CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP024360	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6	0 crisprs	NA	0	0	0
NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	0 crisprs	NA	0	0	0
NZ_CP024364	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9	1 crisprs	NA	0	1	0
NZ_CP024356	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2	0 crisprs	NA	0	0	0
NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	0 crisprs	NA	0	0	0
NZ_CP024357	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-3, complete sequence	0 crisprs	NA	0	0	0
NZ_CP024363	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-8	0 crisprs	NA	0	0	0
NZ_CP024368	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-13	0 crisprs	NA	0	0	0
NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP024370	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp6, complete sequence	0 crisprs	NA	0	0	0
NZ_CP024369	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-14	0 crisprs	NA	0	0	0
NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	2 crisprs	NA	2	2	0
NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	1 crisprs	NA	1	1	0
NZ_CP024351	Borrelia miyamotoi strain Izh-16 chromosome, complete genome	0 crisprs	NA	0	0	1
NZ_CP024352	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence	0 crisprs	NA	0	0	0
NZ_CP024367	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-12	0 crisprs	NA	0	0	0
NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	0 crisprs	NA	0	0	0
NZ_CP024366	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-11	0 crisprs	NA	0	0	0
NZ_CP024358	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence	0 crisprs	NA	0	0	0
NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	1 crisprs	NA	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024364_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024364_1

1805-1962

Orphan

Consensus_repeat	Method
CTGATATTAAAGAACTTGATAATAAAATAAATACTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024364_1

>merge|NZ_CP024364|1|1805-1962|CRISPRCasFinder
CTGATATTGAAAAAGTAGAAACAAACTTAAAATCTGATATTAAAGAACTTGATAATAAAATAAATACTGTTGAAAATAACTTAAATAACAAAATTGATTCTGTTAAAACTGAATTGAAAGCTGATATTAAAGAACTTGATAATAAAATCAATACTGTT

>NZ_CP024364|1|1|1805-1962|CRISPRCasFinder
CTGATATTGAAAAAGTAGAAACAAACTTAAAATCTGAT	ATTAAAGAACTTGATAATAAAATAAATACTGTTGAAAATAACTTAAATAACAAAATTGATTCTGTTAAAACTGAATTGAAAG
CTGATATTAAAGAACTTGATAATAAAATCAATACTGTT

>NZ_CP024364.1|WP_025444425.1|1251_1527_-|hypothetical-protein
MKNKKEIKFPVKKKKSLREVDMEIEEFIDQVDANMEQMDRDFKEFKRRYGEDKSFDDWMAYEEKEKRIKERKLYSKIEHLSFNFKKELSKK
>NZ_CP024364.1|WP_099528602.1|34_724_+|SIMPL-domain-containing-protein
MEKKLVIVLSSLVFVLASVIISSGIKNIGIKNGNYVTVKGLSEKEVLSTSASWNLQYELGGNTIDEINKSNNANFLMIKDFFVSYGFHEDEINIRSMNFNIANYRDALYKYNAYISLSVYTKDINKMEQASKNIINLYNKGILFTSNDGPSYYFDKINDVKPEMLADSIKNALGAALEFAKNSGTVLGKIKTANQGYFKFLPVDRSLENHERYPKKILRVVTTVSYYLD
>NZ_CP024364.1|WP_025444423.1|2807_3587_+|hypothetical-protein
MFKTLILTLIFSILSCDLISEKNSHNILLKLEKELINYNMKAKQKQMTLEKEKQAFVASNTNNSSSPSPVLSTEVQAYLNEQISKSKKLEKKCEEIIKITSEAIKEMEALYNKALEMEKKANEIKTMSDKARANKDNLNWSTNKKIQVDTLSKQAQNKISPTKYWTEETKRIYQSLKGSIETAIGVLNYTHQLGEEIKTGQLPENWTIRIIENNQSLNDIIKKCEETLKEYDDKKNAKNFVKELEKYVQEALHIIESNI
>NZ_CP024364.1|WP_025444459.1|6677_7130_-|hypothetical-protein
MKKIGNIKLYKLGEVVDILETRFNYQTTTSHICRKASILNAYITYNGVRYIPEKIINELTAAINTKKMKANIQTLIAKKLETIKKSLNIHEQKNEISTIKTTNEIIKEIIKEITQLKQEIENKNKEILTLKEEIQNIKEQTQKMIQTKFI
>NZ_CP024364.1|WP_132998558.1|7581_7878_+|hypothetical-protein
MVLNAIQGFLFQFKKEMMEELRVESENRLRSEFLALKTFLREDLKSDIDKLNLESKEMLTELQILLLKERFKIKSAFKEELEKCFDSLKRFEEVNDEK
>NZ_CP024364.1|WP_099498386.1|8574_8754_+|hypothetical-protein
MRTVKNINKLFDAIMAKDFLMQEFGSFVGESKANLVREGVKFTSSILNFIKKLKRILYL
>NZ_CP024364.1|WP_156768824.1|10102_10264_+|hypothetical-protein
MNEDKRAYEIINFKDADTLTSSLFDVSKDMLSGLGPGELWPQQAALSFTVGIY
>NZ_CP024364.1|WP_025444458.1|11468_11978_+|Mlp-family-lipoprotein
MKKHLLSSVKTGKVRSRSKNCDAALTIEEEQKFKLFDLALSKAIEQIGNRDNFRANQGETFLVWIRKNMQKQKELAYAFTRVYNFLENKRQKHASEMTLEEYVMDAIEHGKNEFAENLHMRIKDFFIRLLLRISLKGSAEHMFSYLKPILLGKNKETAYITLKLLSTQD
>NZ_CP024364.1|WP_025444457.1|12582_12777_+|hypothetical-protein
MDRNSVDKKIESVEKLASIFAKRTRILKDLVEQYLDVYLKVKKQNALVETYNIIKSNIYNQQCS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024364_1	1.1\|1843\|82\|NZ_CP024364\|CRISPRCasFinder	1843-1924	82	NZ_CP024218	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10	15973-16054	22	0.732
NZ_CP024364_1	1.1\|1843\|82\|NZ_CP024364\|CRISPRCasFinder	1843-1924	82	NZ_CP024405	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence	15950-16031	22	0.732
NZ_CP024364_1	1.1\|1843\|82\|NZ_CP024364\|CRISPRCasFinder	1843-1924	82	NZ_CP024384	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9	15776-15857	22	0.732
NZ_CP024364_1	1.1\|1843\|82\|NZ_CP024364\|CRISPRCasFinder	1843-1924	82	NZ_CP024364	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9	1843-1924	22	0.732

1. spacer 1.1|1843|82|NZ_CP024364|CRISPRCasFinder matches to NZ_CP024218 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10) position: , mismatch: 22, identity: 0.732

attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	CRISPR spacer
attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	Protospacer
************************************************************

2. spacer 1.1|1843|82|NZ_CP024364|CRISPRCasFinder matches to NZ_CP024405 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence) position: , mismatch: 22, identity: 0.732

attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	CRISPR spacer
attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	Protospacer
************************************************************

3. spacer 1.1|1843|82|NZ_CP024364|CRISPRCasFinder matches to NZ_CP024384 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9) position: , mismatch: 22, identity: 0.732

attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	CRISPR spacer
attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	Protospacer
************************************************************

4. spacer 1.1|1843|82|NZ_CP024364|CRISPRCasFinder matches to NZ_CP024364 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9) position: , mismatch: 22, identity: 0.732

attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	CRISPR spacer
attaaagaacttgataataaaataaatactgttgaaaataacttaaataacaaaattgat	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024362_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024362_1

16071-16185

Orphan

Consensus_repeat	Method
GGTTGTAAATGGTGTTCAAGGAGATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024362_1

>merge|NZ_CP024362|1|16071-16185|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAACCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGAGGTTGTAAATGTTGTTCAAGGAGATGAA

>NZ_CP024362|1|1|16071-16185|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAA	CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA
GGTTGTAAATGTTGTTCAAGGAGATGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024362.1\|WP_084821540.1\|20233_21118_-\|complement-regulator-acquiring-protein	unknown	unknown	gnl\|CDD\|368577
NZ_CP024362.1\|WP_025444408.1\|7210_8236_+\|Variable-large-protein-5	unknown	unknown	gnl\|CDD\|376417
NZ_CP024362.1\|WP_051480342.1\|10424_11450_+\|Variable-large-protein-18	unknown	unknown	gnl\|CDD\|376417
NZ_CP024362.1\|WP_099498348.1\|12789_13443_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366644
NZ_CP024362.1\|WP_025444230.1\|18851_20150_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024362.1\|WP_025444230.1\|16918_18217_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024362.1\|WP_025444410.1\|4535_5096_-\|DUF226-domain-containing-protein	unknown	unknown	gnl\|CDD\|308504
NZ_CP024362.1\|WP_025444409.1\|5105_6191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367076
NZ_CP024362.1\|WP_044003917.1\|8379_9063_+\|Variable-small-protein-1	unknown	unknown	gnl\|CDD\|366644
NZ_CP024362.1\|WP_084821557.1\|3166_3742_-\|chromosome-replication/partitioning-protein	unknown	unknown	gnl\|CDD\|376591
NZ_CP024362.1\|WP_025444411.1\|3804_4560_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP024362.1\|WP_099498350.1\|11594_12629_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024362.1\|WP_099498349.1\|13809_14700_+\|P12-family-lipoprotein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024362.1\|WP_025444410.1\|4535_5096_-\|DUF226-domain-containing-protein	gnl\|CDD\|308504	pfam02890, DUF226, Borrelia family of unknown function DUF226. This family of proteins are found in Borrelia. The proteins are about 190 amino acids long and have no known function.	1.75322e-50
NZ_CP024362.1\|WP_025444409.1\|5105_6191_-\|hypothetical-protein	gnl\|CDD\|367076	pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown.	1.4546e-60
NZ_CP024362.1\|WP_084821540.1\|20233_21118_-\|complement-regulator-acquiring-protein	gnl\|CDD\|368577	pfam05714, Borrelia_lipo_1, Borrelia burgdorferi virulent strain associated lipoprotein. This family consists of several virulent strain associated lipoproteins from the Lyme disease spirochete Borrelia burgdorferi.	2.18935e-15
NZ_CP024362.1\|WP_044003917.1\|8379_9063_+\|Variable-small-protein-1	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.36823e-56
NZ_CP024362.1\|WP_025444408.1\|7210_8236_+\|Variable-large-protein-5	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	3.3685e-62
NZ_CP024362.1\|WP_099498348.1\|12789_13443_+\|hypothetical-protein	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.43324e-56
NZ_CP024362.1\|WP_025444411.1\|3804_4560_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.97985e-42
NZ_CP024362.1\|WP_099498350.1\|11594_12629_+\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	5.79394e-60
NZ_CP024362.1\|WP_051480342.1\|10424_11450_+\|Variable-large-protein-18	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	3.34217e-50
NZ_CP024362.1\|WP_084821557.1\|3166_3742_-\|chromosome-replication/partitioning-protein	gnl\|CDD\|376591	pfam01672, Plasmid_parti, Putative plasmid partition protein. This family consists of conserved hypothetical proteins from Borrelia burgdorferi the lyme disease spirochaete, some of which are putative plasmid partition proteins.	2.13252e-28

>NZ_CP024362.1|WP_099498349.1|13809_14700_+|P12-family-lipoprotein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEEQADVVEQHMEEGIKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024362.1|WP_099498348.1|12789_13443_+|hypothetical-protein
MSKRKTLSAIKMTLFLIINIVMISCGNGGPAPKEGQAAKADGTVIDLVKVSKKIKDAVEFATSVKEVETLVKSVDELAKAIGKKIKNDGTLENETDKNGSLLAGAHSVILAVKTKVGALETTSGISNELKTKITDVKSKAEAFLGKLKDKSSDLGKNDVKDTDAKSAILTTDATKDKGAKELVELNTAVDELLKVANDEVESAIKVFISPVKAATSG
>NZ_CP024362.1|WP_099498350.1|11594_12629_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLRFNSNTKKSDVGAYFKKVHDTVEGTKKSLEKIVADMKTEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDASDPIGNVAVAAAGGGAGVAGTGVDSLVKGIKGIVDVVLKGVGNADAGDANKAEDGKTERTAAGDGEAGKLFATANAGDTADKAKKVAADAAKAVGAVTGADILQAIVKNGASAAADAAKAKAKDGIIAGAIALRAMAKGGKFANASAADNEGIVTSAVKGAALSAVTKALDTLTVAIRKTMDLGLKEVKDAMKINNAINANDTIVTSDKKTSEAKSE
>NZ_CP024362.1|WP_051480342.1|10424_11450_+|Variable-large-protein-18
MIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSTEKVFYAFIELVSDILGLRVTKDTKKSEVASYFNNLGGKLGEASKELEQVAVKATADADKDGLLNKSVREAVNVAKTTLNILKNHLESLKDIGDANKVVDVTSNQQGVAADTEKLKTVFSALKGIVDTAKTGGEVKEPSTSNVTLASNSIGVTDAKNGAKVLTIGAAGAAVGDKAAAIVSSVSGEEILAAVVKSGESDAALTANATADTSAISFAKGAATADHLAQDTAKAAAVSGGIALRSLVKGGKLAANNNNDDKAVQGAGITAVNKLLVAVEDIIKKTVKNVLEKAKTKIDEARNPKIAE
>NZ_CP024362.1|WP_044003917.1|8379_9063_+|Variable-small-protein-1
MKKMRKRKKVSAIIMTLFLIINIVMMSCGSGGPAPKEGQAAKADGTVIDLAKVSKKIKYAVEFAASVKEIETLVKSVDELAKAIGKKIKNDNSNFEAEKDHNGALIAGAFQVILTVKGKLTSLEQIFGISDELKTKVGMAKKESEAFLTQVKSKHTDLAKEGVTDAHAKSVIDVADGTKDKGASELVKLNTEIDELLKAAKMTVDAAIAELTNPVKVAATGDQSGIR
>NZ_CP024362.1|WP_025444408.1|7210_8236_+|Variable-large-protein-5
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLGFNTNTKKSDVGAYFKKVHDTVEGTKTSLEKIVADMKTEGNPNASGVETAVKILVDNTLSKIIEGASEALKGAESDDPIGNVADQNGGAAGIGVDSLVKGIKGIVDVVLKGVGNADAGDDKKASDGSTARTANAADGEAGKLFASANAGTAENAKKSAADAAKAVGAVTGADILKAMVKDNGEAAKLAKETSGNVTVAPKDATIAGGIALRAMAKGGKFAGPSDNASVDAKKIVAGAATSAVTKALDTLTIAIRNTIDLGLKEVKAAMKINANDNTPITSDNKTSEAKSK
>NZ_CP024362.1|WP_025444409.1|5105_6191_-|hypothetical-protein
MVDTKKLTNKYQHNLIVLISTLAYMNSKFKKYTQSNILYYFNNNLRKNGQKPIKLKTLQSYLYKLEKIFKVTNNYYRHLGENYGTEINYKLIYPKKICYYKINKHFRDKKEARHQQRANVYHQKTCIKNGNVEKWECIYNNIINNNREKKEIEKLQLEKYAMKCRFKTKNYLSILNSKETKDIKIEKLRALKKEEIKLEKISKTKQKESKLAIKQKKLNRMLDETKARLEIEGYNGEQLEVRIKEIYEQYKNKPHFIIENNKYNDLRKIIGKLKKIVEHERKNVKENEKNIRNNVFSILLEQLKHKIDIQKLIPILKGYLNKRNKLEYREVFSNYYYYDILELAKEADYLRIGEEYEKIVT
>NZ_CP024362.1|WP_025444410.1|4535_5096_-|DUF226-domain-containing-protein
MNSVLERLKEKKVEIKEKESTTIFVKIEEVNKKTTYHTKIMKDLYIFGARNNQKHRFFISFRGLFNQQKIKSFYLFSLKGNDRFLGIYYGYRKPIKNVVTRYEENGIMKASTFSRVYYIEFRFKKGSIFCYIVGISYLLKKEKVNTRYYESLIERILNLEKQVYEFYNKELSNGGIITKWIKKRQK
>NZ_CP024362.1|WP_025444411.1|3804_4560_-|ParA-family-protein
MDKKKTKIITLASIKGGVGKSTSSIIFSTLLARKHKVLLIDMDPQASVTSYFSDILEDQNVDIKNKNIYEVLVDKISIDLSIFKVSDNLNLLPSHLYLYLFYDDNMPFKETRLQDNLKLLVDYDYVIIDTSPSLGIVLTNVLVVSDYIIVPMTAQKWAIESLQLLEFALKRLRLQVPIFPMVTTFKKNNTYKHLLDIINRDVNFLGVIPEREDLNKRIAQNDIFDLDRDYIREYQTALDKFFQLSEKLVTL
>NZ_CP024362.1|WP_084821557.1|3166_3742_-|chromosome-replication/partitioning-protein
MSSRTKAMAIRIKDRIMENEEHVIIVEHSKEEAIERYKYLKDRLVFNSQKEIHNKIENMKILKEIKDNKYYKLDGYNNFEEFTRNYRLAKSQAYDYLRIANALDEKIVEENYIVQNGIQNVLLFLRNKEGFNIRKSSRNVIKPLRFQLKTEQAYIYYKSKAKFTSFLLENLLKYEKILLDKYESEYILSKK
>NZ_CP024362.1|WP_025444230.1|16918_18217_-|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024362.1|WP_025444230.1|18851_20150_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024362.1|WP_084821540.1|20233_21118_-|complement-regulator-acquiring-protein
MKKTLFIFKLLILGLVVSCNLDSKLLDTKERNKDVSKGVVNGVQGDEPAVKEESVRKEVIEDDDSKEVVNVVQGDESSSKGYVFDEKEKLISELKKDIDNVKGLVSQDKAEVEDENQYGMKDQVFKAVVNTANNKTLEHDENKELRRLFYSSLLYNKDKIKEFAEILKKIESDNTNKGTWIRDIMNVSILDLQSNFEEVIARLEANKDKLDKLSLDDLREVKTKLEEIQLQKLNWRKAVNSLIESYKAKTDDIDSDSEKLIKHVEKEYKDLITVKIPGMKSVYDKIVGVLDTIE

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Crispr_ID: NZ_CP024362_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024362_2

20891-21005

Orphan

Consensus_repeat	Method
TTCATCTCCTTGAACAACATTTACAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024362_2

>merge|NZ_CP024362|2|20891-21005|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTGAACACCATTTACAACC

>NZ_CP024362|2|2|20891-21005|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTGAACACCATTTACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024362.1\|WP_025444230.1\|16918_18217_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024362.1\|WP_025444410.1\|4535_5096_-\|DUF226-domain-containing-protein	unknown	unknown	gnl\|CDD\|308504
NZ_CP024362.1\|WP_025444409.1\|5105_6191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367076
NZ_CP024362.1\|WP_044003917.1\|8379_9063_+\|Variable-small-protein-1	unknown	unknown	gnl\|CDD\|366644
NZ_CP024362.1\|WP_025444408.1\|7210_8236_+\|Variable-large-protein-5	unknown	unknown	gnl\|CDD\|376417
NZ_CP024362.1\|WP_051480342.1\|10424_11450_+\|Variable-large-protein-18	unknown	unknown	gnl\|CDD\|376417
NZ_CP024362.1\|WP_099498350.1\|11594_12629_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024362.1\|WP_099498348.1\|12789_13443_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366644
NZ_CP024362.1\|WP_025444230.1\|18851_20150_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024362.1\|WP_099498349.1\|13809_14700_+\|P12-family-lipoprotein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024362.1\|WP_025444410.1\|4535_5096_-\|DUF226-domain-containing-protein	gnl\|CDD\|308504	pfam02890, DUF226, Borrelia family of unknown function DUF226. This family of proteins are found in Borrelia. The proteins are about 190 amino acids long and have no known function.	1.75322e-50
NZ_CP024362.1\|WP_025444409.1\|5105_6191_-\|hypothetical-protein	gnl\|CDD\|367076	pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown.	1.4546e-60
NZ_CP024362.1\|WP_044003917.1\|8379_9063_+\|Variable-small-protein-1	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.36823e-56
NZ_CP024362.1\|WP_025444408.1\|7210_8236_+\|Variable-large-protein-5	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	3.3685e-62
NZ_CP024362.1\|WP_099498348.1\|12789_13443_+\|hypothetical-protein	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.43324e-56
NZ_CP024362.1\|WP_099498350.1\|11594_12629_+\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	5.79394e-60
NZ_CP024362.1\|WP_051480342.1\|10424_11450_+\|Variable-large-protein-18	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	3.34217e-50

>NZ_CP024362.1|WP_025444230.1|18851_20150_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024362.1|WP_025444230.1|16918_18217_-|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024362.1|WP_099498349.1|13809_14700_+|P12-family-lipoprotein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEEQADVVEQHMEEGIKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024362.1|WP_099498348.1|12789_13443_+|hypothetical-protein
MSKRKTLSAIKMTLFLIINIVMISCGNGGPAPKEGQAAKADGTVIDLVKVSKKIKDAVEFATSVKEVETLVKSVDELAKAIGKKIKNDGTLENETDKNGSLLAGAHSVILAVKTKVGALETTSGISNELKTKITDVKSKAEAFLGKLKDKSSDLGKNDVKDTDAKSAILTTDATKDKGAKELVELNTAVDELLKVANDEVESAIKVFISPVKAATSG
>NZ_CP024362.1|WP_099498350.1|11594_12629_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLRFNSNTKKSDVGAYFKKVHDTVEGTKKSLEKIVADMKTEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDASDPIGNVAVAAAGGGAGVAGTGVDSLVKGIKGIVDVVLKGVGNADAGDANKAEDGKTERTAAGDGEAGKLFATANAGDTADKAKKVAADAAKAVGAVTGADILQAIVKNGASAAADAAKAKAKDGIIAGAIALRAMAKGGKFANASAADNEGIVTSAVKGAALSAVTKALDTLTVAIRKTMDLGLKEVKDAMKINNAINANDTIVTSDKKTSEAKSE
>NZ_CP024362.1|WP_051480342.1|10424_11450_+|Variable-large-protein-18
MIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSTEKVFYAFIELVSDILGLRVTKDTKKSEVASYFNNLGGKLGEASKELEQVAVKATADADKDGLLNKSVREAVNVAKTTLNILKNHLESLKDIGDANKVVDVTSNQQGVAADTEKLKTVFSALKGIVDTAKTGGEVKEPSTSNVTLASNSIGVTDAKNGAKVLTIGAAGAAVGDKAAAIVSSVSGEEILAAVVKSGESDAALTANATADTSAISFAKGAATADHLAQDTAKAAAVSGGIALRSLVKGGKLAANNNNDDKAVQGAGITAVNKLLVAVEDIIKKTVKNVLEKAKTKIDEARNPKIAE
>NZ_CP024362.1|WP_044003917.1|8379_9063_+|Variable-small-protein-1
MKKMRKRKKVSAIIMTLFLIINIVMMSCGSGGPAPKEGQAAKADGTVIDLAKVSKKIKYAVEFAASVKEIETLVKSVDELAKAIGKKIKNDNSNFEAEKDHNGALIAGAFQVILTVKGKLTSLEQIFGISDELKTKVGMAKKESEAFLTQVKSKHTDLAKEGVTDAHAKSVIDVADGTKDKGASELVKLNTEIDELLKAAKMTVDAAIAELTNPVKVAATGDQSGIR
>NZ_CP024362.1|WP_025444408.1|7210_8236_+|Variable-large-protein-5
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLGFNTNTKKSDVGAYFKKVHDTVEGTKTSLEKIVADMKTEGNPNASGVETAVKILVDNTLSKIIEGASEALKGAESDDPIGNVADQNGGAAGIGVDSLVKGIKGIVDVVLKGVGNADAGDDKKASDGSTARTANAADGEAGKLFASANAGTAENAKKSAADAAKAVGAVTGADILKAMVKDNGEAAKLAKETSGNVTVAPKDATIAGGIALRAMAKGGKFAGPSDNASVDAKKIVAGAATSAVTKALDTLTIAIRNTIDLGLKEVKAAMKINANDNTPITSDNKTSEAKSK
>NZ_CP024362.1|WP_025444409.1|5105_6191_-|hypothetical-protein
MVDTKKLTNKYQHNLIVLISTLAYMNSKFKKYTQSNILYYFNNNLRKNGQKPIKLKTLQSYLYKLEKIFKVTNNYYRHLGENYGTEINYKLIYPKKICYYKINKHFRDKKEARHQQRANVYHQKTCIKNGNVEKWECIYNNIINNNREKKEIEKLQLEKYAMKCRFKTKNYLSILNSKETKDIKIEKLRALKKEEIKLEKISKTKQKESKLAIKQKKLNRMLDETKARLEIEGYNGEQLEVRIKEIYEQYKNKPHFIIENNKYNDLRKIIGKLKKIVEHERKNVKENEKNIRNNVFSILLEQLKHKIDIQKLIPILKGYLNKRNKLEYREVFSNYYYYDILELAKEADYLRIGEEYEKIVT
>NZ_CP024362.1|WP_025444410.1|4535_5096_-|DUF226-domain-containing-protein
MNSVLERLKEKKVEIKEKESTTIFVKIEEVNKKTTYHTKIMKDLYIFGARNNQKHRFFISFRGLFNQQKIKSFYLFSLKGNDRFLGIYYGYRKPIKNVVTRYEENGIMKASTFSRVYYIEFRFKKGSIFCYIVGISYLLKKEKVNTRYYESLIERILNLEKQVYEFYNKELSNGGIITKWIKKRQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024355.1	37689-37747	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024361.1	21519-21577	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024355.1	37689-37747	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024361.1	21519-21577	1.0

1. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to position: 37689-37747, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to position: 21519-21577, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

3. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to position: 37689-37747, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to position: 21519-21577, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	1.0
NZ_CP024362_1	1.1\|16099\|59\|NZ_CP024362\|CRISPRCasFinder	16099-16157	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	1.0
NZ_CP024362_2	2.1\|20919\|59\|NZ_CP024362\|CRISPRCasFinder	20919-20977	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	1.0

1. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

3. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

4. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

5. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

6. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

7. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

8. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

9. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

10. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

11. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

12. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

13. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

14. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

15. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

16. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

17. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

18. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

19. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

20. spacer 1.1|16099|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

21. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

22. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

23. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

24. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

25. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

26. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

27. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

28. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

29. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

30. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

31. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

32. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

33. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

34. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

35. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

36. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

37. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

38. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

39. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

40. spacer 2.1|20919|59|NZ_CP024362|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024354_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024354_1

2411-2525

Orphan

Consensus_repeat	Method
TTCATCTCCTTGAACAACATTTACAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024354_1

>merge|NZ_CP024354|1|2411-2525|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTGAACACCATTTACAACC

>NZ_CP024354|1|1|2411-2525|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTGAACACCATTTACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024354.1\|WP_051480327.1\|18075_18558_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024354.1\|WP_025444234.1\|5953_6994_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024354.1\|WP_099497295.1\|15603_16647_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024354.1\|WP_099497170.1\|10550_11624_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024354.1\|WP_025444242.1\|19097_19652_-\|chromosome-replication/partitioning-protein	unknown	unknown	gnl\|CDD\|376591
NZ_CP024354.1\|WP_025444237.1\|11776_12838_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024354.1\|WP_025444235.1\|8043_9114_-\|Variable-large-protein-18	unknown	unknown	gnl\|CDD\|376417
NZ_CP024354.1\|WP_025444230.1\|371_1670_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024354.1\|WP_099497297.1\|16943_17516_-\|vsp-protein	unknown	unknown	gnl\|CDD\|366644
NZ_CP024354.1\|WP_099568383.1\|3871_4762_-\|P12-family-lipoprotein	unknown	unknown	unknown
NZ_CP024354.1\|WP_099497171.1\|12983_13577_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417

Protein	Function_ID	Function_description	E-value
NZ_CP024354.1\|WP_099497171.1\|12983_13577_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.90865e-26
NZ_CP024354.1\|WP_099497295.1\|15603_16647_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.17064e-29
NZ_CP024354.1\|WP_025444234.1\|5953_6994_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.99194e-59
NZ_CP024354.1\|WP_025444242.1\|19097_19652_-\|chromosome-replication/partitioning-protein	gnl\|CDD\|376591	pfam01672, Plasmid_parti, Putative plasmid partition protein. This family consists of conserved hypothetical proteins from Borrelia burgdorferi the lyme disease spirochaete, some of which are putative plasmid partition proteins.	9.79345e-24
NZ_CP024354.1\|WP_025444237.1\|11776_12838_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.7131e-65
NZ_CP024354.1\|WP_025444235.1\|8043_9114_-\|Variable-large-protein-18	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.78447e-55
NZ_CP024354.1\|WP_099497170.1\|10550_11624_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.83588e-62
NZ_CP024354.1\|WP_099497297.1\|16943_17516_-\|vsp-protein	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	2.41839e-48

>NZ_CP024354.1|WP_025444230.1|371_1670_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024354.1|WP_099568383.1|3871_4762_-|P12-family-lipoprotein
MKKSILAVCMLVLLSLLSCDINALNEMLSKAREKYVEESKKVKGLNSKDGNQEGEEEQADVVEQHMEEGVKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFKDSEFVKLTEEQLRGLKSEYEQLESSFYSTLSEFRNKIGSYPRDNRRKRQEVTRFQRELNDRRFNVERLIIQVDSGLDELGSAELFFNKAKGTLKEGITERLRNKRRNYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024354.1|WP_025444234.1|5953_6994_-|Variable-large-protein-15/16
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVIFGDMITGAFGIKAETKKSEVGQYFTDIETTMKTVKDKLNDVVAKNGNYPKVKTAVDGFVAILDKIGNGAKKAAAGATGGAAIGEVVKSDAAGNGPDAGSVKNLVVGIKEIVDLVIKEGDGQADKTNPVDDDKKNIGKLFGAETSADKGAEDKHVAAASASIGAVSGADILKAIAAANADATKDGKVKDVKDAAGLALAKGTGTADDDKLTTAESKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVRQEDKSSEAIKTAEVTTSVKK
>NZ_CP024354.1|WP_025444235.1|8043_9114_-|Variable-large-protein-18
MEKRSERKNILIIMMIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSAENVFYAFMELVSDVLGFTAKTTTKKNDVGVYFNSLGVKLGEASKELEEVAKKAETGIDKNDSSKNLIKEAVEVTKKVLATLKGHLESLGQVGDSNLVGDAATDDKGVTAGTDALKGAFKALKGIIDIAEGAGVAKPKAGSTAVKLSNADNKDGAKILATDNKAGVNDVGKAAVILASVSGEEILASIVESTENKAVKISTNVTASTTPLEFALGGNGAHLAQDAALASAVSGGIALRSLVKDGKLASGAADGSAGGKEEVQKVGITAANKLLGAVEDIIKKTVKNILEKAKTKIDEARNSKTAE
>NZ_CP024354.1|WP_099497170.1|10550_11624_-|hypothetical-protein
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDVGKYFTDIETTMKAVKDKLNTVVAENSNYPKVKEVVDQFITGTLDKIAEGAKIAASGATDVASIGEVVKSDAAGNSPNAESVKNLVEGIKKIVALVITEGNGQADKTTPVDDDKKNIGKLFGAKNEASKGAEDKHVAAASASIGAVTGADILKAIAAANADAKKDGKVSEATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024354.1|WP_025444237.1|11776_12838_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKADTKKSDVGKYFTDIEKTMLSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGEAIGNATSAGHGATPADKDSVISLVKGIKTIVGVVLKDNEGNAEATKTKDEQQKSIGNLFADSAGKDDAKEENIAKASASIGAVSGADILQAIAQSKENPAVDSTDGIEKAKDAAEIAIAPAVANKKEIKEASAKKDAVIAAGIALRAMAKDGKFAAKNEEKSAHAVNGAAASAVGKTLSTLIIAIRNTVDSGLKTINETLATVKQEDKSAEATNTAESTASVKK
>NZ_CP024354.1|WP_099497171.1|12983_13577_-|hypothetical-protein
MVIKEGDGQADKTKPVDDDKKDIGRLFGAETTADSKGAEDKHVAVAIASIGVVSGADILKAIAEANAAAKKDGKVKDATDAAALALAKGTGTANDEKLTTAESKKDAVIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATNTAESTASAQQ
>NZ_CP024354.1|WP_099497295.1|15603_16647_-|hypothetical-protein
MTLFLLFSCGGQLQAEKLAAENKNNFLDSLVKIGQGFQEIFGIFGNAIGDALGLTAVKSGDKRNKVGEHFKKIGNGLTETNNKLKELAGQMSEAKNADESTIKVVEDAIKGANEVFEKLVDAITKLAGVTNDSATDIGDTASAGAAVAADKNSVDTVIAEVKKILDAAEKSGVKVEKGNAGSPVAASNSTDATAVLAANAAAGANAGPKLADEVSKADPWAMIDKIKDSKTTAGNLSQNNHYDAGTLAVGTPNHANGAGAATNADLAAAVALKAMTTSGKLSATANEVVGVKAAGVSAVNKVLGVFDLIIRKTVARNLDKIREAVKEIQYSETTGTNTQDIQSTATK
>NZ_CP024354.1|WP_099497297.1|16943_17516_-|vsp-protein
MISCGSGGPAPKEGQAAKADGTVIDLAKISKKIKDAVEFAASVKEVETLVKSVDELAKAIGKKVEAGGTLGDDGGQNGSLISGAYSVVLSADAKLGQLENKEGISTELKAKVTAAKAASKKFLDTVKGANTDLGKKDASDENAKKALLKSDAAGDKGAKDLIALNTAIDELLKATEASIEAVIAELTTLG
>NZ_CP024354.1|WP_051480327.1|18075_18558_+|hypothetical-protein
MLLFFLLAACSSLQQVEHDKITKKIRIYQYLSKNLELKGVVDYQNKTTEIFLYSKLKNHSIINQTPLTLPDGTTIEGKTSYEYDNGASAKNWINSSSFSLKKAMLEQMLNEDEYVYNKEEIKVQIGLETLKINKTKIRDFLLKLESTEKQHIQNTNNAEH
>NZ_CP024354.1|WP_025444242.1|19097_19652_-|chromosome-replication/partitioning-protein
MSKNRKIEIVRRIDLEVNSVKNLNKTREERYLELKEKLKILIKEESYNKIETARILKEINESKYYALDGYKSFTAFIKSYKIAKTSVYRYIKLVSGIDSGKIDYDLILNRGIDYAIKILESNNIISKSNVNPLRPLRFQLDDEESFHFYKSNTKFASFLLKEIFKNEKSFFDKMLDRYNNLKVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024355.1	37689-37747	0	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024361.1	21519-21577	0	1.0

1. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to position: 37689-37747, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to position: 21519-21577, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	1.0
NZ_CP024354_1	1.1\|2439\|59\|NZ_CP024354\|CRISPRCasFinder	2439-2497	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	1.0

1. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

5. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

7. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

8. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

9. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

10. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

11. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

12. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

13. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

14. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

15. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

16. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

17. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

18. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

19. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

20. spacer 1.1|2439|59|NZ_CP024354|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

450893 : 460133

Streptococcus_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025443728.1\|450893_452798_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	5.1e-136	44.0
WP_025443729.1\|452809_455242_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.9e-104	33.2
WP_099497131.1\|455345_456158_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	4.4e-12	33.1
WP_025443731.1\|456150_456858_-	hypothetical protein	A0A286QNA3	Streptococcus_phage	1.4e-11	34.1
WP_025443732.1\|456860_457613_-	ParA family protein	H7BUL8	unidentified_phage	8.1e-21	31.9
WP_025443733.1\|457763_458342_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.6e-16	32.1
WP_025443734.1\|458482_458872_+	DUF1893 domain-containing protein	NA	NA	NA	NA
WP_025443735.1\|458879_459200_-	hypothetical protein	NA	NA	NA	NA
WP_025443736.1\|459458_460133_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.1e-36	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP024355

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP024359

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024359_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024359_1

2420-2534

Orphan

Consensus_repeat	Method
TTCATCTCCTTGAACAACATTTACAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024359_1

>merge|NZ_CP024359|1|2420-2534|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTGAACACCATTTACAACC

>NZ_CP024359|1|1|2420-2534|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTGAACACCATTTACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024359.1\|WP_025444483.1\|17668_18739_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_025444230.1\|380_1679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024359.1\|WP_099497171.1\|12926_13520_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_099497295.1\|15546_16590_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_099568383.1\|3814_4705_-\|P12-family-lipoprotein	unknown	unknown	unknown
NZ_CP024359.1\|WP_099497297.1\|16886_17459_-\|vsp-protein	unknown	unknown	gnl\|CDD\|366644
NZ_CP024359.1\|WP_025444237.1\|11719_12781_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_025444235.1\|7986_9057_-\|Variable-large-protein-18	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_025444234.1\|5896_6937_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_099497170.1\|10493_11567_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376417
NZ_CP024359.1\|WP_025444482.1\|18896_19943_-\|Variable-large-protein-15/16	unknown	unknown	gnl\|CDD\|376417

Protein	Function_ID	Function_description	E-value
NZ_CP024359.1\|WP_025444237.1\|11719_12781_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.7131e-65
NZ_CP024359.1\|WP_099497171.1\|12926_13520_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.90865e-26
NZ_CP024359.1\|WP_099497295.1\|15546_16590_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.17064e-29
NZ_CP024359.1\|WP_099497297.1\|16886_17459_-\|vsp-protein	gnl\|CDD\|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	2.41839e-48
NZ_CP024359.1\|WP_025444483.1\|17668_18739_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.74369e-63
NZ_CP024359.1\|WP_025444235.1\|7986_9057_-\|Variable-large-protein-18	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.78447e-55
NZ_CP024359.1\|WP_025444234.1\|5896_6937_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.99194e-59
NZ_CP024359.1\|WP_099497170.1\|10493_11567_-\|hypothetical-protein	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.83588e-62
NZ_CP024359.1\|WP_025444482.1\|18896_19943_-\|Variable-large-protein-15/16	gnl\|CDD\|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.14628e-64

>NZ_CP024359.1|WP_025444230.1|380_1679_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024359.1|WP_099568383.1|3814_4705_-|P12-family-lipoprotein
MKKSILAVCMLVLLSLLSCDINALNEMLSKAREKYVEESKKVKGLNSKDGNQEGEEEQADVVEQHMEEGVKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFKDSEFVKLTEEQLRGLKSEYEQLESSFYSTLSEFRNKIGSYPRDNRRKRQEVTRFQRELNDRRFNVERLIIQVDSGLDELGSAELFFNKAKGTLKEGITERLRNKRRNYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024359.1|WP_025444234.1|5896_6937_-|Variable-large-protein-15/16
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVIFGDMITGAFGIKAETKKSEVGQYFTDIETTMKTVKDKLNDVVAKNGNYPKVKTAVDGFVAILDKIGNGAKKAAAGATGGAAIGEVVKSDAAGNGPDAGSVKNLVVGIKEIVDLVIKEGDGQADKTNPVDDDKKNIGKLFGAETSADKGAEDKHVAAASASIGAVSGADILKAIAAANADATKDGKVKDVKDAAGLALAKGTGTADDDKLTTAESKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVRQEDKSSEAIKTAEVTTSVKK
>NZ_CP024359.1|WP_025444235.1|7986_9057_-|Variable-large-protein-18
MEKRSERKNILIIMMIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSAENVFYAFMELVSDVLGFTAKTTTKKNDVGVYFNSLGVKLGEASKELEEVAKKAETGIDKNDSSKNLIKEAVEVTKKVLATLKGHLESLGQVGDSNLVGDAATDDKGVTAGTDALKGAFKALKGIIDIAEGAGVAKPKAGSTAVKLSNADNKDGAKILATDNKAGVNDVGKAAVILASVSGEEILASIVESTENKAVKISTNVTASTTPLEFALGGNGAHLAQDAALASAVSGGIALRSLVKDGKLASGAADGSAGGKEEVQKVGITAANKLLGAVEDIIKKTVKNILEKAKTKIDEARNSKTAE
>NZ_CP024359.1|WP_099497170.1|10493_11567_-|hypothetical-protein
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDVGKYFTDIETTMKAVKDKLNTVVAENSNYPKVKEVVDQFITGTLDKIAEGAKIAASGATDVASIGEVVKSDAAGNSPNAESVKNLVEGIKKIVALVITEGNGQADKTTPVDDDKKNIGKLFGAKNEASKGAEDKHVAAASASIGAVTGADILKAIAAANADAKKDGKVSEATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024359.1|WP_025444237.1|11719_12781_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKADTKKSDVGKYFTDIEKTMLSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGEAIGNATSAGHGATPADKDSVISLVKGIKTIVGVVLKDNEGNAEATKTKDEQQKSIGNLFADSAGKDDAKEENIAKASASIGAVSGADILQAIAQSKENPAVDSTDGIEKAKDAAEIAIAPAVANKKEIKEASAKKDAVIAAGIALRAMAKDGKFAAKNEEKSAHAVNGAAASAVGKTLSTLIIAIRNTVDSGLKTINETLATVKQEDKSAEATNTAESTASVKK
>NZ_CP024359.1|WP_099497171.1|12926_13520_-|hypothetical-protein
MVIKEGDGQADKTKPVDDDKKDIGRLFGAETTADSKGAEDKHVAVAIASIGVVSGADILKAIAEANAAAKKDGKVKDATDAAALALAKGTGTANDEKLTTAESKKDAVIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATNTAESTASAQQ
>NZ_CP024359.1|WP_099497295.1|15546_16590_-|hypothetical-protein
MTLFLLFSCGGQLQAEKLAAENKNNFLDSLVKIGQGFQEIFGIFGNAIGDALGLTAVKSGDKRNKVGEHFKKIGNGLTETNNKLKELAGQMSEAKNADESTIKVVEDAIKGANEVFEKLVDAITKLAGVTNDSATDIGDTASAGAAVAADKNSVDTVIAEVKKILDAAEKSGVKVEKGNAGSPVAASNSTDATAVLAANAAAGANAGPKLADEVSKADPWAMIDKIKDSKTTAGNLSQNNHYDAGTLAVGTPNHANGAGAATNADLAAAVALKAMTTSGKLSATANEVVGVKAAGVSAVNKVLGVFDLIIRKTVARNLDKIREAVKEIQYSETTGTNTQDIQSTATK
>NZ_CP024359.1|WP_099497297.1|16886_17459_-|vsp-protein
MISCGSGGPAPKEGQAAKADGTVIDLAKISKKIKDAVEFAASVKEVETLVKSVDELAKAIGKKVEAGGTLGDDGGQNGSLISGAYSVVLSADAKLGQLENKEGISTELKAKVTAAKAASKKFLDTVKGANTDLGKKDASDENAKKALLKSDAAGDKGAKDLIALNTAIDELLKATEASIEAVIAELTTLG
>NZ_CP024359.1|WP_025444483.1|17668_18739_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLRKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANSNYEKVKTVVDQFITETLNKIAVGAKEAAKGATTDIAIGNATSNGHGASPAADKGSVISLVKGIKTIVDVALKDKGDAGATKTGDDKKDIGNLFADDAGKAEAKEENIAKAVASIGAVTGADVLQAIVQSNENPTANSTDGIEKAKDAAEIAIAPAVSNKKEIKEASAKKDAVIAAGIALRAMAKGGKFAANNNAKDADAVNGVAASVVGKTLSTLIIAVRNTVDSGLKTINEVLSTLKQEDKSAEVTKTAESTASVKNKEL
>NZ_CP024359.1|WP_025444482.1|18896_19943_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSEVGQYFTSIAETMESVKKKLQSEVAKNGNYEKVKTVVDKFITETLDKIASGAKEAAKGANGDAAIGNAVKNEDAAPGEVASVNALVKGIKEIVGVVLKKGEGDSEATKTADTEKKSVGKLLGKGANDGTETQAAAASASIGAVSGVDILQAIAKSGEAATGEIKIEEAKNAAEIAAAKADSKDLEIDSAKKDAVIAGGIALRAMAKNGKFAAKNNEDKSAHSVNGVAASAVGKTLSTLIIAIRNTVDSGLKAINEVLATVKQEDKSGESTNAAEVTTSAQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024355.1	37689-37747	0	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024361.1	21519-21577	0	1.0

1. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to position: 37689-37747, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to position: 21519-21577, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	1.0
NZ_CP024359_1	1.1\|2448\|59\|NZ_CP024359\|CRISPRCasFinder	2448-2506	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	1.0

1. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

5. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

7. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

8. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

9. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

10. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

11. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

12. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

13. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

14. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

15. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

16. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

17. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

18. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

19. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

20. spacer 1.1|2448|59|NZ_CP024359|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
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Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_CP024361

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage