcctcagcagaatgtttataatca	CRISPR spacer
cctcagcctcagcctcagcaggaggtcgcctccta	Protospacer
.********************.* **.  .  ..*

83. spacer 10.9|5434926|34|NZ_CP016808|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

cgcattggcatcatagagcagcacgccagaatcc	CRISPR spacer
gaagaccatatcatcgagcagcacgccggaatcg	Protospacer
 . . . ..***** ************.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

362662 : 374212

Bacillus_phage(44.44%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099516720.1\|362662_363403_-	TerC family protein	S5MAL1	Bacillus_phage	4.1e-57	52.9
WP_099516721.1\|363421_364792_-	TerD family protein	NA	NA	NA	NA
WP_099516722.1\|364788_365367_-	TerD family protein	K4JRX3	Caulobacter_phage	5.1e-31	38.5
WP_099516723.1\|365507_366083_-	TerD family protein	K4JRX3	Caulobacter_phage	8.1e-29	37.9
WP_099516724.1\|366119_366722_-	TerD family protein	K4JRX3	Caulobacter_phage	7.9e-27	37.1
WP_099516725.1\|366892_367660_-	VWA domain-containing protein	K4JSK2	Caulobacter_phage	3.5e-19	31.9
WP_099516726.1\|367808_369638_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.1e-46	27.5
WP_099516727.1\|369630_371376_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.0e-42	28.7
WP_099516728.1\|371517_372276_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	3.4e-43	55.8
WP_099516729.1\|372443_373310_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_099521395.1\|373306_374212_-\|protease	FtsH protease activity modulator HflK	A0A2K9KZA2	Tupanvirus	2.1e-07	27.2

DBSCAN-SWA_2

887231 : 897673

Prochlorococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099517074.1\|887231_888782_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.2e-68	49.8
WP_099517075.1\|888851_889478_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-28	40.4
WP_099517076.1\|889477_890521_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-72	47.6
WP_099517077.1\|890644_892123_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.4e-53	33.7
WP_099517078.1\|892107_894351_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	42.8
WP_099517079.1\|894328_895024_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_056030616.1\|895027_895270_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A1D7SRI3	Cyanophage	9.6e-08	37.7
WP_099517080.1\|895461_896361_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.6e-39	33.9
WP_056030629.1\|896377_897673_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.2e-18	31.1

DBSCAN-SWA_3

3081209 : 3091022

Anoxybacillus_phage(11.11%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172455480.1\|3081209_3081518_-	helix-turn-helix transcriptional regulator	A0A2P1JU09	Anoxybacillus_phage	3.0e-06	36.3
WP_099518487.1\|3081682_3081910_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099518488.1\|3081960_3082716_+	phage antirepressor KilAC domain-containing protein	Q6J1W3	Lactobacillus_phage	4.6e-48	45.9
WP_099518489.1\|3082737_3082944_+	DNA-binding protein	NA	NA	NA	NA
WP_099518490.1\|3082940_3083135_+	hypothetical protein	NA	NA	NA	NA
WP_099518491.1\|3083136_3083328_+	hypothetical protein	NA	NA	NA	NA
WP_099518492.1\|3083451_3083817_+	hypothetical protein	NA	NA	NA	NA
WP_172455481.1\|3083813_3083984_+	hypothetical protein	NA	NA	NA	NA
WP_099518493.1\|3083980_3084226_+	hypothetical protein	NA	NA	NA	NA
WP_099518494.1\|3084371_3085004_+	ERF family protein	A0A1J0MFT8	Staphylococcus_phage	3.9e-24	32.9
WP_172455716.1\|3085051_3085804_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0A7RVR3	Clostridium_phage	2.3e-52	42.5
WP_099518496.1\|3085804_3086128_+	HNH endonuclease	A0A1U9WQN8	Geobacillus_phage	8.3e-23	50.5
WP_099518497.1\|3086253_3086907_+	hypothetical protein	A0A2H4JB05	uncultured_Caudovirales_phage	4.6e-28	35.8
WP_099518498.1\|3086987_3087404_+	hypothetical protein	NA	NA	NA	NA
WP_099518499.1\|3087427_3087718_+	hypothetical protein	NA	NA	NA	NA
WP_099518500.1\|3087745_3088186_+	ASCH domain-containing protein	A0A068CCC0	Rhizobium_phage	7.9e-08	29.5
WP_099518502.1\|3088443_3088746_+	hypothetical protein	NA	NA	NA	NA
WP_099518503.1\|3088781_3089063_+	hypothetical protein	NA	NA	NA	NA
WP_099518504.1\|3089319_3089790_+	hypothetical protein	A8ASP1	Listeria_phage	1.2e-06	34.7
WP_099518505.1\|3089782_3090538_+	hypothetical protein	NA	NA	NA	NA
WP_099518506.1\|3090534_3090849_+	hypothetical protein	NA	NA	NA	NA
WP_172455482.1\|3090845_3091022_+	hypothetical protein	A0A1B1P7W9	Bacillus_phage	7.0e-08	50.8

DBSCAN-SWA_4

3466035 : 3483846

Brevibacillus_phage(46.67%)

holin,plate,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099518763.1\|3466035_3467331_+	homocysteine synthase	A0A0B5JD48	Pandoravirus	7.2e-17	25.6
WP_099518764.1\|3467334_3467814_+	GAF domain-containing protein	NA	NA	NA	NA
WP_056043730.1\|3467897_3468308_-	ImmA/IrrE family metallo-endopeptidase	A0A1C8E988	Bacillus_phage	2.5e-16	41.4
WP_099518765.1\|3468316_3468745_-	helix-turn-helix domain-containing protein	A0A0U4KKM4	Exiguobacterium_phage	1.8e-12	37.7
WP_099521620.1\|3469063_3469663_+	RNA polymerase subunit sigma-24	NA	NA	NA	NA
WP_099518766.1\|3469936_3470125_+	hypothetical protein	NA	NA	NA	NA
WP_099518767.1\|3470128_3471445_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	8.4e-114	48.6
WP_046229141.1\|3471446_3471911_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	1.7e-45	60.3
WP_056043746.1\|3471954_3472377_+\|portal	phage portal protein	X5JAB6	Clostridium_phage	6.8e-25	43.2
WP_099518768.1\|3472613_3475094_+	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	5.5e-74	31.8
WP_099518769.1\|3475093_3475777_+	LysM peptidoglycan-binding domain-containing protein	S5MUH0	Brevibacillus_phage	9.3e-48	45.0
WP_099518770.1\|3475781_3476750_+	hypothetical protein	S5MNC9	Brevibacillus_phage	2.8e-98	55.0
WP_046229146.1\|3476746_3477022_+	DUF2577 domain-containing protein	A0A0K2CNS8	Brevibacillus_phage	1.2e-14	42.4
WP_099518771.1\|3477018_3477420_+	DUF2634 domain-containing protein	A0A0A7RTH1	Clostridium_phage	1.1e-21	46.2
WP_099518772.1\|3477412_3478492_+\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	1.5e-92	47.3
WP_099518773.1\|3478484_3479069_+	DUF2313 domain-containing protein	A0A0K2CNM8	Brevibacillus_phage	1.9e-33	43.9
WP_099518774.1\|3479065_3479347_+	ketopantoate hydroxymethyltransferase	NA	NA	NA	NA
WP_099518775.1\|3479354_3482078_+	hypothetical protein	R4JDZ8	Bacillus_phage	5.9e-29	34.1
WP_099518776.1\|3482090_3482429_+	hypothetical protein	NA	NA	NA	NA
WP_099518777.1\|3482647_3483175_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_099518778.1\|3483174_3483846_+	M15 family metallopeptidase	A0A127AWA8	Bacillus_phage	1.8e-40	56.9

DBSCAN-SWA_5

3585998 : 3597792

Paenibacillus_phage(50.0%)

integrase

attL 3571938:3571953|attR 3596665:3596680

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3571938:3571953	attL	NA	NA	NA	NA
WP_099518853.1\|3585998_3586961_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	2.5e-67	43.3
WP_099518854.1\|3587031_3587733_+	DUF4352 domain-containing protein	A0A0C5AEW7	Paenibacillus_phage	7.1e-19	42.4
WP_099518855.1\|3587861_3588788_+	hypothetical protein	NA	NA	NA	NA
WP_099518856.1\|3588806_3589139_+	helix-turn-helix domain-containing protein	A0A0N7GFE9	Paenibacillus_phage	4.2e-30	60.6
WP_099518857.1\|3589423_3589936_+	hypothetical protein	NA	NA	NA	NA
WP_099518858.1\|3589922_3590348_+	hypothetical protein	A0A0N9SSX1	Paenibacillus_phage	4.1e-30	60.4
WP_099518859.1\|3590347_3590653_+	hypothetical protein	NA	NA	NA	NA
WP_099518860.1\|3590979_3591165_+	hypothetical protein	NA	NA	NA	NA
WP_172455508.1\|3591145_3591406_-	helix-turn-helix transcriptional regulator	A0A1L2JY18	Aeribacillus_phage	8.7e-07	44.3
WP_099518863.1\|3592005_3592863_+	DNA (cytosine-5-)-methyltransferase	Q83VT0	Escherichia_phage	3.5e-12	30.4
WP_099518865.1\|3593108_3593303_+	hypothetical protein	NA	NA	NA	NA
WP_099518866.1\|3593299_3593650_+	hypothetical protein	NA	NA	NA	NA
WP_099518867.1\|3593657_3594188_+	DUF1273 family protein	U5J9F7	Bacillus_phage	1.0e-33	43.9
WP_099518868.1\|3594184_3594364_+	hypothetical protein	NA	NA	NA	NA
WP_099521625.1\|3594369_3595137_+	DNA replication protein	A0A0N7GFF0	Paenibacillus_phage	5.1e-71	52.7
WP_099518869.1\|3595391_3596756_+	DNA helicase	A0A2H4IZL9	uncultured_Caudovirales_phage	5.1e-114	49.3
3596665:3596680	attR	NA	NA	NA	NA
WP_099518870.1\|3596832_3597792_+	toprim domain-containing protein	A0A0N9S7Y2	Paenibacillus_phage	2.3e-68	46.0

DBSCAN-SWA_6

3602143 : 3622015

Paenibacillus_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099518879.1\|3602143_3603760_+	hypothetical protein	A0A142F1R1	Bacillus_phage	1.2e-21	27.3
WP_150131633.1\|3603910_3605584_+	DNA polymerase I	A0A0N9S7Z3	Paenibacillus_phage	7.7e-213	66.6
WP_099518880.1\|3605586_3605904_+	hypothetical protein	A0A0N9SGL0	Paenibacillus_phage	2.1e-26	53.7
WP_099518881.1\|3605900_3606986_+	hypothetical protein	A0A0N9RTM8	Paenibacillus_phage	5.8e-137	67.1
WP_099518882.1\|3607007_3607301_+	hypothetical protein	NA	NA	NA	NA
WP_099518883.1\|3607300_3607600_+	hypothetical protein	A0A0F6YQ61	Sinorhizobium_phage	3.5e-15	60.7
WP_172455720.1\|3607629_3608670_+	hypothetical protein	A0A0N9SHN6	Paenibacillus_phage	1.9e-89	58.7
WP_099518885.1\|3608670_3608919_+	hypothetical protein	NA	NA	NA	NA
WP_099518886.1\|3608905_3609436_+	crossover junction endodeoxyribonuclease RuvC	A0A0N9ST03	Paenibacillus_phage	9.2e-11	50.0
WP_099518887.1\|3609428_3610655_+	N-6 DNA methylase	A0A0N9ST12	Paenibacillus_phage	3.3e-144	63.1
WP_099518888.1\|3610648_3611020_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	7.1e-26	54.0
WP_099518889.1\|3611031_3613089_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	G3MBF2	Bacillus_virus	5.0e-254	63.3
WP_099521627.1\|3613115_3614084_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.2e-106	58.4
WP_099518890.1\|3614229_3614451_+	hypothetical protein	NA	NA	NA	NA
WP_099518891.1\|3614440_3614971_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	D2XR49	Bacillus_phage	1.4e-35	51.8
WP_099521628.1\|3615141_3615810_+	FAD-dependent thymidylate synthase	U5PWA7	Bacillus_virus	1.4e-69	61.4
WP_099518892.1\|3615806_3616139_+	hypothetical protein	NA	NA	NA	NA
WP_099518893.1\|3616140_3616749_+	hypothetical protein	NA	NA	NA	NA
WP_172455510.1\|3616853_3617186_+	hypothetical protein	A0A142F1S8	Bacillus_phage	2.6e-24	54.0
WP_099518895.1\|3617209_3618646_+	hypothetical protein	A0A0N9RTN7	Paenibacillus_phage	2.3e-32	48.3
WP_099518896.1\|3618645_3619236_+	adenylate kinase	A0A0N9SJZ0	Paenibacillus_phage	7.0e-36	47.5
WP_099518897.1\|3619245_3619647_-	hypothetical protein	NA	NA	NA	NA
WP_099518898.1\|3621029_3621431_+	RNA polymerase subunit sigma	A0A0N9RZI0	Paenibacillus_phage	4.9e-33	58.9
WP_099518899.1\|3621430_3622015_+	hypothetical protein	A0A0N7GFF4	Paenibacillus_phage	6.1e-24	48.5

DBSCAN-SWA_7

3626091 : 3649492

uncultured_Caudovirales_phage(52.94%)

holin,terminase,capsid,plate,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099518906.1\|3626091_3627852_+\|terminase	phage terminase large subunit	A0A2H4J484	uncultured_Caudovirales_phage	1.9e-241	70.1
WP_099518907.1\|3627880_3629422_+\|portal	phage portal protein	A0A2H4J180	uncultured_Caudovirales_phage	2.0e-146	52.5
WP_099518908.1\|3629414_3630206_+\|capsid	minor capsid protein	A0A2H4IZM1	uncultured_Caudovirales_phage	6.5e-53	43.5
WP_099518909.1\|3630225_3630474_+	hypothetical protein	NA	NA	NA	NA
WP_099518910.1\|3630470_3631877_+	hypothetical protein	NA	NA	NA	NA
WP_099518911.1\|3632723_3633812_+	DUF5309 family protein	A0A2H4J2M3	uncultured_Caudovirales_phage	2.6e-108	58.4
WP_099518912.1\|3633813_3634038_+	hypothetical protein	NA	NA	NA	NA
WP_099518913.1\|3634058_3634457_+	hypothetical protein	NA	NA	NA	NA
WP_099518914.1\|3634456_3634774_+	hypothetical protein	A0A2H4J6J5	uncultured_Caudovirales_phage	6.7e-17	43.0
WP_099518915.1\|3634773_3635265_+	HK97 gp10 family phage protein	A0A0N9SJT1	Paenibacillus_phage	1.1e-05	29.3
WP_099518916.1\|3635251_3635701_+	hypothetical protein	NA	NA	NA	NA
WP_099518917.1\|3635713_3636757_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4J187	uncultured_Caudovirales_phage	6.5e-85	51.3
WP_099518918.1\|3636771_3637212_+\|tail	phage tail tube protein	A0A0N7ACS0	Bacillus_phage	3.4e-27	42.8
WP_099518919.1\|3637297_3637681_+	hypothetical protein	NA	NA	NA	NA
WP_099518920.1\|3637854_3639735_+\|tail	phage tail tape measure protein	A0A1B1P7S6	Bacillus_phage	6.5e-59	46.0
WP_099518921.1\|3639734_3640409_+	LysM peptidoglycan-binding domain-containing protein	A0A2H4J2N2	uncultured_Caudovirales_phage	6.8e-43	41.1
WP_099521629.1\|3640456_3641470_+	hypothetical protein	A0A2H4IZP4	uncultured_Caudovirales_phage	2.1e-56	41.0
WP_099518922.1\|3641466_3641742_+	hypothetical protein	NA	NA	NA	NA
WP_099518923.1\|3641741_3642149_+	DUF2634 domain-containing protein	A0A2H4J6K5	uncultured_Caudovirales_phage	1.8e-19	44.6
WP_099518924.1\|3642148_3643216_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	3.4e-57	39.4
WP_099521630.1\|3643242_3643785_+	YmfQ family protein	NA	NA	NA	NA
WP_099518925.1\|3643786_3644524_+	hypothetical protein	NA	NA	NA	NA
WP_099518926.1\|3644536_3644872_+	hypothetical protein	NA	NA	NA	NA
WP_099518927.1\|3644984_3645389_+\|holin	phage holin family protein	A0A0N7GFE6	Paenibacillus_phage	3.1e-19	42.3
WP_099518928.1\|3645388_3646069_+	M15 family metallopeptidase	A0A127AWA8	Bacillus_phage	1.4e-40	58.9
WP_099518929.1\|3646175_3646928_-	excalibur calcium-binding domain-containing protein	F8WPS9	Bacillus_phage	5.3e-36	64.8
WP_099518930.1\|3647499_3647790_+	hypothetical protein	NA	NA	NA	NA
WP_099518931.1\|3647818_3649492_+	AarF/ABC1/UbiB kinase family protein	A9YVW0	Ostreococcus_tauri_virus	1.9e-54	31.8

DBSCAN-SWA_8

5069553 : 5078613

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056028903.1\|5069553_5069985_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	6.7e-20	44.0
WP_099519899.1\|5070544_5071651_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-57	39.8
WP_099519900.1\|5071666_5072356_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.7e-37	41.5
WP_172455731.1\|5072439_5073657_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.6e-114	52.9
WP_056028895.1\|5073697_5074168_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-40	56.1
WP_099519902.1\|5074426_5075206_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.4e-07	28.9
WP_046231988.1\|5075174_5075780_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.7e-13	29.8
WP_099519903.1\|5075857_5076544_+	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_099519904.1\|5076702_5077191_+	sporulation protein YtfJ	NA	NA	NA	NA
WP_099519905.1\|5077434_5078613_+	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	1.4e-06	29.6

DBSCAN-SWA_9

7143398 : 7191993

Klosneuvirus(25.0%)

holin,protease,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099521291.1\|7143398_7143734_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_056039921.1\|7143744_7144056_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_172455683.1\|7145460_7146702_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_099521292.1\|7146788_7147670_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_081418972.1\|7147662_7148601_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_099521293.1\|7148759_7149905_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_046229380.1\|7149912_7150704_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_099521896.1\|7150707_7151349_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_099521897.1\|7151435_7151960_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_172455751.1\|7151965_7152811_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_099521294.1\|7152898_7153933_-	rod shape-determining protein	NA	NA	NA	NA
WP_099521295.1\|7153975_7154665_-	DNA repair protein RadC	NA	NA	NA	NA
WP_099521296.1\|7154705_7155314_-	septum formation protein Maf	NA	NA	NA	NA
WP_056039903.1\|7155339_7155582_-	DUF4321 domain-containing protein	NA	NA	NA	NA
WP_099521297.1\|7155645_7157118_-	hypothetical protein	NA	NA	NA	NA
WP_099521298.1\|7157448_7158849_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_099521299.1\|7158856_7160230_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_099521300.1\|7160259_7162920_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.7e-169	42.1
WP_150131622.1\|7163385_7164912_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_172455752.1\|7165043_7166012_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_099521899.1\|7166072_7167374_-	glutamate-1-semialdehyde 2,1-aminomutase	A0A1V0SKB7	Klosneuvirus	4.3e-09	25.7
WP_099521303.1\|7167377_7168376_-	porphobilinogen synthase	NA	NA	NA	NA
WP_172455684.1\|7168478_7170026_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_099521900.1\|7170028_7170991_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_099521305.1\|7171003_7171648_-	bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase	NA	NA	NA	NA
WP_099521306.1\|7171664_7172477_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_099521307.1\|7172523_7173906_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_056039878.1\|7174094_7174493_-	adenosylmethionine decarboxylase	A0A222YVV4	Synechococcus_phage	5.3e-19	36.8
WP_099521901.1\|7174690_7175329_-	YjgB family protein	NA	NA	NA	NA
WP_056039874.1\|7175610_7176201_-	hypothetical protein	NA	NA	NA	NA
WP_046229401.1\|7176476_7177064_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_099521308.1\|7177060_7179595_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.5e-170	41.1
WP_099521309.1\|7179632_7181336_-\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	3.6e-16	24.1
WP_099521310.1\|7181636_7182749_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_046229405.1\|7182843_7184100_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.1e-150	65.0
WP_056039867.1\|7184123_7184708_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.1e-57	57.9
WP_056039866.1\|7184926_7186234_-	trigger factor	NA	NA	NA	NA
WP_099521311.1\|7186322_7187213_-	hypothetical protein	NA	NA	NA	NA
WP_099521312.1\|7187823_7188492_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4IZS3	uncultured_Caudovirales_phage	1.0e-30	40.0
WP_099521313.1\|7188484_7188973_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_099521314.1\|7189032_7189221_-	hypothetical protein	NA	NA	NA	NA
WP_099521315.1\|7189290_7189827_-	hypothetical protein	NA	NA	NA	NA
WP_099521316.1\|7189869_7191993_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_10

7210332 : 7224249

Bacillus_phage(33.33%)

integrase

attL 7205788:7205801|attR 7214974:7214987

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
7205788:7205801	attL	NA	NA	NA	NA
WP_099521331.1\|7210332_7210926_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0T6D2	Bacillus_phage	1.4e-31	40.9
WP_099521332.1\|7210963_7211470_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_099521333.1\|7211469_7211763_-	hypothetical protein	NA	NA	NA	NA
WP_099521334.1\|7212414_7212813_-	hypothetical protein	NA	NA	NA	NA
WP_099521335.1\|7213019_7213232_-	hypothetical protein	NA	NA	NA	NA
WP_099521336.1\|7213256_7213490_-	hypothetical protein	A0A0Y0ATQ5	Bacillus_phage	2.6e-10	44.3
WP_099521337.1\|7213783_7214140_-	ASCH domain-containing protein	A0A2I7R6Q1	Vibrio_phage	5.2e-18	47.8
WP_099521338.1\|7214154_7214388_-	hypothetical protein	NA	NA	NA	NA
WP_099521339.1\|7214380_7215223_-	ParM/StbA family protein	E5DV70	Deep-sea_thermophilic_phage	1.0e-59	47.5
7214974:7214987	attR	NA	NA	NA	NA
WP_099521340.1\|7215333_7216722_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-95	45.7
WP_099521341.1\|7216738_7217083_-	hypothetical protein	NA	NA	NA	NA
WP_099521342.1\|7217060_7217936_-	helix-turn-helix domain-containing protein	S6BFM4	Thermus_phage	1.8e-27	31.6
WP_099521905.1\|7217961_7218933_-	DUF3102 domain-containing protein	NA	NA	NA	NA
WP_099521343.1\|7218972_7219293_-	hypothetical protein	NA	NA	NA	NA
WP_099521344.1\|7219353_7220073_-	hypothetical protein	A0A0S2MVI5	Bacillus_phage	3.7e-63	52.5
WP_099521345.1\|7220101_7220488_-	replication terminator protein	A0A1L2JY32	Aeribacillus_phage	6.7e-11	35.1
WP_172455686.1\|7220524_7220677_-	hypothetical protein	NA	NA	NA	NA
WP_099521346.1\|7220681_7220870_-	hypothetical protein	NA	NA	NA	NA
WP_099521906.1\|7220984_7221680_-	site-specific DNA-methyltransferase	A0A1D8KTH4	Synechococcus_phage	1.1e-72	55.8
WP_099521347.1\|7222235_7222445_-	hypothetical protein	NA	NA	NA	NA
WP_099521348.1\|7222461_7222716_-	helix-turn-helix domain-containing protein	S5MNZ7	Brevibacillus_phage	9.7e-19	60.0
WP_099521349.1\|7222847_7223165_-	hypothetical protein	NA	NA	NA	NA
WP_099521350.1\|7223175_7223508_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_099521351.1\|7223520_7223760_-	helix-turn-helix domain-containing protein	A0A0S2GLE0	Bacillus_phage	1.5e-05	41.5
WP_099521352.1\|7223913_7224249_+	helix-turn-helix transcriptional regulator	D2XQ11	Bacillus_virus	1.5e-11	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016808

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection