CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	0 crisprs	NA	0	0	0	0
NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	0 crisprs	NA	0	0	0	0
NZ_CP024377	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024376	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp26, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	0 crisprs	NA	0	0	0	0
NZ_CP024374	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp41, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024384	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9	0 crisprs	NA	0	0	0	0
NZ_CP024381	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6	0 crisprs	NA	0	0	0	0
NZ_CP024371	Borrelia miyamotoi strain Izh-14 chromosome, complete genome	0 crisprs	NA	0	0	1	0
NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	0 crisprs	NA	0	0	0	0
NZ_CP024389	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp6-1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024388	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-13	0 crisprs	NA	0	0	0	0
NZ_CP024378	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence	1 crisprs	NA	0	1	0	0
NZ_CP024383	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-8	0 crisprs	NA	0	0	0	0
NZ_CP024387	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-12	0 crisprs	NA	0	0	0	0
NZ_CP024382	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7	0 crisprs	NA	0	0	0	0
NZ_CP024372	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	1 crisprs	NA	1	1	0	0
NZ_CP024375	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2	0 crisprs	NA	0	0	0	0

1. NZ_CP024380

2. NZ_CP024385

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024385_1

• CRISPR_ID: NZ_CP024385_1
• CRISPR_location: 765-879
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024385_1

Consensus_repeat	Method
TTCATCTCCTTGAACACCATTTACAACC	CRISPRCasFinder

spacers of NZ_CP024385_1

>1.1|793|59|NZ_CP024385|CRISPRCasFinder
TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG

CRISPR arrays and Neighbor proteins around NZ_CP024385_1

CRISPR arrays

The CRISPR arrays of NZ_CP024385_1

>merge|NZ_CP024385|1|765-879|CRISPRCasFinder
TTCATCTCCTTGAACACCATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTTAACACCATTTACAACC

>NZ_CP024385|1|1|765-879|CRISPRCasFinder
TTCATCTCCTTGAACACCATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTTAACACCATTTACAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024385.1|WP_099528608.1|7824_8865_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024385.1|WP_099528603.1|2096_3005_-|P12-family-lipoprotein	unknown	unknown	unknown
NZ_CP024385.1|WP_099528610.1|10240_11290_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024385.1|WP_099528604.1|3371_3998_-|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024385.1|WP_099528605.1|4151_5204_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024385.1|WP_099528612.1|12281_13301_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024385.1|WP_099528606.1|5434_6484_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024385.1|WP_099528609.1|9018_10041_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024385.1|WP_099528611.1|11468_12092_-|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024385.1|WP_099528607.1|6630_7677_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024385.1|WP_099528608.1|7824_8865_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.26231e-57
NZ_CP024385.1|WP_099528604.1|3371_3998_-|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	9.2708e-45
NZ_CP024385.1|WP_099528610.1|10240_11290_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.05436e-63
NZ_CP024385.1|WP_099528605.1|4151_5204_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.84243e-58
NZ_CP024385.1|WP_099528612.1|12281_13301_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.16491e-64
NZ_CP024385.1|WP_099528606.1|5434_6484_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	5.19962e-67
NZ_CP024385.1|WP_099528609.1|9018_10041_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.83656e-64
NZ_CP024385.1|WP_099528611.1|11468_12092_-|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	4.28028e-52
NZ_CP024385.1|WP_099528607.1|6630_7677_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.58742e-61

Protein sequences

>NZ_CP024385.1|WP_099528603.1|2096_3005_-|P12-family-lipoprotein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEAQEGEEEQADVVEQHMEEGIKDMVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQARREAENALSQLESSSIKLSEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024385.1|WP_099528604.1|3371_3998_-|hypothetical-protein
MTLFLIINIVMISCGSGGPVPKEGQASKADGTVIDLVKVSKKIKDAVEFATSVKEIETLVKSVGEFAKGIGNKVTQNTGAIAADAGGNNNGQIVAGAYGLISNINTKVEVLGKKDGISSELRAQLDDVGKKGKAFLDKVKGDSDLCKKDVTDENAKKALDVNNATKDKGAKELVELNTAVDELLKAANDEVESAIKVLISPVKAATSG
>NZ_CP024385.1|WP_099528605.1|4151_5204_-|hypothetical-protein
MEKKSEIKNILIMMMIVLLMIGCGQQTDVASGGVGNSLSGAMMEMGRSAEKAFYAFIELMSDTLGFRVTKDTKKSDVASYFNNLGGKLGEASAELEKVSKKAANSSKSQEIRGAIDDAKATLSKLKGHVESLGQVGDSNVVGYANNVQGTGTAPDDVQLKEMFRALKGIVEIATDVGVKALEAGTTTLSIDNVDNKDGAKILATSGGNPTATDAGKAAIILAAVSGEEILKSIIESQESDAALSANADENTTSLKFAKGGSDAHLSNSANPKASAVAGGIALRSLVKTGKLGAGAAANNAGGEKEVQGVGVTAANKLLVAIEDIIKKTVKNILEKAKRKIDEARNPKTAE
>NZ_CP024385.1|WP_099528606.1|5434_6484_-|hypothetical-protein
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIEKTMLSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGEAIGNATSAGHGATPADKDSVISLVKGIKTIVGVVLKDNEGNAEATKTKDEQQKSIGNLFADSAGKDDAKEENIAKASASIGAVSGADILQAIAQSKENPAVDSTDGIEKAKDAAEIAIAPAVANKKEIKEASAKKDAVIAAGIALRAMAKDGKFAAKNEEKSAHAVNGAAASAVGKTLSTLIIAIRNTVDSGLKKINEALATVKQEDKSAEVINATESTS
>NZ_CP024385.1|WP_099528607.1|6630_7677_-|hypothetical-protein
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDVGKYFTDIEKTMTSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGSDAIGGAPTAGQDAAPAEAASVNALVKGIKTIVEVVLKDKGDATATKTKDDQQKTIGKLFEKKESGTEAEAAAASATIGAVSGADILQAIAKSSETADNNKNIEEASNAAEIAAVKKEDNKKEIKNAGAKKDAVIAGGIALRAMAKDGKFAAKNEDKSADSVNGVAASAVGKTLSTLIIAIRNTVDSGLKTINAALATVKQEDKTSEATNTAESTASVKN
>NZ_CP024385.1|WP_099528608.1|7824_8865_-|hypothetical-protein
MSKRKKVSAIIMTLFLIIGCNNGGGEIEKRNEFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSEIGQYFIDIEKTMISVKNKLNNVVAENSNYPKVKEVVDQFITGTLDKIAEGAKKAASGAVGSDAIGNTVKDQAAVPAEFKSVNALVKGIKEIVDVVLKQGDSDATKTEEAEKKSVGKLLGKKDDATEAVAAAASASIGAVSGADILQAIAKSGEAANNDVEIEKAKNAAEIAAAKKEDTKELTAVQKDAVIAAGIALRAIAKDGKFAANNDAKYANAVNGAAANAVGKTLSTLIIAIRNTVDSGLKTINAALATVKQEDKSSAAAGAIKTEKNNNKEV
>NZ_CP024385.1|WP_099528609.1|9018_10041_-|hypothetical-protein
MTLFLGFVSCNSSGTVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLGFNSNTKKSDVGAYFKKVHDTVEGTKTSLEKIVADMKTEGNPNAEATDTAVKKLVSETLIKITEGASEALKGAESDDPIGNVADQNGGAAGIGVDSLVKGIKGIVDVVLKGVGNADAGDDKKASDGSTARTANAADGEAGKLFASANAGDASNAKKSAADAAKAVGAVTGADILQAIIKDNGEAAKLAKETSGNVTVAPKDATIAGGIALRAMAKGGKFAGPSDNASVDAKKIVAGAAVSAVTKALDTLTIAIRKTIDLGLKEVQEAMKINASDTSVISDKKTSEAKSE
>NZ_CP024385.1|WP_099528610.1|10240_11290_-|hypothetical-protein
MTLFLIIGCNNGGGKIEKRNEFLTSMANLGKEFLDVFVTFGDMVTGAFGIKAETKKSDIGKYFTDIEKTMTSVKNKLNTVVAENSSYPKVQEVVNQFITGITGTLDKIAEGAKIAASGATDGASIGEVIKSNAGTSVDATSVNALVKGIKEIVDLVIKEGDGQADKTKPVDDDKKDIGRLFGAETTADSKGAEDKHVAAASASIGAVTGADILKAIAAANADAKKDGKVKDATDAAALALAKGTGTANDEKLTTAESKKDAVIAAGIALRAMAKDGKFIVKDTGANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDGGLKKINEVLATVKQEDKSVEATESVETEKKK
>NZ_CP024385.1|WP_099528611.1|11468_12092_-|hypothetical-protein
MTLFLIINIVMMSCGSGGPAPKDGQVAKADGTVIDLAKVSKKIKDASELMESVKEVETLVKSIDELVKAIGKKIDANGLAADANHNGSLIAGAYSVILAVDTKLGVLGTKAGLSNDLKAKVSATKTESTAFLTKIKGQNSDLGKDTASDEHVKNAIDKNDGTGGKGKEELVKLNTAMTDLTTAVKGELDTAISKLIAEPAKLAGGEN
>NZ_CP024385.1|WP_099528612.1|12281_13301_-|hypothetical-protein
MTLFLIIGCNNGGGEIEKRNEFLSSIANLGKGFLDVFVTFGDMITGAFDIKAETKKSEVGQYFTDIAETMESVKKKLQTEVAANGNYEKVKTVVEQFVTGTLDKIAAGAKEAAKGATGEDKIGGASTSGQDAAPGEAASVNSLVKGIKEIVGVVLKDNEGNAEATKTKDEQQKSIGKLFGGKTSDGTEQQAAAASASIGAVSGVDILQAIAKSGEAATGEIKIEEAKNAAEIAAAKKEDTKEIKNEAQKDAVIAGGIALRAMAKGGKFAAKENEEKSAHAVNGVAASAVGKTLSTLIIAVRNTVDSGLKTINEVLATVKQEDKSAEATKTAEAITSVKN

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024380.1	22781-22839	0	1.0

1. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to position: 22781-22839, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	0	1.0
NZ_CP024385_1	1.1|793|59|NZ_CP024385|CRISPRCasFinder	793-851	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	0	1.0

1. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

5. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

7. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

8. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

9. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

10. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

11. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

12. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

13. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

14. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

15. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

16. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

17. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

18. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

19. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

20. spacer 1.1|793|59|NZ_CP024385|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. NZ_CP024371

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	446050 : 455290	9	Streptococcus_phage(42.86%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP024371|446050:455290|DBSCAN-SWA
CTTAACTTTTAGACTTCCTGCTAACCAGAACTGTAAACTCTCCTTTATTTTTGTTATTCTCTTCAAAATATTTTTTCAATTCTAAAGGCTTGCCAATTTTATATTCTTCATATAATTTTGTCATCTCACGACCAACAAGAACATTAGCATCTAAATTCACTAAAGAAATTTCAAATAACAACTTTAAAATTCTATGATTGGACTCAAGAAGAACAAATGCATCACCTGTATGATAAAGTTCCTCAATCCTTTTTAATCTCTTAATGCCTTTGTTTGGCAAAAAACCTTCAAAGATTACAACCTTATCTTTAAAAGGATTAACACTAATAACTGTACTAAAAGAACTAACTCCTGGGATAGGACAAACTTTATACCCATTTTTGAATGCTGCATCAACAAGCAAACCACCGGGGTCACTAATACAAGGAGTGCCCGCATCACTAACAAAAGCTACGCTTTTTCCATTAGACAAATACTCTAACAATAAGCTAATTCTTCTATGCTCTATTACTGCATTACAAGAAATTAACTTTTTAGCAATACCATAATGAAATAAAAGTCTCTTAGTAATCCTTGTATCCTCAGCAAAAACAACATCAACCAACTTTAAAATATCAATTGCACGATATGTAATGTCACCTAAATTACCTATGGGGGTTCCCACAATATATAACACATAATCTCCTTAAAATTTTAAAATACAACTCATCCAAAATTGCATTAAACTTACTAATAAATAATATCCAACACTCAAATTTTTACACATTAAATCTGCAAGAAGAATCTCCATATAAATTAATTACTCTTGAAATATTTTATGATTTAAGAAAAAAGTTCAATTTTTACATCTTCACATGAGAAAATACTTATTTTATGTTATATTTATATTATTACTTAATTTCAATAACTGAAAGCTAAAAGGGGGTAAAGTTTTATGTTTAAGCTCATTAGAAAGATATTTGTAGTCTATTTTTTGTGCATCACACTCACTGGATTAGTCATGGTTTTCGTTGACAGTAAATTTTCCGAAAAGCAACCTAACCAAAATAGCAAAAGCCAAATTATCAAACATACAATCAACCCTGACTTAATTATGCTTGCATCTTCAATTGGAGGATTTTTAGGAGTTTATGCTGGAACATGGCTTTTTGATTATGGCAAAGACAATTTTTATTTAAGCTGGGGAAGCTTAATGGTATTAAGCTATAATATAGCTCTAATTCTTTCTGTATATTCCAAAACAAAAAGCAAATGAATATAATTTAGGTGTTACTTATAATAATTCCTCTTTTTATCAAGTACTTATAAACTTCCTCTGGATTTTCTAAACTTTCGATCAAATTTTCAGTTTTATCATTTATCTTATCCACAAGTCTTTTAAAACTCACCTTTATTCCTTTACTTTCCAAAAAATCCTTTGCTGATTGAGAAATAACACTTGCATGAACATTTTGAAGTCCAATATTGTAAATGATAACAGCAGCAGCCTTGCCTACAACTTTATCATAAATTTCTAAACCTTCCTTATTTTGAATGTATTTATTAATAAAATTATCAACCTCTAAGAGAGGTTTTAATCCTCTTTCCATATTAGAATAAAGTATTCTATGTTCTTTCAACAATCTTAACTTAGGATTTAATCCTGATATCATTTTTACGCCCTCTTAAATACGCCCTCTTAGAATTTATTAAATAAGAGTTGTTAACATTAATCATATACATAAATTCAAAATACTTCAATATAAAAAAATGATATATTATTAAATTGAATAATGATATATTATTAAATTGAATTATGCTAATTACTAAAGAAAATACCAGTTCAAAAATTGAAGTAAAAAAATCAATTTTCTTATCATATATTTTCCACGTAGAGAAAAAAGAAGATATAAACAAAATATTAAAAGAATATAAATTAAAATTTAAAAATGCAACTCATGTCGTTTACGGATTTAGAATTGGAAATTCAAATTCATTTATAAATGGAATGAGCGATGATAAAGAGCCAAGATCAACAGCAGGCAAACCTACACTAGATGCCATATTAAATAAAAATTTAACAGATACTTTAATCATTACGATACGCTATTTTGGAGGAACTCTGCTTGGGAAAAGTGGTTTAATCAAGGCATATTCTAAAGCAGCACAACAAGTAATCAGCGCATCAAATTTAATAGAAAAGGAAGAAATGCAAACATTAATTCTTAATTTAAATTACAATCAATATCATTTACTTACACGAATAAAAAACAAAATAGGAATTAAAATTATAGATGCAAATTTCCTAGATAAAATAAATACTACAATAAAATTTAACATAACAGATAAAAAGAGCATTATAACATTTCTACAAGAAAATTCCCTAATTTAATTAAATTTAAAATGCATATAGACATTTAGATAAGTTAAATGTCTATATGCATTTTACCACTTTTGGGAATAATTTTACATATATTATTACCATTTTCATTATTTATGTTTTACAATAGAATATTATTAATATGCAGAAGAGAAAACTTTTATGAAAATAATATCTATTATTAACCAAAAAGGCGGTGTTGGAAAAACAACTAGTGCTATAAATATTGCTTATTCAACCACATTGCTTAATAAAAAGACTCTTCTAATAGACATTGATTCACAAGGGAATACCAGTAGCGGAGTTAACATCCCAAAAAAAGAAGACACAAATTCAAGTTATGAACTTATTTATAAAAAACAAAAAATTAAACCTATTAAAAATTTCAATCTAGATATAATTCCTTCAAATCTTAAGTTAGCATTACTTGAGAAGGAATTAATACATGAAATTGCAAGAGAAAACTTTCTAAAAAATGCTTTAGAACAATATAAACAAGATGACTACGATTTCATTATACTTGACTGTCCCCCCACCCTTTCAATACTCACAATAAATGCACTTGTTGCAAGCAAATATCTTCTAATACCAATAGAAACAGAATTTTTCGCATTTGAGGGTATCAGTCAACTATTAGATACAATAACCACCGTTAAACAAATAAATCAAAATTTAGAGATCGCTGGTGTGTTCATAAACAAGTATGATATCAGAAATAAAAGCAAAGAAAAATATATTGATTATTTAAAAAAAGTATTCAAAGAAAAATTTTTAAATACTAAAATAAGAAAAAATATAAGCATTTCCAAATCTCAAGAAGAAAACATACCAGTACACATTTATAATAAAGAAAGTAATGCAGCAAAAGATTTTTTAGAGCTTACAAAAGAAATAATGGAGAAAATTAAAAAATAAAAATGTCAGACAGTCTAGACACTCTAATGGCTTTAATGGGCCAAAAGTTAAAAAAAAATGAAAAAGACAAACATATTTTAGCAAAGCAAGCATTAATTATCATTCAAAATAAAAGTTTTAAATATGAAAAATTAGATAAAGAAATAGCTGATTTCTTAAAAATGAAGCAATATGAAATTTTTAACATTTTTAACAACACATACACAGAAATTGGAAAAATACTAAAAGAAGCAAAAGAAAAACTAAGTGGCACTAATCAACACGACGGACTCTTTTATAAATGGTTCACTAGTATGGGATTTAAAAAGGATAAAGTTTACTCATTAATATCAAGATATAAGTTGCTTGTCGAAAATTCCGATAAGCAACTTATAATAGAAAATTTACCTCTGTCTCTCTCTTATGAAATTTCCAAAAAATCCTGTCCTACTCATTTAAAAATGAAAGTCCTTAATGGAAAAATAAAATCTTTAAAAGAATTTAAATTACTTCTTTATAAAAAAGATGAAAACTATGAAAAAAATTCTGAAATTAAATTTAATAAAACACAATTTACAAGAGAAGACATTATAAAAATAATAGAACTACTTCTACAAGAACTAAAAAATATTAAAAATATTAAACTAGACAAGATAGAAAATAAAAAAGAACTTTTTACTAATTTAAAAGAAATGCAACAAAAAATAAATCAGATGAAAAAAATCACTTAATACTTTCAAAGACAGAAATAATTCTTTTCAAATCAGAAGATGTAAAATAACTTATTTCTATCTTCCCTTTTTCTTTACTACCCTTAATACTTATTTTAGTTTGCATTCTACTTATTAAAAATTCTTTAACACTATTTAAAAAAGGATCTCTTAATATTTTAGATGTATCATTAACGGGCTTATAAAAATTTTTAACATAATTCTCTGCATCTCTAACAGACAACTTCTTTTTAATGATTAAAAGATACAGAGCATATCTATCTTGATTATCCTTCAAATATAACAAAACTTTAGCATGACCTAATGATATTTCTCTTTTATGTAAAGAATTTAATATCTCTTGCTCGAGTTCCAAAATTCGAACTAAATTAGCAATATGAGACCTGTTTTTCCCTATTCTTTCAGATAAAGCTTTTTGAGTCAAAGAATGCTTATCCATAAGATTTTTATAAGCATATGCCTCTTCAACAGGAGTTAAATTTTCTCTTTGAATATTTTCAATTAAAGACATAAAATCTTTATTTTTTCTAGTTGGCTCTATTTCTATAATAGGAACTTGTCTCATATCAGCAAGCTTAGCAGCTCTAAATCTTCGCTCACCTATTATTATGTTATATCTACCATCATTATGAAAAACAACAATAGGTTGTAATATTCCATTCTCTTTTATAGAGATACTCAATTCTTCAAGTTCAGCAAGATTAATAGACTTTCTAGGTTGTAACTTATCTATATCTAAAAGATTAATATCTACCATCTTAAAAGTCTCTTTCATTCTATTAAAGCCCTCCCTGTAATAATACAAAATTTTATAAAGTTGTTCTATGCCAACTTCTATTAAAGAAACAACACAAAAAAAAGAATGTTCCACGTGGAACATTCCAACAATATAATTAAACATTAACTTATTATTTGATAAATTTTGAAACAGAAACTAACTTATCCTCATCAAGAGATATCACCTGCATTCCTCTAGCATCTTTACCTTGTTCAGATATTTTATCAACCAATGTTCTTAAAACTTTTGAGGTTTCACTTATAAGTAAAACCTCATCATCATGTGAAACTGTAATAGCATCAACAACTTCACCTGCTTTCTCATCAGATTTCTTATAGCTAGTATAGCCAGTAGCTCCTCTTTTAAGTCCCGTCACTTTAGATATTTCTAATCTCTTACCATATCCATTTTCAGAAACAATCAAAAGATGAGATCCTTGTCCTACTACTAATGCCTTAATAAACACATCACCCTCTCTTACTTTCATACCAGACACACCTTGAGTGCCTCTATGTGTAAGCCTAATATCATTTGAATTAAACGCAAAAGCATTACCTTTTTTAGAAATACAAATAACTTTCTCGTCTTTAGAAACAATTTCAGCACTTGTAACAAAATCCTTATTATCAAGTTTAATGACAATAACACCCCTTGATTTAACCGTCTTAAAGCTTTCCGTTTCAATACGAGCTATTTTCCCTTTTGCAGTTGTTATTAATAAATAATTATTCACAGATAATTCATTGCTATTTTTAATAGCCAATATTCTTTCCATCTCTCCCAAATTAATAAGCTCACGAACATTTTGTCCCTTGGAAGTCCTAGAAGCATCCTTAATACTATAAGCATTAATTACATAAAGCTTCCCTTCATTTGAAATCATCAATAAAAAATCATGAGTATTTACACATAAAGCAATATTAACTTGGTCACCATCTTGCAACTCAAAAGAACCAAGACCCTTACCACCTATACCTTGAAGTTTATACTCATCCTGCAAAATTCTTTTAATAAAACCTTTTTTTGTAAGAATAACAATAACATTTTCTCTCTGCATTAAATCTGACATACTGGTTTTTAAAACCTCCTCATCATAAATTATTTTTGTTCGGCGCTCATCGCCAAATTTTAAACTTAAATTAATAATCTCTTCTCTTACGATATCTACAATTCTGACTGGACTAACAAGAATATCCTCATAATCTTTTATTAAAGCTAAGACAGTTGTAAAATCTTCTTCAAGTTTCTTTACCTCAAGAGAGGTTAACTTTTGTAACTTCATATCCAGAATAGAATTAGCTTGAACTTCTGACAAACTAAACTCCTTAATAATACGTTCCTTAGCATCTTTTACAAGCCTAGAAAATTTTAGTATTTCTATTATTCTATCAATATTTTTTAAGGCAATATTTAATCCTTCAAGAATATGTGCCTTTTCTCTTGCCTTCTTTAAGTCAAACTCTACCCGCCTCCTAACAATTTTCTTTCTATGCTTAATAAATTCAGATAAAAGCTCTTTCAAATTTAATTGCTTTGGAATTCCATTAACAAGAGCCAAGTTATTTATACTAAAATTTTTCCTCAATTCAGAATATTCGTAAAGCAAGTTCATAACAACATTAGGATCAAATCCTTTTTTAATTTCAAGAACAATTCTAATACCATCACGATCCGACTCATCCCTTATATCAGATATACCTTCCAGTTTTTCTTCTTTCATTAATAATGCTATTTTCATAAGCAAAGATGATTTGTTAACAGCATACGGTATCTGTGTAATTATAATAGAAAGATTATCCTCAGGTTTTTCCTCAATATGGTACCGAGCTCGAATAACAACACTGCCCTTTCCTGTCGTATAAGCCTTAATTAGGCTATCATTATAAACAATTTCAGCATAAGTAGGAAAATCTGGTCCTTTAACTATTTCAATTAAATCATAAATGGAAACATTATCATGATCCAACATATAAATTATGGCATCACAAATTTCCTTCAAATTGTGTGGAGCCATACTTGTTGCCATTCCAACAGCAATTCCACTAGAACCGTTTACCAATAGAAACGGAAAAGCAGCTGGCAAAACTTCAGGCTCAAACAAAGAATCATCATAATTAGGTCTAAAATCAACAGTTTGCTTATCTATATCTCTCACAAGCTCTTCAGCTATTCTGGCCATGCGAGCTTCAGTATATCTCATAGCAGCAGGAGGGTCACCATCAATAGAACCAAAATTTCCCTGTCCACTTACTACAGGATACCTTAAAGAAAAGTCTTGAGCAAGCCTTACAAGTGCTTCATAAATAGATTGATCACCATGAGGATGATATTTCCCAAGCACATCTCCAACAATTCTTCCAGCCTTCTTGAACGATTTTTCAGATTTAAGTCCCATTTCATGCATTGAATAAAGGATTCTTCTGTGGACAGGTTTAAGACCATCTCTAACATCAGGAAGAGCTCTTGAAACAATAACAGACATTGCATAATTTAAGTAAGAAGTTCTCACCTCATCTTCTATTTTTATATTTAATATTTGTTCTTTATTTTCTTCAATTGCCATTAATGCTCCAATCACACATCTAGATTTACTACATCAAGCGCGTTTTGCTCAATAAATTCTCTTCTAGGCTCAACTTCATCCCCCATAAGAGTAACAAAAATTTTCTCAGCCTGCACAGCATCATCTATGCCTATTAATTTCATCTTTCTAGTAGCAGGATTCATAGTAGTTTCCCAAAGTTGTGTAGGATTCATTTCTCCAAGACCCTTATACCTTTGAAGGCTAACTTTATCTCTCTTAAGAGTCTCAATTGACCCCAAAAAAGATTCCTTTTCCAAATCATTATAGAAGTAATGAACCTTACTGTCATATTTAACTTTATAGAGAGGTGGCATAGCTATGTATACATGCCCATTTTCAATTAACTCTCTCATATAACGAAAGAAAAAAGTAAGAAGTAATGTCCGAATATGAGATCCATCAACATCAGCATCAGCCATAATAATAATCTTATGATAACGAAGTTTTTCAATATAAAAAGTCTTTCCAACACCAGCCCCAAGAGACGCAATTATTGGAATAAGCTTATCATTTGTGATAACCTTATCTTCTCTTGTCTTCTCAACATTAAGCATCTTGCCCCATAATGGCAAAATAGCTTGAAAAAATCTATTTCTGCCCATCTTTGCGCTTCCCCCTGCAGAATCACCTTCAACAATATAAATTTCTCTCTCAACTGGATTCTTAGATGCACAATCTGCTAATTTTCCAGGCAATGCCAAGCTTTCAAAAGCACTTTTTTTCCTCTCAGACTCTCTAGCTTTCCTTGCCGCTTCACGAGCACGAGCAGCCTTTATTGCCTTATTAAGAATTACATCTATTTCTAAAAGATTATCACCAATAATTTTCAAAAGCCCATCACGTACAATATTTTCAACAATTTTTTTTACATAAGAATTTCCCAATTTTCCTTTAGTTTGACCTTCAAATTGAGGTTCTGGAACCTTAATAGAAATTACCGCTGTTAAACCCTCTTTAAAATCATCTAATGTAAGACTTGGAACATCTTTCTTGCTTATCTTTGACTCCCTAAAAGCTTCACTCATCGCCTTTAAAAGACCCTGCCTAAAACCAGAAACATGGGTTCCGCCCTCTCTAGTATTAATACTATTTGCAAAAGACAAAATATTTTCAGAATATCCCTCAGTCCACTTAAGACCAACATTAACAATAACATCATCACAAGAACCTTCAATAAAATAAGGTTCACTTTGAATATTTTTGTTATTACTTGTTATATAATCTACAAAAGCTTTTATTCCACCTTCAAAATAAAATTCTAAAAATCTCTCTTTCCCTAATCTTCTATCTTCTAGTAAGATTCGTATCTTATCATTTAAAAATGCAAGTTCTCTAAGTCTCTTTGATAAAGTTTCAAAATCATATTCCAAGGTTTCAAAAATCTCAGCATCAGCTGAAAAAGTAACTTTAGTCCCCCTATAAGAACTTGCCCCAATAACTTCAACCTCAGATGTTGGAATACCTCTTGAAAAAGTCTGCCTAAAGACCTTGCCATCTCTACTAACAATCACTTCTAAAAAAGATGATAATGCATTAACAACTGAAATTCCAACCCCATGAAGTCCACCAGAAACTTTATAAGTATTTTTATTAAATTTTCCTCCAGAATGGAGCTTAGTTAAAACAAGTTCAAGTGCACTAATCCCTTCTTCTTCATGAATATCTGTAGGAATCCCTCTACCGTTATCATTTACTGTTATGGAATTATCCTCATTTATAACAACATCTATTTTATCACAAAATCCCGCTAAAGCCTCGTCAATGCTATTGTCAACAACTTCATAAATCAAGTGATGCAACCCATTAATTGAAACAGATCCAATATACATACCGGGCCTTTTTCTAACAGCCTCAAGCCCCTTTAACACCTGAATATTACTAGCAAAATAACTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP024371|446050:455290|448570_449323_+|WP_025443732.1|DBSCAN-SWA
MKIISIINQKGGVGKTTSAINIAYSTTLLNKKTLLIDIDSQGNTSSGVNIPKKEDTNSSYELIYKKQKIKPIKNFNLDIIPSNLKLALLEKELIHEIARENFLKNALEQYKQDDYDFIILDCPPTLSILTINALVASKYLLIPIETEFFAFEGISQLLDTITTVKQINQNLEIAGVFINKYDIRNKSKEKYIDYLKKVFKEKFLNTKIRKNISISKSQEENIPVHIYNKESNAAKDFLELTKEIMEKIKK
>NZ_CP024371|446050:455290|449325_450033_+|WP_025443731.1|DBSCAN-SWA
MSDSLDTLMALMGQKLKKNEKDKHILAKQALIIIQNKSFKYEKLDKEIADFLKMKQYEIFNIFNNTYTEIGKILKEAKEKLSGTNQHDGLFYKWFTSMGFKKDKVYSLISRYKLLVENSDKQLIIENLPLSLSYEISKKSCPTHLKMKVLNGKIKSLKEFKLLLYKKDENYEKNSEIKFNKTQFTREDIIKIIELLLQELKNIKNIKLDKIENKKELFTNLKEMQQKINQMKKIT
>NZ_CP024371|446050:455290|450025_450838_-|WP_099497131.1|DBSCAN-SWA
MYYYREGFNRMKETFKMVDINLLDIDKLQPRKSINLAELEELSISIKENGILQPIVVFHNDGRYNIIIGERRFRAAKLADMRQVPIIEIEPTRKNKDFMSLIENIQRENLTPVEEAYAYKNLMDKHSLTQKALSERIGKNRSHIANLVRILELEQEILNSLHKREISLGHAKVLLYLKDNQDRYALYLLIIKKKLSVRDAENYVKNFYKPVNDTSKILRDPFLNSVKEFLISRMQTKISIKGSKEKGKIEISYFTSSDLKRIISVFESIK
>NZ_CP024371|446050:455290|447841_448420_+|WP_025443733.1|DBSCAN-SWA
MMLITKENTSSKIEVKKSIFLSYIFHVEKKEDINKILKEYKLKFKNATHVVYGFRIGNSNSFINGMSDDKEPRSTAGKPTLDAILNKNLTDTLIITIRYFGGTLLGKSGLIKAYSKAAQQVISASNLIEKEEMQTLILNLNYNQYHLLTRIKNKIGIKIIDANFLDKINTTIKFNITDKKSIITFLQENSLI
>NZ_CP024371|446050:455290|450941_453374_-|WP_025443729.1|DBSCAN-SWA
MAIEENKEQILNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSEKSFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPVVSGQGNFGSIDGDPPAAMRYTEARMARIAEELVRDIDKQTVDFRPNYDDSLFEPEVLPAAFPFLLVNGSSGIAVGMATSMAPHNLKEICDAIIYMLDHDNVSIYDLIEIVKGPDFPTYAEIVYNDSLIKAYTTGKGSVVIRARYHIEEKPEDNLSIIITQIPYAVNKSSLLMKIALLMKEEKLEGISDIRDESDRDGIRIVLEIKKGFDPNVVMNLLYEYSELRKNFSINNLALVNGIPKQLNLKELLSEFIKHRKKIVRRRVEFDLKKAREKAHILEGLNIALKNIDRIIEILKFSRLVKDAKERIIKEFSLSEVQANSILDMKLQKLTSLEVKKLEEDFTTVLALIKDYEDILVSPVRIVDIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKKGFIKRILQDEYKLQGIGGKGLGSFELQDGDQVNIALCVNTHDFLLMISNEGKLYVINAYSIKDASRTSKGQNVRELINLGEMERILAIKNSNELSVNNYLLITTAKGKIARIETESFKTVKSRGVIVIKLDNKDFVTSAEIVSKDEKVICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVREGDVFIKALVVGQGSHLLIVSENGYGKRLEISKVTGLKRGATGYTSYKKSDEKAGEVVDAITVSHDDEVLLISETSKVLRTLVDKISEQGKDARGMQVISLDEDKLVSVSKFIK
>NZ_CP024371|446050:455290|446050_446725_-|WP_025443736.1|DBSCAN-SWA
MLYIVGTPIGNLGDITYRAIDILKLVDVVFAEDTRITKRLLFHYGIAKKLISCNAVIEHRRISLLLEYLSNGKSVAFVSDAGTPCISDPGGLLVDAAFKNGYKVCPIPGVSSFSTVISVNPFKDKVVIFEGFLPNKGIKRLKRIEELYHTGDAFVLLESNHRILKLLFEISLVNLDANVLVGREMTKLYEEYKIGKPLELKKYFEENNKNKGEFTVLVSRKSKS
>NZ_CP024371|446050:455290|447311_447701_-|WP_025443734.1|DBSCAN-SWA
MISGLNPKLRLLKEHRILYSNMERGLKPLLEVDNFINKYIQNKEGLEIYDKVVGKAAAVIIYNIGLQNVHASVISQSAKDFLESKGIKVSFKRLVDKINDKTENLIESLENPEEVYKYLIKRGIIISNT
>NZ_CP024371|446050:455290|446983_447304_+|WP_025443735.1|DBSCAN-SWA
MFKLIRKIFVVYFLCITLTGLVMVFVDSKFSEKQPNQNSKSQIIKHTINPDLIMLASSIGGFLGVYAGTWLFDYGKDNFYLSWGSLMVLSYNIALILSVYSKTKSK
>NZ_CP024371|446050:455290|453385_455290_-|WP_025443728.1|DBSCAN-SWA
MSYFASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLIYEVVDNSIDEALAGFCDKIDVVINEDNSITVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKNTYKVSGGLHGVGISVVNALSSFLEVIVSRDGKVFRQTFSRGIPTSEVEVIGASSYRGTKVTFSADAEIFETLEYDFETLSKRLRELAFLNDKIRILLEDRRLGKERFLEFYFEGGIKAFVDYITSNNKNIQSEPYFIEGSCDDVIVNVGLKWTEGYSENILSFANSINTREGGTHVSGFRQGLLKAMSEAFRESKISKKDVPSLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVENIVRDGLLKIIGDNLLEIDVILNKAIKAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKVKYDSKVHYFYNDLEKESFLGSIETLKRDKVSLQRYKGLGEMNPTQLWETTMNPATRKMKLIGIDDAVQAEKIFVTLMGDEVEPRREFIEQNALDVVNLDV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025443736.1|446050_446725_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.1e-36	42.9
WP_025443735.1|446983_447304_+	hypothetical protein	NA	NA	NA	NA
WP_025443734.1|447311_447701_-	DUF1893 domain-containing protein	NA	NA	NA	NA
WP_025443733.1|447841_448420_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.6e-16	32.1
WP_025443732.1|448570_449323_+	ParA family protein	H7BUL8	unidentified_phage	8.1e-21	31.9
WP_025443731.1|449325_450033_+	hypothetical protein	A0A286QNA3	Streptococcus_phage	1.4e-11	34.1
WP_099497131.1|450025_450838_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	4.4e-12	33.1
WP_025443729.1|450941_453374_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.9e-104	33.2
WP_025443728.1|453385_455290_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	5.1e-136	44.0

4. NZ_CP024378

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024378_1

• CRISPR_ID: NZ_CP024378_1
• CRISPR_location: 22174-22256
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024378_1

Consensus_repeat	Method
TTATCAATTTTGTTATCAAGTGCTTTAAT	CRISPRCasFinder

spacers of NZ_CP024378_1

>1.1|22203|25|NZ_CP024378|CRISPRCasFinder
TTCGGCTCTTAATCCTGCATCTACT

CRISPR arrays and Neighbor proteins around NZ_CP024378_1

CRISPR arrays

The CRISPR arrays of NZ_CP024378_1

>merge|NZ_CP024378|1|22174-22256|CRISPRCasFinder
TTATCAATTTTGTTATCAAGTGCTTTAATTTCGGCTCTTAATCCTGCATCTACTTTATCAATTTTGTTATCAAGTTCTTTAAT

>NZ_CP024378|1|1|22174-22256|CRISPRCasFinder
TTATCAATTTTGTTATCAAGTGCTTTAAT	TTCGGCTCTTAATCCTGCATCTACT
TTATCAATTTTGTTATCAAGTTCTTTAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024378.1|WP_099528555.1|15300_15855_-|DUF764-family-protein	unknown	unknown	gnl|CDD|310276
NZ_CP024378.1|WP_099497184.1|19313_19877_-|DUF228-domain-containing-protein	unknown	unknown	gnl|CDD|281047
NZ_CP024378.1|WP_099498362.1|19889_20573_-|DUF1357-family-protein	unknown	unknown	gnl|CDD|284502
NZ_CP024378.1|WP_099528563.1|25490_26261_+|site-specific-integrase	unknown	unknown	gnl|CDD|271175
NZ_CP024378.1|WP_099497185.1|18566_19313_-|DUF228-domain-containing-protein	unknown	unknown	gnl|CDD|281047
NZ_CP024378.1|WP_099528560.1|22591_23944_-|PBSX-family-phage-terminase-large-subunit	unknown	unknown	gnl|CDD|273684
NZ_CP024378.1|WP_099528561.1|23947_24493_-|DUF603-domain-containing-protein	unknown	unknown	gnl|CDD|282496
NZ_CP024378.1|WP_099528558.1|20574_21786_-|DUF1073-domain-containing-protein	unknown	unknown	gnl|CDD|368870
NZ_CP024378.1|WP_099528557.1|16593_16983_-|DUF3890-domain-containing-protein	unknown	unknown	gnl|CDD|289775
NZ_CP024378.1|WP_157773715.1|28233_28386_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024378.1|WP_099528562.1|24638_25079_+|Mlp-family-lipoprotein	unknown	unknown	gnl|CDD|308750
NZ_CP024378.1|WP_099497190.1|15851_16229_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024378.1|WP_025444432.1|17969_18530_-|DUF228-domain-containing-protein	unknown	unknown	gnl|CDD|281047
NZ_CP024378.1|WP_099528564.1|26744_27560_-|DNA-adenine-methylase	unknown	unknown	gnl|CDD|223415
NZ_CP024378.1|WP_099498363.1|16994_17957_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024378.1|WP_099528566.1|28378_28606_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024378.1|WP_099528556.1|16219_16594_-|DUF1506-domain-containing-protein	unknown	unknown	gnl|CDD|284754
NZ_CP024378.1|WP_099528565.1|27556_27973_-|DUF261-family-protein	unknown	unknown	gnl|CDD|281224

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024378.1|WP_099528555.1|15300_15855_-|DUF764-family-protein	gnl|CDD|310276	pfam05561, DUF764, Borrelia burgdorferi protein of unknown function (DUF764). This family consists of proteins of unknown function from Borrelia burgdorferi (Lyme disease spirochete).	6.36112e-36
NZ_CP024378.1|WP_099497184.1|19313_19877_-|DUF228-domain-containing-protein	gnl|CDD|281047	pfam02989, DUF228, Lyme disease proteins of unknown function.	1.52661e-67
NZ_CP024378.1|WP_099498362.1|19889_20573_-|DUF1357-family-protein	gnl|CDD|284502	pfam07094, DUF1357, Protein of unknown function (DUF1357). This family consists of several hypothetical bacterial proteins of around 225 residues in length. Members of this family appear to be specific Borrelia burgdorferi (Lyme disease spirochete). The function of this family is unknown.	7.72121e-39
NZ_CP024378.1|WP_099528563.1|25490_26261_+|site-specific-integrase	gnl|CDD|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	0.00181364
NZ_CP024378.1|WP_099497185.1|18566_19313_-|DUF228-domain-containing-protein	gnl|CDD|281047	pfam02989, DUF228, Lyme disease proteins of unknown function.	1.76898e-44
NZ_CP024378.1|WP_099528560.1|22591_23944_-|PBSX-family-phage-terminase-large-subunit	gnl|CDD|273684	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. [Mobile and extrachromosomal element functions, Prophage functions].	7.51008e-41
NZ_CP024378.1|WP_099528561.1|23947_24493_-|DUF603-domain-containing-protein	gnl|CDD|282496	pfam04645, DUF603, Protein of unknown function, DUF603. This family includes several uncharacterized proteins from Borrelia species.	3.60849e-30
NZ_CP024378.1|WP_099528558.1|20574_21786_-|DUF1073-domain-containing-protein	gnl|CDD|368870	pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.	1.13986e-47
NZ_CP024378.1|WP_099528557.1|16593_16983_-|DUF3890-domain-containing-protein	gnl|CDD|289775	pfam13029, DUF3890, Domain of unknown function (DUF3890). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 70 amino acids in length.	3.93441e-05
NZ_CP024378.1|WP_099528562.1|24638_25079_+|Mlp-family-lipoprotein	gnl|CDD|308750	pfam03304, Mlp, Mlp lipoprotein family. The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species. This family were previously known as 2.9 lipoprotein genes. These surface expressed genes may represent new candidate vaccinogens for Lyme disease. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.	2.68638e-18
NZ_CP024378.1|WP_025444432.1|17969_18530_-|DUF228-domain-containing-protein	gnl|CDD|281047	pfam02989, DUF228, Lyme disease proteins of unknown function.	7.2116e-70
NZ_CP024378.1|WP_099528564.1|26744_27560_-|DNA-adenine-methylase	gnl|CDD|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	3.50125e-10
NZ_CP024378.1|WP_099528556.1|16219_16594_-|DUF1506-domain-containing-protein	gnl|CDD|284754	pfam07405, DUF1506, Protein of unknown function (DUF1506). This family consists of several bacterial proteins of around 130 residues in length. Members of this family seem to be specific to Borrelia burgdorferi (Lyme disease spirochete). The function of this family is unknown.	7.8547e-33
NZ_CP024378.1|WP_099528565.1|27556_27973_-|DUF261-family-protein	gnl|CDD|281224	pfam03196, DUF261, Protein of unknown function, DUF261.	3.72552e-52

Protein sequences

>NZ_CP024378.1|WP_099528558.1|20574_21786_-|DUF1073-domain-containing-protein
MSLRFKVNARDLYKYSIFFRNYIENVAEDVLKNGISLQSTSSSVTSMCEELDKLKLELKESLMQCIISCRFNGVGYILVKTADQKGDLHLEVNSELPIGFMYLDYSKVQDLGPESSHINYYLKSEAKDISSSGFTTLKIHKSRLIVYSNYDYILGAYSPCYSESFLLDVYLLEKIYQEIEKRIETHNFLFYKDESLSHIKDALSTAAMSKESKNRGNFFKEFFTSTKSKNENNDTSISNTDDELVSELARLKSNLDNNGIFYSCETDASMEVIKYDMNYLKEALALVKAKIGADTKEPLTRSFNEQVKGLGSDGKGDRSNYYDFLKSVQEKLEVAINSKLVKYFSLKMHFGSLIILGESEKIERDIKLLEMYEKYIFIMSTSNLSLDEKLNLKNKLFIKIGEE
>NZ_CP024378.1|WP_099498362.1|19889_20573_-|DUF1357-family-protein
MDMSEQINDSIDNKSTITVTNKTSDTLSINMSVSEYEDYKKYKEKQNRDSEAGNKALSINEHVSKELEEVQERAALQDRLLKEATRINEIDTLSSKYLSNHFNKDTLLAKGYSLDEILLAQSRELIRKYVSPEQIRAIAKVESTEHVEGKILEQLLDLAKVHIKQRQNNEGINSISSKNSNVKFKDQMSISNPNFRPINRNEFIEGMIQFYINQQKQYSKIINKLSA
>NZ_CP024378.1|WP_099497184.1|19313_19877_-|DUF228-domain-containing-protein
MSNNITQIRKDYEDKLKEIKALMKNPISDSSTFSNNTDFRDKHLHFSNSGGTSTTTNTVILNYPIKGYPYKRGVKLSFEGDYEPRVEAGGGDDLFGICVDIDDFTRTATVIPITEIFEGYLVVKKDNQSSISEGDKLAFNSNGEIEKASSSTNAKVNAIALSKAHKINENLYIIHVSVFGNRALKGS
>NZ_CP024378.1|WP_099497185.1|18566_19313_-|DUF228-domain-containing-protein
MSTLHKTSNPKDINETQDQIDFLTSLDIETLSTLDTLEDVESLREESNRAKRRGKRHTPSQVASLDTQYTEALLKLKQYTKTHRENKASFSAVKSGFQDKMQILDADALAISSSVDCIKKYPYKGYPYKRAVKLTVENGTVYVVADCDEEMYGICIDICEITHTATVIPITNNFEGYLAASDQSIKIADKLDFDSNGMLIKAGNGGKRMINAIALSDVFSIDLASDDATCKGQYVLHFVQVSVYGNRF
>NZ_CP024378.1|WP_025444432.1|17969_18530_-|DUF228-domain-containing-protein
MSSDITQLIKDYETKRDKLKGLMKNPSSYRATFSNNTDFRDKHLHFSNSGGTATSRKTKLENHPMKGYPYKRGVKRVVNPFVQGQPHFEPHVEAGGGDDLYGICIDVDDFTRTATVVPITEIFEGYLVAKDNSIKKNDKLKFNSDGQLEEANGSTNINAIAISDSIQLSNDLYMVEAISYGNKALN
>NZ_CP024378.1|WP_099498363.1|16994_17957_-|hypothetical-protein
MSDLFDLDYYSKEIASVINDISVPKFYKWLANEQFEYVNLKNGFVKTIKWDAFINKNPTSLVDELNAISTIGFRSETVMLNYLRLQYKFRHINQAEEDFYTNDGYIGNANNNLLPFREAYKLASDEIIKIIDHFILTGFISIRKDGKDQKVLLPNMHGLLNLPNQIKEDVEASNKDKMDKIFEKIEEGLSKLELGDEFSTPMMVLLDQKTSLKLIKPYGTDTRPSVSNEKWRDVLINTIKAMNNWQDVYLETSNLLKDQIIIYPLNPKLLKFKPSKYMLPTLNRQVDYDSSDIAHSYLDFVLGGLLATDKTVLQINIKQS
>NZ_CP024378.1|WP_099528557.1|16593_16983_-|DUF3890-domain-containing-protein
MSDSETDGFKAIYTNIKNLLGVSEVDLSFYMFKVQANLLEMIIETRGINLNTLNANQLSLLLFYHLGCHLKRCGVINEFVQIKKEKLGELEIDYYQQENCNGLDYCSSFENLVTQIKSGEHKTYSIGVV
>NZ_CP024378.1|WP_099528556.1|16219_16594_-|DUF1506-domain-containing-protein
MNLRNRLSSMAIRMIDKFSQDSLLKFYKGTHFRNEEFASIEIIFTKANYIEFSGIIIDITPSELALIEDSNLFDKGHLSKLYTYENLDFDLKDRVSLCEEYFEIVKIDSSAGYMALILRSISWT
>NZ_CP024378.1|WP_099497190.1|15851_16229_-|hypothetical-protein
MDIDIELEIGWFDLRANVARMHELGSDKLPIRKHLNEVASSSEFKEYINTPYLQNEFNKGIEVGMKAFGQLFINFYKDYIYANKIKPKLSPKTINAKRAKGRAHPTTPLIDTGLMLESIQARINS
>NZ_CP024378.1|WP_099528555.1|15300_15855_-|DUF764-family-protein
MILDIYTLQKYIISILQKFKEVAHEFDIQIINTYNHPYISKLTVEKCNILVIKFDNVDDLFKHNMRTGAFYDNVNELGVLFTLYFICFIQNDTDKNAYTRVLGLYSLFSDFLYSAKPYEFSIKNDEYTTLINMYIYNTSNLNQSGTLKLNSNHESLAYCASNSFKANVQIIETPTKDKGYLKER
>NZ_CP024378.1|WP_099528560.1|22591_23944_-|PBSX-family-phage-terminase-large-subunit
MDIYKSSLFIKHQKKYKHKYGIDIRDYIKPKSLGINFKEFEQTHLTPKQLEVLRSIEKYSQTKIILCGGIASGKTFLACYLFLKILLTSKNLYSQDTNNFILGNSQKSLELNVLGQFDKIASMLQIPFIPKYSNTSYFEVDSLRVNLYGGDKASDFERFRGSNSAIIYINEATTLHKETLIECLKRLRVGQQTIIFDTNPDHPEHYFKTDYINNTGTYATYNFTTYDNPLIPNNFIKTQEQLYKDQPTYKARVLLGEWVASHDTIFTNINLISNYEFKSPIAYLDPAYSIGGDNSALCVLERVENKYYAFIFQEKLPASDPRVLNTIKTILLNLNVHTLYIEDRDNTTGQGSVTKTFMSLRAHMNHYYRIAPIKPISNKFTRIATLIGPINSSNLSILDFSSKSAISDIYKYKGDGKGDDDSLDSLSALYMLLTLEKRTLKAHFTKIRLL
>NZ_CP024378.1|WP_099528561.1|23947_24493_-|DUF603-domain-containing-protein
MNRLKKIFDDYAIYFREGRLNDSQIAKEMGVSRVNVGKMRHKWESLQNNPNYTKNDAKITISEDTFNNMLARSLEAETQAHRLKSQVEIEKNKIALTFLTSFNQYCQLELQDDVTKANKLHNEILQYRQDTSNTDSNDFELSLRLSELKELEKNIETKRMDLCYKVLLKLKSVLDISKYKE
>NZ_CP024378.1|WP_099528562.1|24638_25079_+|Mlp-family-lipoprotein
MKKINVVLILSLLISSCDQNELINSSKETKSRGKRELREEQVEVKKTAEEALKEKLSEEEKANLDFLKEALGDENNFNKFLSHDESKIKGVLKHINDELAKCNGENANEQKGTFKQVLKGSFESNSNDLDQFKSQASSTCNAGAGS
>NZ_CP024378.1|WP_099528563.1|25490_26261_+|site-specific-integrase
MNKEDYLKKEINRLTKQNELLIKESQSYKQQLEQLKGKLDKKDTKPSKAKPVQFYLNDKTIRLVKRCIDKFKSIDPIAGWFVYILSITGCRGVELQNVKLTDISREIGSDGEVFYSLRVNVAKKRSNICIREVVISKSEFDSIMSVHKHYFDAKGKDSRRTYLFQKSKVKFKNNKINISEIGARFKELLKSYGFKERKSLHLCRNIFIATLKSRGYNSFEIKELMKYSSTSEIDNVYGLSSASKIQAYKDIKHSLK
>NZ_CP024378.1|WP_099528564.1|26744_27560_-|DNA-adenine-methylase
MKLLRREGDKYRYRERIINLFPRHTLYIEGFFGTGSIFFAKPLARYNILNDNSKFIYKFFYILRRDPALLYKRIREAIIYDRIINENQDKIEYMVLRSLYSIYATCSLTIGLRRSNAKRAFMDMIRTYKSKIKEMIECAVFTSRDIFNFLSVLAKSDKVSSTFVYLDPPYSISKGRLDDNKGWDLDSLETLIIEMKKYDWQFAISEFNDSEVLELLFKHNLYVNYIARSTGVASRFGHTKYEILGTSYKTNKSNIKKNHYVQLEMFSNYIT
>NZ_CP024378.1|WP_099528565.1|27556_27973_-|DUF261-family-protein
MNISQNDPKLKKEIQKFGCYLLCLHYYISKIKTLEFTIFDINDNYHKFINLGYIKSNCFILNPCKIFNHYGIKSDVRWEYKNYVSKLNEFEVSEVKTPRVPGSHFIATNNSILLYDSLRLKEKGTPYHTLSKRIFRKH
>NZ_CP024378.1|WP_157773715.1|28233_28386_-|hypothetical-protein
MSSKVISKTQIIEEMMCFKSSFEKVLYSKDYRLYWNGEEELATFTATDAK
>NZ_CP024378.1|WP_099528566.1|28378_28606_-|hypothetical-protein
MNILIASIWVGFMVILLVIGCSVLRFGLRYIKRIIRKSVYEYYLRRERLEALKLFARDLKELERYRIHNKEASIE

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024378_1	1.1|22203|25|NZ_CP024378|CRISPRCasFinder	22203-22227	25	NZ_CP024338	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3	5575-5599	0	1.0
NZ_CP024378_1	1.1|22203|25|NZ_CP024378|CRISPRCasFinder	22203-22227	25	NZ_CP024378	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence	22203-22227	0	1.0

1. spacer 1.1|22203|25|NZ_CP024378|CRISPRCasFinder matches to NZ_CP024338 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3) position: , mismatch: 0, identity: 1.0

ttcggctcttaatcctgcatctact	CRISPR spacer
ttcggctcttaatcctgcatctact	Protospacer
*************************

2. spacer 1.1|22203|25|NZ_CP024378|CRISPRCasFinder matches to NZ_CP024378 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence) position: , mismatch: 0, identity: 1.0

ttcggctcttaatcctgcatctact	CRISPR spacer
ttcggctcttaatcctgcatctact	Protospacer
*************************