CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024395	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-3, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024407	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp6, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024391	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	1 crisprs	NA	1	1	0	0
NZ_CP024405	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-12	0 crisprs	NA	0	0	0	0
NZ_CP024406	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-13	0 crisprs	NA	0	0	0	0
NZ_CP024390	Borrelia miyamotoi strain Izh-4 chromosome, complete genome	0 crisprs	NA	0	0	1	0
NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-1	0 crisprs	NA	0	0	0	0
NZ_CP024400	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-7	0 crisprs	NA	0	0	0	0
NZ_CP024402	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-9	0 crisprs	NA	0	0	0	0
NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-4	1 crisprs	NA	1	1	0	0
NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-11	0 crisprs	NA	0	0	0	0
NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	1 crisprs	NA	1	1	0	0
NZ_CP024398	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-5	0 crisprs	NA	0	0	0	0
NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	1 crisprs	NA	1	1	0	0
NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-8	0 crisprs	NA	0	0	0	0
NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	1 crisprs	NA	1	1	0	0
NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-6	0 crisprs	NA	0	0	0	0

1. NZ_CP024393

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024393_1

• CRISPR_ID: NZ_CP024393_1
• CRISPR_location: 38667-38781
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024393_1

Consensus_repeat	Method
GGTTGTAAATGGTGTTCAAGGAGATGAA	CRISPRCasFinder

spacers of NZ_CP024393_1

>1.1|38695|59|NZ_CP024393|CRISPRCasFinder
CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA

CRISPR arrays and Neighbor proteins around NZ_CP024393_1

CRISPR arrays

The CRISPR arrays of NZ_CP024393_1

>merge|NZ_CP024393|1|38667-38781|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAACCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGAGGTTGTAAATGTTGTTCAAGGAGATGAA

>NZ_CP024393|1|1|38667-38781|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAA	CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA
GGTTGTAAATGTTGTTCAAGGAGATGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024393.1|WP_051480327.1|25289_25772_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024393.1|WP_025444400.1|31898_32936_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024393.1|WP_025444399.1|33093_34125_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024393.1|WP_099498349.1|36539_37430_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP024393.1|WP_025444405.1|26268_27315_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024393.1|WP_099497174.1|30740_31757_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024393.1|WP_025444230.1|39521_40820_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024393.1|WP_051480340.1|28307_29348_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024393.1|WP_099498350.1|34324_35359_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024393.1|WP_099498348.1|35519_36173_+|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024393.1|WP_025444404.1|27468_28125_+|hypothetical-protein	unknown	unknown	gnl|CDD|366644

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024393.1|WP_025444400.1|31898_32936_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.54508e-60
NZ_CP024393.1|WP_025444399.1|33093_34125_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.22003e-63
NZ_CP024393.1|WP_025444405.1|26268_27315_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.85415e-61
NZ_CP024393.1|WP_099498348.1|35519_36173_+|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.43324e-56
NZ_CP024393.1|WP_051480340.1|28307_29348_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	7.77496e-63
NZ_CP024393.1|WP_099498350.1|34324_35359_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	5.79394e-60
NZ_CP024393.1|WP_099497174.1|30740_31757_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.84281e-65
NZ_CP024393.1|WP_025444404.1|27468_28125_+|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	8.77464e-52

Protein sequences

>NZ_CP024393.1|WP_099498349.1|36539_37430_+|hypothetical-protein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEEQADVVEQHMEEGIKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024393.1|WP_099498348.1|35519_36173_+|hypothetical-protein
MSKRKTLSAIKMTLFLIINIVMISCGNGGPAPKEGQAAKADGTVIDLVKVSKKIKDAVEFATSVKEVETLVKSVDELAKAIGKKIKNDGTLENETDKNGSLLAGAHSVILAVKTKVGALETTSGISNELKTKITDVKSKAEAFLGKLKDKSSDLGKNDVKDTDAKSAILTTDATKDKGAKELVELNTAVDELLKVANDEVESAIKVFISPVKAATSG
>NZ_CP024393.1|WP_099498350.1|34324_35359_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLRFNSNTKKSDVGAYFKKVHDTVEGTKKSLEKIVADMKTEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDASDPIGNVAVAAAGGGAGVAGTGVDSLVKGIKGIVDVVLKGVGNADAGDANKAEDGKTERTAAGDGEAGKLFATANAGDTADKAKKVAADAAKAVGAVTGADILQAIVKNGASAAADAAKAKAKDGIIAGAIALRAMAKGGKFANASAADNEGIVTSAVKGAALSAVTKALDTLTVAIRKTMDLGLKEVKDAMKINNAINANDTIVTSDKKTSEAKSE
>NZ_CP024393.1|WP_025444399.1|33093_34125_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDIGQYFIDIEKTMISVKEKLQAEVVKNGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGDAAIGNAVKDQAATHADATSVNALVKGIKEIVDVVLEKDEGNAEATKTADAEQKSIGKLLGKKDDGTEAHAAAASASIGAVTGADILQAIAKSGEAANNDVGIEQAKNAAEIAAAKKEDDKEFGIASAKKDAVIAGGIALRAMAKNGKFAAKNDDKSANAVKGAAASAVGKTLSTLIIAIRNTVDSGLKKINEALATVKQEDKSAEVINATESTS
>NZ_CP024393.1|WP_025444400.1|31898_32936_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANGNYEKVKTVVDKFITETLDKIASGAKEASKGATTDVAIGNAKKEEAAVAADTSSVNSLVKGIKAIVAVVLREGKADATKTAESEQKSIGKLFSSKKDDDGTEAQAAAASASIGAVSGADILQAIAKSGEATSEAKIETAKDAASIAAAKVEESKSLDVAKQDAVIAAGIALRAMAKDGKFTAKKDEEKSAHAVNGAAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024393.1|WP_099497174.1|30740_31757_+|hypothetical-protein
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGQYFTDIAETMESVKKKLQAEVAANGNYEKVKTVVDQFVTGTLDKIAAGAKEAAKGATGSDAIGGAPTTGQDPAPGEAASVNSLVKGIKTIVGVVLKANEGNATATKTAEDDKKDIGKLFEKKDSGTEAEAAKANASIGAVTGADILKAISKSGETADNSKNIEEAKDAASIASAKKEDNKKEIKDEAKKDAVIAAGIALRAMAKDGKFAVKSNEEKSAHAVNGVAASAVGKTLSTLIIAIRNTVDSGLRTINEALATVKQEDKSSEVTKTEEVRTNVKS
>NZ_CP024393.1|WP_051480340.1|28307_29348_+|Variable-large-protein-15/16
MLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFADIEKTMTSVKNKLNTVVAENSNYPKVKEVVDQFITGILDKIAKGAKIAASGATDGVSIGGVVKSDSAGNGPDTESMKNLVVGIKEIVDLVIKEGDGQADKTKPVDDDKKKIGKLFGAKTDANNGAEDKHVAAASASIGAVSGADILKAIAAANADAKKDGKVKDATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVKQEDKSVEVTNTAESTASVKNKEL
>NZ_CP024393.1|WP_025444404.1|27468_28125_+|hypothetical-protein
MKKRKTLSAIIMTLFLIINIVMMSCGSGGPAPKEGQVAKADGTVIDLAKVSKKIKDASELMESVKEVETLVKSIDELVKAIGKKIDANGLAADANHNGSLIAGAYSVILAVDTKLGVLGTKAGLSNDLKAKVSATKTESTAFLTKIKGQNSDLGKDTASDEHVKNAIDKNDGTGGKGKEELVKLNTAMTDLTTAVKGELDTAISKLIAEPAKLAGGEN
>NZ_CP024393.1|WP_025444405.1|26268_27315_+|Variable-large-protein-15/16
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIEKTMTSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGSDAIGGAPTAGQDAAPAEAASVNALVKGIKTIVEVVLKDKGDATATKTKDDQQKTIGKLFEKKESGTEAEAAAASATIGAVTGADILQAIAKSSETADNNKNIEEASNAAEIAAVKKEDNKKEIKNAGAKKDAVIAGGIALRAMAKDGKFAAKNEDKSADSVNGVAASAVGKTLSTLIIAIRNTVDSGLKTINAALATVKQEDKTSEATNTAESTASVKN
>NZ_CP024393.1|WP_051480327.1|25289_25772_-|hypothetical-protein
MLLFFLLAACSSLQQVEHDKITKKIRIYQYLSKNLELKGVVDYQNKTTEIFLYSKLKNHSIINQTPLTLPDGTTIEGKTSYEYDNGASAKNWINSSSFSLKKAMLEQMLNEDEYVYNKEEIKVQIGLETLKINKTKIRDFLLKLESTEKQHIQNTNNAEH
>NZ_CP024393.1|WP_025444230.1|39521_40820_-|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024399.1	21500-21558	0	1.0

1. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to position: 21500-21558, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	0	1.0
NZ_CP024393_1	1.1|38695|59|NZ_CP024393|CRISPRCasFinder	38695-38753	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	0	1.0

1. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

3. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

4. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

5. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

6. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

7. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

8. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

9. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

10. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

11. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

12. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

13. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

14. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

15. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

16. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

17. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

18. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

19. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

20. spacer 1.1|38695|59|NZ_CP024393|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. NZ_CP024396

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024396_1

• CRISPR_ID: NZ_CP024396_1
• CRISPR_location: 2413-2527
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024396_1

Consensus_repeat	Method
TTCATCTCCTTGAACAACATTTACAACC	CRISPRCasFinder

spacers of NZ_CP024396_1

>1.1|2441|59|NZ_CP024396|CRISPRCasFinder
TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG

CRISPR arrays and Neighbor proteins around NZ_CP024396_1

CRISPR arrays

The CRISPR arrays of NZ_CP024396_1

>merge|NZ_CP024396|1|2413-2527|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTGAACACCATTTACAACC

>NZ_CP024396|1|1|2413-2527|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTGAACACCATTTACAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024396.1|WP_025444235.1|7935_9006_-|Variable-large-protein-18	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_099498352.1|13368_13830_-|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024396.1|WP_025444237.1|11668_12730_-|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_099498351.1|12875_13286_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_025444234.1|5845_6886_-|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_025444230.1|373_1672_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP024396.1|WP_025444232.1|3763_4654_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024396.1|WP_025444483.1|17203_18274_-|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_099497170.1|10442_11516_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_099497295.1|15081_16125_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024396.1|WP_099497297.1|16421_16994_-|vsp-protein	unknown	unknown	gnl|CDD|366644

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024396.1|WP_025444235.1|7935_9006_-|Variable-large-protein-18	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.78447e-55
NZ_CP024396.1|WP_099498352.1|13368_13830_-|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.06778e-28
NZ_CP024396.1|WP_025444237.1|11668_12730_-|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.7131e-65
NZ_CP024396.1|WP_099498351.1|12875_13286_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.78048e-17
NZ_CP024396.1|WP_025444234.1|5845_6886_-|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.99194e-59
NZ_CP024396.1|WP_025444483.1|17203_18274_-|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.74369e-63
NZ_CP024396.1|WP_099497297.1|16421_16994_-|vsp-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	2.41839e-48
NZ_CP024396.1|WP_099497170.1|10442_11516_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.83588e-62
NZ_CP024396.1|WP_099497295.1|15081_16125_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.17064e-29

Protein sequences

>NZ_CP024396.1|WP_025444230.1|373_1672_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024396.1|WP_025444232.1|3763_4654_-|hypothetical-protein
MKKSILAVCMLVLLSLLSCDINALNEMLNKAREKYLEESKKVKGLNSKDGNQEGEEEQADVVEQHMEEGVKEVVQAVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFKDSEFVKLTEEQLRGLKSEYEQLESSFYSTLSEFRNKIGSYPRDNRRKRQEVTRFQRELNDRRFNVERLIIQVDSGLDELGSAELFFNKAKGTLKEGITERLRNKRRNYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024396.1|WP_025444234.1|5845_6886_-|Variable-large-protein-15/16
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVIFGDMITGAFGIKAETKKSEVGQYFTDIETTMKTVKDKLNDVVAKNGNYPKVKTAVDGFVAILDKIGNGAKKAAAGATGGAAIGEVVKSDAAGNGPDAGSVKNLVVGIKEIVDLVIKEGDGQADKTNPVDDDKKNIGKLFGAETSADKGAEDKHVAAASASIGAVSGADILKAIAAANADATKDGKVKDVKDAAGLALAKGTGTADDDKLTTAESKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVRQEDKSSEAIKTAEVTTSVKK
>NZ_CP024396.1|WP_025444235.1|7935_9006_-|Variable-large-protein-18
MEKRSERKNILIIMMIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSAENVFYAFMELVSDVLGFTAKTTTKKNDVGVYFNSLGVKLGEASKELEEVAKKAETGIDKNDSSKNLIKEAVEVTKKVLATLKGHLESLGQVGDSNLVGDAATDDKGVTAGTDALKGAFKALKGIIDIAEGAGVAKPKAGSTAVKLSNADNKDGAKILATDNKAGVNDVGKAAVILASVSGEEILASIVESTENKAVKISTNVTASTTPLEFALGGNGAHLAQDAALASAVSGGIALRSLVKDGKLASGAADGSAGGKEEVQKVGITAANKLLGAVEDIIKKTVKNILEKAKTKIDEARNSKTAE
>NZ_CP024396.1|WP_099497170.1|10442_11516_-|hypothetical-protein
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDVGKYFTDIETTMKAVKDKLNTVVAENSNYPKVKEVVDQFITGTLDKIAEGAKIAASGATDVASIGEVVKSDAAGNSPNAESVKNLVEGIKKIVALVITEGNGQADKTTPVDDDKKNIGKLFGAKNEASKGAEDKHVAAASASIGAVTGADILKAIAAANADAKKDGKVSEATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024396.1|WP_025444237.1|11668_12730_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKADTKKSDVGKYFTDIEKTMLSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGEAIGNATSAGHGATPADKDSVISLVKGIKTIVGVVLKDNEGNAEATKTKDEQQKSIGNLFADSAGKDDAKEENIAKASASIGAVSGADILQAIAQSKENPAVDSTDGIEKAKDAAEIAIAPAVANKKEIKEASAKKDAVIAAGIALRAMAKDGKFAAKNEEKSAHAVNGAAASAVGKTLSTLIIAIRNTVDSGLKTINETLATVKQEDKSAEATNTAESTASVKK
>NZ_CP024396.1|WP_099498351.1|12875_13286_-|hypothetical-protein
MDDLLIAAKKDGKVKDATDAAALALAKGTGTANDEKLTTAESKKDAVIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATNTAESTASAQQ
>NZ_CP024396.1|WP_099498352.1|13368_13830_-|hypothetical-protein
MTLFLIINIVMISCGSGGPAPKEGQAAKADGTVIDLAKVSKKIKDVVEFATSVKEIHTLVKSVDELAKAIGKKIKQNSEELEVDNGKNNKNGELVAGAFQVILTVKDKLEKLGNIPEISEELKGKVTDSKNKCKEFVDKVKADSDISKARGYR
>NZ_CP024396.1|WP_099497295.1|15081_16125_-|hypothetical-protein
MTLFLLFSCGGQLQAEKLAAENKNNFLDSLVKIGQGFQEIFGIFGNAIGDALGLTAVKSGDKRNKVGEHFKKIGNGLTETNNKLKELAGQMSEAKNADESTIKVVEDAIKGANEVFEKLVDAITKLAGVTNDSATDIGDTASAGAAVAADKNSVDTVIAEVKKILDAAEKSGVKVEKGNAGSPVAASNSTDATAVLAANAAAGANAGPKLADEVSKADPWAMIDKIKDSKTTAGNLSQNNHYDAGTLAVGTPNHANGAGAATNADLAAAVALKAMTTSGKLSATANEVVGVKAAGVSAVNKVLGVFDLIIRKTVARNLDKIREAVKEIQYSETTGTNTQDIQSTATK
>NZ_CP024396.1|WP_099497297.1|16421_16994_-|vsp-protein
MISCGSGGPAPKEGQAAKADGTVIDLAKISKKIKDAVEFAASVKEVETLVKSVDELAKAIGKKVEAGGTLGDDGGQNGSLISGAYSVVLSADAKLGQLENKEGISTELKAKVTAAKAASKKFLDTVKGANTDLGKKDASDENAKKALLKSDAAGDKGAKDLIALNTAIDELLKATEASIEAVIAELTTLG
>NZ_CP024396.1|WP_025444483.1|17203_18274_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLRKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANSNYEKVKTVVDQFITETLNKIAVGAKEAAKGATTDIAIGNATSNGHGASPAADKGSVISLVKGIKTIVDVALKDKGDAGATKTGDDKKDIGNLFADDAGKAEAKEENIAKAVASIGAVTGADVLQAIVQSNENPTANSTDGIEKAKDAAEIAIAPAVSNKKEIKEASAKKDAVIAAGIALRAMAKGGKFAANNNAKDADAVNGVAASVVGKTLSTLIIAVRNTVDSGLKTINEVLSTLKQEDKSAEVTKTAESTASVKNKEL

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024399.1	21500-21558	0	1.0

1. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to position: 21500-21558, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	0	1.0
NZ_CP024396_1	1.1|2441|59|NZ_CP024396|CRISPRCasFinder	2441-2499	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	0	1.0

1. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

5. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

7. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

8. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

9. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

10. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

11. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

12. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

13. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

14. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

15. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

16. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

17. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

18. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

19. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

20. spacer 1.1|2441|59|NZ_CP024396|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. NZ_CP024403

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024403_1

• CRISPR_ID: NZ_CP024403_1
• CRISPR_location: 10928-11042
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024403_1

Consensus_repeat	Method
GGTTGTAAATGGTGTTCAAGGAGATGAA	CRISPRCasFinder

spacers of NZ_CP024403_1

>1.1|10956|59|NZ_CP024403|CRISPRCasFinder
CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA

CRISPR arrays and Neighbor proteins around NZ_CP024403_1

CRISPR arrays

The CRISPR arrays of NZ_CP024403_1

>merge|NZ_CP024403|1|10928-11042|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAACCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGAGGTTGTAAATGTTGTTCAAGGAGATGAA

>NZ_CP024403|1|1|10928-11042|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAA	CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA
GGTTGTAAATGTTGTTCAAGGAGATGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024403.1|WP_099498349.1|8800_9691_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP024403.1|WP_099498383.1|6585_7620_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024403.1|WP_025444399.1|915_1947_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024403.1|WP_025444405.1|3315_4362_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024403.1|WP_025444404.1|4515_5172_+|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024403.1|WP_051480340.1|5354_6395_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024403.1|WP_025444230.1|11782_13081_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024403.1|WP_099498348.1|7780_8434_+|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024403.1|WP_099498382.1|0_758_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024403.1|WP_099498383.1|6585_7620_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	7.68039e-60
NZ_CP024403.1|WP_025444399.1|915_1947_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.22003e-63
NZ_CP024403.1|WP_025444405.1|3315_4362_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.85415e-61
NZ_CP024403.1|WP_025444404.1|4515_5172_+|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	8.77464e-52
NZ_CP024403.1|WP_051480340.1|5354_6395_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	7.77496e-63
NZ_CP024403.1|WP_099498348.1|7780_8434_+|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.43324e-56
NZ_CP024403.1|WP_099498382.1|0_758_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.89839e-34

Protein sequences

>NZ_CP024403.1|WP_099498349.1|8800_9691_+|hypothetical-protein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEEQADVVEQHMEEGIKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024403.1|WP_099498348.1|7780_8434_+|hypothetical-protein
MSKRKTLSAIKMTLFLIINIVMISCGNGGPAPKEGQAAKADGTVIDLVKVSKKIKDAVEFATSVKEVETLVKSVDELAKAIGKKIKNDGTLENETDKNGSLLAGAHSVILAVKTKVGALETTSGISNELKTKITDVKSKAEAFLGKLKDKSSDLGKNDVKDTDAKSAILTTDATKDKGAKELVELNTAVDELLKVANDEVESAIKVFISPVKAATSG
>NZ_CP024403.1|WP_099498383.1|6585_7620_+|hypothetical-protein
MTLFLGLASCNSSGTVAEESPQNRFLKSVISLGNDFLNVFTSFGDMVGGVLRFNSNTKKSDVGAYFKKVHDTVEGTKKSLEKIVADMKTEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDASDPIGNVAVAAAGGGAGVAGTGVDSLVKGIKGIVDVVLKGVGNADAGDANKAEDGKTERTAAGDGEAGKLFATANAGDTADKAKKVAADAAKAVGAVTGADILQAIVKNGASAAADAAKAKAKDGIIAGAIALRAMAKGGKFANASAADNEGIVTSAVKGAALSAVTKALDTLTVAIRKTMDLGLKEVKDAMKINNAINANDTIVTSDKKTSEAKSE
>NZ_CP024403.1|WP_051480340.1|5354_6395_+|Variable-large-protein-15/16
MLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFADIEKTMTSVKNKLNTVVAENSNYPKVKEVVDQFITGILDKIAKGAKIAASGATDGVSIGGVVKSDSAGNGPDTESMKNLVVGIKEIVDLVIKEGDGQADKTKPVDDDKKKIGKLFGAKTDANNGAEDKHVAAASASIGAVSGADILKAIAAANADAKKDGKVKDATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVKQEDKSVEVTNTAESTASVKNKEL
>NZ_CP024403.1|WP_025444404.1|4515_5172_+|hypothetical-protein
MKKRKTLSAIIMTLFLIINIVMMSCGSGGPAPKEGQVAKADGTVIDLAKVSKKIKDASELMESVKEVETLVKSIDELVKAIGKKIDANGLAADANHNGSLIAGAYSVILAVDTKLGVLGTKAGLSNDLKAKVSATKTESTAFLTKIKGQNSDLGKDTASDEHVKNAIDKNDGTGGKGKEELVKLNTAMTDLTTAVKGELDTAISKLIAEPAKLAGGEN
>NZ_CP024403.1|WP_025444405.1|3315_4362_+|Variable-large-protein-15/16
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIEKTMTSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGSDAIGGAPTAGQDAAPAEAASVNALVKGIKTIVEVVLKDKGDATATKTKDDQQKTIGKLFEKKESGTEAEAAAASATIGAVTGADILQAIAKSSETADNNKNIEEASNAAEIAAVKKEDNKKEIKNAGAKKDAVIAGGIALRAMAKDGKFAAKNEDKSADSVNGVAASAVGKTLSTLIIAIRNTVDSGLKTINAALATVKQEDKTSEATNTAESTASVKN
>NZ_CP024403.1|WP_025444399.1|915_1947_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDIGQYFIDIEKTMISVKEKLQAEVVKNGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGDAAIGNAVKDQAATHADATSVNALVKGIKEIVDVVLEKDEGNAEATKTADAEQKSIGKLLGKKDDGTEAHAAAASASIGAVTGADILQAIAKSGEAANNDVGIEQAKNAAEIAAAKKEDDKEFGIASAKKDAVIAGGIALRAMAKNGKFAAKNDDKSANAVKGAAASAVGKTLSTLIIAIRNTVDSGLKKINEALATVKQEDKSAEVINATESTS
>NZ_CP024403.1|WP_099498382.1|0_758_+|hypothetical-protein
GNYEKVKTVVDKFITETLDKIASGAKEASKGATTDVAIGNAKKEEAAVAADTSSVNSLVKGIKAIVAVVLREGKADATKTAESEQKSIGKLFSSKKDDDGTEAQAAAASASIGAVSGADILQAIAKSGEATSEAKIETAKDAASIAAAKVEESKSLDVAKQDAVIAAGIALRAMAKDGKFTAKKDEEKSAHAVNGAAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024403.1|WP_025444230.1|11782_13081_-|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024399.1	21500-21558	0	1.0

1. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to position: 21500-21558, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	0	1.0
NZ_CP024403_1	1.1|10956|59|NZ_CP024403|CRISPRCasFinder	10956-11014	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	0	1.0

1. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

3. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

4. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

5. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

6. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

7. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

8. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

9. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

10. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

11. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

12. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

13. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

14. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

15. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

16. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

17. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

18. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

19. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

20. spacer 1.1|10956|59|NZ_CP024403|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

4. NZ_CP024397

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024397_1

• CRISPR_ID: NZ_CP024397_1
• CRISPR_location: 25194-25308
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024397_1

Consensus_repeat	Method
GGTTGTAAATGGTGTTCAAGGAGATGAA	CRISPRCasFinder

spacers of NZ_CP024397_1

>1.1|25222|59|NZ_CP024397|CRISPRCasFinder
CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA

CRISPR arrays and Neighbor proteins around NZ_CP024397_1

CRISPR arrays

The CRISPR arrays of NZ_CP024397_1

>merge|NZ_CP024397|1|25194-25308|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAACCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGAGGTTGTAAATGTTGTTCAAGGAGATGAA

>NZ_CP024397|1|1|25194-25308|CRISPRCasFinder
GGTTGTAAATGGTGTTCAAGGAGATGAA	CCAGCAGTCAAAGAAGAGTCTGTTAGAAAAGAAGTAATAGAAGATGATGATTCAAAAGA
GGTTGTAAATGTTGTTCAAGGAGATGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024397.1|WP_025444404.1|13995_14652_+|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024397.1|WP_025444405.1|12795_13842_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024397.1|WP_025444400.1|18425_19463_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024397.1|WP_099498350.1|20851_21886_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024397.1|WP_099498349.1|23066_23957_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP024397.1|WP_099498348.1|22046_22700_+|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024397.1|WP_099497174.1|17267_18284_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024397.1|WP_025444399.1|19620_20652_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024397.1|WP_025444230.1|26048_27347_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024397.1|WP_051480340.1|14834_15875_+|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024397.1|WP_099497172.1|11617_12637_+|hypothetical-protein	unknown	unknown	gnl|CDD|376417

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024397.1|WP_025444404.1|13995_14652_+|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	8.77464e-52
NZ_CP024397.1|WP_025444405.1|12795_13842_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	4.85415e-61
NZ_CP024397.1|WP_025444399.1|19620_20652_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.22003e-63
NZ_CP024397.1|WP_099498350.1|20851_21886_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	5.79394e-60
NZ_CP024397.1|WP_099498348.1|22046_22700_+|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.43324e-56
NZ_CP024397.1|WP_099497174.1|17267_18284_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.84281e-65
NZ_CP024397.1|WP_051480340.1|14834_15875_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	7.77496e-63
NZ_CP024397.1|WP_025444400.1|18425_19463_+|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.54508e-60
NZ_CP024397.1|WP_099497172.1|11617_12637_+|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.82176e-68

Protein sequences

>NZ_CP024397.1|WP_099498349.1|23066_23957_+|hypothetical-protein
MKKNILAVCILILLSLLSCDINALNEMLNKAREKYLEESKKVKSLNSKDGNQEGEEEQADVVEQHMEEGIKDVVQGVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFQDSEFVKLTEKQLLGLESEDEQLESSFYSTLSELQNKIGSYPRKDKTERQKLIQLLNQLNKERSHVDMFRIQVDSGLYEIASSKSFFEKSQDTLKEAIIKRLKNKRRSYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024397.1|WP_099498348.1|22046_22700_+|hypothetical-protein
MSKRKTLSAIKMTLFLIINIVMISCGNGGPAPKEGQAAKADGTVIDLVKVSKKIKDAVEFATSVKEVETLVKSVDELAKAIGKKIKNDGTLENETDKNGSLLAGAHSVILAVKTKVGALETTSGISNELKTKITDVKSKAEAFLGKLKDKSSDLGKNDVKDTDAKSAILTTDATKDKGAKELVELNTAVDELLKVANDEVESAIKVFISPVKAATSG
>NZ_CP024397.1|WP_099498350.1|20851_21886_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLRFNSNTKKSDVGAYFKKVHDTVEGTKKSLEKIVADMKTEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDASDPIGNVAVAAAGGGAGVAGTGVDSLVKGIKGIVDVVLKGVGNADAGDANKAEDGKTERTAAGDGEAGKLFATANAGDTADKAKKVAADAAKAVGAVTGADILQAIVKNGASAAADAAKAKAKDGIIAGAIALRAMAKGGKFANASAADNEGIVTSAVKGAALSAVTKALDTLTVAIRKTMDLGLKEVKDAMKINNAINANDTIVTSDKKTSEAKSE
>NZ_CP024397.1|WP_025444399.1|19620_20652_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDIGQYFIDIEKTMISVKEKLQAEVVKNGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGDAAIGNAVKDQAATHADATSVNALVKGIKEIVDVVLEKDEGNAEATKTADAEQKSIGKLLGKKDDGTEAHAAAASASIGAVTGADILQAIAKSGEAANNDVGIEQAKNAAEIAAAKKEDDKEFGIASAKKDAVIAGGIALRAMAKNGKFAAKNDDKSANAVKGAAASAVGKTLSTLIIAIRNTVDSGLKKINEALATVKQEDKSAEVINATESTS
>NZ_CP024397.1|WP_025444400.1|18425_19463_+|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANGNYEKVKTVVDKFITETLDKIASGAKEASKGATTDVAIGNAKKEEAAVAADTSSVNSLVKGIKAIVAVVLREGKADATKTAESEQKSIGKLFSSKKDDDGTEAQAAAASASIGAVSGADILQAIAKSGEATSEAKIETAKDAASIAAAKVEESKSLDVAKQDAVIAAGIALRAMAKDGKFTAKKDEEKSAHAVNGAAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024397.1|WP_099497174.1|17267_18284_+|hypothetical-protein
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGQYFTDIAETMESVKKKLQAEVAANGNYEKVKTVVDQFVTGTLDKIAAGAKEAAKGATGSDAIGGAPTTGQDPAPGEAASVNSLVKGIKTIVGVVLKANEGNATATKTAEDDKKDIGKLFEKKDSGTEAEAAKANASIGAVTGADILKAISKSGETADNSKNIEEAKDAASIASAKKEDNKKEIKDEAKKDAVIAAGIALRAMAKDGKFAVKSNEEKSAHAVNGVAASAVGKTLSTLIIAIRNTVDSGLRTINEALATVKQEDKSSEVTKTEEVRTNVKS
>NZ_CP024397.1|WP_051480340.1|14834_15875_+|Variable-large-protein-15/16
MLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFADIEKTMTSVKNKLNTVVAENSNYPKVKEVVDQFITGILDKIAKGAKIAASGATDGVSIGGVVKSDSAGNGPDTESMKNLVVGIKEIVDLVIKEGDGQADKTKPVDDDKKKIGKLFGAKTDANNGAEDKHVAAASASIGAVSGADILKAIAAANADAKKDGKVKDATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVKQEDKSVEVTNTAESTASVKNKEL
>NZ_CP024397.1|WP_025444404.1|13995_14652_+|hypothetical-protein
MKKRKTLSAIIMTLFLIINIVMMSCGSGGPAPKEGQVAKADGTVIDLAKVSKKIKDASELMESVKEVETLVKSIDELVKAIGKKIDANGLAADANHNGSLIAGAYSVILAVDTKLGVLGTKAGLSNDLKAKVSATKTESTAFLTKIKGQNSDLGKDTASDEHVKNAIDKNDGTGGKGKEELVKLNTAMTDLTTAVKGELDTAISKLIAEPAKLAGGEN
>NZ_CP024397.1|WP_025444405.1|12795_13842_+|Variable-large-protein-15/16
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIEKTMTSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGSDAIGGAPTAGQDAAPAEAASVNALVKGIKTIVEVVLKDKGDATATKTKDDQQKTIGKLFEKKESGTEAEAAAASATIGAVTGADILQAIAKSSETADNNKNIEEASNAAEIAAVKKEDNKKEIKNAGAKKDAVIAGGIALRAMAKDGKFAAKNEDKSADSVNGVAASAVGKTLSTLIIAIRNTVDSGLKTINAALATVKQEDKTSEATNTAESTASVKN
>NZ_CP024397.1|WP_099497172.1|11617_12637_+|hypothetical-protein
MTLFLGLVSCNSSATVAEESPQSRFLKSVISLGNDFLNVFTSFGDMVGGVLGFNTNTKKSDVGAYFKKIHDTVEGTKIALEKIVSDMRSEGNPNAEATDTAVKKLVSETLSKIIEGAKTASEAIGDAGDPIGNIATDNNGGAVGTGVDGLIKGIKSIVDVVLSAKEGNAEAGDNKKAEDGNSARNNDGAGKLFDGSTGAAADDKKAAADAAKAVGAVTGADILKAMVKDNGDAAKLAKNSAGIAASGVAAPKDAVMAGGIALRAIAKGGKFANGNNAADAKKIVEGVAVSAVTKALDTLTIAIRKTIDLGLKEVQEAMKINASDTPVISDKKTSEAKSE
>NZ_CP024397.1|WP_025444230.1|26048_27347_-|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024399.1	21500-21558	0	1.0

1. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to position: 21500-21558, mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	0	1.0
NZ_CP024397_1	1.1|25222|59|NZ_CP024397|CRISPRCasFinder	25222-25280	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	0	1.0

1. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

2. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

3. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

4. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

5. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

6. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

7. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

8. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

9. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

10. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

11. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

12. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

13. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

14. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

15. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

16. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

17. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

18. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

19. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

20. spacer 1.1|25222|59|NZ_CP024397|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	CRISPR spacer
ccagcagtcaaagaagagtctgttagaaaagaagtaatagaagatgatgattcaaaaga	Protospacer
***********************************************************

5. NZ_CP024394

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024394_1

• CRISPR_ID: NZ_CP024394_1
• CRISPR_location: 2364-2478
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP024394_1

Consensus_repeat	Method
TTCATCTCCTTGAACAACATTTACAACC	CRISPRCasFinder

spacers of NZ_CP024394_1

>1.1|2392|59|NZ_CP024394|CRISPRCasFinder
TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG

CRISPR arrays and Neighbor proteins around NZ_CP024394_1

CRISPR arrays

The CRISPR arrays of NZ_CP024394_1

>merge|NZ_CP024394|1|2364-2478|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACCTCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGGTTCATCTCCTTGAACACCATTTACAACC

>NZ_CP024394|1|1|2364-2478|CRISPRCasFinder
TTCATCTCCTTGAACAACATTTACAACC	TCTTTTGAATCATCATCTTCTATTACTTCTTTTCTAACAGACTCTTCTTTGACTGCTGG
TTCATCTCCTTGAACACCATTTACAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024394.1|WP_025444237.1|11619_12681_-|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024394.1|WP_099498352.1|13319_13781_-|hypothetical-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024394.1|WP_025444234.1|5796_6837_-|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024394.1|WP_025444483.1|17154_18225_-|Variable-large-protein-15/16	unknown	unknown	gnl|CDD|376417
NZ_CP024394.1|WP_099497170.1|10393_11467_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024394.1|WP_099497295.1|15032_16076_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417
NZ_CP024394.1|WP_025444230.1|324_1623_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP024394.1|WP_025444232.1|3714_4605_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP024394.1|WP_025444235.1|7886_8957_-|Variable-large-protein-18	unknown	unknown	gnl|CDD|376417
NZ_CP024394.1|WP_099497297.1|16372_16945_-|vsp-protein	unknown	unknown	gnl|CDD|366644
NZ_CP024394.1|WP_099498351.1|12826_13237_-|hypothetical-protein	unknown	unknown	gnl|CDD|376417

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP024394.1|WP_025444237.1|11619_12681_-|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.7131e-65
NZ_CP024394.1|WP_025444234.1|5796_6837_-|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.99194e-59
NZ_CP024394.1|WP_025444483.1|17154_18225_-|Variable-large-protein-15/16	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.74369e-63
NZ_CP024394.1|WP_099497170.1|10393_11467_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.83588e-62
NZ_CP024394.1|WP_099497295.1|15032_16076_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.17064e-29
NZ_CP024394.1|WP_099498352.1|13319_13781_-|hypothetical-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	1.06778e-28
NZ_CP024394.1|WP_025444235.1|7886_8957_-|Variable-large-protein-18	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	6.78447e-55
NZ_CP024394.1|WP_099497297.1|16372_16945_-|vsp-protein	gnl|CDD|366644	pfam01441, Lipoprotein_6, Lipoprotein. Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens.	2.41839e-48
NZ_CP024394.1|WP_099498351.1|12826_13237_-|hypothetical-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	9.78048e-17

Protein sequences

>NZ_CP024394.1|WP_025444230.1|324_1623_+|hypothetical-protein
MIFKNKYLALTLLLSLVGCKFFITEEESQKKFSRTLDKVNSMILNASETAMKNIFSDNQHSEIHLSKINSTNKKDISPKQPESQKDILVSASSMPKKEEFSSTKHKDITITTAYTSQNKSYSNSNIIIDNASITTSNTDANTVIQETDINTLPTKTDLTHTTAYNISTLDDNTIYSSDNNSSHQNSEITEYQSNNNILIRGHNKIPLNALNGESHNIQYGYTYNSHDDSTPIISGSYSNSSMTVEEDEFDKNDDEDSKLETRLDNQYKFKLKNITDSVEQALKIAKQIKDDLDIIEFHRIKLSNHYGIRAEEHEKQTAREELSKFSKDKLEADLKKLLSEIEKSLNAATILITYNDYGGNLQSDLSAKTTLEALKTEVSSLITKIQDFNNKDHQAYPTSYYNDYQTYQALRNPYSKLTLVKDLLTRTGIVAR
>NZ_CP024394.1|WP_025444232.1|3714_4605_-|hypothetical-protein
MKKSILAVCMLVLLSLLSCDINALNEMLNKAREKYLEESKKVKGLNSKDGNQEGEEEQADVVEQHMEEGVKEVVQAVPVDMNNEEIPVILSSPYYPNQEEIKIKEEDLVPSTNEEKEAQKEIEKAERVFKDSEFVKLTEEQLRGLKSEYEQLESSFYSTLSEFRNKIGSYPRDNRRKRQEVTRFQRELNDRRFNVERLIIQVDSGLDELGSAELFFNKAKGTLKEGITERLRNKRRNYWSRKVDSDLIARQALREAENALSQLESSSIKLIEAMGIKKEIEALIEEARSVLENLER
>NZ_CP024394.1|WP_025444234.1|5796_6837_-|Variable-large-protein-15/16
MTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVIFGDMITGAFGIKAETKKSEVGQYFTDIETTMKTVKDKLNDVVAKNGNYPKVKTAVDGFVAILDKIGNGAKKAAAGATGGAAIGEVVKSDAAGNGPDAGSVKNLVVGIKEIVDLVIKEGDGQADKTNPVDDDKKNIGKLFGAETSADKGAEDKHVAAASASIGAVSGADILKAIAAANADATKDGKVKDVKDAAGLALAKGTGTADDDKLTTAESKKDAIIAAGIALRAMAKDGKFIVKDTAANKTEAESAKGVAASAVGKTLSTLIIAIRNTVDSGLKTINEVLATVRQEDKSSEAIKTAEVTTSVKK
>NZ_CP024394.1|WP_025444235.1|7886_8957_-|Variable-large-protein-18
MEKRSERKNILIIMMIVLLMIGCGQQTEGNSAASGGVGSGLSGAMMEVGRSAENVFYAFMELVSDVLGFTAKTTTKKNDVGVYFNSLGVKLGEASKELEEVAKKAETGIDKNDSSKNLIKEAVEVTKKVLATLKGHLESLGQVGDSNLVGDAATDDKGVTAGTDALKGAFKALKGIIDIAEGAGVAKPKAGSTAVKLSNADNKDGAKILATDNKAGVNDVGKAAVILASVSGEEILASIVESTENKAVKISTNVTASTTPLEFALGGNGAHLAQDAALASAVSGGIALRSLVKDGKLASGAADGSAGGKEEVQKVGITAANKLLGAVEDIIKKTVKNILEKAKTKIDEARNSKTAE
>NZ_CP024394.1|WP_099497170.1|10393_11467_-|hypothetical-protein
MKKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMVTGAFGIKAETKKSDVGKYFTDIETTMKAVKDKLNTVVAENSNYPKVKEVVDQFITGTLDKIAEGAKIAASGATDVASIGEVVKSDAAGNSPNAESVKNLVEGIKKIVALVITEGNGQADKTTPVDDDKKNIGKLFGAKNEASKGAEDKHVAAASASIGAVTGADILKAIAAANADAKKDGKVSEATDAAALALAKGTSTDNEDQLGDSAKKDAIIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATKTAESTASAQQ
>NZ_CP024394.1|WP_025444237.1|11619_12681_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLGKGFLDVFVTFGDMITGAFGIKADTKKSDVGKYFTDIEKTMLSVKEKLQAEVAANGNYEKVKTVVDQFITGTLDKIAAGAKEAAKGATGEAIGNATSAGHGATPADKDSVISLVKGIKTIVGVVLKDNEGNAEATKTKDEQQKSIGNLFADSAGKDDAKEENIAKASASIGAVSGADILQAIAQSKENPAVDSTDGIEKAKDAAEIAIAPAVANKKEIKEASAKKDAVIAAGIALRAMAKDGKFAAKNEEKSAHAVNGAAASAVGKTLSTLIIAIRNTVDSGLKTINETLATVKQEDKSAEATNTAESTASVKK
>NZ_CP024394.1|WP_099498351.1|12826_13237_-|hypothetical-protein
MDDLLIAAKKDGKVKDATDAAALALAKGTGTANDEKLTTAESKKDAVIAAGIALRAMAKDGKFIVKDTAEKKTEAESAKGVAASAVGKTLSTLIIAIRDTVDSGLKKINEALATVKQEDKSAEATNTAESTASAQQ
>NZ_CP024394.1|WP_099498352.1|13319_13781_-|hypothetical-protein
MTLFLIINIVMISCGSGGPAPKEGQAAKADGTVIDLAKVSKKIKDVVEFATSVKEIHTLVKSVDELAKAIGKKIKQNSEELEVDNGKNNKNGELVAGAFQVILTVKDKLEKLGNIPEISEELKGKVTDSKNKCKEFVDKVKADSDISKARGYR
>NZ_CP024394.1|WP_099497295.1|15032_16076_-|hypothetical-protein
MTLFLLFSCGGQLQAEKLAAENKNNFLDSLVKIGQGFQEIFGIFGNAIGDALGLTAVKSGDKRNKVGEHFKKIGNGLTETNNKLKELAGQMSEAKNADESTIKVVEDAIKGANEVFEKLVDAITKLAGVTNDSATDIGDTASAGAAVAADKNSVDTVIAEVKKILDAAEKSGVKVEKGNAGSPVAASNSTDATAVLAANAAAGANAGPKLADEVSKADPWAMIDKIKDSKTTAGNLSQNNHYDAGTLAVGTPNHANGAGAATNADLAAAVALKAMTTSGKLSATANEVVGVKAAGVSAVNKVLGVFDLIIRKTVARNLDKIREAVKEIQYSETTGTNTQDIQSTATK
>NZ_CP024394.1|WP_099497297.1|16372_16945_-|vsp-protein
MISCGSGGPAPKEGQAAKADGTVIDLAKISKKIKDAVEFAASVKEVETLVKSVDELAKAIGKKVEAGGTLGDDGGQNGSLISGAYSVVLSADAKLGQLENKEGISTELKAKVTAAKAASKKFLDTVKGANTDLGKKDASDENAKKALLKSDAAGDKGAKDLIALNTAIDELLKATEASIEAVIAELTTLG
>NZ_CP024394.1|WP_025444483.1|17154_18225_-|Variable-large-protein-15/16
MSKRKTLSAIIMTLFLIIGCNNGGGEDPQKVFLTSIANLRKGFLDVFVTFGDMITGAFGIKAETKKSDVGKYFTDIAETMESVKKKLQAEVAANSNYEKVKTVVDQFITETLNKIAVGAKEAAKGATTDIAIGNATSNGHGASPAADKGSVISLVKGIKTIVDVALKDKGDAGATKTGDDKKDIGNLFADDAGKAEAKEENIAKAVASIGAVTGADVLQAIVQSNENPTANSTDGIEKAKDAAEIAIAPAVSNKKEIKEASAKKDAVIAAGIALRAMAKGGKFAANNNAKDADAVNGVAASVVGKTLSTLIIAVRNTVDSGLKTINEVLSTLKQEDKSAEVTKTAESTASVKNKEL

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024399.1	21500-21558	0	1.0

1. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to position: 21500-21558, mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	2392-2450	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024319	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence	2348-2406	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	2441-2499	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	2391-2449	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	1699-1757	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	2486-2544	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024354	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence	2439-2497	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	2448-2506	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	20919-20977	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024362	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence	16099-16157	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024385	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10	793-851	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024403	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10	10956-11014	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	21493-21551	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024393	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence	38695-38753	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024397	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence	25222-25280	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024208	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence	37689-37747	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024216	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence	20606-20664	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024355	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence	37689-37747	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	21519-21577	0	1.0
NZ_CP024394_1	1.1|2392|59|NZ_CP024394|CRISPRCasFinder	2392-2450	59	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	22781-22839	0	1.0

1. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

2. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

3. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

4. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

5. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

7. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

8. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

9. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

10. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

11. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024385 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

12. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024403 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-10) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

13. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

14. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024393 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

15. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

16. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024208 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp41, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

17. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

18. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024355 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

19. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

20. spacer 1.1|2392|59|NZ_CP024394|CRISPRCasFinder matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 0, identity: 1.0

tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	CRISPR spacer
tcttttgaatcatcatcttctattacttcttttctaacagactcttctttgactgctgg	Protospacer
***********************************************************

6. NZ_CP024399

7. NZ_CP024390

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	451035 : 460275	9	Streptococcus_phage(42.86%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP024390|451035:460275|DBSCAN-SWA
TATGAGTTATTTTGCTAGTAATATTCAGGTGTTAAAGGGGCTTGAGGCTGTTAGAAAAAGGCCCGGTATGTATATTGGATCTGTTTCAATTAATGGGTTGCATCACTTGATTTATGAAGTTGTTGACAATAGCATTGACGAGGCTTTAGCGGGATTTTGTGATAAAATAGATGTTGTTATAAATGAGGATAATTCCATAACAGTAAATGATAACGGTAGAGGGATTCCTACAGATATTCATGAAGAAGAAGGGATTAGTGCACTTGAACTTGTTTTAACTAAGCTCCATTCTGGAGGAAAATTTAATAAAAATACTTATAAAGTTTCTGGTGGACTTCATGGGGTTGGAATTTCAGTTGTTAATGCATTATCATCTTTTTTAGAAGTGATTGTTAGTAGAGATGGCAAGGTCTTTAGGCAGACTTTTTCAAGAGGTATTCCAACATCTGAGGTTGAAGTTATTGGGGCAAGTTCTTATAGGGGGACTAAAGTTACTTTTTCAGCTGATGCTGAGATTTTTGAAACCTTGGAATATGATTTTGAAACTTTATCAAAGAGACTTAGAGAACTTGCATTTTTAAATGATAAGATACGAATCTTACTAGAAGATAGAAGATTAGGGAAAGAGAGATTTTTAGAATTTTATTTTGAAGGTGGAATAAAAGCTTTTGTAGATTATATAACAAGTAATAACAAAAATATTCAAAGTGAACCTTATTTTATTGAAGGTTCTTGTGATGATGTTATTGTTAATGTTGGTCTTAAGTGGACTGAGGGATATTCTGAAAATATTTTGTCTTTTGCAAATAGTATTAATACTAGAGAGGGCGGAACCCATGTTTCTGGTTTTAGGCAGGGTCTTTTAAAGGCGATGAGTGAAGCTTTTAGGGAGTCAAAGATAAGCAAGAAAGATGTTCCAAGTCTTACATTAGATGATTTTAAAGAGGGTTTAACAGCGGTAATTTCTATTAAGGTTCCAGAACCTCAATTTGAAGGTCAAACTAAAGGAAAATTGGGAAATTCTTATGTAAAAAAAATTGTTGAAAATATTGTACGTGATGGGCTTTTGAAAATTATTGGTGATAATCTTTTAGAAATAGATGTAATTCTTAATAAGGCAATAAAGGCTGCTCGTGCTCGTGAAGCGGCAAGGAAAGCTAGAGAGTCTGAGAGGAAAAAAAGTGCTTTTGAAAGCTTGGCATTGCCTGGAAAATTAGCAGATTGTGCATCTAAGAATCCAGTTGAGAGAGAAATTTATATTGTTGAAGGTGATTCTGCAGGGGGAAGCGCAAAGATGGGCAGAAATAGATTTTTTCAAGCTATTTTGCCATTATGGGGCAAGATGCTTAATGTTGAGAAGACAAGAGAAGATAAGGTTATCACAAATGATAAGCTTATTCCAATAATTGCGTCTCTTGGGGCTGGTGTTGGAAAGACTTTTTATATTGAAAAACTTCGTTATCATAAGATTATTATTATGGCTGATGCTGATGTTGATGGATCTCATATTCGGACATTACTTCTTACTTTTTTCTTTCGTTATATGAGAGAGTTAATTGAAAATGGGCATGTATACATAGCTATGCCACCTCTCTATAAAGTTAAATATGACAGTAAGGTTCATTACTTCTATAATGATTTGGAAAAGGAATCTTTTTTGGGGTCAATTGAGACTCTTAAGAGAGATAAAGTTAGCCTTCAAAGGTATAAGGGTCTTGGAGAAATGAATCCTACACAACTTTGGGAAACTACTATGAATCCTGCTACTAGAAAGATGAAATTAATAGGCATAGATGATGCTGTGCAGGCTGAGAAAATTTTTGTTACTCTTATGGGGGATGAAGTTGAGCCTAGAAGAGAATTTATTGAGCAAAACGCGCTTGATGTAGTAAATCTAGATGTGTGATTGGAGCATTAATGGCAATTGAAGAAAATAAAGAACAAATATTAAATATAAAAATAGAAGATGAGGTGAGAACTTCTTACTTAAATTATGCAATGTCTGTTATTGTTTCAAGAGCTCTTCCTGATGTTAGAGATGGTCTTAAACCTGTCCACAGAAGAATCCTTTATTCAATGCATGAAATGGGACTTAAATCTGAAAAATCGTTCAAGAAGGCTGGAAGAATTGTTGGAGATGTGCTTGGGAAATATCATCCTCATGGTGATCAATCTATTTATGAAGCACTTGTAAGGCTTGCTCAAGACTTTTCTTTAAGGTATCCTGTAGTAAGTGGACAGGGAAATTTTGGTTCTATTGATGGTGACCCTCCTGCTGCTATGAGATATACTGAAGCTCGCATGGCCAGAATAGCTGAAGAGCTTGTGAGAGATATAGATAAGCAAACTGTTGATTTTAGACCTAATTATGATGATTCTTTGTTTGAGCCTGAAGTTTTGCCAGCTGCTTTTCCGTTTCTATTGGTAAACGGTTCTAGTGGAATTGCTGTTGGAATGGCAACAAGTATGGCTCCACACAATTTGAAGGAAATTTGTGATGCCATAATTTATATGTTGGATCATGATAATGTTTCCATTTATGATTTAATTGAAATAGTTAAAGGACCAGATTTTCCTACTTATGCTGAAATTGTTTATAATGATAGCCTAATTAAGGCTTATACGACAGGAAAGGGCAGTGTTGTTATTCGAGCTCGGTACCATATTGAGGAAAAACCTGAGGATAATCTTTCTATTATAATTACACAGATACCGTATGCTGTTAACAAATCATCTTTGCTTATGAAAATAGCATTATTAATGAAAGAAGAAAAACTGGAAGGTATATCTGATATAAGGGATGAGTCGGATCGTGATGGTATTAGAATTGTTCTTGAAATTAAAAAAGGATTTGATCCTAATGTTGTTATGAACTTGCTTTACGAATATTCTGAATTGAGGAAAAATTTTAGTATAAATAACTTGGCTCTTGTTAATGGAATTCCAAAGCAATTAAATTTGAAAGAGCTTTTATCTGAATTTATTAAGCATAGAAAGAAAATTGTTAGGAGGCGGGTAGAGTTTGACTTAAAGAAGGCAAGAGAAAAGGCACATATTCTTGAAGGATTAAATATTGCCTTAAAAAATATTGATAGAATAATAGAAATACTAAAATTTTCTAGGCTTGTAAAAGATGCTAAGGAACGTATTATTAAGGAGTTTAGTTTGTCAGAAGTTCAAGCTAATTCTATTCTGGATATGAAGTTACAAAAGTTAACCTCTCTTGAGGTAAAGAAACTTGAAGAAGATTTTACAACTGTCTTAGCTTTAATAAAAGATTATGAGGATATTCTTGTTAGTCCAGTCAGAATTGTAGATATCGTAAGAGAAGAGATTATTAATTTAAGTTTAAAATTTGGCGATGAGCGCCGAACAAAAATAATTTATGATGAGGAGGTTTTAAAAACCAGTATGTCAGATTTAATGCAGAGAGAAAATGTTATTGTTATTCTTACAAAAAAAGGTTTTATTAAAAGAATTTTGCAGGATGAGTATAAACTTCAAGGTATAGGTGGTAAGGGTCTTGGTTCTTTTGAGTTGCAAGATGGTGACCAAGTTAATATTGCTTTATGTGTAAATACTCATGATTTTTTATTGATGATTTCAAATGAAGGGAAGCTTTATGTAATTAATGCTTATAGTATTAAGGATGCTTCTAGGACTTCCAAGGGACAAAATGTTCGTGAGCTTATTAATTTGGGAGAGATGGAAAGAATATTGGCTATTAAAAATAGCAATGAATTATCTGTGAATAATTATTTATTAATAACAACTGCAAAAGGGAAAATAGCTCGTATTGAAACGGAAAGCTTTAAGACGGTTAAATCAAGGGGTGTTATTGTCATTAAACTTGATAATAAGGATTTTGTTACAAGTGCTGAAATTGTTTCTAAAGACGAGAAAGTTATTTGTATTTCTAAAAAAGGTAATGCTTTTGCGTTTAATTCAAATGATATTAGGCTTACACATAGAGGCACTCAAGGTGTGTCTGGTATGAAAGTAAGAGAGGGTGATGTGTTTATTAAGGCATTAGTAGTAGGACAAGGATCTCATCTTTTGATTGTTTCTGAAAATGGATATGGTAAGAGATTAGAAATATCTAAAGTGACGGGACTTAAAAGAGGAGCTACTGGCTATACTAGCTATAAGAAATCTGATGAGAAAGCAGGTGAAGTTGTTGATGCTATTACAGTTTCACATGATGATGAGGTTTTACTTATAAGTGAAACCTCAAAAGTTTTAAGAACATTGGTTGATAAAATATCTGAACAAGGTAAAGATGCTAGAGGAATGCAGGTGATATCTCTTGATGAGGATAAGTTAGTTTCTGTTTCAAAATTTATCAAATAATAAGTTAATGTTTAATTATATTGTTGGAATGTTCCACGTGGAACATTCTTTTTTTTGTGTTGTTTCTTTAATAGAAGTTGGCATAGAACAACTTTATAAAATTTTGTATTATTACAGGGAGGGCTTTAATAGAATGAAAGAGACTTTTAAGATGGTAGATATTAATCTTTTAGATATAGATAAGTTACAACCTAGAAAGTCTATTAATCTTGCTGAACTTGAAGAATTGAGTATCTCTATAAAAGAGAATGGAATATTACAACCTATTGTTGTTTTTCATAATGATGGTAGATATAACATAATAATAGGTGAGCGAAGATTTAGAGCTGCTAAGCTTGCTGATATGAGACAAGTTCCTATTATAGAAATAGAGCCAACTAGAAAAAATAAAGATTTTATGTCTTTAATTGAAAATATTCAAAGAGAAAATTTAACTCCTGTTGAAGAGGCATATGCTTATAAAAATCTTATGGATAAGCATTCTTTGACTCAAAAAGCTTTATCTGAAAGAATAGGGAAAAACAGGTCTCATATTGCTAATTTAGTTCGAATTTTGGAACTCGAGCAAGAGATATTAAATTCTTTACATAAAAGAGAAATATCATTAGGTCATGCTAAAGTTTTGTTATATTTGAAGGATAATCAAGATAGATATGCTCTGTATCTTTTAATCATTAAAAAGAAGTTGTCTGTTAGAGATGCAGAGAATTATGTTAAAAATTTTTATAAGCCCGTTAATGATACATCTAAAATATTAAGAGATCCTTTTTTAAATAGTGTTAAAGAATTTTTAATAAGTAGAATGCAAACTAAAATAAGTATTAAGGGTAGTAAAGAAAAAGGGAAGATAGAAATAAGTTATTTTACATCTTCTGATTTGAAAAGAATTATTTCTGTCTTTGAAAGTATTAAGTGATTTTTTTCATCTGATTTATTTTTTGTTGCATTTCTTTTAAATTAGTAAAAAGTTCTTTTTTATTTTCTATCTTGTCTAGTTTAATATTTTTAATATTTTTTAGTTCTTGTAGAAGTAGTTCTATTATTTTTATAATGTCTTCTCTTGTAAATTGTGTTTTATTAAATTTAATTTCAGAATTTTTTTCATAGTTTTCATCTTTTTTATAAAGAAGTAATTTAAATTCTTTTAAAGATTTTATTTTTCCATTAAGGACTTTCATTTTTAAATGAGTAGGACAGGATTTTTTGGAAATTTCATAAGAGAGAGACAGAGGTAAATTTTCTATTATAAGTTGCTTATCGGAATTTTCGACAAGCAACTTATATCTTGATATTAATGAGTAAACTTTATCCTTTTTAAATCCCATACTAGTGAACCATTTATAAAAGAGTCCGTCGTGTTGATTAGTGCCACTTAGTTTTTCTTTTGCTTCTTTTAGTATTTTTCCAATTTCTGTGTATGTGTTGTTAAAAATGTTAAAAATTTCATATTGCTTCATTTTTAAGAAATCAGCTATTTCTTTATCTAATTTTTCATATTTAAAACTTTTATTTTGAATGATAATTAATGCTTGCTTTGCTAAAATATGTTTGTCTTTTTCATTTTTTTTTAACTTTTGGCCCATTAAAGCCATTAGAGTGTCTAGACTGTCTGACATTTTTATTTTTTAATTTTCTCCATTATTTCTTTTGTAAGCTCTAAAAAATCTTTTGCTGCATTACTTTCTTTATTATAAATGTGTACTGGTATGTTTTCTTCTTGAGATTTGGAAATGCTTATATTTTTTCTTATTTTAGTATTTAAAAATTTTTCTTTGAATACTTTTTTTAAATAATCAATATATTTTTCTTTGCTTTTATTTCTGATATCATACTTGTTTATGAACACACCAGCGATCTCTAAATTTTGATTTATTTGTTTAACGGTGGTTATTGTATCTAATAGTTGACTGATACCCTCAAATGCGAAAAATTCTGTTTCTATTGGTATTAGAAGATATTTGCTTGCAACAAGTGCATTTATTGTGAGTATTGAAAGGGTGGGGGGACAGTCAAGTATAATGAAATCGTAGTCATCTTGTTTATATTGTTCTAAAGCATTTTTTAGAAAGTTTTCTCTTGCAATTTCATGTATTAATTCCTTCTCAAGTAATGCTAACTTAAGATTTGAAGGAATTATATCTAGATTGAAATTTTTAATAGGTTTAATTTTTTGTTTTTTATAAATAAGTTCATAACTTGAATTTGTGTCTTCTTTTTTTGGGATGTTAACTCCGCTACTGGTATTCCCTTGTGAATCAATGTCTATTAGAAGAGTCTTTTTATTAAGCAATGTGGTTGAATAAGCAATATTTATAGCACTAGTTGTTTTTCCAACACCGCCTTTTTGGTTAATAATAGATATTATTTTCATAAAAGTTTTCTCTTCTGCATATTAATAATATTCTATTGTAAAACATAAATAATGAAAATGGTAATAATATATGTAAAATTATTCCCAAAAGTGGTAAAATGCATATAGACATTTAACTTATCTAAATGTCTATATGCATTTTAAATTTAATTAAATTAGGGAATTTTCTTGTAGAAATGTTATAATGCTCTTTTTATCTGTTATGTTAAATTTTATTGTAGTATTTATTTTATCTAGGAAATTTGCATCTATAATTTTAATTCCTATTTTGTTTTTTATTCGTGTAAGTAAATGATATTGATTGTAATTTAAATTAAGAATTAATGTTTGCATTTCTTCCTTTTCTATTAAATTTGATGCGCTGATTACTTGTTGTGCTGCTTTAGAATATGCCTTGATTAAACCACTTTTCCCAAGCAGAGTTCCTCCAAAATAGCGTATCGTAATGATTAAAGTATCTGTTAAATTTTTATTTAATATGGCATCTAGTGTAGGTTTGCCTGCTGTTGATCTTGGCTCTTTATCATCGCTCATTCCATTTATAAATGAATTTGAATTTCCAATTCTAAATCCGTAAACGACATGAGTTGCATTTTTAAATTTTAATTTATATTCTTTTAATATTTTGTTTATATCTTCTTTTTTCTCTACGTGGAAAATATATGATAAGAAAATTGATTTTTTTACTTCAATTTTTGAACTGGTATTTTCTTTAGTAATTAGCATAATTCAATTTAATAATATATCATTATTCAATTTAATAATATATCATTTTTTTATATTGAAGTATTTTGAATTTATGTATATGATTAATGTTAACAACTCTTATTTAATAAATTCTAAGAGGGCGTATTTAAGAGGGCGTAAAAATGATATCAGGATTAAATCCTAAGTTAAGATTGTTGAAAGAACATAGAATACTTTATTCTAATATGGAAAGAGGATTAAAACCTCTCTTAGAGGTTGATAATTTTATTAATAAATACATTCAAAATAAGGAAGGTTTAGAAATTTATGATAAAGTTGTAGGCAAGGCTGCTGCTGTTATCATTTACAATATTGGACTTCAAAATGTTCATGCAAGTGTTATTTCTCAATCAGCAAAGGATTTTTTGGAAAGTAAAGGAATAAAGGTGAGTTTTAAAAGACTTGTGGATAAGATAAATGATAAAACTGAAAATTTGATCGAAAGTTTAGAAAATCCAGAGGAAGTTTATAAGTACTTGATAAAAAGAGGAATTATTATAAGTAACACCTAAATTATATTCATTTGCTTTTTGTTTTGGAATATACAGAAAGAATTAGAGCTATATTATAGCTTAATACCATTAAGCTTCCCCAGCTTAAATAAAAATTGTCTTTGCCATAATCAAAAAGCCATGTTCCAGCATAAACTCCTAAAAATCCTCCAATTGAAGATGCAAGCATAATTAAGTCAGGGTTGATTGTATGTTTGATAATTTGGCTTTTGCTATTTTGGTTAGGTTGCTTTTCGGAAAATTTACTGTCAACGAAAACCATGACTAATCCAGTGAGTGTGATGCACAAAAAATAGACTACAAATATCTTTCTAATGAGCTTAAACATAAAACTTTACCCCCTTTTAGCTTTCAGTTATTGAAATTAAGTAATAATATAAATATAACATAAAATAAGTATTTTCTCATGTGAAGATGTAAAAATTGAACTTTTTTCTTAAATCATAAAATATTTCAAGAGTAATTAATTTATATGGAGATTCTTCTTGCAGATTTAATGTGTAAAAATTTGAGTGTTGGATATTATTTATTAGTAAGTTTAATGCAATTTTGGATGAGTTGTATTTTAAAATTTTAAGGAGATTATGTGTTATATATTGTGGGAACCCCCATAGGTAATTTAGGTGACATTACATATCGTGCAATTGATATTTTAAAGTTGGTTGATGTTGTTTTTGCTGAGGATACAAGGATTACTAAGAGACTTTTATTTCATTATGGTATTGCTAAAAAGTTAATTTCTTGTAATGCAGTAATAGAGCATAGAAGAATTAGCTTATTGTTAGAGTATTTGTCTAATGGAAAAAGCGTAGCTTTTGTTAGTGATGCGGGCACTCCTTGTATTAGTGACCCCGGTGGTTTGCTTGTTGATGCAGCATTCAAAAATGGGTATAAAGTTTGTCCTATCCCAGGAGTTAGTTCTTTTAGTACAGTTATTAGTGTTAATCCTTTTAAAGATAAGGTTGTAATCTTTGAAGGTTTTTTGCCAAACAAAGGCATTAAGAGATTAAAAAGGATTGAGGAACTTTATCATACAGGTGATGCATTTGTTCTTCTTGAGTCCAATCATAGAATTTTAAAGTTGTTATTTGAAATTTCTTTAGTGAATTTAGATGCTAATGTTCTTGTTGGTCGTGAGATGACAAAATTATATGAAGAATATAAAATTGGCAAGCCTTTAGAATTGAAAAAATATTTTGAAGAGAATAACAAAAATAAAGGAGAGTTTACAGTTCTGGTTAGCAGGAAGTCTAAAAGTTAA

Protein sequences of DBSCAN-SWA_1

>NZ_CP024390|451035:460275|451035_452940_+|WP_025443728.1|DBSCAN-SWA
MSYFASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLIYEVVDNSIDEALAGFCDKIDVVINEDNSITVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKNTYKVSGGLHGVGISVVNALSSFLEVIVSRDGKVFRQTFSRGIPTSEVEVIGASSYRGTKVTFSADAEIFETLEYDFETLSKRLRELAFLNDKIRILLEDRRLGKERFLEFYFEGGIKAFVDYITSNNKNIQSEPYFIEGSCDDVIVNVGLKWTEGYSENILSFANSINTREGGTHVSGFRQGLLKAMSEAFRESKISKKDVPSLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVENIVRDGLLKIIGDNLLEIDVILNKAIKAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKVKYDSKVHYFYNDLEKESFLGSIETLKRDKVSLQRYKGLGEMNPTQLWETTMNPATRKMKLIGIDDAVQAEKIFVTLMGDEVEPRREFIEQNALDVVNLDV
>NZ_CP024390|451035:460275|457002_457755_-|WP_025443732.1|DBSCAN-SWA
MKIISIINQKGGVGKTTSAINIAYSTTLLNKKTLLIDIDSQGNTSSGVNIPKKEDTNSSYELIYKKQKIKPIKNFNLDIIPSNLKLALLEKELIHEIARENFLKNALEQYKQDDYDFIILDCPPTLSILTINALVASKYLLIPIETEFFAFEGISQLLDTITTVKQINQNLEIAGVFINKYDIRNKSKEKYIDYLKKVFKEKFLNTKIRKNISISKSQEENIPVHIYNKESNAAKDFLELTKEIMEKIKK
>NZ_CP024390|451035:460275|458624_459014_+|WP_025443734.1|DBSCAN-SWA
MISGLNPKLRLLKEHRILYSNMERGLKPLLEVDNFINKYIQNKEGLEIYDKVVGKAAAVIIYNIGLQNVHASVISQSAKDFLESKGIKVSFKRLVDKINDKTENLIESLENPEEVYKYLIKRGIIISNT
>NZ_CP024390|451035:460275|459600_460275_+|WP_025443736.1|DBSCAN-SWA
MLYIVGTPIGNLGDITYRAIDILKLVDVVFAEDTRITKRLLFHYGIAKKLISCNAVIEHRRISLLLEYLSNGKSVAFVSDAGTPCISDPGGLLVDAAFKNGYKVCPIPGVSSFSTVISVNPFKDKVVIFEGFLPNKGIKRLKRIEELYHTGDAFVLLESNHRILKLLFEISLVNLDANVLVGREMTKLYEEYKIGKPLELKKYFEENNKNKGEFTVLVSRKSKS
>NZ_CP024390|451035:460275|456292_457000_-|WP_025443731.1|DBSCAN-SWA
MSDSLDTLMALMGQKLKKNEKDKHILAKQALIIIQNKSFKYEKLDKEIADFLKMKQYEIFNIFNNTYTEIGKILKEAKEKLSGTNQHDGLFYKWFTSMGFKKDKVYSLISRYKLLVENSDKQLIIENLPLSLSYEISKKSCPTHLKMKVLNGKIKSLKEFKLLLYKKDENYEKNSEIKFNKTQFTREDIIKIIELLLQELKNIKNIKLDKIENKKELFTNLKEMQQKINQMKKIT
>NZ_CP024390|451035:460275|452951_455384_+|WP_025443729.1|DBSCAN-SWA
MAIEENKEQILNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSEKSFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPVVSGQGNFGSIDGDPPAAMRYTEARMARIAEELVRDIDKQTVDFRPNYDDSLFEPEVLPAAFPFLLVNGSSGIAVGMATSMAPHNLKEICDAIIYMLDHDNVSIYDLIEIVKGPDFPTYAEIVYNDSLIKAYTTGKGSVVIRARYHIEEKPEDNLSIIITQIPYAVNKSSLLMKIALLMKEEKLEGISDIRDESDRDGIRIVLEIKKGFDPNVVMNLLYEYSELRKNFSINNLALVNGIPKQLNLKELLSEFIKHRKKIVRRRVEFDLKKAREKAHILEGLNIALKNIDRIIEILKFSRLVKDAKERIIKEFSLSEVQANSILDMKLQKLTSLEVKKLEEDFTTVLALIKDYEDILVSPVRIVDIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKKGFIKRILQDEYKLQGIGGKGLGSFELQDGDQVNIALCVNTHDFLLMISNEGKLYVINAYSIKDASRTSKGQNVRELINLGEMERILAIKNSNELSVNNYLLITTAKGKIARIETESFKTVKSRGVIVIKLDNKDFVTSAEIVSKDEKVICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVREGDVFIKALVVGQGSHLLIVSENGYGKRLEISKVTGLKRGATGYTSYKKSDEKAGEVVDAITVSHDDEVLLISETSKVLRTLVDKISEQGKDARGMQVISLDEDKLVSVSKFIK
>NZ_CP024390|451035:460275|455487_456300_+|WP_099497131.1|DBSCAN-SWA
MYYYREGFNRMKETFKMVDINLLDIDKLQPRKSINLAELEELSISIKENGILQPIVVFHNDGRYNIIIGERRFRAAKLADMRQVPIIEIEPTRKNKDFMSLIENIQRENLTPVEEAYAYKNLMDKHSLTQKALSERIGKNRSHIANLVRILELEQEILNSLHKREISLGHAKVLLYLKDNQDRYALYLLIIKKKLSVRDAENYVKNFYKPVNDTSKILRDPFLNSVKEFLISRMQTKISIKGSKEKGKIEISYFTSSDLKRIISVFESIK
>NZ_CP024390|451035:460275|457905_458484_-|WP_025443733.1|DBSCAN-SWA
MMLITKENTSSKIEVKKSIFLSYIFHVEKKEDINKILKEYKLKFKNATHVVYGFRIGNSNSFINGMSDDKEPRSTAGKPTLDAILNKNLTDTLIITIRYFGGTLLGKSGLIKAYSKAAQQVISASNLIEKEEMQTLILNLNYNQYHLLTRIKNKIGIKIIDANFLDKINTTIKFNITDKKSIITFLQENSLI
>NZ_CP024390|451035:460275|459021_459342_-|WP_025443735.1|DBSCAN-SWA
MFKLIRKIFVVYFLCITLTGLVMVFVDSKFSEKQPNQNSKSQIIKHTINPDLIMLASSIGGFLGVYAGTWLFDYGKDNFYLSWGSLMVLSYNIALILSVYSKTKSK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025443728.1|451035_452940_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	5.1e-136	44.0
WP_025443729.1|452951_455384_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	2.9e-104	33.2
WP_099497131.1|455487_456300_+	chromosome partitioning protein ParB	I3NLC2	Bifidobacterium_phage	4.4e-12	33.1
WP_025443731.1|456292_457000_-	hypothetical protein	A0A286QNA3	Streptococcus_phage	1.4e-11	34.1
WP_025443732.1|457002_457755_-	ParA family protein	H7BUL8	unidentified_phage	8.1e-21	31.9
WP_025443733.1|457905_458484_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.6e-16	32.1
WP_025443734.1|458624_459014_+	DUF1893 domain-containing protein	NA	NA	NA	NA
WP_025443735.1|459021_459342_-	hypothetical protein	NA	NA	NA	NA
WP_025443736.1|459600_460275_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.1e-36	42.9