CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	0 crisprs	DEDDh	0	0	1	0
NZ_CP024425	Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP024422	Paracoccus yeei strain TT13 chromosome, complete genome	5 crisprs	csa3,cas3,cas3HD,DEDDh,PD-DExK,WYL	1	9	10	1
NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024428	Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21817 : 28780

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099650174.1\|21817_22594_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.5e-12	23.4
WP_099650175.1\|22609_24310_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-59	30.9
WP_099650176.1\|24288_25278_-	siderophore-interacting protein	NA	NA	NA	NA
WP_099650177.1\|25429_26011_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.2e-37	46.4
WP_099650178.1\|26007_27045_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.6e-97	53.9
WP_099650179.1\|27041_27893_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	7.5e-31	37.9
WP_099650180.1\|27889_28780_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-92	56.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024425

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30975 : 65189

Wolbachia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099648851.1\|30975_32385_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	6.3e-59	32.4
WP_099647977.1\|33287_34514_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_157767463.1\|34526_34715_-	hypothetical protein	NA	NA	NA	NA
WP_099650568.1\|34866_35163_-	hypothetical protein	NA	NA	NA	NA
WP_099650569.1\|35240_35819_+	hypothetical protein	NA	NA	NA	NA
WP_157767439.1\|35834_36002_+	hypothetical protein	NA	NA	NA	NA
WP_099650570.1\|36226_38866_-	AAA family ATPase	NA	NA	NA	NA
WP_099650571.1\|38862_39975_-	DNA repair exonuclease	NA	NA	NA	NA
WP_099650572.1\|40178_40577_-	PIN domain-containing protein	NA	NA	NA	NA
WP_099650573.1\|40566_40794_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_099650663.1\|42166_42814_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_028720295.1\|42856_43120_-	hypothetical protein	NA	NA	NA	NA
WP_099650574.1\|44577_45582_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.1e-12	37.8
WP_099650575.1\|45984_46725_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_099650576.1\|46822_47704_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_099650664.1\|47639_48608_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_099650577.1\|48668_49268_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_099650578.1\|49407_51399_+	PhoX family phosphatase	NA	NA	NA	NA
WP_099648611.1\|51515_52704_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-48	42.9
WP_157767441.1\|52929_53778_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_157767443.1\|54499_54658_-	hypothetical protein	NA	NA	NA	NA
WP_157767445.1\|54756_54906_+	hypothetical protein	NA	NA	NA	NA
WP_099650579.1\|54933_55416_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_099650580.1\|55649_56396_+	hypothetical protein	NA	NA	NA	NA
WP_099650581.1\|56399_56903_+	alginate export family protein	NA	NA	NA	NA
WP_099647977.1\|57362_58589_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099650666.1\|58504_59692_+	MFS transporter	NA	NA	NA	NA
WP_157767447.1\|60649_60832_+	YfdX family protein	NA	NA	NA	NA
WP_090757591.1\|61139_61631_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_099648851.1\|61853_63263_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	6.3e-59	32.4
WP_099650582.1\|63360_63540_+\|transposase	transposase	NA	NA	NA	NA
WP_099648851.1\|63779_65189_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	6.3e-59	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP024422

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024422_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024422_1

849641-849744

Orphan

Consensus_repeat	Method
AAAGGCCTCGCGCAGAGGCGCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024422_1

>merge|NZ_CP024422|1|849641-849744|CRISPRCasFinder
AAAGGCCTCGCGCAGAGGCGCGGGGGCTGAGCTAGGGGAGACGCCACCGCGCGAAGGCGCGGGGGGCTGAGTTGAGTGAAAAGGCCCCGCGCAGAGGCGCGGGG

>NZ_CP024422|1|1|849641-849744|CRISPRCasFinder
AAAGGCCTCGCGCAGAGGCGCGGGG	GCTGAGCTAGGGGAGACGCCACCGCGCGAAGGCGCGGGGGGCTGAGTTGAGTGA
AAAGGCCCCGCGCAGAGGCGCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024422.1\|WP_099650025.1\|849886_851431_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349922
NZ_CP024422.1\|WP_099648311.1\|857463_858915_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP024422.1\|WP_099648303.1\|842780_843455_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP024422.1\|WP_099650026.1\|856136_857435_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP024422.1\|WP_099648305.1\|844680_845976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380274
NZ_CP024422.1\|WP_099648304.1\|844046_844571_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_028720045.1\|838909_839527_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099648300.1\|839868_840780_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP024422.1\|WP_099650024.1\|845972_847133_-\|YcaO-like-family-protein	unknown	unknown	gnl\|CDD\|376866
NZ_CP024422.1\|WP_028720055.1\|852944_853136_-\|DUF2783-domain-containing-protein	unknown	unknown	gnl\|CDD\|371304
NZ_CP024422.1\|WP_099648313.1\|860234_860678_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP024422.1\|WP_099648308.1\|851518_852919_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143424
NZ_CP024422.1\|WP_099648312.1\|859078_860116_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP024422.1\|WP_099648306.1\|847210_847705_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP024422.1\|WP_099648307.1\|847869_849636_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP024422.1\|WP_099648301.1\|840943_841717_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183716
NZ_CP024422.1\|WP_036762958.1\|855757_856114_-\|DUF861-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP024422.1\|WP_099648302.1\|841801_842566_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|226476
NZ_CP024422.1\|WP_099648310.1\|854728_855688_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
NZ_CP024422.1\|WP_099648309.1\|853123_854704_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236158

Protein	Function_ID	Function_description	E-value
NZ_CP024422.1\|WP_099650025.1\|849886_851431_+\|amidohydrolase	gnl\|CDD\|349922	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily. Peptidase M20 family, ACY1L2 aminobenzoyl-glutamate utilization protein B (AbgB) subfamily. This group contains mostly bacterial amidohydrolases, including gene products of abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate is a natural end product of folate catabolism, and its utilization is initiated by the abg region gene product, AbgT, by enabling uptake of its into the cell in a concentration-dependent, saturable manner. It is subsequently cleaved by AbgA and AbgB (sometimes referred to as AbgAB).	6.70023e-135
NZ_CP024422.1\|WP_099648311.1\|857463_858915_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	6.19144e-27
NZ_CP024422.1\|WP_099648303.1\|842780_843455_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.06534e-38
NZ_CP024422.1\|WP_099650026.1\|856136_857435_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.3188e-59
NZ_CP024422.1\|WP_099648305.1\|844680_845976_-\|hypothetical-protein	gnl\|CDD\|380274	NF033432, ThioGly_TfuA_rel, TfuA-related McrA-glycine thioamidation protein.	2.00949e-70
NZ_CP024422.1\|WP_028720055.1\|852944_853136_-\|DUF2783-domain-containing-protein	gnl\|CDD\|371304	pfam10932, DUF2783, Protein of unknown function (DUF2783). This is a bacterial family of uncharacterized protein.	5.36002e-16
NZ_CP024422.1\|WP_099648300.1\|839868_840780_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.6637e-109
NZ_CP024422.1\|WP_099650024.1\|845972_847133_-\|YcaO-like-family-protein	gnl\|CDD\|376866	pfam02624, YcaO, YcaO cyclodehydratase, ATP-ad Mg2+-binding. YcaO is an ATP- an Mg2+-binding protein involved in the peptidic biosynthesis of azoline. There three motifs involved in the binding are, in UniProtKB:P75838, 71-79: Sx3ExxER, 184-203: Sx6Ex3Qx3ExxER, and 286-290: RxxxE. Three slightly different functional families are represented in this family, proteins involved in TOMM (thiazole/oxazole-modified microcin) biogenesis, non-TOMM proteins such as UniProtKB:P75838, and TfuA-associated non-TOMM proteins involved in trifolitoxin biosynthesis. UniProtKB:P75838 hydrolyzes ATP to AMP and pyrophosphate.	2.08932e-86
NZ_CP024422.1\|WP_099648313.1\|860234_860678_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.35134e-13
NZ_CP024422.1\|WP_099648308.1\|851518_852919_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143424	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.	0
NZ_CP024422.1\|WP_099648312.1\|859078_860116_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.19074e-27
NZ_CP024422.1\|WP_099648306.1\|847210_847705_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.11592e-07
NZ_CP024422.1\|WP_099648307.1\|847869_849636_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	8.86461e-39
NZ_CP024422.1\|WP_099648301.1\|840943_841717_+\|SDR-family-oxidoreductase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	1.86769e-169
NZ_CP024422.1\|WP_036762958.1\|855757_856114_-\|DUF861-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	9.33165e-23
NZ_CP024422.1\|WP_099648302.1\|841801_842566_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|226476	COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane].	6.21714e-101
NZ_CP024422.1\|WP_099648310.1\|854728_855688_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.90222e-55
NZ_CP024422.1\|WP_099648309.1\|853123_854704_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	0

>NZ_CP024422.1|WP_099648307.1|847869_849636_+|tetratricopeptide-repeat-protein
MIAQTSLTGPRLMTVLYADIHGYTGLIERDEQGTLARLTRSLALIRSLTGDYGGSVVNTAGDGLVAVFESVQQALHFALEMQRELAREQAWAEDGQPILYRVGISVGDTFAGQDGVYGHSVNLAARIQSFAEPGGICVTDAVYRMLRPNDEVRLRSIGTKRLKNISTPVEVFSVEMLPTVPAAAQEILPLRPAPPAETLPDASVAILPMENISADPGDLYLCQGIAADLITSLSRFRNLMVIARHSAILAAANSGSLREIGQRLGVRYLLSGSLRRSGNRIRITADLIEARSENIIWSERYDGVMNEIFDFQDDVAAMTAARVAIQIDAAERQRLAAQQHPALYAYGLVLRGQDMGFRFLRDANLHARRLFEQARQLDPAYGRSYAAISRTFNVEWRYNWTSDPAGALNQALVLAKRAVECDNLDSRGYSEMGLAHLYLKQHDEALAAYEHAIGLNPNDADLLAYMGDCLAYVRQGPRAVQMLERAIRLNPYHPDSYLWFLGDAYFHNGQYPETIQTLNRMRDRSEAHRLLAASHAMLDQMPEARHHAAEVMRVHPNFTIEHWRKVPPLRHPEDLELYIHGLRKAGLS
>NZ_CP024422.1|WP_099648306.1|847210_847705_-|GNAT-family-N-acetyltransferase
MADSRPIVRAMKECLEFGLRSARPDEFAFAEAIYINAMRPLMEQVDAWDEPLRRAAIRRSFKAADSCIITLGGRDIGWMQVTERDADYNLAQIQILEEYCGLGIGTRIIRDLLDKAARQGRTVSLSAVRTNRAIGLYQRLGFRIIDPDASPIIDMVWTPARRSS
>NZ_CP024422.1|WP_099650024.1|845972_847133_-|YcaO-like-family-protein
MSPAETVARVTPLMARMGITRVADVTGLDRIGVPVVMVCRPNARSLAVSQGKGCDLAAATASGLMEAAELYHAEHIDRPLRLGSLAELSGALPFADIARLPRISDAFHPHLVTLWIEGRDLVSGQPRWLPFESVRANFTLPPPPGSGCFDCSSNGLASGNSMAEALCHAICEVIERDAIALWNAGGERGATGLDLAGVDDPACRDLLARLEGADFDVAVWDIASDIGVPTFSCLITDRRDPMQHIGLGAGAHPARAIALSRALTEAIQVRTTYISGARDDLTHRDYGAAERARKAAWAARMRAEHRPTRDFGGIAQHVSDRFGQDLGWLLDRLSGVGATEVVAVDLGKPDLGLDVVRVVIPGLEGPDDHPRYRPGARARRRMERAR
>NZ_CP024422.1|WP_099648305.1|844680_845976_-|hypothetical-protein
MTAVIFSGPSLRAEDRARFPGLTFLPPVAQGALYAAARRGPRAIGMIDGFFDGQPAVWHKEILWALSQGIAVFGAASMGALRAAELAPFGMIGVGGIFRDFRDGTLRDDDEVALLHGPAETGYLGLSEPMVNIRATVGLALAEGLLDAPGAGAILAAAKGRFYPDRLWENLLPALPDPAARSALAAWLAQGRVDRKRQDALALLDAVQDHLDRGGPAPAPGFFFEPTEAWASAPWLDADPDPEAEAILDELRLDPDAYGRVRDAALLQVLVEGAPRTDPGADLGDKDEALAQVVHEFRMAQGLLRQADLQAWMARNDLDTAGFRRLMQGQAALRAAGRRRDPALGAAILDRLRLQGDYAALRDRARAKRQAAAAEPGLPLPLLVAWYFETRLNRPLPDSIPDHAAALGLPDADRFHRILAAEYAFLRAQAS
>NZ_CP024422.1|WP_099648304.1|844046_844571_-|hypothetical-protein
MTETLLNTSAILLFGRVVEDLRIDPKASDPAHSGAPGHLAQQLAAKDPRLARIYGFGLAGVYHLLPTPALFLVHGPGAPAATLLAGLHPSSLPEAGDKDRAPVPAGALLPEDLVAWSYDKADYTIRLDVQTGSFEQLLLGGGPDGPQTRGMSVQGMSVRGMSFRGMSLRGGDKD
>NZ_CP024422.1|WP_099648303.1|842780_843455_-|Crp/Fnr-family-transcriptional-regulator
MLIQLCDLDWFRGLPAPELDRIQAACLRRSFEQGQRIIERGEPGQTVLFVLSGHVLAVQWTEGGREIVYKDIGPGAPFGELSVISGAPRSLSLYARTDCTVLEMPGPLLLELIDTRPEVRQAVMRGLVRCVYDLTERVQELTVLGVEDRLRAYLLRTALEQGELKPGLTLGNLPTHAVIANIVGANREAISRSLAALNRRGVIQSGRRFLRILKPDALMRLDEG
>NZ_CP024422.1|WP_099648302.1|841801_842566_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKQSGNTILVTGGGSGIGAALAHRFHDLGNTVVIAGRRQEALDRACAGRADMHALTLDVDSAEGVADFARRLLAAHPALNVLVNNAGIMRFERLDGARDLSDAEETIATNLLGPIRLTNALIDHLVAQPDAAIVNVTSGLAFVPLTTTPTYNATKAAIHSYTVAMREALKGKVEVIELAPPAVQTGLTPGQESRQGYLPLETFADEVMALFRQQPTPSEILVDQVRFLRFAEAEDRFDETLAQLNAFVAKVSGP
>NZ_CP024422.1|WP_099648301.1|840943_841717_+|SDR-family-oxidoreductase
MTDHGIKGKAALIAGGAKNLGGLIARDLAAQGAKAIAIHYNSEGTKADADATVAALKAAGAEAVAFQADLTTAAAMEKLFADTVAAIGRPDIAINTVGKVLKKPMIETSEAEYDEMDAINAKAAFFFLKEAGLNVNDNGKVLTIVTSLLGAYTPYYASYAGMKAPVEHFTRAASKEFGARGISVNAIGPGPMDTPFFYPAEDADAVAYHKTAAALSKFSRAGLTDIEDIVPWVRLLVSDGWWMTGQTILVNGGYTTK
>NZ_CP024422.1|WP_099648300.1|839868_840780_-|LysR-family-transcriptional-regulator
MDRIDLFRIFTRVVDAASFTRAADTLGLPRSSVSAAVAELEGRVGARLLNRTTRRVAPTQDGAAFYERCLRVIADVEETEGLFRQTAQPSGRLRVDVPGRIGRLILAPALPSFLEAYPGIDIELGVTDRAVDLVGEGVDCVLRVGPLGDSGLIARTIGTLPLINVASPDYLARHGSPETPADLGRHWAVNYASPSTGRVEPWEWVDQGALRATPMRGRVTVNSAEAYIACCLAGLGLIQIPAYDVRPHLEAGELVEVLRDHRAEPLPATLLYPHRQHLSRRVQVFAEWLEALLRDALHGTPGA
>NZ_CP024422.1|WP_028720045.1|838909_839527_-|hypothetical-protein
MKPSDQLAEFVRAAMARGGTPDAIRDALQDAGWSAPEIAEALSGWQAAPGLPPVPRPRPYVSAQEALMYGLLFLSLGVIAWHLCQLGIELVDYLIPDAAGRTQRPGGAERWSIASLIAFTPLFWVLNRRVARLSQGDGGRRRSLVRKWFASMTLMVASLVFLADAIYVIYALLNGDLTLRFAIKAALVAAVAGLVFAYYRDELDA
>NZ_CP024422.1|WP_099650025.1|849886_851431_+|amidohydrolase
MSRRALMLSSLATAALWPVGADLALAQDAPPAGPAPESAAAARDAVEAIRDQILRISREVWETPELSLHEEISHQIHIRELEAAGFTITSRGTSNIPTAFVAEWSQGEGGAKVGFLPEYDALPGLGNAAEPRQAPGPNGTEVGHGCGHNQLGAGCTGAAIALKAMMTADGTPGLIRVYGCAAEETQGAKVYMARDGLFDDLDAALAWHPGPMNATGMLRTAAVNMLRITFTGRTAHAGVDPWEGRSALKGAELFGTGIQFMREHLQPTTRLHYVYEAAGETPNVVPDHAAVLIMIRDESRASVEAVTEWVRDVARGAALTTRTEAEVDLFFGMHDLLPNEPLLQRVHQHMGAVPIEWSAEEQDFAKTCQREMGLPEQGLMPILMPLLPEITNGGGTDVGDVSYITPTALFAWVSMPIGVGLHTWPVTACGGMSIGDKSAIASATIMAGVGHDLMTDPELRAAARADFDRRRGDRPFVSALPKDKVRPEGIPPHLLIRDGSDEIPAGYDPAHEVH
>NZ_CP024422.1|WP_099648308.1|851518_852919_-|aldehyde-dehydrogenase-family-protein
MFDLTIDGKPVATEARFAVMNPATGAVVGHAPNATPADLDRAVAAARAAQPGWAALPDADRAAACAAIARLLTDHAEELARLLTQEQGKPLNGLGSRWEMGGAAAWAGHTASLSLPEEVLQDDEAGRVRLLRKPIGVAGSITPWNFPVMIAVWHILPALRVGNAVVIKPSALTPLATLRMVELASAVLPPGVLNIVTGDDKGFNLGAAMSEHPGIDKIVFTGSTPTGRHVMRAAAGNLKRLTLELGGNDAGIVLPDADPAAIAEGLFWSAFINNGQTCAALKRLYVHDSIHDAVCAALVAFARTIPLGDGMDEASVLGPVQNRAQFDKVAALVADAAARGQVLLGGAPGQGLFFPPTIIAGLRNGDALVDQEQFGPALPVIRYSSLDEAVAMANDNPNGLGASVWGSDVDAARAVARRLESGSVWINKHGAVQPNAPFGGVKQSGIGLQFGLEGLKENTTAQVVFG
>NZ_CP024422.1|WP_028720055.1|852944_853136_-|DUF2783-domain-containing-protein
MPALNLAPNLTRHDDLYQELVAMHDGLSEAESLKLWSRLVLILMNQVGDPEAVLAAIAAARSR
>NZ_CP024422.1|WP_099648309.1|853123_854704_-|FAD-dependent-oxidoreductase
MANIAGIPVYKEIGATPAPAVPQDRAPVVIVGAGPVGLAMALDLGRRGHAVTVLNRLDFVAHCSKAICFSKRSLDILDRLGVCDAAMDKGVTWNVGKVFWGAGDQPIYQFDMASVKDQKRPGFINIQQYYIEEYLLDGCRALPNVQIRWGHRVDAVTPLNDGVQLSVSTAETGYQLVADWLIACDGARSTVRDKMGLDFEGRVFEDNFLIADIRMKHEMPSERWFWFDPPFNTGRSALMHKQPDDVWRLDFQLGWNIDREAAIRPENVEPYVRAMLGDDVEFQREWYSVYTFQCRRMARFVHGRVIFAGDAAHLVSPFGARGCNGGFADIDNLGWKLDLVLRGQADEALIETYNDEAVATADENILNSTRSTDFLTPKSAASQGLRDAVLELAQDHAFARPFVNSGRLSTPVAYPASRLSTPDRDLWQGGVAPGAPVLDAPHRDGWLLDALGDDFTLIATGWQGPPPQGVRLVLVEGLAAERLELAPGAAVLVRPDQYVAARWKSASAADVEAALIRAKGGQSCLH
>NZ_CP024422.1|WP_099648310.1|854728_855688_-|MBL-fold-metallo-hydrolase
MNKAFASSADTAAKTDTLEILGEGVYALTAEGDPNVGAVEGEDFLVAIESRATPAASRDWLKILRQQTDKPVRYLILTHYHAVRVLGASAFDAGDIVMSEASRDLVAERGEQDWKSEFGRMPRLAKNAEEVPGLTWPTITFATDHAIDLGGDRGRLELRFLGRGHTGGDIVVWHDKTRTLFAGDLVESKAALYTGDAYHFDWAGKTLDNVKAYQAENLIGGRGAVSRGVAETDAAVEQTRKFLNGMIENVGRVHKAGGTLKAAFEATRDALAPEFGAWPIFEHCLPFDVQRLWDEFEGIEHPRIWTAERDREVWAQLQG
>NZ_CP024422.1|WP_036762958.1|855757_856114_-|DUF861-domain-containing-protein
MTIKIDTTVPELEPWGSVTNLGSEVLEGDVQCMGRMIHGAPTDPVSCAWFGATRGKFRMTYPFDEHSVVVEGSVTLTNEATGEAVSYGVGDAWFVRKGTPVLWEITSDRFVKNYLAVA
>NZ_CP024422.1|WP_099650026.1|856136_857435_-|FAD-binding-oxidoreductase
MRHLDALNYYTATRKYDLSFPRLTQDLDADVVVIGGGFSGINTALELAEKGITNIVVLEGRHLGYGGTGRNGGQVMAGIGHDLNAVKKHVGPGGMETLFKIANLGAGVIRDRVARYRIDADFCRGYGYLAYNQRQMTTLRSWFDEFRAVDPDEDIELLEGPAVRRIVGSDVYAGAIKHMGGGHVHSLNLLLGEAQALAGHGARIFENSPAVSVEYGERITVRTNAGSVRAQKLLWACDGFLNRMEPEIAGKTINTYAFQIATEVLPDDLIARISPIRGAYSDIRPVIDYYRVTTENRLLYGSATRVVDRIPQDLAGWNRALMLKTFPYLRDVRIDMAWGGPMACSANLFPQIGTLSGRPNAFYVQGYSGFGVTPSHIVCKVLAEGMSEGSARYDLMARIPHVSILGTDHARPAVTTAAKCWHQLSGYFNGRR
>NZ_CP024422.1|WP_099648311.1|857463_858915_-|APC-family-permease
MSQSASAGTPHRAGLARNSIGTTHIVFFVVAAAAPLASVVGASPAAFAFGNGAGVPGVYLLVGLLYLVFSVGFTAMARHAGSAGGFYTYISRGLGRPAGVAAAAIALLTYKTIQLAAYTLFGIFVSGALAGLGLTVPWWVPIMVIMAVIWLCGARNIAFSGRVLGLCMLAEIAILFLLDMGILLGGGGPEGITLTSFAPATVLAPGLGAALVFVIASFMGFEATAIFSEEAENPHRTIPRATYAAVALIAGFYAFSTWSITQYYGPATIQAAAEAGLETLFFNAAADVLGGWSVKVIELLLIVSLFASGLSFHNTINRYFYALGRDGLLPRGLGLVHERHGSPHVAGRAQSLIALILLLGAVVSGVDAYAVVFSWTSAIAVIGILAVQIMVSVAIIAWFRRLPDPPGLWTRAVAPGLALAGLGAGMALVIANLPLLAGSDSLIIWSFPFVVAAFGLLGAGYAAFLRTRRPALYAALNTAISEV
>NZ_CP024422.1|WP_099648312.1|859078_860116_+|AraC-family-transcriptional-regulator
MLTGPMPMIRVSSLAPVLNALDRRDQDGPAEPGKAVRVATLLSRHLLSRETVADAYAEIPLPRYVALLEDAAELAEDPFLCARVGTRFRPADLGPVGLIFAASATLRRGLERLARNLASWQDGTTIRLETDRDSVIWTYRIAMSDIGPHRQDSEYTLAATLALARDVFGAAGRPQEIHVEHDAPPGAAGLTRILGLRPSFGQSANRLIFARATAERAVRSEDAGLMAVLLRHVEDLRRPATAGDLVTRVRGLIALHLGQRPVTLALIAAELNLSTRSLQRRLAEAGTALRPLVLQARLDMAQSQLREGRIPNAEIARRLGYADSTALWRAFKTATGTSPRAQRDR
>NZ_CP024422.1|WP_099648313.1|860234_860678_+|MarR-family-transcriptional-regulator
MRIEGFLPYRLAVVAEALSRQLGAVYGGEHGLTREEWRLLFLIEDAGRIDSLQLAGRTSLDKVQVSRAASRLADKGLILRRIPSGDRRLREYAITEAGQALFREVFGAVEARAGAIFMAMPSEDRAALEKGIGALGEAIRQIGDPAR

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Crispr_ID: NZ_CP024422_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024422_2

951365-951729

Unclear

Consensus_repeat	Method
CGTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CRT
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CRISPRCasFinder
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP024422_2

>merge|NZ_CP024422|2|951365-951729|CRT,CRISPRCasFinder,PILER-CR
CGCCTCGAGCCGTGTCTCTGTGAGGGGGCGACTCTGCGCCAGAACGGGCAGCTTGATTTCGTCATCGTTTCGATCCGCGCCCCCGTGAGGGGGCGACAAACCGCGCACCTTGATCGCGTCAGACAGCGCGTGTTTCGATCCGCGCCCCCGTGAGGGGGCGACCGCGGTCTTCCGTCTCGCGCGGATCTTCCTTCGCTTCGTTTCGATCCGCGCCCCCGTGAGGGGGCGACCTTGGAATCGAAACGAGCGAAGAACGAGCGTTTAACCGTTTCGATCCGCGCCCCCGTGAGGGGGCGACCCAGCAAACGAAATGGATGCCGTTTGTTTTCTTCATGTTTCGATCCGCGCCCCCGTATATGGAATTG

>NZ_CP024422|2|1|951365-951662|CRT
CGCCTCGAGCCGTGTCTCTGTGAGGGGGCGAC	TCTGCGCCAGAACGGGCAGCTTGATTTCGTCAT
CGTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	AAACCGCGCACCTTGATCGCGTCAGACAGCGCG
TGTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CGCGGTCTTCCGTCTCGCGCGGATCTTCCTTCGCTT
CGTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CTTGGAATCGAAACGAGCGAAGAACGAGCGTTTAAC
CGTTTCGATCCGCGCCCCCGTGAGGGGGCGAC

>NZ_CP024422|2|2|951366-951729|CRISPRCasFinder
GCCTCGAGCCGTGTCTCTGTGAGGGGGCGAC	TCTGCGCCAGAACGGGCAGCTTGATTTCGTCATC
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	AAACCGCGCACCTTGATCGCGTCAGACAGCGCGT
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CGCGGTCTTCCGTCTCGCGCGGATCTTCCTTCGCTTC
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CTTGGAATCGAAACGAGCGAAGAACGAGCGTTTAACC
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CCAGCAAACGAAATGGATGCCGTTTGTTTTCTTCAT
GTTTCGATCCGCGCCCCCGTATATGGAATTG

>NZ_CP024422|2|1|951431-951662|PILER-CR
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	AAACCGCGCACCTTGATCGCGTCAGACAGCGCGT
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CGCGGTCTTCCGTCTCGCGCGGATCTTCCTTCGCTTC
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC	CTTGGAATCGAAACGAGCGAAGAACGAGCGTTTAACC
GTTTCGATCCGCGCCCCCGTGAGGGGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024422.1\|WP_036762494.1\|962694_962901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_080621221.1\|965477_966110_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP024422.1\|WP_028719254.1\|962372_962669_-\|photosystem-reaction-center-subunit-H	unknown	unknown	unknown
NZ_CP024422.1\|WP_099650031.1\|954015_956238_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_CP024422.1\|WP_036762500.1\|961833_962109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099648363.1\|944852_945758_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380544
NZ_CP024422.1\|WP_099648364.1\|947019_948480_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP024422.1\|WP_099648361.1\|942315_943290_-\|ribose-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181922
NZ_CP024422.1\|WP_099648362.1\|943279_944782_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP024422.1\|WP_099648360.1\|941551_942283_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP024422.1\|WP_028719253.1\|963053_963566_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226210
NZ_CP024422.1\|WP_028719251.1\|966213_967212_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP024422.1\|WP_028720738.1\|945859_946744_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380381
NZ_CP024422.1\|WP_099648368.1\|952759_953914_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP024422.1\|WP_099648369.1\|959494_961837_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP024422.1\|WP_099650030.1\|949795_950713_-\|DUF2382-domain-containing-protein	unknown	unknown	gnl\|CDD\|378207
NZ_CP024422.1\|WP_099648365.1\|948490_949528_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176188
NZ_CP024422.1\|WP_099648359.1\|939901_941527_-\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212663
NZ_CP024422.1\|WP_099648366.1\|950732_951161_-\|YsnF/AvaK-domain-containing-protein	unknown	unknown	gnl\|CDD\|378207
NZ_CP024422.1\|WP_099648371.1\|963907_965356_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226434

Protein	Function_ID	Function_description	E-value
NZ_CP024422.1\|WP_080621221.1\|965477_966110_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.89503e-08
NZ_CP024422.1\|WP_099650031.1\|954015_956238_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	2.49978e-166
NZ_CP024422.1\|WP_099648371.1\|963907_965356_+\|PAS-domain-containing-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	2.13415e-37
NZ_CP024422.1\|WP_099648363.1\|944852_945758_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380544	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	5.09402e-119
NZ_CP024422.1\|WP_099648364.1\|947019_948480_-\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP024422.1\|WP_099648361.1\|942315_943290_-\|ribose-ABC-transporter-permease	gnl\|CDD\|181922	PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed.	9.29948e-96
NZ_CP024422.1\|WP_099648362.1\|943279_944782_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP024422.1\|WP_099648360.1\|941551_942283_-\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	6.94004e-89
NZ_CP024422.1\|WP_028719253.1\|963053_963566_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|226210	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown].	8.99019e-70
NZ_CP024422.1\|WP_028719251.1\|966213_967212_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.51737e-98
NZ_CP024422.1\|WP_028720738.1\|945859_946744_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380381	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain. MtlR is a Pseudomonas fluorescens protein that acts as a transcriptional regulator of the mannitol utilization genes. It has an N-terminal cupin domain (represented by this alignment) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.32964e-40
NZ_CP024422.1\|WP_099648368.1\|952759_953914_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.10966e-11
NZ_CP024422.1\|WP_099648369.1\|959494_961837_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.83539e-52
NZ_CP024422.1\|WP_099650030.1\|949795_950713_-\|DUF2382-domain-containing-protein	gnl\|CDD\|378207	pfam09557, DUF2382, Domain of unknown function (DUF2382). This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	2.17491e-33
NZ_CP024422.1\|WP_099648365.1\|948490_949528_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176188	cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	5.39195e-165
NZ_CP024422.1\|WP_099648359.1\|939901_941527_-\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|212663	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP024422.1\|WP_099648366.1\|950732_951161_-\|YsnF/AvaK-domain-containing-protein	gnl\|CDD\|378207	pfam09557, DUF2382, Domain of unknown function (DUF2382). This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	2.74771e-14

>NZ_CP024422.1|WP_099648366.1|950732_951161_-|YsnF/AvaK-domain-containing-protein
MPDEPDDIIPVIQEQVGVSVERRLAGRVRVSVRTQTDESLVPVDLTQVDVAVERVPVNRAIDTAPEVVTRGDVTIIPVVEERLVLTRQLYLREEIHIRRVERRETAEVPVETRKQVATIERLPADEDNPIPSTNPDQFPRKG
>NZ_CP024422.1|WP_099650030.1|949795_950713_-|DUF2382-domain-containing-protein
MQTTGNSTITAMFDSRSDAERATARLRDAGFSSSQISMVEGDETAGATPDPDRSKGFWDSLGDFFFPEQDRYTYAEGLSRGGYLVTVTGLQAGQYDTALDILDDEGTIDLEEREQSWRSEGWGGYEASPYAARGTMAGETGADFGVTGAGVAGAAETDARLGAADLGSDDLRGDRLAGEETIPVVEERLRVGKRDTSHGRVRVRAYTVEEPVSESVDLREERVEIERRPVDRPVSDADAFQDRTIEAEEYREEAVISKEARVVEEIGLRKTSDTHQETVSDTVRRTEVEIEDDRDADRGLPRKDI
>NZ_CP024422.1|WP_099648365.1|948490_949528_-|NAD(P)-dependent-alcohol-dehydrogenase
MKALVLEEKGKLSLRNFDMPRTLGPRDVRIKTHTVGICGSDVHYYTHGKIGHFVVDAPMVLGHEASGTVVEVGSEVGHLKPGDRVCMEPGIPDPTSRAAKLGIYNVDPAVVFWATPPVHGCLTPEVVHPAAFTYKLPDGVSFAEGAMVEPFAIGMQAALRARIQPGDIAVVTGAGPIGMMVALAALAGGCARVIVADLAQPKLDIIGAYQGIRTVNIRDRALADAVAEATDGWGADVVFECSGAAPAILGLPALARPGGAIVLVGMPVDPVPVDIVGLQAKELRIETVFRYANVYDRAIALIASGKVDLKPLISATIPFEDSIAGFDRAVEARETDVKLQIAMPQ
>NZ_CP024422.1|WP_099648364.1|947019_948480_-|xylulokinase
MYLGLDLGTSGIKAMLVDDRFATVGVAHAPLSVSRPQPGWSEQDPADWIAGAEAVIAALLRDHPAAMARLQAIGLSGHMHGAVLLDASDRVLRPCILWNDGRSGPQCAELTARADFHGIAGNLVMAGFTAPKLLWVQQHEPQTFRAVAKVLLPKDYLRLWLTGAHVAEMSDAAGTLWLDVARRDWSDALLGATGLTRAQMPALVEGSDVSGHLRADLAERWDIARVPVAGGGGDNAATACGMGVMTPGTGFLSLGTSGVLFAATERYAPNTGDAVHTFCHAVPQTWHQMGVILSATDSMTWLSEITGKAVPDLAALVPETVATPSPALFLPYLSGERTPLNDPDATGAFLGLRRASGLGDLAQGVMEGVALAFADCVQALRKAGTPIEAAYAVGGGARSRAWLRIMASATGLTLLEPEDGDFGAAFGAARLGAACITGDLSDAGFPKPAVRAEVAPDAGLAARYAEKYVAFHAAYPQLRSLGQPAA
>NZ_CP024422.1|WP_028720738.1|945859_946744_-|helix-turn-helix-transcriptional-regulator
MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVNATSGTFYIGDFVGRFQPGQLIMTGPNLPQNWISDIQPDEIVPIRSLVIQFPEPFIENACATMPEMEALRPLLDRSRRGVLFDDETTRLVRPLMDRLVEAQGIRRLALFWEILDHLANAPQSEVLASLGFGLDLGRVHDGGINRALTYLREHLTEQIEESELAEMVGQSQSAFSRAFKRHTGTTLVRYRNQLRVDLACQMLLTDPDIKVAEICYEVGFSNLSNFNRHFLKHKGMSPSQFRATFAAQKALVMAD
>NZ_CP024422.1|WP_099648363.1|944852_945758_-|ABC-transporter-substrate-binding-protein
MKSTFLTATAALALLAAPALAQDKLKIGMTFQELNNPYFVSMQEALNEAAASLGAEVVVTDAGHDVAKQISDVEDMLQQNIDILLLNPTDSAGIEAAVHAAKAAGVVVVAVDANANGPVDTFVGSKNRDAGYMSCKYLGDALGGKGEVAILDGIPVVPILQRVEGCKAALAEFPDIQLVDTQNGRQDRSVALGVVENMIQSKPNLAGIFSVNDGGAMGALAAIQGSGKDIKLVSVDGAPEAVKAITEGGPFIETTAQFPRDQVRVGLAMALAQKWGARVVPKEVPIDVMVVDKENAADFSW
>NZ_CP024422.1|WP_099648362.1|943279_944782_-|sugar-ABC-transporter-ATP-binding-protein
MLELNGIRKSFGKIEVLHGVDLEVRAGEVHALLGENGAGKSTLMKILCGIIQPSAGTIRIDGTERHFADYDQAIAAGVGIVFQEFSLIPHLDAVENMFLARELRTRLGLLDRKAMRVRAAGIMRQLGVDVALDVPVNRLSVAEQQFVEIAKALSLQARILVLDEPTATLTPSEVEHLFKVMRELRKQGVAIVFISHHLEEIFEICDRITVLRDGQFVASCAVSEVDNDRLVEMMVGRRIEANFPPKPALNLAAPVVVEVEEVQLKRGGPVSRFALRKGEILGFAGLVGSGRTETVLAMLGAGPATRCKVRVDGVEKRFSGPDEGLAHGIGLLPESRKEQGLITSFSILQNISLNNYGKYAKGPWFIDLKKELAATETAMAQVRVKAQGPQARVDTLSGGNQQKVVIARWLNHDMQVLIFDEPTRGIDVGAKAEIYALMRAFTEAGASIIMISSELPEVIGMSDRVCVFRSGGIVATVEGEAINSETIMTYATTGRVEHVA
>NZ_CP024422.1|WP_099648361.1|942315_943290_-|ribose-ABC-transporter-permease
MSHDANTAATGKSGFSFGGLLHSPLALPLIGLIVVSCLMGLASDSFFSLGNIMNVLRQVSVVGILAVGMTFVILTGGIDLSVGAVMALVGTLAAGLMVNTGLPAPLALGSGLLIGLGIGLANGCLVAWGRMPAIIVTLATMGMARGLGLIYSGGYPISGLPSWISWFGVGRVGVVPVPVIIMVVIYALAWVLLQRTPFGRHVYALGGNETAARLSGVKTRRVKLAVYAISGLTSALAALVLTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGAIILLAIYIGREWR
>NZ_CP024422.1|WP_099648360.1|941551_942283_-|SDR-family-oxidoreductase
MSESLQGKVAAITGAASGIGLATTEALLDQGATVVMVDWNEAALDELAGRLGDRAIPQVTNLLDEASCNAMIPEILEKVDHIDILYCNAGTYIGGDLTETTPEAIDKMLNLNVNAVMKNVHAVVPHMIERKTGDIVVTCSIAGHFPTYWEPVYSGSKWAITSFVQGMRRQMIPHGVRVAQVSPGPVVSALLADWPEENLRKARESGSLIDASEVADAVVYMLTRKRTVTIRDMLVLPTNFDRV
>NZ_CP024422.1|WP_099648359.1|939901_941527_-|FGGY-family-carbohydrate-kinase
MDQYLIGIDVGTGSARAGVFDRTGALLASARRPIALHREDGGIVEQCSAQVWQAVCNSVRDSVAQAGIDPARVIGLGFDATCSLVVIGPSGQGLPVGDPAHPERDIIVWMDHRAVDQAARINAQGHAVLDYVGGRISPEMQTPKLLWLREHRPEVYAGAAHFLDLTDFLTWKASGALERSACTVTCKWTYLAHEGRWDDSYFRQIGLGDLAEAGFARIGARVVDPGTALGQGLTPDAAAAMGLRPGIAVAAGLIDAHAGGVGTVAAGGDATACLGYVFGTSSCTMTTTREPAFVPGVWGPYFSAMVPGMWLNEGGQSAAGAAIDQLVQLHPATARATALAQAQGKALPHWLADRALELAPSPSRAVRLADQLHVVPEFLGNRAPFADPHARAVIMGLGMETEPDALVALYVAGICGLGYGLRQIIETQARHGAPVQTIAVSGGAGAHPLTRQLLADATGLPVEVTECPEPVLLGSAMLGAVAAGLYPDLGRAMPAMSRIATRCAPDPATRALHDARHAAFLTLQRTAREIRRSTEELFADE
>NZ_CP024422.1|WP_099648368.1|952759_953914_+|glycosyltransferase
MARWIVAVSDYCSQVPPVQPAYPTAEAPPRSLPHERPDAIHVTGGYLERLPLAAVASGLADHAEIWSFAGRDGEADRETGRFQGSPDPQRPGLVRRVFRADTGPPYASRDALDFIAQVGPPDILCVWGLGVDAALLDACAASLKIYNSIDAPALRLDVALAARFDLFLTGAEWQSREIEARLPGARTLVLPIGPAFASGETFFPTGAAKDRDVVYVACAQPYKRHDILFDALERRPGTTALLIVGYGHLTEALRDRAARAGLDVEIIGPPGVPHDEVNRQINRARLGVVCGQDDGAPAILTEYQLAGLPVLANANLCCGLQFITPETGLAAPEGEAFVRALDDLLARHGDYDPRPAALARWGWQASIRTLSDELDTIRKARTPQ
>NZ_CP024422.1|WP_099650031.1|954015_956238_+|UDP-galactopyranose-mutase
MARFAQQYRLFFWEEAIPTDHHLPYLEFHAFEGTDIQSIRPRIPARWSPQDQARALSELLDQMIGLTGLRRPVLWFYTPMMWSIARHVDAAAVVYDCMDELSAFRFAPPELADAEAELLAAADVVFTGGHAIWEAKAHRHRNIHPFPSSVDVAHFSTARAPEVEAPADQAGLPRPRLGYYGVIDERLDLGLIAALAAAHPDWSIVMLGPVAKISDHDLPRAPNIHWLGQKSYAELPRYLAGWDVALMPFAMNEATRFISPTKTPEYLAGGVPVVSTPVRDVVRHYGELAAVHIAEGPQDFVRACETALAQAGAPGAWRDRADALLAELSWDRTFQQMGAHLDKAVRARLAPAVPVRVPVVPILRGARRHDVTICGAGFAGAVLARQFAEQSGRRVLLTDRRDHVGGNAYDCRDAAGLLIHRYGPHIFHTNSDEVFAWLGRFTEWRPYEHRVLARVRDMTVPMPINRTTLNRLYGLDMRTDAEAAALLARLAEPVAEIRNSRDVVVNAVGRELYELFFQGYTRKQWGLDPSELDKSVTARVPTRTSDDDRYFTDKHQAMPKEGFTRMFERMLDHPGIELALGTDFHDLGAGERGETVVYTGPIDAYFGHRFGELPYRSLTFRHETLDQPQFQPVGVVNYPAEDVPHTRITEYKHLTGQVHAKTSISYEYPSDRGDPYYPIPRPENQALFRRYEALAAAEPGVIFAGRLGSYRYYNMDQVVGQALAIHRRLTQRRSVPAVGG
>NZ_CP024422.1|WP_099648369.1|959494_961837_+|glycosyltransferase
MDGDDRTVWGAVPPQHFPQPAEDPARIRILFVMAWLVVGGEETEIRLLARTLPRDRYRIDVIPCFRKEGMPDQTHEQLAELGVHVDTTAYGLGFEETIDYLRRRLAGADVVVSCQNVADIYPALERLALRPPLIEHGGLVSEALAGPKHFTARYVGVCDSIRAAAAGKMPDRPQHAVEIPSMVDLDEFHPERRAATRAALGVAPDEVLVGWVGRLDRKKRVEDFIAAALRVVPETARIRFLIVGGPDAFMPDYAEELHRMAAPLGARVTFTGDRKDVPDLLAAMDVFCWLSRGEGMPHVIAEAGAAGLPVIATPDNGALQQIRDGESGLFVPHEDPGAVAAAILRLAGDPGLRRRLGGALQAHVRATYSAAVVVPQWRALIDAVLAERTPAPPPEIFASTVLGGWEASTHRLGNGRRLDVIAAVGHDRHAAQDYRQLAGLGIRACRDGARWHLIETAPGRYDFSSLTPMMAAARDSGTQVVWDLLHYGWPDDLDIWTPAFVNRFAAYARAVALHHRDLTDAVPFWCPVNEISFFAWAGGDARYLNPFCAGRGYELKCQLARAAIAAMTELRAVDPRARFVHSEPLIAIHHDPATGRPLWEAQGWHDAQFQAFELVSGRMWPQLGGDPSFLDIVGLNYYWNNQWIHGGPPIDMDHGLYRPLSDLLVEVAARYDRPLLIAETGTEGPRRASWFAWVMAEVDRARARGAPVEGVCLYPIANHPGWDDDRLCPNGLLGADPSGGARTVEPALAHAIARLSGPAAGNIFGAGAFSRMLHPVRSSS
>NZ_CP024422.1|WP_036762500.1|961833_962109_+|hypothetical-protein
MIPFLRMFLIHLWVACIAGAVAIAGLAMGYVSVWTFVWAAVIGVVLGVPGGLLNWAYLRPNRSRQIGWTWKIADLVRSAGRPRRADTQDPA
>NZ_CP024422.1|WP_028719254.1|962372_962669_-|photosystem-reaction-center-subunit-H
MDHSNHVRLQDDELTDAVLTGATVYGPDDDNLGHVAHVHGSGREARVVVEVGGFLGIGSKPVAVPAGQLDFMRDEAGTVHAVSTWTKDQLKDMPEHRD
>NZ_CP024422.1|WP_036762494.1|962694_962901_-|hypothetical-protein
MAKSFDPQEENEKFNVQQKAQDLKMGNADPVLNPKQMKGSNQPNAGGQNREAGDRKARQNDRATNGGE
>NZ_CP024422.1|WP_028719253.1|963053_963566_-|ferritin-like-domain-containing-protein
MADKTLDTLFHETLKDIYYAERKIVQALRKMARAAQNPDLKAAFEAHEEESQGHVERLTQVFELIGKRPRGKTCDAIEGIISEGQEVMEEFKGSPAHDAGLLAAAQAVEHYEISRYGTLKSWAQQLGLDEAVTLLDQTLQEESATDEKLTALAEAVVNAAANQEGDQKVA
>NZ_CP024422.1|WP_099648371.1|963907_965356_+|PAS-domain-containing-protein
MRGMDWSANPLGLPERWPAELRTVVSIALGSTQPMLIVWGPEQTVLYNDGYAKMCGLRHPAALGGSFRDLWFDIWDQVEPIIDAAYAGISTAMDDIGFIMHRNGYPEETHFSFSYTPVRNAAGEVLGMFCACNETTTEVMQRRRLQREQDRLRHIFENAIGAVAVTSGPDHRFTFANAEYELLTGNRGVTGKTVAEALPEVVDQGIIQLLDQVYATGRPYHGRSHQIDLQRSPNQPLEHRILDFVYYPIPGAEDEVSGIFVQALDVTEHHRLHHELAHRLKNQLTLVMAIVNMTFRAAEDLDDAREAVMNRIAVLSRAHDAIISGEVQGTTVDELMRSVTALQAGQSDKRLTCDGPSVHIAPKPSLSLSLILHELMTNAVKYGALSVPEGRVLVQWQVEGNRFRLVWQESGGPPVSQPERTGSGTALIEAGLNGTRNCAVTLTYAPEGLCCDIRAELVGVVMPGGEPATTPPVRRAAGSGGH
>NZ_CP024422.1|WP_080621221.1|965477_966110_+|TetR/AcrR-family-transcriptional-regulator
MGKGASVETGWRGSREGWLQAGYQALIDSGIDAVRIQPLAKQLALSRTSFYWFFEDREALLQALIDGWEERTTGPLVAATQEYADSQAESMLNVLACFLGDAFDSRLEFAVRSWALQDQEVARRVAAADETRLEALRRMLARWGHAAVDADVRARTIYLTQIGYISMRAQENMETRIARIPTYVGIYTGEDPEPREMARFAARLRANPPT
>NZ_CP024422.1|WP_028719251.1|966213_967212_+|ABC-transporter-substrate-binding-protein
MKRLALSAAVVMPLAVLAGPALADCSDLTIASMNWQSAELMANLDQFILNEGYGCDAEIVVGDTVPSITSLVEKGKPEIVPEAWVDLMPEIVAAGIKDGKIVEMARSLSDGGQQGWFIPRYMLDEHPNLNKISEILAHPELFPAPEDASKGAVFNGPAGWGGTIVTTQLAKAFDIEGHGFTLVDTGSAAGLDGSMAKAYEQKAPWLGFYWAPTSMLGKYDMVPVDFGMANDMAEWKRCTSVADCPDPKPNAFPVDNVFTLIASDFAKDADQGVLDYLKKRSWGNDTVNKMMAWMTDNQATGEEGAREFLRTHEEMWTQWVSPEAAEKIKSAL

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Crispr_ID: NZ_CP024422_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024422_3

1712801-1713021

Orphan

Consensus_repeat	Method
CCCAGGGAGGAGGNGGGN	CRT

5 spacers

The CRISPR arrays of NZ_CP024422_3

>merge|NZ_CP024422|3|1712801-1713021|CRT
TCCCGGGAGGAGGGAGGGGAGCCGCCTGACTGCGTGGCCCAGGGAGGAGGAGGGGCCCCGCGGTATTCTGTCGGCGGCTTCCCCAGGGAGGAGGAGGGGGAAGCCGCCTGAACCGTAAGACCCAGGGAGGAGGAGGGGTCTTACCGTATCTGAGCGGCGGCATCCTCAGGGAGGAGGAGGGAGGATGCCGCCTGAACCCGGACCCCAGGGAGGAGGGGGTC

>NZ_CP024422|3|2|1712801-1713021|CRT
TCCCGGGAGGAGGGAGGG	GAGCCGCCTGACTGCGTGG
CCCAGGGAGGAGGAGGGG	CCCCGCGGTATTCTGTCGGCGGCTTC
CCCAGGGAGGAGGAGGGG	GAAGCCGCCTGAACCGTAAGA
CCCAGGGAGGAGGAGGGG	TCTTACCGTATCTGAGCGGCGGCATC
CTCAGGGAGGAGGAGGGA	GGATGCCGCCTGAACCCGGAC
CCCAGGGAGGAGGGGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024422.1\|WP_099650063.1\|1710469_1711018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_080621828.1\|1713035_1713260_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP024422.1\|WP_028718071.1\|1713577_1714681_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP024422.1\|WP_099648821.1\|1719024_1720494_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_CP024422.1\|WP_028718077.1\|1707860_1708553_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP024422.1\|WP_080621824.1\|1707030_1707864_+\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|226191
NZ_CP024422.1\|WP_028718076.1\|1708678_1708966_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP024422.1\|WP_080621832.1\|1717189_1718995_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP024422.1\|WP_028718079.1\|1705800_1706583_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_CP024422.1\|WP_099648817.1\|1708962_1710447_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP024422.1\|WP_036761814.1\|1716809_1717193_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227749
NZ_CP024422.1\|WP_080621829.1\|1715331_1715838_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP024422.1\|WP_155992515.1\|1706715_1706871_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_080621823.1\|1705381_1705729_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099648823.1\|1723036_1724437_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|234950
NZ_CP024422.1\|WP_099648819.1\|1711642_1712419_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP024422.1\|WP_099648818.1\|1711028_1711697_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP024422.1\|WP_099648822.1\|1720490_1721876_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|184501
NZ_CP024422.1\|WP_080621835.1\|1721875_1722958_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP024422.1\|WP_099648820.1\|1715838_1716810_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597

Protein	Function_ID	Function_description	E-value
NZ_CP024422.1\|WP_080621828.1\|1713035_1713260_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	1.61521e-07
NZ_CP024422.1\|WP_028718071.1\|1713577_1714681_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.96769e-142
NZ_CP024422.1\|WP_099648821.1\|1719024_1720494_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NZ_CP024422.1\|WP_028718077.1\|1707860_1708553_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.12462e-82
NZ_CP024422.1\|WP_080621824.1\|1707030_1707864_+\|DUF1989-domain-containing-protein	gnl\|CDD\|226191	COG3665, COG3665, Uncharacterized conserved protein [Function unknown].	6.01696e-70
NZ_CP024422.1\|WP_028718076.1\|1708678_1708966_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.79413e-38
NZ_CP024422.1\|WP_080621832.1\|1717189_1718995_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.41702e-126
NZ_CP024422.1\|WP_028718079.1\|1705800_1706583_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	6.14106e-176
NZ_CP024422.1\|WP_099648817.1\|1708962_1710447_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP024422.1\|WP_036761814.1\|1716809_1717193_+\|cell-division-protein-FtsL	gnl\|CDD\|227749	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown].	1.04802e-06
NZ_CP024422.1\|WP_080621829.1\|1715331_1715838_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	2.03292e-39
NZ_CP024422.1\|WP_080621835.1\|1721875_1722958_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NZ_CP024422.1\|WP_099648823.1\|1723036_1724437_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|234950	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	0
NZ_CP024422.1\|WP_099648819.1\|1711642_1712419_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	5.87257e-71
NZ_CP024422.1\|WP_099648818.1\|1711028_1711697_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	7.51557e-60
NZ_CP024422.1\|WP_099648822.1\|1720490_1721876_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|184501	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional.	3.8386e-135
NZ_CP024422.1\|WP_099648820.1\|1715838_1716810_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	1.98245e-143

>NZ_CP024422.1|WP_099648819.1|1711642_1712419_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MLSYQHAYHAGNLADLHKHALLAWMLAYLTAKPKPLTYLETHAGRGLYDLSGPEAGKTGEAAAGITRALAQDWLSPDHPLRHALDQARSLYGPDAYPGSPLIARYFLRPEDNAHLAELHPAEHEALARVAGFAHLHRQDGLQMAQALCPPTPRRGLLLIDPSYEVKADYDTLPRQIGLLARKWNVGIIALWYPVLTDDRQVPMVRALRQSQPEALFSEVRFPPARPRHGMVGSGMVVLNPPYGLEAEAARLSALFARL
>NZ_CP024422.1|WP_099648818.1|1711028_1711697_+|N-acetylmuramoyl-L-alanine-amidase
MGPSPNHGDRRGQRPALVVIHYTGMADAESARARLCDPLAEVSAHWLISEDGRTEALVPEDRRAWHAGAGSWQGREDVNSRSIGIELANPGDRPFPEPQMAALESLLRGIMARWDIGPAGVIAHSDMAPGRKTDPGPRFDWRRLALGGLALWPEGLGKDRPLADSLPRIGYPDNPAALSAFRLRFRPWATGRETEDDRRAAAALAYSLANRAESLAASASSP
>NZ_CP024422.1|WP_099650063.1|1710469_1711018_+|hypothetical-protein
MRKLTILSVLAPILALAACAENTGWNPNYSAMHNGSPYAKYLQTREAALQGQGPVPQVIPVQLPAEAPQVVLPKRQTGAVRVVAAEVPANAQVATTGPYPGSTPVLVRYAHQQPQNPGATVYQRTGGSIAQAARLCSNYPSRDAAQRAFIASGGPLIDPRGMDPDGDGYVCGWDPKPFRVPR
>NZ_CP024422.1|WP_099648817.1|1708962_1710447_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSELNRLTIAEARDALAKGETTAVELTEACLSAIEGSAALNAFVHNTPDRAREMAKAADARIKAGEAAPMTGIPVGVKDLFCVRDVPSQSASRILDGFRPQYESTVTGNLWGQGAVMLGKLNQDEFGMGSSTENSVYGPTVNPWKLDDGVNRTAGGSSGGSAAAVAAGLCLGAAATDTGGSIRQPAAFTGTVGLRPTYGRVSRWGVIAYASSLDQAGPIARTVRDAAIMLGAMASVDPKDSTSADRPVPDYEAALTGDIRGKRIGIPREYRIEGLSDEIDALWSRTADMLRDAGAEIVDISLPHAQYALPAYYVIAPAEASSNLARYDGVRYGRRAKLAAGDGVVEMYEKTRAEGFGPEVKRRVMIGTYVLSAGFYDAYYNRARKVRALIKQDFDRAYAGGIDAILAPTTPSAAFPLGSMDKGDPVEMYLNDVFTVTLNLAGLPGISVPVALDAQGLPLGMQLIGRPWEEGALLNLAQAVESAAGFDAKPSRWW
>NZ_CP024422.1|WP_028718076.1|1708678_1708966_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MAITQDEARKVAHLARIAVDDADLPALAQELNGILHFMEQLNEVDVTGVEPMTGVEPMRLKRREDVVTDGDMQDLILKNAPDAREGFFAVPKVVE
>NZ_CP024422.1|WP_028718077.1|1707860_1708553_-|metal-dependent-hydrolase
MKLTWLGHSGFRLEIEQAVILIDPWMSGNPVFPDDRRDEAVRGATHILLTHGHGDHTGDTLSIARDLKIPVAGIYDLISTWQTHQGIEGIGFNKGGTVDLGGARVTMVNASHSSSFEGNEGPIYAGHESGYMIAGEGHVIYVSGDTDIMADMGWMGEYHQPDIGILSAGGHFTMDMKRAAWAARKYFDFKTVIPCHYKTFPLLEQDAQALRDGLPGVQVIEPEVLVPIAL
>NZ_CP024422.1|WP_080621824.1|1707030_1707864_+|DUF1989-domain-containing-protein
MTHRIPVDAAERRAVAPVVCYPAESLPDPQLFQLAEARRMARKTGECLVPPRRARCFRVPAGHFFRITCTEGPQVGDLNLWSAHDPSERFFSGKTRALHGTHLTRGDRMWSCLPFLRPMATVTEDTLEWYGIDEYGASVHDVIGTRCDPYTHKLLSGGDYHHCCHSNLTNALAEELNRPPAEVEGLVHDVLNVFMCTGFSRDTGQYLMKASPVRPGDYLELFAEIDLIGGLSACPGGDCGAEHSSDAAPCHPLLVEIFAPAVPTDRPVPQPSPYRWP
>NZ_CP024422.1|WP_155992515.1|1706715_1706871_+|hypothetical-protein
MTTLNATENLAVLKRSADKPAAEALAVLEQMFGYFSFEPMPLERAEERLAA
>NZ_CP024422.1|WP_028718079.1|1705800_1706583_+|succinate-dehydrogenase-iron-sulfur-subunit
MVQLNLPKNSRMRVGKTWPMPQGATNVRRFNIYRWDPDTGENPRIDTYYVDLDKCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGGNHLACIFGIDEVKGKEVNIYPLPHMPVVKDLIPDLTHFYAQHASVNPYLITETPTPDKEWRQSIEDRKKLDGLYECILCASCSTSCPSYWWNGDRYLGPAALLHAYRWLIDSRDEATGERLDALEDPFKLYRCHTIMNCTNTCPKGLNPAKAIASIKHMMVERIA
>NZ_CP024422.1|WP_080621823.1|1705381_1705729_+|hypothetical-protein
MHRRSRCSGQADGLMRRAGAPAVLALLALGACTPLTVEQAERACLDSARDATGPRTEMGVGVGSHGARGGFVRVGVSSDYIMGRDPAQVFQNCVKRRSGQMPNRPLYDQPGWRAR
>NZ_CP024422.1|WP_080621828.1|1713035_1713260_-|DUF1127-domain-containing-protein
MAVLDLNHGAARNHIGEGRVGTLVAGMRDYFARRALYRQTVRELNQLNGRELADLGISRSMIRSVAYEAAWGTK
>NZ_CP024422.1|WP_028718071.1|1713577_1714681_+|Mrp/NBP35-family-ATP-binding-protein
MAISQESVLLELRQIAVPGGGNLVSADMVRALSVENGTVRFVIEAADAATARALAPVEAEAERRLKALPGVERVQIVTTAPAGPRGPAPQVAARSGGDAPPSLKIGRHPTPQAGPAPVPGVARIIAIGSGKGGVGKSTLTSNLAVALARAGRRVGLLDADIYGPSQPRMLGLTGQRPTSEGQMIQPLHAHGVTVMSLGLMMKEGEAVVWRGPMLMGALQQMLTQVNWGELDVLLVDLPPGTGDVQLSLCQKAQVSGAIIVSTPQDVALIDARRAIDMFDKLKTPVLGLVENMSTYICPNCGHEAHLFGHGGVAAEARQLGLPFLGEIPLNLEVRLAGDAGTPVAAQGGPVAAAFDRLADRLIGGGMA
>NZ_CP024422.1|WP_080621829.1|1715331_1715838_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MARRFRGSEEVKVDAKGRVSIPAKFRRVFESCDPDWDTGKRAQLVIVYGTRDWNYLQLFTMTAMEEIEDGISRMPRGSAARNLLENIYQGHADEAEIDGDGRLVLPQKLREKIGLTDSAFFISAGDSLKVWNPAAYADEERRLEELVPEFEPGADPLSLLTPSGGAEV
>NZ_CP024422.1|WP_099648820.1|1715838_1716810_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MAAASDPHVPVLLGPLLRAVAPVTGVWVDGTFGAGGYARGLLAQGAQRVIGIDRDPSVFRMARDWAGEYGDRLRLTEGTFSDLDRLAGEPVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMRMGGDGPTAADLLNSAPEAVIADVLYLYGEERASRRIARAIVAARPLTRTGQLSDIVAGCLPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLEDRIVKRFMQARSNSAGGGSRYAPEVEQDQPAFTLPFRRAIGPDEQELAANPRARSALLRVGIRTDAPAGRVDPQALGLPRLDRGA
>NZ_CP024422.1|WP_036761814.1|1716809_1717193_+|cell-division-protein-FtsL
MRSVLYLLTTLAVMALAFWAYRENYRTQAALSEMTAVQRQIANLREDLGVLRAEWAFLNRPERLRELVNLNFDKLRLVPFGADQFVDVGQVAFPPPRAAATAGFDPANPPIERPAGFPPLRPQETTP
>NZ_CP024422.1|WP_080621832.1|1717189_1718995_+|penicillin-binding-protein-2
MIRTPLRPLARILRAREKGENPDAIEAENRAQRHAQIQERARGHAQRRLLFMSCAFAAAFAVVGVRMGAMAASQPVEPRAQISRAQIISQRADITDREGRVLATNLLTHSLYAHPRQMVDPKGAAQKLAAIFPDLDVERLTADFTGKRSFLWIKKKISPEQMQAVHDIGEPGLLFGPREMRLYPNGQIASHILGGATFGREDVASAEVVGVAGVEKAFDRWLRDPANDGAPLTLSLDLSVQAAMEEVLSNGMKVMNAKGATGILMEVKTGEILAMASLPDFDPNDRPRPLLKGDPSDSPLFNRAVQGQYELGSTFKIFPVAQAIDLKLVSPNTLINAKAPMKIGKYLINEFRNHNYGTLTVTDVIVKSSNVGTVRVAQLLGPERQRDFLEKLGFFEPTLIEMSEAPTGKPLVPKRWPAVTSATVAFGHGLAASPLHLAAAYATVANGGKRVTPTLIHDRVRREGEQVLSPQAARTAVQLLRQVVVRGSGRSANVEGYEVAGKTGTADKPRPSGGYYGNKVVSTFASVFPASDPKYVLVLSLDEPTSVAGGGESRTAGMTAAPVAGETIRRVAPLLGLRPITDKPLPMVERPAGDALKLVSN
>NZ_CP024422.1|WP_099648821.1|1719024_1720494_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MRLSLLGLRGDKGRDPEVTGVATDSRQVRPGHLFAALPGSVAHGGEFIQYALRQGAAAVLTDRQGAEIAAGVLAGSDAALVVAEDPRAALSGAAALWFAGQPEVMVGVTGTSGKTSVASFTRQIWQALGHKAISLGTMGVQGDYQAKLAHTTPDPLTLHRILAEAASAGVTHAAMEASSHGLDQRRLDGVRLKAGAFTNFSQDHLDYHKDFDAYFAAKALLFNHILDEGAAAVINIDDPRGREMARIARDRGLVLTTIGKAEGADLRILGQRYDATGQDLRFSWQGQAHLVRLALIGGFQVENVLAAAGLAIAAGDLAERVIEALPGLTTVRGRMELAAMRENGAAVFVDYSHKPGALASALQSLRPHVMGRIIVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRTEDPAAIRAEIMAGAGPEAHEVPDRAEAILRGVDALQPGDALLIAGKGHETGQIIGSDVYPFDDAEQASVAVAALDGKI
>NZ_CP024422.1|WP_099648822.1|1720490_1721876_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MTLWTSTDAAAATAGRATRDFAVSGVSIDTRTLQPGDLFVALQAARDGHDFVAQALDKGAGAALVSRIPEGVAPDAPLLVVPDVLAALEALGRAGRARMRGRVIAITGSVGKTSTKEMARIALAGQGVIHAAEASYNNHWGVPLTLARMPADTDFAIVEIGMNHPGEIEPLARLARPQVAMITTVAAAHLEAFGAIEGIAREKGAIFAGLTQPGTAVVPEDLPVTQLLRDCADAAGAIVIGFGQHGIARPVTAETTDGATRVRARVLGETVDFTLATAGTHFVMNAVGILAALSAAGADVAQAARGLSDWRPPLGRGAVEDLGGIRLIDDAYNSNPTSLAAGLATLARLTGGRRVAILGDMLELGPDEAAMHAGMAQDPAMAQVDLVHTAGPRMRALHQALPASRRGIHADSAAALADRVGDLVAPGDIVLVKGSKGSRVSTVVDALRRTGQSTAPGERNA
>NZ_CP024422.1|WP_080621835.1|1721875_1722958_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYWLTSLSDGGDFFNLFRYITFRAGGAFFTALIFGFFFGRPLIDLLRRKQKKGQPIRDDGPQNHFSKAGTPTMGGLLILAALTIGTTLWARLDNGYVWIVLLVTLGFAAIGFADDYAKVTKQHHAGLSGRVRLLIGLCIAALAGAAAAWLHPDALSGQLALPFFKDALINLSILYVPFAVLVILGAANAVNLTDGLDGLAIMPVMIAAATFAVIAYMVGNANFANYLGVHFVPGTGELAVFVAALIGGGLGFLWYNAPPAAVFMGDTGSLALGGALGAIAVVTKHEIVLAIVGGLFVVEALSVIIQVLYFKRTGKRVFLMAPIHHHFEKKGWGEAQIVIRFWIIALILALIGLATLKLR
>NZ_CP024422.1|WP_099648823.1|1723036_1724437_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MIPVQGVQNQTIAVLGLGRSGRATVAALVAGGARVVVWDDGADTRAQAEQDGMTVLDLTREAHWDGIDALITSPGIPHLYPRPHPVIACAYDLGVPVDNDIGLFFRSFATQGWDAFDTPPRVIAVTGSNGKSTTTALIHHILQEAGRPTQMGGNIGTGVLSLDPPHDGEVIVLELSSYQTDLARALTPDVAVFTNLSPDHLDRHGGPGGYFAAKRRLFAEGGPDRAVIGVDEVEGRSLAGQLGMGPSDDRVIRISSGQKLECFGWSVFARKGFLAEWRKGRQVAAIDLREIAGLPGEHNHQNACAAYAATRAIGIAPREIERAFHSFQGLPHRSQRVAEINGVAWVNDSKATNVDAAAKALTAFRNIRWIAGGMGKDGGIEALTPFLGAVVKAYLIGHSGRDFALQLGQTPHEVLETMDQAVARAAAEAQPGETVLLAPAAASFDQYPNFEKRGEHFTALVRALQG

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Crispr_ID: NZ_CP024422_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024422_4

2493898-2494230

Orphan

I-E

Consensus_repeat	Method
CTGTTCCCCGCATGCGCGGGGATGAACCG	PILER-CR
CTGTTCCCCGCATGCGCGGGGATGA	CRISPRCasFinder
CTGTTCCCCGCATGCGCGGGGATGAACCG	CRT

5 spacers

The CRISPR arrays of NZ_CP024422_4

>merge|NZ_CP024422|4|2493898-2494230|PILER-CR,CRISPRCasFinder,CRT
CTGTTCCCCGCATGCGCGGGGATGAACCGTCGGGCGGCTCTCTGACGCAGACGCTGCAACACTGTTCCCCGCATGCGCGGGGATGACCCGCCTCTCGACCTCGGCCCGCAGGTCGGCCTCTGCTGTTCCCCGCATGCGCGGGGATGAACCGTGGGTGCCGCATGTGGAGCAGCGCGGTGACACTGTTCCCCGCATGCGGGGGGATGAACCGGTATGGGATGGAGCAAACTGGGTGACAGCGGACTGTTCCCCGCATGCGCGGGGATGAACCGGCAGAAACCGCCGTCGCCCTGCGGGAGCCCACCTGTTCCCCGCATGCGCGGGGATGAACCG

>NZ_CP024422|4|2|2493898-2494230|PILER-CR
CTGTTCCCCGCATGCGCGGGGATGAACCG	TCGGGCGGCTCTCTGACGCAGACGCTGCAACA
CTGTTCCCCGCATGCGCGGGGATGACCCG	CCTCTCGACCTCGGCCCGCAGGTCGGCCTCTG
CTGTTCCCCGCATGCGCGGGGATGAACCG	TGGGTGCCGCATGTGGAGCAGCGCGGTGACA
CTGTTCCCCGCATGCGGGGGGATGAACCG	GTATGGGATGGAGCAAACTGGGTGACAGCGGA
CTGTTCCCCGCATGCGCGGGGATGAACCG	GCAGAAACCGCCGTCGCCCTGCGGGAGCCCAC
CTGTTCCCCGCATGCGCGGGGATGAACCG

>NZ_CP024422|4|3|2493898-2494226|CRISPRCasFinder
CTGTTCCCCGCATGCGCGGGGATGA	ACCGTCGGGCGGCTCTCTGACGCAGACGCTGCAACA
CTGTTCCCCGCATGCGCGGGGATGA	CCCGCCTCTCGACCTCGGCCCGCAGGTCGGCCTCTG
CTGTTCCCCGCATGCGCGGGGATGA	ACCGTGGGTGCCGCATGTGGAGCAGCGCGGTGACA
CTGTTCCCCGCATGCGGGGGGATGA	ACCGGTATGGGATGGAGCAAACTGGGTGACAGCGGA
CTGTTCCCCGCATGCGCGGGGATGA	ACCGGCAGAAACCGCCGTCGCCCTGCGGGAGCCCAC
CTGTTCCCCGCATGCGCGGGGATGA

>NZ_CP024422|4|3|2493898-2494230|CRT
CTGTTCCCCGCATGCGCGGGGATGAACCG	TCGGGCGGCTCTCTGACGCAGACGCTGCAACA
CTGTTCCCCGCATGCGCGGGGATGACCCG	CCTCTCGACCTCGGCCCGCAGGTCGGCCTCTG
CTGTTCCCCGCATGCGCGGGGATGAACCG	TGGGTGCCGCATGTGGAGCAGCGCGGTGACA
CTGTTCCCCGCATGCGGGGGGATGAACCG	GTATGGGATGGAGCAAACTGGGTGACAGCGGA
CTGTTCCCCGCATGCGCGGGGATGAACCG	GCAGAAACCGCCGTCGCCCTGCGGGAGCCCAC
CTGTTCCCCGCATGCGCGGGGATGAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024422.1\|WP_099649313.1\|2486787_2489220_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649316.1\|2491132_2492683_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP024422.1\|WP_157767355.1\|2476332_2477298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173874
NZ_CP024422.1\|WP_099649310.1\|2497319_2498546_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP024422.1\|WP_099649310.1\|2472056_2473283_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP024422.1\|WP_080622741.1\|2494869_2495169_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NZ_CP024422.1\|WP_099649319.1\|2501446_2502049_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP024422.1\|WP_157767358.1\|2503431_2503623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649314.1\|2490368_2490731_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP024422.1\|WP_099648499.1\|2489246_2490179_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP024422.1\|WP_157767357.1\|2498578_2498731_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649322.1\|2503888_2504419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099648611.1\|2495319_2496509_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP024422.1\|WP_099648849.1\|2474117_2475056_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP024422.1\|WP_099649315.1\|2490724_2491078_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP024422.1\|WP_099650099.1\|2494531_2494834_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NZ_CP024422.1\|WP_147405548.1\|2499146_2500103_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_147405547.1\|2492751_2493153_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649320.1\|2502969_2503305_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_157767356.1\|2477326_2486788_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215507

Protein	Function_ID	Function_description	E-value
NZ_CP024422.1\|WP_099649310.1\|2497319_2498546_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.47846e-65
NZ_CP024422.1\|WP_099649316.1\|2491132_2492683_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	7.29002e-117
NZ_CP024422.1\|WP_157767355.1\|2476332_2477298_+\|hypothetical-protein	gnl\|CDD\|173874	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of a cellulose-binding protein from the hyperthermophilic bacterium Thermotoga maritima (TmCBP) and its closest related proteins. TmCBP binds a variety of lengths of beta-1,4-linked glucose oligomers, ranging from two sugar rings (cellobiose) to five (cellopentose). TmCBP is structurally homologous to domains I and III of the ATP-binding cassette (ABC)-type oligopeptide-binding proteins and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. Ligands are then transported across the cytoplasmic membrane energized by ATP hydrolysis or electrochemical ion gradient. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.17587e-25
NZ_CP024422.1\|WP_099649310.1\|2472056_2473283_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.47846e-65
NZ_CP024422.1\|WP_099649314.1\|2490368_2490731_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.75024e-14
NZ_CP024422.1\|WP_099648499.1\|2489246_2490179_-\|IS5-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.97221e-53
NZ_CP024422.1\|WP_099648611.1\|2495319_2496509_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	6.6841e-37
NZ_CP024422.1\|WP_099648849.1\|2474117_2475056_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.47912e-21
NZ_CP024422.1\|WP_099649315.1\|2490724_2491078_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.79587e-49
NZ_CP024422.1\|WP_099650099.1\|2494531_2494834_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.85985e-32
NZ_CP024422.1\|WP_099649319.1\|2501446_2502049_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.31743e-07
NZ_CP024422.1\|WP_080622741.1\|2494869_2495169_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	3.20635e-22
NZ_CP024422.1\|WP_157767356.1\|2477326_2486788_+\|hypothetical-protein	gnl\|CDD\|215507	PLN02939, PLN02939, transferase, transferring glycosyl groups.	0.00845714

>NZ_CP024422.1|WP_147405547.1|2492751_2493153_-|hypothetical-protein
MATTYRARIGQLIAGLSENDRVEEAKEALRALVEKVEPVPVSVEESESGKPGLAIHLHGALASLLRLACGLPVHEVVGAVAQTQKAPRKAGRGGSNSVQSAEADLQCSDIVEELVLVAGARNRSHLPALKCAV
>NZ_CP024422.1|WP_099649316.1|2491132_2492683_+|IS66-family-transposase
MSAVPSIDLSVIPESQHAAVLAVLRERDALRESNRRLEHLIAELNQVVHGKRSEKLNDDERQLAFEDLEAAVAEAETRQDAEARPCTPSRRAARRNRGHLPESLPRVEQVIEPDSLLCPCGCGEMHRIGEDRTERLDIVPAQLRVIVTVRPKYACRRCGEGVSQAPAPAHLIEGGLPTEGALAYVLVSKYADHLPLYRQSQILARAGVELHRSTLADWVGSAAFHLGPVVDRLAEHLKTSTKLFMDETPAPVLDPGRGRTKTGYLWALARDDRSWGGGDPPGVVFTYAPDRGGENAERILQGFDGILQLDGYTGYNRLTRPSRTGGAPITVAHCWAHARRKLKEIVDRDGSQIAAEGLRRIAELYRIEAEIRGMGPGQRLSARQARSAPLVAAFGEWLQPQCRRISMKSRLGEKLAYIHRHWDGLQTFLRDGRVEIDSNSVENLIRPIALTRKNALFAGHDEGGRSWACIASLIATAKINGVEPFAYLKATLQAVAAGHPQARIDDLLPWNFKPAS
>NZ_CP024422.1|WP_099649315.1|2490724_2491078_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLMPSQGMRILVATKPVDFRKGHDGLAALAQSMLAEDPFTGTIFVFRSKRADRLKILFWDGSGLVMAYKRLEADSFTWPAVRDGALTLSRTQFEALFAGLDWRRVRPLEIPKPDLAE
>NZ_CP024422.1|WP_099649314.1|2490368_2490731_+|transposase
MPGHRRWPDEVKARVVADTLEPGATVNAVADRYDVQPNQLSAWRRLAKQGKLVLPAIAPDAPVFAPLVVCDPAPAPPSCDRRPAEEQIRIVIGEVRLELAADTPAVRLAEIVRALGAAGC
>NZ_CP024422.1|WP_099648499.1|2489246_2490179_-|IS5-family-transposase
MTKPEPARYRTTNWKSYNAALRRRGSLLIWLDRDMAWLASGAGRPGRPPVFSDAAIQFCLMVKVLFGLPLRQTTGMVASILEMAGLDWPVPDFSTLSRRQKTLAVQISNRRAPGPLNLLVDSTGIKFLGDGEWLARKHGTHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPGLLDQIPPAEQIGTVTGDGAFDTRRCHTAILDRGGTAVIPIRRNGRLWKEDCPAARARNDILRATRRFGRANWKHWSGYHARSRIEARMRCLKSFGERIASRDPDRQTAEVHIRIALMNRFNALGTAEIKRVA
>NZ_CP024422.1|WP_099649313.1|2486787_2489220_+|hypothetical-protein
MASHHKIALDKDTLVAPRFRIIPNGIDGDRLRGTLLISLVPGSYYALEAWPSGAAELIRTPVGKADGTLKLSVRLEPTPRSEESAAVVRALNVRLAAPALAKAMDNGKQSLVDLWASSLVGKLEGEAAKPVWEHLLRTLDQVQSGSALDANLKPTPAKSAEFGDRGQLSPTAAMQTRTCEAVLSTRYSDAALVLDRRRGRALAESLKCRGERDCLPEKVPDLGEAAPPVRKMEDVEEDERSRIRNEKDFLKKIHLLAEFIDIQDVSGASTSALLKAKEEYGKRLQEILNEIGDPLGQPDAWAEATRDPDFIKAALAANTDAQLKRRKMARWNQLRNTALKGAYKEAEKQYNDAKNAIRSSEAQQVCRLTKNEVSPEDDAELLGHVRAASEYGSWSEHQDEPEDSGRVLSTAEILSGQLTKNKERAGLAFFSIEGNPSLARVFGLAFDIVAEFEPGVLGKHDYAAVCALPEDAEPDARTIWTRTKLRTSDGGKQHGWPCTMGEYLLWKQGGTCLSADAIGQFEGVMTMGGVASAGGAAGLPRFDITSLDVGAALEAERSWLQAIEAQEGDTNRNDAQWHAVCEALSVGPDYQSNGLTLLCRSAVSDAIRKLAALKAKICDPKAVSAGGTCVPSDLQIHDAEDLTNGYRLIVGVPDAANGSNPGRWGTEWRPLMGRTTRFGTSGKPAQIVEELLALIPNRAELDGAQLAIPARELATSGTTVETIVDETFAQWDGTPLGVACGKVPGEPETQPDSNCFGRTFNLLTNGLRPVHLRNGRPYRFGLQVVFSGGRAVPLEELPLEWTGVVAELTF
>NZ_CP024422.1|WP_157767356.1|2477326_2486788_+|hypothetical-protein
MDGAGDNPVSRSADTFRITRRAFIGSAGAGAVVAGTSAWGNEDECLHDQRLTYEWADNAETGDRLLEIHLITRKHLEPDAGESQASVETRAAATEERSGISWQLDLRAFGPDARVVLFRSATPGLRDRLVIQNVGYGRLAGRRITFVFSRRETLLDCGVRRRIVLEMETTVWSSKAGATSKSEFSLEAENVRPRKWILFRDFVGSAQGQIGPRRFVQTIPAIRVANTAKLMFNGLITVVPGSDDRLVEVFFDKSLIWVIDARQRLAALSGRVRLTELELFWTREDSNSPSQEREAMLFGQATLRPDAANGLRIGGGGGPTLSFTGVEVTNQPLLVLFRAGGADPDRVEAGRIRGEAVLAGRWKGASFLGGEGIGEVGPLPDLEGSVLERIDARGPITETSLNTPPGSISFQARYVANSLATNAQSPVGPLSLSGLADRDDDEPVAGKFPSRRGWPVTALWSWTPTKGRRQMPAADFVEAGVALVEAGIALPGAAWSRLTFAGTELRIHYTSERLGAPPIGSHLDLGATNQVGLAVLDLARARLRASQSDQLLALSFRFSDLSLRIDGAELTLVGSTPECSLAARPRSAQEDLTNTDRGPAFADQVSQDRRPVLVVEFPPQHLFEEASFRPGRSALPDVVLNTGMIIDRKTGAVEFPKDKPTTYKIDANTIELDPDRRSHVVDALDVLARSGKPALLRNVRMHLLKEKAKLLPETAKEKPDITEEEKKKNQAENFRRKAFADFARKVARLRRGLSNVTSDQRIYIGPFAMDVDFMARVRRLFDLGAIARARAVIDDMFAAIRQERQRMGLSYPVGADLDAALKVEVQLQAVVPLYQQFRTFYRDQLLASFSRPGSTSLPAGFEATSEAPGEVEYIDFASDHPLSSDLRRKRLEVIRKAFIADLQGAEALEGPKRGRLANHSRLAFRVNCLDVLEAAQAAQAAQLDGPEDAEVRLPRRALHFDLNELLQFRGMELAVTARAEIPYEPDAHGRIGGRAVRLSDISPGAMMARLGFTRGPNTSVAIRLAEIAASLRAPTAFETAIEMPARVTLSPHQNAVVLTPQQPEGMAQVFDLALGACSATTGPATGAVVRRLWAARFVTGQDGLDLDPGLRAVHSPDLRPGALLTRFAEREKDVLPMTQPPGGPLDPWFLSGTQSEATPPTLQELNALFSGHDDVCEAAANPAVRDLPGILRAFCHRVGLIRSKRRITFRNGLDARDRHQLVMLSSAWGLPIKYAAQGDTKPTAQPEPEWQLWDVLPGNGIYAPRSLDVTELTLTTLGGVLRHDTGFEPPTAPLFWRSRDGVYDAFSVERWQHWINLGRDIFTEVVYKGFLLPLGIRASLVKVTEREFWIDPKTGAITAPLRQRMFIRVARPEKLFPAVRQPSNGRCFPIRRLELLTTVTPDIVDPYSEAAQNEQSEELPSGRLLLKGARGLVFWPRTLKARQGDIRFEMTVDGIRSDLPLIFADQTAINDQVTMNALVAYYARLASPAEGMSVEPINHRRTLQLRGAAMRYAPEVKAGSASFQTEHWTLHATGGANAALPTVDNPAAESGTLGTIAMHNDDFNFDAVRQANDQPPIYPAIASARMYLTQTERLIGRRLGAVDTYFDGAFVRDGLGETEQKENSAEVVLVLAKGVALKMGDKGDQSGGIFRPAGHVVGLSRAKGALTLDNAPTVPPVAGMNYTLPLMSPLFDERKIREAASAAEMRFGGKASERKPSGTELEELRKYYQSLLSSDAKICGLVSVKELIGLCQGLGYPIDDAPALTEALEFGAAGKAGAEQIRKEIIIPLAAAIRSVREEWAALEQRINDELARGIGAGNAGQDADKKVTGFEIRKVFPELYQSLADLEAALVQAESETDPVLFGFELGACYSAGMRFLGALERAASNPGQALEALVSQTFAGLLALVDALRGGLKKYFDPLFENLIGDLDAAISEVIEDGFKQGAPFIRRAFLSFPQPYIGSATAPDKWQHCLEGFVPGADDAEAVLTAFVKHALLAIAKGGRLDAMTLINDWLDDSDAKIEFSLRFGDSLKELRQRLNAGIKALADAAEASIEADSASEALSVELDAAVGKLKKALDEIFFLPVGDADDFIASGPPREQICKRYISGVLVAMAEADMTDCITGLPLGYPRQILDFLSGLNWKAPGALPDIDTDLTGWFDPISRAFNGFLGDVGLPLPDCATFNSLWQVIQAALNALADVTALINLVPTDWQHPTRAETLQSQKYDNPQELLVLPGATSPSVVLTLLLARAYLVRINADMGKAEVPVTQARDAIARLPGDAAAKARDALQMQLNNSVAVRGGLNTLRVVYESAFDAVMRDAEALRRTVGSMRRAAKIKIEDACSGKIPADDIMALANLPRDVQALVVRREHMLRELDKAVKATREQLDELRETEMLVPLFADLAAHFDELGLPESSQSELPDWATGAQDQIRRLQDALAAASEHVVGLADSLKELLCQLIALAGKALDVAKKAQDSLSESLSETAVADLPPEVRQIGERMRRVWNAQQIAMRLEDAGKHLIQVREMKETLCAEDANYPHLGAIEEIIVQGASPFSLLEPKTGMPPLAAARAEMRGVEDALKDIAAELRLLLEAAPREAAETLLLNVAARVVALQKDVQPGNPLASQGKLGIVPFYERLKKVRGEAWEAAGSTGVLSDKLRGQLTVARGPYRPGNEHATLPNDDRLAGDVEMLAAIRKVAEENGNLSQPQRLFLHAFLQEWGTGQATPLLIGGNIAELVQDLFAGKLYRFIDFARLRKEFEGRLLALVPTKQKLDYTFGLPLGPEVNAATMGIFRPAAGCQLGVGASIEINLAGAVKDAGEDETPLVSGSAVGTLGAFEIKLVGDLFDALTLRFGAARFEAPIGGTPRFEITYLGHTIGEQLKFVEKLQAYLSPKDGSGAILRFDPARPGVEAGYRLQLGDFAVGNLAFTNVGLEATAVLPFSDEEAVFKASLSSRASPFTLTYAPYGGSGFFAILANVQGVIGFEASFEFGGSGVFAFGPLTGQGRLMSGVYIRQLTLNGMRLTEISMTFFAGGSASIWIFNFTAALSVQLGMVNGNMSGQANFSFSFSMGLCDYKYSISVSRSEGAGFSGEKRTSSLGFDMRRFAGLGQTGDVTEPPNAFGARIENRARCQGESWNTYKSYFIDREPPEEYF
>NZ_CP024422.1|WP_157767355.1|2476332_2477298_+|hypothetical-protein
MFFFLFLQPSLSFAGIQFTCARSNGHVTFLVEGSQSRISSHYNWFRADALRDRGAAQGMLEPLFLTDVPGKPARGWLARRAVWNADFTRLEIEVERLAAWSDGKRVTAADLALSFQIALDHQNLDGPHLADFRRLIKAVRVVGVRELQLDFTEPAPQFIEQHLAPGASDGFVVVPAHIWGEINPERFDNPRPIGTGPYLFGEDGQWRRNDRWWARQAGKAQLPAPRALVWVAPIKHPHEPVLRWIACGGVDLVRGLPPGEMAGLAAISARLAPIFGVGQSEAGLVSSANWSGWPRVSDPKTEDWTSGQRAQQVILRLRPSN
>NZ_CP024422.1|WP_099648849.1|2474117_2475056_+|IS110-family-transposase
MAKDTIGIDVSKDRLDAFWHSRTEACCLPNTPEGFGQLCAWLGKEEDVLIVFEATGAYHRGLERHLGLAGLPFIKVNPKQARRFAQAIGRLAKTDSVDARMLARMGVVLDLTPQVVEGEDVHDLRELLTARRALIKDQVTAKTRLATALNPLVREQLGRRIEDIGADIQALDEVIAQIARQRGTLEERIRRLMTIPGIGRLTATTMLIDMPELGHLEGKKITALAGLAPMTQQSGKWQGKERITGGRSSIRRAIYMPALVAIRFNRDLHDKYQQLLKAGKAKKVAITAIMRRIIILANTLLRERRDWLPDRP
>NZ_CP024422.1|WP_099649310.1|2472056_2473283_-|IS256-family-transposase
MKQNTDSSSFSLLPDAGAYDPIEDRLRANVRATIEAMFEEELADFLGRLRYGRGNERAKGYRHGHRDRQLTGTFGTETVRVPRARIENEAGKITEWRSKALPRYRRLTKKAEALIAAVYLAGTNTRRVKRALFGLFEGAVSKDVVSRAWRKVKVDWDAWSTRDLAEEDIVWLILDGTVIKTRLDRKATNISVLAAIGVRRDGQKVLLAIRNMGGESTAAWGSFLADLDARGLRRPEFVIVDGAPGLEAALVALWGEDLAIQRCTVHKHRNLLGHAPKRLHDELSEDYRDMIYADSAAEIETRRKAFLRKWKLKCRAVADSLEEAGDRLFSFTRLDPSQWKSARTTNAIERLNEEFRRRIKTQTVLPCAETVPMLLWALLASGQIQMRKVDGWETLSQPLEPMSLDLAA
>NZ_CP024422.1|WP_099650099.1|2494531_2494834_-|DUF86-domain-containing-protein
MVTAAADALAFTEGMAEDDFLTDLRTQRAVVMSLMIVGEAASRILSDHPDFANAKPAIPWRGIRGMRNRIAHGYFDIDLHVVWTTVQTELPALIKHLSQP
>NZ_CP024422.1|WP_080622741.1|2494869_2495169_-|nucleotidyltransferase-family-protein
MQSQTPSQALQYGRNLIRELAVRHRTVNPRVFGSVLTGRDRADSDLDVLVEPLPETTLFDLGGLQDALEEALGVRVDVKTPMDLPPHIRAEVLRQALPV
>NZ_CP024422.1|WP_099648611.1|2495319_2496509_+|IS3-family-transposase
MKKARLTEEQIIGILQEHDAGAKCADLCRKHGMSEGTFYAWKAKYSGMTVSEAKRLKALEDENAKLKRLLAEQMLDMAAMKELLSKKLVTPAVKREAVAHLKAHLGLSERRACQIAGADRKMVRYQSQRAPDTALRGRLRDLANERRRFGYRRLFVLLRREGESSGINRIYRLYREEGLTVRKRKARRKAIGTRAPILMEARANARWSLDFVHDQFACGRRFRVLNVVDDVTRECLAAIPDTSISGRRVARELTALIERRGKPGMIVSDNGTELTSNAILKWCAEHKVEWHYIAPGKPMQNGFVESFNGRMRDEFLNETLFRNLAHARDLIAAWVTDYNTERPHSALGYQTPAGFALHLTTAIARPAARDESSARRAIAQPTPKGVNQLPAPIAAG
>NZ_CP024422.1|WP_099649310.1|2497319_2498546_-|IS256-family-transposase
MKQNTDSSSFSLLPDAGAYDPIEDRLRANVRATIEAMFEEELADFLGRLRYGRGNERAKGYRHGHRDRQLTGTFGTETVRVPRARIENEAGKITEWRSKALPRYRRLTKKAEALIAAVYLAGTNTRRVKRALFGLFEGAVSKDVVSRAWRKVKVDWDAWSTRDLAEEDIVWLILDGTVIKTRLDRKATNISVLAAIGVRRDGQKVLLAIRNMGGESTAAWGSFLADLDARGLRRPEFVIVDGAPGLEAALVALWGEDLAIQRCTVHKHRNLLGHAPKRLHDELSEDYRDMIYADSAAEIETRRKAFLRKWKLKCRAVADSLEEAGDRLFSFTRLDPSQWKSARTTNAIERLNEEFRRRIKTQTVLPCAETVPMLLWALLASGQIQMRKVDGWETLSQPLEPMSLDLAA
>NZ_CP024422.1|WP_157767357.1|2498578_2498731_+|hypothetical-protein
MGGCQFTRRLRRRPISTTSETRPHTKMDSTVRYLGVDLDDALTLSEGIDL
>NZ_CP024422.1|WP_147405548.1|2499146_2500103_-|hypothetical-protein
MVEDFARILHSGALPGLGRSVAAEGGFKGWVTGGAYAPKISDNGDLLLERVSVESFTRAVSFDYDRFALAAHESRIVALSEREKFGAVGWPILKQYYSAFFAAHAVMRSRGAGVVRIDSDQARAIKTVMQAYLGSNENFSPGTYYYSISKGENDASGEITVNFSRSNDGKGVHEGFWAAFVKYIEREASRSAQLGLPDNQDFISYSIDLKQSVMSGEMVWISKVRNEINYQHDYQSWMPMSKKSISNLAIPRTAEGYRLNARLDVSRSKDPIKAFFCVCCYISELNYLIAKRVAGNSKAGGTFGQKWRRLIATTDAAA
>NZ_CP024422.1|WP_099649319.1|2501446_2502049_+|helix-turn-helix-transcriptional-regulator
MLRMQTILDMDTLLAARRARGMTQGNVARATGISVPTLRALERGEGGLGPLVAIMGVLGLRWGWVPHGEDAAGALAGRRKARGISQAELARRIGCSRPTLIALERRLAGSVATLARALQILGLRPMLRGVAPVGRGLVPARNAPARDLVMTPPELAAAVIGHFAPGLSGSVLDPARGQGAFHDGLCMAPAVKASERRMRK
>NZ_CP024422.1|WP_099649320.1|2502969_2503305_-|hypothetical-protein
MNQSSPPSEWPELLIELRKLTALIAPLRALLAQEETPGLSERIDRFVAEITRVGDQVERAALAMEAEKQTRDLTRWIAQELMGQRRDITTIQHDLSRILLLLDEPLDGQSH
>NZ_CP024422.1|WP_157767358.1|2503431_2503623_-|hypothetical-protein
MSDMLSPLELRLTQQFEQSLARQETRIEELEARVRLLETERAALTTMLDFWAMLQKPQAFSQG
>NZ_CP024422.1|WP_099649322.1|2503888_2504419_+|hypothetical-protein
MFTGLDRLKADRLVIDLMNPDSKLTQSKCHEVDQSLAVGHIALCPKLLRQGSNLFRPGRRQQKSLPFGLASHLGQPVRQLDELAPVMRHRIRPTEPAIDRIQIMMPELLLDLHRWMRVVRRDGGRCAPDCPGHQDIDLQPTGMRVRADQRMQPCGGWDAAISALEEQVEGLADLAT

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Crispr_ID: NZ_CP024422_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024422_5

2532436-2532547

Orphan

Consensus_repeat	Method
CCCGCCATTTTTCTTCTCGCACGCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024422_5

>merge|NZ_CP024422|5|2532436-2532547|CRISPRCasFinder
CCCGCCATTTTTCTTCTCGCACGCCCGTATCCGACCCCGAAAACCCCTTACCGGCTCCGGTTACCCCCGCCTCTAACCCGTCCAGCCCGCCATTTTTCTTCTCGCACGCCCG

>NZ_CP024422|5|4|2532436-2532547|CRISPRCasFinder
CCCGCCATTTTTCTTCTCGCACGCCCG	TATCCGACCCCGAAAACCCCTTACCGGCTCCGGTTACCCCCGCCTCTAACCCGTCCAG
CCCGCCATTTTTCTTCTCGCACGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024422.1\|WP_099649350.1\|2533067_2533832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649342.1\|2526105_2527542_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377468
NZ_CP024422.1\|WP_099649353.1\|2534529_2536728_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649354.1\|2536727_2537303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649343.1\|2527568_2529575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370823
NZ_CP024422.1\|WP_157767366.1\|2539861_2540782_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649341.1\|2525572_2526106_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649345.1\|2530044_2530353_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649344.1\|2529645_2529969_+\|DUF2190-family-protein	unknown	unknown	gnl\|CDD\|370764
NZ_CP024422.1\|WP_157767364.1\|2534283_2534526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649351.1\|2533831_2534209_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649340.1\|2525339_2525576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649355.1\|2537302_2539054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649347.1\|2530790_2531876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649349.1\|2532615_2533038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649358.1\|2540862_2542485_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283041
NZ_CP024422.1\|WP_099649348.1\|2531872_2532274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_099649339.1\|2523948_2525004_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379044
NZ_CP024422.1\|WP_157767365.1\|2539046_2539847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024422.1\|WP_157767363.1\|2530359_2530791_+\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP024422.1|WP_099649348.1|2531872_2532274_+|hypothetical-protein
MNPLFMNAARAGAFATAMVMGQPITFTLKDGRVLTIHSVFRPRSERVTIDDSGAEIVTKAPALSIQRSALIASGVSDHGMEKEIVGASFEIGGRAYVVQDPEDDETMFLRAWPVLKPTAGYDGKYSRPPAGRV
>NZ_CP024422.1|WP_099649347.1|2530790_2531876_+|hypothetical-protein
MGIQIADGFRQYVDATEIRAKLVTDPSKSTLTIASTGGPFGKYAVQPSGGTSSSIYHHGAMKLKRPGGNVTDFTFSFDVKIGADGAATHNGLLCAGVSPLSYEGFNVTPATIPAAGFVAGISIEIDSLVPTVYHSIITAVNATSGVPTVNKAVLGVFPTLVAAQSYTVEMQAKILSSTSGEAIIRINGQQMVVAFNPTRVTPAAGLEQTGGFGLVMLGSKANVSPTYSFWISDVVIYDNDAVTPWPLGPIDITYLAADDPDLAVGPASDLTYETVSGEVIYQIADPAVGADIVGGVAYARVAAVGGSVATRAQLELVNGASVVTVANEVIQPGYTSAIKAVTVSKDMIAAGSVFRARSVTP
>NZ_CP024422.1|WP_157767363.1|2530359_2530791_+|hypothetical-protein
MLVGLSVLMNPGLPQGSADQPPPAPKETFALSAAAVASTFRSPRSSTGKLSAAALAVVARIVRGDPNGDPFAMSAAGVAAAMRSGRVTGQKLSAASLASAERFARSSQMKMSGTALASASRGQRIVSQKLSAASLAIVVKRAV
>NZ_CP024422.1|WP_099649345.1|2530044_2530353_+|hypothetical-protein
MQKILTAVSRTGEAVPAVGLDFMNGQHSALGGTVIIPRPGVYQIVSTQPAYISATGPAGAAPGSTYLAPGLPQHLIFGLNDTIRSAAVDADGELFVVPLKTE
>NZ_CP024422.1|WP_099649344.1|2529645_2529969_+|DUF2190-family-protein
MKIFVNSGSTATITATRDIVSGELVAEGALVGFAQADAAEGDLVAIVTEGVFQVDVLTATDVELGDVIYLDAGSLTTDATDTVRAGVAYSAGTSDGVTATVNVKINT
>NZ_CP024422.1|WP_099649343.1|2527568_2529575_+|hypothetical-protein
MSGKVRHKGTQTRSLEITPSSYDDDAGTIEIVYSAGARVDRGYYLEDLVVSEDAIETSRLDAGAVHLIRDHMPFGDPVGRIISHRVEDGKAIAVVKLSSGDANASTVSDIKSGVVRFVSVGYVPLETEVDESGDVTVITVRRWMPIEISLTPIPADIGAQTRALPTHPAQPKRKITMSKRMAKARTRMAALKALIVGRSTEELDAKIDELEAKIDEAKDANDADVAEIVAEVEDIAAEIEEIAVSEVEDGEDDADVEADVEGERTRAAEIFEIATRHRVDPVTVTRAISEGASTEEFRAMIKRSKVENSPGGVNARVTVDEREKRSAAAQNAVLALISGRRAQDAGDFAGMSLAEIARESMGRSAARLSNRDAVREIMKRTGMHASSDFSFTGAVGGAIDRRVREIYQNLDMPLAPVVRETTVGDFRPVDTYSIGGFPELKETPEGAEYEAGTVVAEGGSFSIKKYGRILRVSFEALINDDLRLLDVAIRGVASRAVALRNRAVHDAFSARMADGQPLFRTQRGNLIGSVALDVAGLSQARAALRKQKGLDGEQMGLVPKFLIVGPELETDAQRLISPITAAVTGEVNPFSANLALIVDPLIEDKSWIVSADPNVGDAIELAELRGYEGVQVEEAFDSSNDGFSWRARTFAGAHPTGFRGFVKSNGAA
>NZ_CP024422.1|WP_099649342.1|2526105_2527542_+|phage-portal-protein
MGVFSFLTRKTRKPARPGRHVGRSYRAPRADHLKDGFMPRDSWERVPSSLATLQARARDLAHNNPYASRAVSILTSYITGTGIRVAVTGDDAYSKAYRAWSESAAVDYDGRLNLAGLQSLCCRMMIEAGEAFLIIRHVENDDGRLMPQFQAVDPALVATSASPKNPAHQVVSGVEIDPATGRVAGYHFYKSFDPRNSRMETFFVAARDVIHLFETLYPGQIRGIPRGTQALIQASDMDQFVQTMLIKAKTEACLAVAVTVQDGEEYDDIGEVDEAESDPLPETLSPGLIFRLRQGEDLKTVIPSGTGGYIDYVRISLQSIAISYRVTYSQISGDLAQANFSSLKSDLNLFAQGVDETRELYVTPVVARIERLFRADYELSESRDVVITTTIVPPARSQIDPQKETGALISKLQAGLVSWSDAVLSSGKDPEEHLQQLVSERARLEKMGVTVSFIKQPDPVDDEDEAPANRDPDDSGVS
>NZ_CP024422.1|WP_099649341.1|2525572_2526106_+|hypothetical-protein
MTKVFRISGADPGLKGAIAFADVSGDGFANVVVYDMPVSTLIDGRPLPDEVQVSAILAAEKPDMAVIEHVGPRPKTGAASEWRFAMGFSALRSAFRLHFAARGNGPATFLIDPKAWKTPLGLTSDKALSLDLARKIFPSLATALARAKDDGRAEALLLLEFYRREVLPRGAAGVEVC
>NZ_CP024422.1|WP_099649340.1|2525339_2525576_+|hypothetical-protein
MPVIEPNTDVFSAAEKRGYLAALERAISTGVDYVSYNGDQSKFRSLNDMLRTRDLLKKELGIGKAKRSRVTRARMVRL
>NZ_CP024422.1|WP_099649339.1|2523948_2525004_+|hypothetical-protein
MSFENDNTELDAFCRIDPRPVLLPALGWTHAPKGTPGGKIDKERWEKGGASASPFRGRDGKWRFRQGPDARATIVDLAKEQAGGLGRARQLLRQITGSSQETTSTPAPPADFSSRQPAPPPAVQDYRTPKEVMEAIDAEAGPFTDATKIPPYLVARGFRHIHPVFRERMKISLDQHRNVVFPYFVPAEGSDGAVIVSRERIGQGYKGYLENTRAGVWIAAPKNEIRLVVICEAPLDCISSAGIRKDDMDHTAFFALRSGAEEACAELVARIIAKRGAGARVELRTDNDPAGLLYAAKVGSLLKKRDIRAIYVAPPEDCVDWTEHQEAVFMAQELPTQELADELSDMIADLG
>NZ_CP024422.1|WP_099649349.1|2532615_2533038_+|hypothetical-protein
MHPRQQLRSEIVALLRAALPDEIPVLDSQVSDVEKNPVSVLIYSAGESIERVAGAGSRGNTPIRRRMQTAVVVVSAFPGDGPDAFEQADDVSRTIEIAMNAPFDPGLDLIATDTSQAAGEETIVQVSMLYETVMTDTMEN
>NZ_CP024422.1|WP_099649350.1|2533067_2533832_+|hypothetical-protein
MASTILRALPNSFYTDGKGVAHYYVFENPDDPTSFGPGVRLGDMDDMTLSVELTEGDTRYSNEYDLKTAAVTPVSEIDCKLSMTLAQLTETAVASALMGKRSAFTQAAQAGLTKTLAAGEIAFLGGYDVQITDAVLTAGGGDATPGVDYLIDAASGQIEAVVGLTVTYSIPAVSDKIKIGIASGVMPRGMLIFRGVAAQGKRKIVRLHDVQLKPAGGLSLISDGLLTVQLEASCYPIAGQEDGYAIGIVTEVDA
>NZ_CP024422.1|WP_099649351.1|2533831_2534209_+|hypothetical-protein
MTDIVTLQDLLGGDEYVEISRGRIAVRGLGVGEVLDFVTRYPVLQVGEGLKISAPALIAAAPAAVPEIIALACGMPGKSGQDAARRLSAPDQALVIEAIIERTMPDGPGPFVEILARLLRKLSGS
>NZ_CP024422.1|WP_157767364.1|2534283_2534526_+|hypothetical-protein
MTVRQLVAVSILESEVERETIKSNAVASRIAQADKKGWSKSMKELEPKASAPQRPQVVDQSAGQDVSDPENFFHQIPDEV
>NZ_CP024422.1|WP_099649353.1|2534529_2536728_+|hypothetical-protein
MAGEREIKIRLSAEGEQAIVAALRSVERAGEKTGDALDKSGKNGSRGFLSMRGAAVGLNSVLGTTSSLATSVFTGISAGGMLIGGAFSAAQGAVSGLKSALSELRQISTEAASDIRNLQGIAAAMEMSGPDGAALADSWTQAIASKSFEAEAKDVSEMLTDIGEKVREAAAGSEDAQLVFSRLGISMDELIDKRTGKPVSNIEALLTMIERAKKASAGDWSQSLIDIVGTGGVTQFSALRDVPVRELRELQDEMRRLAGITPEVVAAADAVAASQGRLGVAFQGTARALLAGMGDSIADGNDDLTDFLVANRDKVTEFGRTVGDFSQQLYGRLMEFASAASRDLSGVGGDLASGPLKTGLDAILTAVDWLLDRLEELTAYLGQGQSVEWIDNTVSALKKAAEGARAFAGDIQAFAAFIMDDVAPAVSGFADMISGLFDALGVDDRGAQLGITLALVAFSGTLLSVVTNVGLLIGKVTGLTGALAAAGSAAAPLVAIGGAAVGAAYLGNEESRAARSVLDIFDSLPVVAKERGEEAAAAMALAMQAEIDKKTGGSWLDKALGVIPGYENAGERELEFQAKINGLSRDEIIDKAAEGVRAAGVQISDDIEVDFGAGVIVTGAEINARVTEQLSEFPAQIDVASLGELTAPITLDPQILDQDIDAMVRRVTDRVSASLPAGPGSVATAAEAASATRGPAQTVNLQINGQAAGTFSGSSDQLEMLQRAAARMNRGG
>NZ_CP024422.1|WP_099649354.1|2536727_2537303_+|hypothetical-protein
MSNQVFTKMRISGIPLPLRADDDISVTLRQVDQAGELARTVNGELIRLSRSAFDRYAVSISGRGINAPALSNLVAGQYVEISLPDPVYAYLNTTLSRAIFPRAVVNVEFFRIDGSKIIPTQPTNYESTMTEVFSASRVSAMRASVSSSYLAYTGVHAARGRLVLACRVVNWSIDADDRTKDVAWNLELEEV
>NZ_CP024422.1|WP_099649355.1|2537302_2539054_+|hypothetical-protein
MQAGTTISAIFSSNGATSVASGGTELTAMQIAISRRRDTYDMIDVTIVWPGATFWSSGFRYIAIRSSHDGVIAVGEIVGIPIAMAGAVVTVQAACRAADHSTKIATALTPARARLGKHLAPDDDEALLDICLQSLYVAPIGGGVLAFPFGGLSSRAVVQLYGEGSAVGASNILGLRVIMTNDPATAFRLDARARHVQSYTAQVAASVPNFQYYGVLERAVDGGDADHVPLGLNTGTDTSAGSATVTIRPPFTDPTTCAYVPAATSTAQKRSVTGADFRAAVTSRVQRDETAQISVNTNIGTVPGARSDASDEFAVADMTGVNYFDQTFIQRKPGGGSRTIKMRCGNSSAWLAAGSSNISSLTSDAVNGLIEIATRRALDHIYCVEMQVDVPAAVAIALDTRDRCRVNDVRLPGGAATGWVTGVNIVLSQSDSATITLLCPIVSAAPVTSGDRFTLGIGLTGGVIEVRGTLGAPAGYQPTKPGIFSALEAGDGDFFVQSVTVSDVASDNEAMFSQINSANAAEVSMSSASALNSAFVLTGNLEDYVKPPRINVSWKERQISEDAIDKVQIGSINVVIAGGITFV
>NZ_CP024422.1|WP_157767365.1|2539046_2539847_+|hypothetical-protein
MSEETDQLIDFLYKNKEAAKERAAAEGAVTAIQKDWSAKSRAWQDKRTGRAPVGLGWTAPPDSSTATGSAARLKTSMPRSISVSPGVTAPEILLGGVGLHARYPSTWDVSIYPTATLGSSFTGITLPEPTSVGDLARRDIAERLGVEESELQMSATCLASGGNRLKTMMDYQGAYAIELVAEVMTQAALDVLLGAPIFASVDVSWAGPIQHNIPITVTATYSSGPAETMTLTLGSDPRILTEGDVATLHLIAIFDDVWRLIATRTL
>NZ_CP024422.1|WP_157767366.1|2539861_2540782_+|hypothetical-protein
MKRLARPRAGQVKDTATSVARTPADIPGVADGTPGLGEKMSFDYNPIAAHGEMSFMLQTAMTASMRGGLMTSRSVVAGAKAGDVDVDSVTTSIMRKLKSQVSITALTNYTRASLSITRIGIGDTYGGRMMPGALFSSPVRELLGTQGEGEVVYDGYQPTVKRMVSAISARETAIIELPDEARGALVNLETSWGNAPGFIGGSKGYTISGVTVSVQNEIKALFDHGLTDQLYPQIVAAMQRPGRTLQSVQVRFGSAPLPERIAARSIQKSVVKSGLTGAADFMRLSAAGEVSAGDRRTLPASSVRKQ
>NZ_CP024422.1|WP_099649358.1|2540862_2542485_-|hypothetical-protein
MADENWMEDMLEVDAPRAVNVIDFRRPADDLIEDDAFEDHSHLFTKLAIGGSDGKQVLGNAYNVGLILEADYRVRDLVAYDEFRERPVILRDIDTGVSCVPTVRVKAGGEPLASHHLDALMAFMQAPSDRRGHSGGHGCGVTKAALETGVSNAARRNAFDPVKDMIESAVWDGVSRIGGWLSRYLGCPRDIYHEEVGTKWLVGAVARVYEPGAKFDYILTIGGAQGARKSTMLEILGGEFFTALAAGAMKDEKRLIEATQGSWIVEIAEMAAMQGASQSSVKNIVSTTVDRARLAYDKLASDHRRRFVFAATTNETAILDDPTGGRRYWIVDCKVPLIDTEALETEVPQMWAEALHVYRTMRAEKPAGHLPLFLSPQASAIAEAKQAAARAHDDIDAIADEIRRVMETPRLDGEENAFGASYYAEYAPKEIFAEVTGKPAAEYTSGKVARDFLKACRRVEYLATPGERKYIKRLKEKAKPVVVIREKFLPHFAARLSEIENVDISKYDANGEEVRAGAGEREEKMSGRGGSDIVDGILEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP024422.1	3334367-3334398	0	1.0

1. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to position: 3334367-3334398, mismatch: 0, identity: 1.0

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cctctcgacctcggcccgcaggtcggcctctg	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MK291445	Paracoccus phage vB_PyeM_Pyei1, complete genome	4718-4749	0	1.0
NZ_CP024422_4	4.7\|2493984\|36\|NZ_CP024422\|CRISPRCasFinder	2493984-2494019	36	MK291445	Paracoccus phage vB_PyeM_Pyei1, complete genome	4714-4749	2	0.944
NZ_CP024422_3	3.2\|1712856\|26\|NZ_CP024422\|CRT	1712856-1712881	26	MG252615	Escherichia phage vB_EcoS_HSE2, complete genome	12570-12595	5	0.808
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MN234216	Streptomyces phage Gilgamesh, complete genome	118046-118077	6	0.812
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP044073	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence	138069-138100	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	775948-775979	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1984731-1984762	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1794117-1794148	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1865541-1865572	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1890374-1890405	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	781473-781504	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	2066391-2066422	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1923321-1923352	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1038278-1038309	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1957150-1957181	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1794253-1794284	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	29665-29696	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	1573052-1573083	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	226481-226512	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	138377-138408	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	562949-562980	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1854965-1854996	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	465008-465039	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	828288-828319	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	439571-439602	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1931629-1931660	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	541183-541214	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1641263-1641294	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1872932-1872963	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1870074-1870105	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1868958-1868989	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1936156-1936187	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1793785-1793816	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1239555-1239586	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1805867-1805898	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1869145-1869176	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1943097-1943128	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1936123-1936154	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1843912-1843943	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1922624-1922655	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1934866-1934897	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1793729-1793760	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1957150-1957181	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1834504-1834535	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1844224-1844255	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1922624-1922655	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	226203-226234	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1934965-1934996	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1843912-1843943	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1835153-1835184	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1843115-1843146	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1922624-1922655	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1922624-1922655	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1922624-1922655	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1934961-1934992	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1994958-1994989	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1934950-1934981	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1834529-1834560	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1849206-1849237	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1829841-1829872	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1892432-1892463	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1920858-1920889	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1919939-1919970	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1934950-1934981	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1834529-1834560	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1844223-1844254	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	784042-784073	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1885452-1885483	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1935946-1935977	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1834529-1834560	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1834529-1834560	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1934961-1934992	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1922629-1922660	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1999541-1999572	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1934972-1935003	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1934773-1934804	6	0.812
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1999541-1999572	6	0.812
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NC_010507	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08, complete sequence	7644-7675	7	0.781
NZ_CP024422_4	4.1\|2493927\|32\|NZ_CP024422\|PILER-CR,CRT	2493927-2493958	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	679834-679865	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	60430-60461	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	137908-137939	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1302185-1302216	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	30569-30600	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	511349-511380	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	129355-129386	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	190102-190133	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2259865-2259896	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	522430-522461	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	246701-246732	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	26881-26912	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	688361-688392	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KF493881	Mycobacterium phage JAMaL, complete genome	10618-10649	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	285807-285838	8	0.75
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP034813	Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence	41282-41313	8	0.75
NZ_CP024422_4	4.3\|2494049\|31\|NZ_CP024422\|PILER-CR,CRT	2494049-2494079	31	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1514690-1514720	8	0.742
NZ_CP024422_4	4.3\|2494049\|31\|NZ_CP024422\|PILER-CR,CRT	2494049-2494079	31	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	300245-300275	8	0.742
NZ_CP024422_4	4.3\|2494049\|31\|NZ_CP024422\|PILER-CR,CRT	2494049-2494079	31	MK864266	Gordonia phage Arri, complete genome	6838-6868	8	0.742
NZ_CP024422_2	2.2\|951462\|33\|NZ_CP024422\|CRT	951462-951494	33	MK524505	Gordonia phage Dogfish, complete genome	14324-14356	9	0.727
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP022368	Azospirillum sp. TSH58 plasmid TSH58_p07, complete sequence	27431-27462	9	0.719
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KR072689	Paracoccus phage Shpa, complete genome	22422-22453	9	0.719
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KT221034	Streptomyces phage SF3, complete genome	43527-43558	9	0.719
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NC_011044	Mycobacterium phage Nigel, complete genome	9896-9927	9	0.719
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_LR134444	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 2, complete sequence	3523-3554	9	0.719
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	121999-122030	9	0.719
NZ_CP024422_4	4.4\|2494109\|32\|NZ_CP024422\|PILER-CR,CRT	2494109-2494140	32	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	226471-226502	9	0.719
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	MK388689	Pantoea phage vB_PagM_LIET2, complete genome	49157-49188	9	0.719
NZ_CP024422_4	4.5\|2494170\|32\|NZ_CP024422\|PILER-CR,CRT	2494170-2494201	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	575703-575734	9	0.719
NZ_CP024422_2	2.6\|951462\|34\|NZ_CP024422\|CRISPRCasFinder,PILER-CR	951462-951495	34	MK524505	Gordonia phage Dogfish, complete genome	14323-14356	10	0.706
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MH020248	Mycobacterium phage Panamaxus, complete genome	26880-26911	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MN062712	Mycobacterium phage Pocahontas, complete genome	26877-26908	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KX640831	Mycobacterium phage Margo, complete genome	26906-26937	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MG812492	Mycobacterium phage Lambert1, complete genome	26880-26911	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MK284519	Mycobacterium phage Norbert, complete genome	26880-26911	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MK524496	Mycobacterium phage Veracruz, complete genome	26880-26911	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MH976517	Mycobacterium phage Popcicle, complete genome	26877-26908	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KT326767	Mycobacterium phage Texage, complete genome	26881-26912	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KM592966	Mycobacterium phage QuinnKiro, complete genome	26880-26911	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MH316563	Mycobacterium phage Hookmount, complete genome	26881-26912	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	KX670828	Mycobacterium phage Todacoro, complete genome	26880-26911	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	MK494127	Mycobacterium phage Noella, complete genome	26881-26912	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NC_014159	Tsukamurella paurometabola DSM 20162 plasmid pTpau01, complete sequence	78840-78871	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	457254-457285	10	0.688
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP027239	Dietzia sp. oral taxon 368 strain W5195 plasmid unnamed1, complete sequence	103673-103704	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	36827-36858	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP020568	Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence	156263-156294	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	882018-882049	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	345751-345782	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	36867-36898	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	36872-36903	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	36857-36888	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	40038-40069	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	40038-40069	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	40038-40069	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	40038-40069	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	40038-40069	11	0.656
NZ_CP024422_4	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	40038-40069	11	0.656
NZ_CP024422_4	4.7\|2493984\|36\|NZ_CP024422\|CRISPRCasFinder	2493984-2494019	36	NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	60426-60461	11	0.694

1. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MK291445 (Paracoccus phage vB_PyeM_Pyei1, complete genome) position: , mismatch: 0, identity: 1.0

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cctctcgacctcggcccgcaggtcggcctctg	Protospacer
********************************

2. spacer 4.7|2493984|36|NZ_CP024422|CRISPRCasFinder matches to MK291445 (Paracoccus phage vB_PyeM_Pyei1, complete genome) position: , mismatch: 2, identity: 0.944

cccgcctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
tcagcctctcgacctcggcccgcaggtcggcctctg	Protospacer
.* *********************************

3. spacer 3.2|1712856|26|NZ_CP024422|CRT matches to MG252615 (Escherichia phage vB_EcoS_HSE2, complete genome) position: , mismatch: 5, identity: 0.808

ccccgcggtattctgtcggcggcttc	CRISPR spacer
ccgcgcggtattctttcggcggcggg	Protospacer
** *********** ********

4. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 6, identity: 0.812

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctcctcgacgtcggcccgcaggtcgacccccg	Protospacer
*..****** ***************.**.*.*

5. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP044073 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cttcgtgatctcggcccgcaggtaggcctcag	Protospacer
*.** .**.************** ****** *

6. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

7. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

8. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

9. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

10. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

11. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

12. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

13. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

14. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

15. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

16. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

17. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

18. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

19. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

20. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

21. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

22. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

23. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

24. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

25. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

26. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

27. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

28. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

29. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

30. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

31. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

32. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

33. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

34. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

35. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

36. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

37. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

38. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

39. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

40. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

41. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

42. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

43. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

44. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

45. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

46. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

47. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

48. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

49. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

50. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

51. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

52. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

53. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

54. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

55. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

56. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

57. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

58. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

59. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

60. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

61. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

62. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

63. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

64. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

65. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

66. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

67. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

68. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

69. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

70. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

71. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

72. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

73. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

74. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

75. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

76. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

77. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaaccgccgtcgccctgcgggagcccac--	CRISPR spacer
gccgaaacggccgtcgccctgc--gagccgatcg	Protospacer
** ***** *************  ***** *.

78. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NC_010507 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08, complete sequence) position: , mismatch: 7, identity: 0.781

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gcgcacgacctcggcgcgcatgtcggcctcga	Protospacer
 * * ********** **** ********* .

79. spacer 4.1|2493927|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgggcggctctctgacgcagacgctgcaaca	CRISPR spacer
ctgggcggctggctgacgcagacgctgtcatg	Protospacer
..********  ***************. *..

80. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ccgctcggcctcggcccgcaggtcggggatgc	Protospacer
** ****.******************   .

81. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtcgccgagctcggcccgcaggtcggccaccg	Protospacer
 .. .*** ******************* *.*

82. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctgcacgacctcggcccgcaggccggcccgac	Protospacer
*. * *****************.*****.

83. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctgctcgacctcggtcagcaggtcggccatgc	Protospacer
*. ***********.* *********** .

84. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctgcacgacctcggcccgcaggccggcccgac	Protospacer
*. * *****************.*****.

85. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctgctcgacctcggtcagcaggtcggccatgc	Protospacer
*. ***********.* *********** .

86. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctgctcgacctcggtcagcaggtcggccatgc	Protospacer
*. ***********.* *********** .

87. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
accgtcgaactcggcgcgcaggtcggcctgat	Protospacer
 *. **** ****** *************

88. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctcgccgacctcggcaagcaggtcggcctgtc	Protospacer
*.. .**********  ************ *

89. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctcgccgacctcggcaagcaggtcggcctgtc	Protospacer
*.. .**********  ************ *

90. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctcgccgacctcggcaagcaggtcggcctgtc	Protospacer
*.. .**********  ************ *

91. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ctcgccgacctcggcaagcaggtcggcctgtc	Protospacer
*.. .**********  ************ *

92. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KF493881 (Mycobacterium phage JAMaL, complete genome) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cgcgtcgacctcggccagcagctcggccacct	Protospacer
* . ************ **** ****** *.

93. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ccgcgtcacctcggcccgcagttccgcctcaa	Protospacer
** * . ************** ** ***** .

94. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cagcacgccctcgggccgcaggtcggccgcat	Protospacer
*  * ** ****** ************* *

95. spacer 4.3|2494049|31|NZ_CP024422|PILER-CR,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

-----tgggtgccgcatgtggagcagcgcggtgaca	CRISPR spacer
gaccacgg-----gcttgtggagcagcgcggtgcca	Protospacer
     .**     ** ***************** **

96. spacer 4.3|2494049|31|NZ_CP024422|PILER-CR,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 8, identity: 0.742

-----tgggtgccgcatgtggagcagcgcggtgaca	CRISPR spacer
gaccacgg-----gcttgtggagcagcgcggtgcca	Protospacer
     .**     ** ***************** **

97. spacer 4.3|2494049|31|NZ_CP024422|PILER-CR,CRT matches to MK864266 (Gordonia phage Arri, complete genome) position: , mismatch: 8, identity: 0.742

tgggtgccgcatgtggagcagcgcggtgaca	CRISPR spacer
gtcgggccgcatgtcgagcggcgcggtgtcg	Protospacer
   * ********* ****.******** *.

98. spacer 2.2|951462|33|NZ_CP024422|CRT matches to MK524505 (Gordonia phage Dogfish, complete genome) position: , mismatch: 9, identity: 0.727

aaaccgcgcaccttgatcgcgtcagacagcgcg	CRISPR spacer
tcgctgagcacctgcatcgcgtcagacagcgtc	Protospacer
  .*.* ******  ****************.

99. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022368 (Azospirillum sp. TSH58 plasmid TSH58_p07, complete sequence) position: , mismatch: 9, identity: 0.719

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgagcgatctcggcccgccggtcggcctcct	Protospacer
 .   ***.********** **********.

100. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KR072689 (Paracoccus phage Shpa, complete genome) position: , mismatch: 9, identity: 0.719

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtcctcgaactcggcgcgcaggtcggcccagc	Protospacer
 ..***** ****** ************.

101. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 9, identity: 0.719

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggtgtcgaccagggcccgcaggtcggcccagt	Protospacer
  * ******  ****************.

102. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 9, identity: 0.719

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
tgcgtcgacctcggccagcagctcggccacct	Protospacer
. . ************ **** ****** *.

103. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_LR134444 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cttctcgaactcggccagcaggtcgtcgaact	Protospacer
*.****** ******* ******** *   .

104. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 9, identity: 0.719

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gcgcgcgatctcggcccgccggtcggccagca	Protospacer
 * * ***.********** ********  ..

105. spacer 4.4|2494109|32|NZ_CP024422|PILER-CR,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 9, identity: 0.719

gtatgggatggagcaaactgggtgacagcgga-	CRISPR spacer
agatgggatggagaaaaatgggtga-gtcaaac	Protospacer
. *********** *** ******* . *..*

106. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to MK388689 (Pantoea phage vB_PagM_LIET2, complete genome) position: , mismatch: 9, identity: 0.719

gcagaaaccgccgtcgccctgcgggagcccac	CRISPR spacer
gcaggaaccgccgtcaccctgcggccagtgaa	Protospacer
****.**********.********  . . *

107. spacer 4.5|2494170|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaaaccgccgtcgccctgcgggagcccac	CRISPR spacer
ggcgcgcccgccgtggccctgccggagccccg	Protospacer
*  * . ******* ******* *******

108. spacer 2.6|951462|34|NZ_CP024422|CRISPRCasFinder,PILER-CR matches to MK524505 (Gordonia phage Dogfish, complete genome) position: , mismatch: 10, identity: 0.706

aaaccgcgcaccttgatcgcgtcagacagcgcgt	CRISPR spacer
tcgctgagcacctgcatcgcgtcagacagcgtcc	Protospacer
  .*.* ******  ****************. .

109. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MH020248 (Mycobacterium phage Panamaxus, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

110. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MN062712 (Mycobacterium phage Pocahontas, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

111. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KX640831 (Mycobacterium phage Margo, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

112. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MG812492 (Mycobacterium phage Lambert1, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

113. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MK284519 (Mycobacterium phage Norbert, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

114. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MK524496 (Mycobacterium phage Veracruz, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

115. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MH976517 (Mycobacterium phage Popcicle, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

116. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KT326767 (Mycobacterium phage Texage, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

117. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KM592966 (Mycobacterium phage QuinnKiro, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

118. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MH316563 (Mycobacterium phage Hookmount, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

119. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to KX670828 (Mycobacterium phage Todacoro, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

120. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to MK494127 (Mycobacterium phage Noella, complete genome) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggaatcgacctcggcacgccggtcggccggct	Protospacer
    *********** *** ********  .

121. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NC_014159 (Tsukamurella paurometabola DSM 20162 plasmid pTpau01, complete sequence) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
ggcgagtacctcggcgcgccggtcggcctcgg	Protospacer
  .    ******** *** ********** *

122. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 10, identity: 0.688

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
tgcctcggcctcggcccgctggtcggggctgg	Protospacer
. .****.*********** ******  .. *

123. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP027239 (Dietzia sp. oral taxon 368 strain W5195 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gaatacgacctcggcctgcgggtcggcccgga	Protospacer
   . ***********.**.********.  .

124. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

125. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP020568 (Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gaactcgacctcggcgcgcagctcggggcgga	Protospacer
   ************ ***** ****  .  .

126. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

127. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

128. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

129. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

130. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

131. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

132. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

133. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

134. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

135. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

136. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 11, identity: 0.656

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
gtgttcgagcgcggcccgcaggtcggcgggct	Protospacer
 . .**** * ****************   .

137. spacer 4.7|2493984|36|NZ_CP024422|CRISPRCasFinder matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 11, identity: 0.694

cccgcctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cgatccgctcggcctcggcccgcaggtcggggatgc	Protospacer
*   ** ****.******************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50946 : 62318

Rhodobacter_phage(25.0%)

protease,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099647882.1\|50946_51660_-	DUF2793 domain-containing protein	A0A0K1Y6G9	Rhodobacter_phage	1.2e-16	40.0
WP_099647883.1\|51652_55546_-	host specificity protein	A0A0K1Y6G6	Rhodobacter_phage	1.7e-223	38.9
WP_028717899.1\|55561_55990_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.5e-32	53.3
WP_099647884.1\|55986_56808_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	4.7e-46	38.2
WP_099647885.1\|56804_57437_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	9.5e-55	48.3
WP_036761749.1\|57443_58112_-\|tail	phage tail tape measure protein	C0LP53	Escherichia_virus	2.8e-09	37.3
WP_099647886.1\|58134_58356_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_080620712.1\|58352_58670_-	gene transfer agent family protein	NA	NA	NA	NA
WP_028717905.1\|58671_59085_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_028717906.1\|59096_59516_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_099647887.1\|59512_59863_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_099649974.1\|59859_60477_-	hypothetical protein	NA	NA	NA	NA
WP_099649975.1\|60613_61780_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	1.1e-59	36.0
WP_099647888.1\|61802_62318_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.6e-31	49.7

DBSCAN-SWA_2

1087799 : 1170858

Enterobacteria_phage(11.11%)

terminase,head,integrase,tRNA,protease,tail,portal,transposase,capsid

attL 1125767:1125784|attR 1179142:1179159

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099648093.1\|1087799_1088189_-\|transposase	transposase	NA	NA	NA	NA
WP_028719625.1\|1088516_1089119_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA
WP_099648438.1\|1089250_1090090_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_028719623.1\|1090254_1090887_-\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
WP_080621306.1\|1090962_1092090_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	3.9e-35	28.5
WP_028719621.1\|1092205_1092790_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_028719620.1\|1092879_1093233_-	YbaN family protein	NA	NA	NA	NA
WP_099648439.1\|1093233_1094427_-	coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_080621303.1\|1094423_1094798_-	RidA family protein	NA	NA	NA	NA
WP_099648440.1\|1094790_1095396_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	Q66YC8	Euphorbia_ringspot_virus	4.0e-10	30.2
WP_028719616.1\|1095392_1096106_-	ribonuclease PH	NA	NA	NA	NA
WP_028719615.1\|1096179_1097235_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_028719614.1\|1097238_1097784_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_099648441.1\|1097826_1098699_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	2.1e-12	30.4
WP_099648442.1\|1098713_1099490_-	ParA family protein	Q8JL10	Natrialba_phage	1.0e-18	33.7
WP_099648443.1\|1099482_1100067_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_099650034.1\|1100063_1101923_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_099648444.1\|1101932_1103189_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_028719609.1\|1103205_1104477_-	transcription termination factor Rho	NA	NA	NA	NA
WP_099648445.1\|1104597_1105044_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_099648446.1\|1105450_1106428_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_028719606.1\|1106619_1107858_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_099648447.1\|1107857_1108934_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_157767309.1\|1109075_1112159_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_028719602.1\|1112155_1113145_+	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_099648450.1\|1113144_1113834_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_099648451.1\|1113876_1114782_+	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_099648452.1\|1114781_1116113_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_099648453.1\|1116109_1118023_+	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	4.3e-18	29.5
WP_080621268.1\|1118492_1118843_-	hypothetical protein	NA	NA	NA	NA
WP_080621267.1\|1118839_1119082_-	hypothetical protein	NA	NA	NA	NA
WP_146113034.1\|1119950_1120178_-	hypothetical protein	NA	NA	NA	NA
WP_099648454.1\|1120940_1121426_-	hypothetical protein	NA	NA	NA	NA
WP_099648455.1\|1121422_1121776_-	hypothetical protein	NA	NA	NA	NA
WP_099648456.1\|1121775_1124196_-	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	3.1e-53	50.4
WP_099648457.1\|1124205_1125870_-\|terminase	terminase	A0A1B0RXD3	Streptococcus_phage	1.1e-62	31.6
1125767:1125784	attL	NA	NA	NA	NA
WP_099648458.1\|1125866_1126253_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_099648459.1\|1126249_1126567_-\|head	phage head closure protein	NA	NA	NA	NA
WP_099648460.1\|1126563_1126971_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_099648461.1\|1126967_1127396_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_099648462.1\|1127395_1127707_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_099648463.1\|1127707_1128142_-	hypothetical protein	NA	NA	NA	NA
WP_099648464.1\|1128145_1128625_-	hypothetical protein	NA	NA	NA	NA
WP_099648465.1\|1128621_1128978_-	HNH endonuclease	NA	NA	NA	NA
WP_099648466.1\|1128977_1129358_-	hypothetical protein	NA	NA	NA	NA
WP_099648467.1\|1129370_1130891_-\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	1.4e-35	31.7
WP_099648468.1\|1130890_1131277_-	hypothetical protein	NA	NA	NA	NA
WP_099648469.1\|1131263_1132496_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	9.8e-40	32.2
WP_099648470.1\|1132562_1132811_-	DNA-binding protein	NA	NA	NA	NA
WP_099648471.1\|1132900_1133119_-	hypothetical protein	NA	NA	NA	NA
WP_099650035.1\|1133277_1134372_-	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	4.2e-34	34.4
WP_099648472.1\|1134410_1134770_-	hypothetical protein	NA	NA	NA	NA
WP_099648474.1\|1134992_1135271_-	hypothetical protein	NA	NA	NA	NA
WP_099648475.1\|1135279_1135462_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	3.0e-06	44.2
WP_099648476.1\|1135793_1136975_-\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	1.1e-75	40.5
WP_099648477.1\|1137170_1138223_+	aldo/keto reductase	NA	NA	NA	NA
WP_099648478.1\|1138290_1139238_+	nitronate monooxygenase	NA	NA	NA	NA
WP_028719595.1\|1139342_1140146_-	response regulator	NA	NA	NA	NA
WP_028719594.1\|1140240_1140408_+	hypothetical protein	NA	NA	NA	NA
WP_099648479.1\|1140404_1140995_+	RNA polymerase sigma factor	A0A076YQ50	Rhizobium_phage	4.3e-09	28.9
WP_099648480.1\|1141007_1142798_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_051578135.1\|1142831_1143695_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_099648481.1\|1143785_1144499_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-53	48.5
WP_099648482.1\|1144491_1145088_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_028719588.1\|1145099_1145948_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_028719587.1\|1146036_1146486_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_080621257.1\|1146636_1147854_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_099648483.1\|1147847_1148687_+	glycosyl transferase	NA	NA	NA	NA
WP_099648484.1\|1148683_1149502_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_099648485.1\|1149492_1149954_+	GAF domain-containing protein	NA	NA	NA	NA
WP_028719582.1\|1149931_1150330_+	GFA family protein	NA	NA	NA	NA
WP_099648486.1\|1150375_1151005_+	LysE family translocator	NA	NA	NA	NA
WP_099648487.1\|1151001_1151649_+	RNA pseudouridine synthase	NA	NA	NA	NA
WP_099648488.1\|1151709_1152648_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_080621252.1\|1152644_1153076_+	GFA family protein	NA	NA	NA	NA
WP_099648489.1\|1153062_1153959_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_099648490.1\|1153959_1154715_-	hypothetical protein	NA	NA	NA	NA
WP_028719575.1\|1154704_1155124_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_028719574.1\|1155193_1156000_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_099648491.1\|1156024_1157440_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_099648492.1\|1157436_1158105_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_099648493.1\|1158097_1161040_+	double-strand break repair protein AddB	NA	NA	NA	NA
WP_099648494.1\|1161029_1164410_+	double-strand break repair helicase AddA	E3T5J8	Cafeteria_roenbergensis_virus	3.0e-06	27.3
WP_028719569.1\|1164460_1164784_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	9.5e-19	46.0
WP_099648495.1\|1164819_1165710_-	hypothetical protein	NA	NA	NA	NA
WP_028719567.1\|1165793_1166348_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_099648496.1\|1166435_1167740_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	2.2e-42	29.0
WP_028719565.1\|1167793_1167979_+	hypothetical protein	NA	NA	NA	NA
WP_099648497.1\|1167994_1168588_-	DNA mismatch repair protein MutS	NA	NA	NA	NA
WP_080621243.1\|1168591_1169248_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_099648498.1\|1169355_1169904_+	FxsA family protein	NA	NA	NA	NA
WP_099648499.1\|1169925_1170858_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	7.7e-45	35.6
1179142:1179159	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1708678 : 1770320

Wolbachia_phage(22.22%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028718076.1\|1708678_1708966_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_099648817.1\|1708962_1710447_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_099650063.1\|1710469_1711018_+	hypothetical protein	NA	NA	NA	NA
WP_099648818.1\|1711028_1711697_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_099648819.1\|1711642_1712419_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_080621828.1\|1713035_1713260_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_028718071.1\|1713577_1714681_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_080621829.1\|1715331_1715838_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_099648820.1\|1715838_1716810_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_036761814.1\|1716809_1717193_+	cell division protein FtsL	NA	NA	NA	NA
WP_080621832.1\|1717189_1718995_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_099648821.1\|1719024_1720494_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_099648822.1\|1720490_1721876_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_080621835.1\|1721875_1722958_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_099648823.1\|1723036_1724437_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_099648824.1\|1724573_1726976_-	glycogen/starch/alpha-glucan phosphorylase	A0A140XAG6	Dickeya_phage	1.1e-07	40.0
WP_099648825.1\|1727167_1729246_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_099648826.1\|1729242_1730673_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_099648827.1\|1730761_1732021_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_099648828.1\|1732046_1734218_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_099648829.1\|1734358_1735960_+	alpha-glucosidase	NA	NA	NA	NA
WP_099648830.1\|1736204_1737368_-	hypothetical protein	NA	NA	NA	NA
WP_099648831.1\|1737740_1738298_-	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_099648832.1\|1738364_1739690_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_080621845.1\|1739768_1740176_+	metallopeptidase family protein	NA	NA	NA	NA
WP_099648833.1\|1740183_1742064_-	sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein	NA	NA	NA	NA
WP_099648834.1\|1742186_1743878_+	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	3.1e-20	25.6
WP_028718052.1\|1743874_1744699_+	TIM barrel protein	NA	NA	NA	NA
WP_099648835.1\|1745094_1745496_+	hypothetical protein	NA	NA	NA	NA
WP_099648836.1\|1745541_1746522_+	DUF1775 domain-containing protein	NA	NA	NA	NA
WP_028718050.1\|1746508_1747126_+	SCO family protein	NA	NA	NA	NA
WP_099648837.1\|1747390_1748254_+	hypothetical protein	NA	NA	NA	NA
WP_099648838.1\|1748237_1749596_+	hypothetical protein	NA	NA	NA	NA
WP_099648839.1\|1749690_1749948_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_099648840.1\|1749937_1750231_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_099648841.1\|1750320_1750584_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_099648842.1\|1750769_1750955_+	hypothetical protein	NA	NA	NA	NA
WP_099648843.1\|1752676_1752880_-	hypothetical protein	NA	NA	NA	NA
WP_099648844.1\|1752879_1753386_-	hypothetical protein	NA	NA	NA	NA
WP_099648845.1\|1753382_1753565_-	hypothetical protein	NA	NA	NA	NA
WP_099648846.1\|1753561_1753885_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_099648847.1\|1753994_1754240_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099648848.1\|1754669_1755884_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.2e-43	46.6
WP_099648849.1\|1756280_1757219_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	4.0e-33	36.2
WP_099647977.1\|1757929_1759156_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099648850.1\|1759225_1759795_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_099648851.1\|1759910_1761320_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	6.3e-59	32.4
WP_090757591.1\|1761475_1761967_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_099648852.1\|1762052_1762334_-\|transposase	transposase	Q8W6R2	Burkholderia_virus	2.2e-16	56.4
WP_099648853.1\|1762501_1763455_-	YfdX family protein	NA	NA	NA	NA
WP_028720460.1\|1763527_1764019_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_028720459.1\|1764039_1764438_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_080623366.1\|1764452_1764881_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_024845974.1\|1765083_1765515_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_099648854.1\|1765529_1767362_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	M4QMW8	Micromonas_pusilla_virus	3.4e-105	43.4
WP_099648855.1\|1767425_1770320_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	2.0e-123	40.1

DBSCAN-SWA_4

2061812 : 2068610

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099649021.1\|2061812_2062970_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.8e-44	32.6
WP_099649022.1\|2063090_2063786_-	transcriptional repressor LexA	E5DV74	Deep-sea_thermophilic_phage	5.2e-14	37.8
WP_099649023.1\|2063889_2065071_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_028718237.1\|2065080_2065551_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_099649024.1\|2065547_2066339_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	9.7e-57	51.0
WP_028718235.1\|2066335_2066998_-	uracil-DNA glycosylase	G0ZLG1	Human_herpesvirus	5.5e-37	48.1
WP_080622047.1\|2066994_2068023_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-58	39.5
WP_028718233.1\|2068019_2068610_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-55	53.4

DBSCAN-SWA_5

2080759 : 2121388

Pseudomonas_phage(16.67%)

terminase,head,plate,tail,portal,integrase,capsid

attL 2078103:2078118|attR 2121607:2121622

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2078103:2078118	attL	NA	NA	NA	NA
WP_157767332.1\|2080759_2081866_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157767333.1\|2081858_2082035_-	hypothetical protein	NA	NA	NA	NA
WP_080622901.1\|2082034_2082310_-	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	1.3e-32	80.0
WP_099649033.1\|2082414_2082693_-	hypothetical protein	NA	NA	NA	NA
WP_099649034.1\|2082689_2084720_-	DNA methyltransferase	A0A1X9HVK8	Ruegeria_phage	7.5e-263	69.5
WP_099649035.1\|2085085_2085400_-	hypothetical protein	NA	NA	NA	NA
WP_099649036.1\|2085396_2085981_-	hypothetical protein	NA	NA	NA	NA
WP_099649037.1\|2085980_2088626_-	DNA methylase N-4	H2BD45	Pseudomonas_phage	0.0e+00	62.2
WP_099649038.1\|2088625_2089282_-	hypothetical protein	B5LJ74	Mycobacterium_phage	8.1e-25	36.0
WP_099649039.1\|2089285_2090395_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	6.8e-32	34.2
WP_157767334.1\|2090385_2090886_-	hypothetical protein	NA	NA	NA	NA
WP_105291552.1\|2091556_2091880_-	hypothetical protein	NA	NA	NA	NA
WP_099649041.1\|2092143_2092434_-	hypothetical protein	NA	NA	NA	NA
WP_099649042.1\|2093321_2094050_-	DUF3800 domain-containing protein	A0A1W6JTE9	Pseudomonas_phage	5.4e-54	47.1
WP_099649043.1\|2094046_2094277_-	hypothetical protein	NA	NA	NA	NA
WP_099649044.1\|2094273_2094492_-	hypothetical protein	NA	NA	NA	NA
WP_099649045.1\|2094553_2095234_-	helix-turn-helix domain-containing protein	H6WBQ3	Rhodobacter_phage	4.0e-11	38.1
WP_099649046.1\|2095301_2095499_+	hypothetical protein	NA	NA	NA	NA
WP_157767335.1\|2095659_2096226_+	hypothetical protein	NA	NA	NA	NA
WP_099649048.1\|2096222_2097107_+	hypothetical protein	K4JW96	Streptococcus_phage	5.1e-06	38.3
WP_099649049.1\|2097103_2097751_+	hypothetical protein	NA	NA	NA	NA
WP_157767336.1\|2097750_2098011_+	hypothetical protein	NA	NA	NA	NA
WP_099649051.1\|2098003_2098459_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_099649052.1\|2098455_2098935_+	hypothetical protein	NA	NA	NA	NA
WP_157767337.1\|2099094_2099736_+	hypothetical protein	NA	NA	NA	NA
WP_099649055.1\|2099817_2100213_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_099649056.1\|2100279_2100468_-	addiction module toxin, HicA family	A0A0R6PJD4	Moraxella_phage	1.1e-06	46.6
WP_099649057.1\|2100568_2101156_+	hypothetical protein	NA	NA	NA	NA
WP_099649058.1\|2101384_2101918_+	hypothetical protein	A0A088C3V1	Shewanella_sp._phage	6.2e-07	35.2
WP_157767338.1\|2101841_2103731_+\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	6.6e-128	43.4
WP_099649060.1\|2103712_2105356_+\|portal	phage portal protein	A0A068CC70	Rhizobium_phage	3.2e-110	41.9
WP_099649061.1\|2105345_2105588_+	hypothetical protein	NA	NA	NA	NA
WP_099649062.1\|2105602_2106595_+	peptidase S14	A0A0A8IKZ4	Aurantimonas_phage	1.2e-83	61.0
WP_099649063.1\|2106607_2106976_+\|head	head decoration protein	NA	NA	NA	NA
WP_099649064.1\|2106979_2108017_+\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	1.7e-109	56.6
WP_157767339.1\|2108027_2108207_+	hypothetical protein	NA	NA	NA	NA
WP_099649065.1\|2108252_2108642_+	hypothetical protein	NA	NA	NA	NA
WP_099649066.1\|2108642_2109377_+	hypothetical protein	NA	NA	NA	NA
WP_099649067.1\|2109369_2109891_+	hypothetical protein	A0A219VHA3	Ochrobactrum_phage	4.2e-08	30.1
WP_157767340.1\|2109901_2110066_+	hypothetical protein	NA	NA	NA	NA
WP_099650082.1\|2110091_2110394_+\|plate	baseplate assembly protein	K4I3Z7	Acidithiobacillus_phage	2.4e-16	45.9
WP_099649068.1\|2110390_2111281_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	3.9e-54	45.7
WP_099649069.1\|2111284_2111842_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	7.6e-16	48.4
WP_099649070.1\|2111841_2112816_+	hypothetical protein	A4JWL8	Burkholderia_virus	1.6e-08	58.7
WP_099649071.1\|2112882_2114067_+	hypothetical protein	A0A0M3LPE9	Mannheimia_phage	2.7e-10	28.8
WP_099649072.1\|2114079_2114595_+\|tail	phage tail protein	NA	NA	NA	NA
WP_099649073.1\|2114591_2114900_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_099649074.1\|2115051_2115660_-	NAD-dependent DNA ligase	A0A0U4J8W4	Pseudomonas_phage	2.2e-32	38.3
WP_099649075.1\|2115715_2116105_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_157767341.1\|2116203_2116467_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_099650083.1\|2116453_2117308_+	KilA-N domain-containing protein	Q71TC0	Escherichia_phage	3.4e-31	54.5
WP_099649076.1\|2117304_2117607_+	hypothetical protein	NA	NA	NA	NA
WP_157767342.1\|2117677_2117851_+	hypothetical protein	NA	NA	NA	NA
WP_099649077.1\|2117847_2118189_+	hypothetical protein	NA	NA	NA	NA
WP_099649078.1\|2118237_2120739_+\|tail	phage tail tape measure protein	A0A088FV68	Escherichia_phage	1.5e-58	36.8
WP_099649079.1\|2120738_2121182_+	oxidoreductase	NA	NA	NA	NA
WP_099649080.1\|2121178_2121388_+\|tail	phage tail protein	K4PAW7	Burkholderia_phage	1.7e-08	42.4
2121607:2121622	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2349741 : 2434391

Enterobacteria_phage(16.67%)

holin,transposase,tail,integrase

attL 2346127:2346144|attR 2370263:2370280

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2346127:2346144	attL	NA	NA	NA	NA
WP_099649217.1\|2349741_2350800_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-24	37.5
WP_099649218.1\|2350831_2352874_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_099649219.1\|2352923_2353622_+	CoA transferase subunit A	NA	NA	NA	NA
WP_099649220.1\|2353624_2354254_+	CoA transferase subunit B	NA	NA	NA	NA
WP_099649221.1\|2354514_2355171_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_099649222.1\|2355183_2355834_+	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_099649223.1\|2356670_2357633_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_099649224.1\|2357727_2358270_+	cysteine hydrolase	NA	NA	NA	NA
WP_099649225.1\|2358396_2359170_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_099649226.1\|2359905_2360901_-	hydroxyacid dehydrogenase	M1NSB9	Streptococcus_phage	8.0e-24	31.1
WP_099649227.1\|2360990_2361308_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_099649228.1\|2361463_2361970_+	hypothetical protein	NA	NA	NA	NA
WP_157767349.1\|2362580_2364005_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_099649230.1\|2364004_2364520_-	hypothetical protein	NA	NA	NA	NA
WP_099649231.1\|2364833_2366174_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_099649232.1\|2366163_2366424_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099647977.1\|2367142_2368369_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099649233.1\|2368818_2369574_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	5.3e-12	34.5
WP_099649234.1\|2369575_2370328_-	SDR family oxidoreductase	NA	NA	NA	NA
2370263:2370280	attR	NA	NA	NA	NA
WP_099649235.1\|2370324_2371356_-	proline racemase	NA	NA	NA	NA
WP_099649236.1\|2371352_2372822_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_099649237.1\|2372830_2373529_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_099649238.1\|2373541_2374774_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_099649239.1\|2374836_2375715_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_099650096.1\|2375730_2376396_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_099649240.1\|2376415_2377078_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_099650097.1\|2377086_2377854_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-26	35.9
WP_099649241.1\|2377949_2378777_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_099649242.1\|2378959_2379667_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_099649243.1\|2380974_2381628_+	hypothetical protein	NA	NA	NA	NA
WP_157767350.1\|2383045_2383489_+	hypothetical protein	NA	NA	NA	NA
WP_099649246.1\|2383576_2384023_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_157767351.1\|2384566_2384770_+	hypothetical protein	NA	NA	NA	NA
WP_099649247.1\|2385493_2386345_+	sulfurtransferase	NA	NA	NA	NA
WP_099649248.1\|2386341_2387706_+	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	2.2e-32	75.3
WP_099647938.1\|2387870_2389310_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_099649249.1\|2389488_2391207_+	hypothetical protein	A0A1W6JT50	Escherichia_phage	5.3e-07	28.4
WP_099649250.1\|2391199_2391610_+\|tail	phage tail protein	K4I406	Acidithiobacillus_phage	7.3e-32	51.6
WP_099649251.1\|2391606_2391819_+\|tail	phage tail protein	R9TR63	Vibrio_phage	6.2e-11	53.7
WP_099649252.1\|2391815_2392793_+\|tail	phage tail protein	A0A0A7NQ97	Enterobacteria_phage	9.9e-35	32.2
WP_099649253.1\|2392823_2393060_+	hypothetical protein	NA	NA	NA	NA
WP_099649254.1\|2393059_2394262_+	hypothetical protein	NA	NA	NA	NA
WP_157767352.1\|2394462_2394666_+	hypothetical protein	NA	NA	NA	NA
WP_099649256.1\|2394959_2396300_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_099649257.1\|2396289_2396550_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099649258.1\|2396905_2397919_-	Ldh family oxidoreductase	NA	NA	NA	NA
WP_099649259.1\|2397928_2398549_-	DUF3726 domain-containing protein	NA	NA	NA	NA
WP_099649260.1\|2398545_2400147_-	hypothetical protein	NA	NA	NA	NA
WP_099649261.1\|2400206_2401190_-	peptidase M19	NA	NA	NA	NA
WP_099649262.1\|2401186_2402638_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_099649263.1\|2402656_2403736_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-22	34.4
WP_099649264.1\|2403739_2404612_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_099649265.1\|2404713_2405727_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_099649266.1\|2405855_2406788_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_099649267.1\|2406848_2407877_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.9e-13	27.9
WP_099649268.1\|2408240_2409242_-	membrane dipeptidase	NA	NA	NA	NA
WP_099649269.1\|2409260_2410331_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.2e-21	52.1
WP_099649270.1\|2410342_2411158_-	ABC transporter permease	NA	NA	NA	NA
WP_099649271.1\|2411154_2412063_-	ABC transporter permease	NA	NA	NA	NA
WP_099649272.1\|2412106_2413171_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_099649273.1\|2413305_2414226_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_099649274.1\|2414229_2415126_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	6.5e-09	23.8
WP_080620444.1\|2415299_2416022_+	isochorismatase family protein	NA	NA	NA	NA
WP_099649275.1\|2416111_2418187_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_099649276.1\|2418188_2419970_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_099649277.1\|2420078_2421578_+	nitrate reductase	NA	NA	NA	NA
WP_099648499.1\|2422123_2423056_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	7.7e-45	35.6
WP_099649278.1\|2423411_2424407_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_099649279.1\|2424374_2425274_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_099649280.1\|2425379_2426612_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_099649281.1\|2426743_2428072_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.0e-67	36.2
WP_147405539.1\|2428155_2428857_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_080620435.1\|2429045_2430122_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_099649283.1\|2430256_2431285_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_099649284.1\|2431602_2432535_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.1e-56	39.9
WP_099648849.1\|2433452_2434391_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	4.0e-33	36.2

DBSCAN-SWA_7

2457122 : 2527542

Paenibacillus_phage(35.71%)

transposase,integrase,portal

attL 2469846:2469905|attR 2515464:2515749

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099649304.1\|2457122_2458352_+\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	2.3e-36	33.0
WP_099647977.1\|2459787_2461014_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099649305.1\|2461122_2462256_+	hypothetical protein	NA	NA	NA	NA
WP_099649306.1\|2462252_2462975_+	hypothetical protein	NA	NA	NA	NA
WP_099649307.1\|2462985_2464434_+	SAM-dependent DNA methyltransferase	J7I0U9	Acinetobacter_phage	9.5e-26	28.7
WP_099649308.1\|2464430_2466167_+	hypothetical protein	NA	NA	NA	NA
WP_099647977.1\|2466730_2467957_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099649309.1\|2468280_2468751_+	hypothetical protein	Q71TB7	Escherichia_phage	7.1e-23	36.5
2469846:2469905	attL	NA	NA	NA	NA
WP_099649310.1\|2472056_2473283_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.0e-29	30.1
WP_099648849.1\|2474117_2475056_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	4.0e-33	36.2
WP_157767355.1\|2476332_2477298_+	hypothetical protein	NA	NA	NA	NA
WP_157767356.1\|2477326_2486788_+	hypothetical protein	NA	NA	NA	NA
WP_099649313.1\|2486787_2489220_+	hypothetical protein	NA	NA	NA	NA
WP_099648499.1\|2489246_2490179_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	7.7e-45	35.6
WP_099649314.1\|2490368_2490731_+\|transposase	transposase	NA	NA	NA	NA
WP_099649315.1\|2490724_2491078_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_099649316.1\|2491132_2492683_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.1e-102	43.7
WP_147405547.1\|2492751_2493153_-	hypothetical protein	NA	NA	NA	NA
WP_099650099.1\|2494531_2494834_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_080622741.1\|2494869_2495169_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_099648611.1\|2495319_2496508_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-48	42.9
WP_099649310.1\|2497319_2498546_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.0e-29	30.1
WP_157767357.1\|2498578_2498731_+	hypothetical protein	NA	NA	NA	NA
WP_147405548.1\|2499146_2500103_-	hypothetical protein	NA	NA	NA	NA
WP_099649319.1\|2501446_2502049_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099649320.1\|2502969_2503305_-	hypothetical protein	NA	NA	NA	NA
WP_157767358.1\|2503431_2503623_-	hypothetical protein	NA	NA	NA	NA
WP_099649322.1\|2503888_2504419_+	hypothetical protein	NA	NA	NA	NA
WP_099649323.1\|2504688_2505021_-	hypothetical protein	NA	NA	NA	NA
WP_099649325.1\|2506629_2506872_-	hypothetical protein	NA	NA	NA	NA
WP_099649326.1\|2506882_2508811_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_099649327.1\|2509222_2509816_-	hypothetical protein	NA	NA	NA	NA
WP_099649328.1\|2509815_2510208_-	hypothetical protein	NA	NA	NA	NA
WP_099649329.1\|2510351_2510777_-	hypothetical protein	NA	NA	NA	NA
WP_099649330.1\|2511022_2512360_+	hypothetical protein	NA	NA	NA	NA
WP_099649331.1\|2512638_2513784_-	hypothetical protein	NA	NA	NA	NA
WP_157767359.1\|2513813_2514170_-	hypothetical protein	NA	NA	NA	NA
WP_099647977.1\|2514456_2515683_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099649333.1\|2516823_2517549_+	hypothetical protein	NA	NA	NA	NA
2515464:2515749	attR	NA	NA	NA	NA
WP_157767360.1\|2517563_2517935_-	hypothetical protein	NA	NA	NA	NA
WP_099649334.1\|2517947_2518256_-	hypothetical protein	NA	NA	NA	NA
WP_157767361.1\|2518382_2518631_-	hypothetical protein	NA	NA	NA	NA
WP_099649336.1\|2519882_2520509_+	hypothetical protein	NA	NA	NA	NA
WP_099649337.1\|2520498_2522592_+	hypothetical protein	G8EXZ6	Synechococcus_phage	1.8e-78	33.3
WP_157767362.1\|2522770_2523949_+	hypothetical protein	NA	NA	NA	NA
WP_099649339.1\|2523948_2525004_+	hypothetical protein	NA	NA	NA	NA
WP_099649340.1\|2525339_2525576_+	hypothetical protein	NA	NA	NA	NA
WP_099649341.1\|2525572_2526106_+	hypothetical protein	NA	NA	NA	NA
WP_099649342.1\|2526105_2527542_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	8.2e-30	26.8

DBSCAN-SWA_8

2643367 : 2706249

Acidithiobacillus_phage(25.81%)

terminase,head,protease,tail,transposase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099649422.1\|2643367_2644540_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_099649423.1\|2646716_2647922_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_035745640.1\|2648014_2648779_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_035745643.1\|2648775_2649945_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_097031787.1\|2649941_2651336_-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	NA	NA	NA	NA
WP_051693716.1\|2651340_2653098_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_157767373.1\|2653416_2654367_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_068767091.1\|2654501_2655614_-	ABC transporter permease	NA	NA	NA	NA
WP_068767090.1\|2655621_2658360_-	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	4.1e-22	29.0
WP_035745651.1\|2658356_2659424_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_157767374.1\|2659532_2660339_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_099649424.1\|2660668_2664016_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	4.4e-82	27.0
WP_099649425.1\|2664012_2665512_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_084451117.1\|2665438_2666026_-	hypothetical protein	NA	NA	NA	NA
WP_097031794.1\|2666030_2666711_-	DUF159 family protein	A0A291AUP1	Sinorhizobium_phage	1.0e-38	40.2
WP_097031795.1\|2667005_2668928_-	DUF2793 domain-containing protein	A0A0K1LM04	Rhodobacter_phage	9.3e-29	28.1
WP_099649426.1\|2668949_2672915_-	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	1.2e-261	41.4
WP_099649427.1\|2672924_2673371_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	2.5e-30	47.1
WP_099649428.1\|2673367_2674252_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	9.1e-64	45.9
WP_147273288.1\|2674248_2674437_-	hypothetical protein	NA	NA	NA	NA
WP_147273289.1\|2674378_2674609_-	hypothetical protein	NA	NA	NA	NA
WP_099649431.1\|2674695_2674926_-	hypothetical protein	NA	NA	NA	NA
WP_099649432.1\|2674929_2675589_-	lysozyme	F8TV87	EBPR_siphovirus	4.0e-40	47.7
WP_099649433.1\|2675717_2676068_-	hypothetical protein	NA	NA	NA	NA
WP_099649434.1\|2676064_2676691_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	3.9e-61	57.3
WP_099649435.1\|2676690_2679150_-\|tail	phage tail tape-measure protein	A0A1J0GUY9	Halomonas_phage	8.3e-22	36.6
WP_099649436.1\|2679369_2679825_-	hypothetical protein	NA	NA	NA	NA
WP_099649437.1\|2679843_2680776_-\|transposase	transposase	Q75QL1	Wolbachia_phage	1.9e-19	31.2
WP_099649438.1\|2680985_2681930_-	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	2.3e-97	56.5
WP_099649439.1\|2681954_2682374_-	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	3.4e-37	57.1
WP_141400098.1\|2682461_2682839_+	hypothetical protein	NA	NA	NA	NA
WP_097031799.1\|2682881_2683514_-	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	3.6e-54	54.9
WP_097031800.1\|2683519_2683834_-	hypothetical protein	NA	NA	NA	NA
WP_097031801.1\|2683849_2684695_+	hypothetical protein	NA	NA	NA	NA
WP_097031802.1\|2684696_2685710_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	4.4e-46	34.7
WP_097031803.1\|2685735_2686101_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.1e-07	43.0
WP_097031804.1\|2686105_2687131_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	5.8e-46	51.4
WP_093359498.1\|2688660_2688876_-	hypothetical protein	K4HZB1	Acidithiobacillus_phage	7.2e-07	47.8
WP_099649440.1\|2688879_2690880_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	1.2e-212	60.5
WP_099649441.1\|2690827_2691424_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	3.0e-26	42.5
WP_099649442.1\|2691535_2691796_+	hypothetical protein	NA	NA	NA	NA
WP_068767878.1\|2691886_2692459_+	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	2.6e-11	33.7
WP_068767877.1\|2692512_2692737_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	1.1e-13	60.6
WP_068767875.1\|2693734_2695060_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	1.6e-75	38.0
WP_099649443.1\|2695497_2695932_-	hypothetical protein	NA	NA	NA	NA
WP_099650103.1\|2695924_2696119_-	hypothetical protein	NA	NA	NA	NA
WP_099649444.1\|2696124_2696649_-	HNH endonuclease	A0A1B3B1U5	Gordonia_phage	4.3e-21	39.2
WP_099650104.1\|2696645_2697149_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.7e-52	65.1
WP_036706694.1\|2697602_2700182_-	P-loop ATPase	A0A2D1GN57	Marinobacter_phage	2.9e-70	37.6
WP_036706696.1\|2700249_2701569_-	AAA family ATPase	A0A0F6SJ43	Sinorhizobium_phage	3.0e-63	37.4
WP_099649445.1\|2701561_2702314_-	hypothetical protein	NA	NA	NA	NA
WP_099649446.1\|2702310_2703108_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	2.0e-65	51.8
WP_099649447.1\|2703104_2703320_-	hypothetical protein	NA	NA	NA	NA
WP_099649448.1\|2703330_2703702_-	hypothetical protein	NA	NA	NA	NA
WP_099649449.1\|2703698_2703902_-	hypothetical protein	NA	NA	NA	NA
WP_099649450.1\|2703981_2704752_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.6e-19	36.3
WP_099649451.1\|2704771_2705629_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	9.2e-61	46.1
WP_036706715.1\|2705730_2706249_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	4.6e-23	39.6

DBSCAN-SWA_9

2725398 : 2761591

Acidithiobacillus_phage(26.92%)

terminase,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099649464.1\|2725398_2727321_-	DUF2793 domain-containing protein	A0A0K1LM04	Rhodobacter_phage	3.0e-27	26.7
WP_099649465.1\|2727330_2731296_-	hypothetical protein	F4YXU5	Roseobacter_phage	2.1e-256	41.6
WP_099649466.1\|2731305_2731740_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	7.2e-30	50.0
WP_099649467.1\|2731736_2732621_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	4.1e-64	43.9
WP_099649468.1\|2732617_2732827_-	hypothetical protein	NA	NA	NA	NA
WP_099649469.1\|2732823_2733492_-	lysozyme	F8TV87	EBPR_siphovirus	7.4e-42	46.4
WP_099649470.1\|2733623_2733974_-	hypothetical protein	NA	NA	NA	NA
WP_099649471.1\|2733970_2734597_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.1e-58	54.9
WP_099649472.1\|2734596_2737038_-\|tail	phage tail tape-measure protein	A0A0K1LL85	Rhodobacter_phage	2.0e-15	53.1
WP_099649473.1\|2737257_2737695_-	hypothetical protein	NA	NA	NA	NA
WP_099649474.1\|2737697_2738636_-	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	5.6e-96	58.0
WP_099649475.1\|2738660_2739080_-	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	5.7e-40	61.4
WP_157767375.1\|2739164_2739794_+	hypothetical protein	NA	NA	NA	NA
WP_099649476.1\|2739800_2740430_-	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	7.5e-52	52.4
WP_099649477.1\|2740426_2740738_-	hypothetical protein	NA	NA	NA	NA
WP_099649478.1\|2740737_2741073_-	DUF2190 family protein	NA	NA	NA	NA
WP_099649479.1\|2741153_2743187_-	peptidase U37	A0A2I7S8L6	Vibrio_phage	7.9e-87	33.5
WP_099649480.1\|2743191_2744724_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	4.7e-84	38.6
WP_099649481.1\|2744723_2744933_-	hypothetical protein	NA	NA	NA	NA
WP_099649482.1\|2744934_2746941_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	4.0e-216	60.4
WP_099649483.1\|2746888_2747449_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	3.2e-30	46.4
WP_099649484.1\|2747560_2747785_+	hypothetical protein	NA	NA	NA	NA
WP_099649485.1\|2747873_2748446_+	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	7.3e-14	36.9
WP_099649486.1\|2748629_2749232_+	hypothetical protein	NA	NA	NA	NA
WP_099649487.1\|2749225_2749459_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	1.7e-17	66.7
WP_099649488.1\|2749468_2750650_-	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	1.5e-32	39.9
WP_099649489.1\|2750651_2751992_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	6.4e-77	39.5
WP_099649490.1\|2752410_2752791_-	RNA polymerase subunit sigma	NA	NA	NA	NA
WP_071796301.1\|2752783_2752984_-	hypothetical protein	NA	NA	NA	NA
WP_099650108.1\|2752980_2753469_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.4e-50	61.2
WP_099649491.1\|2753860_2756227_-	AAA family ATPase	A0A1B2LRS1	Wolbachia_phage	4.0e-74	51.6
WP_099649492.1\|2756178_2756949_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	9.4e-73	54.2
WP_099650109.1\|2756945_2757152_-	hypothetical protein	NA	NA	NA	NA
WP_099649493.1\|2757359_2759048_-	DEAD/DEAH box helicase	A0A2D1GP10	Streptomyces_phage	7.4e-46	36.8
WP_099649494.1\|2759062_2759686_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	3.5e-54	54.9
WP_099649495.1\|2759703_2760591_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	2.8e-97	61.1
WP_099649496.1\|2760590_2760887_-	hypothetical protein	NA	NA	NA	NA
WP_099649497.1\|2760883_2761372_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	1.7e-27	43.6
WP_099649498.1\|2761381_2761591_-	helix-turn-helix domain-containing protein	A0A221SAQ3	Ralstonia_phage	5.4e-07	43.4

DBSCAN-SWA_10

3282264 : 3336759

Paenibacillus_phage(14.29%)

tRNA,transposase,integrase

attL 3294843:3294859|attR 3338212:3338228

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099649794.1\|3282264_3283245_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_099650143.1\|3283547_3284339_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_099649795.1\|3284335_3285001_+	adenosylcobinamide amidohydrolase	NA	NA	NA	NA
WP_080622308.1\|3285090_3285333_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_080622307.1\|3285412_3285775_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_099649796.1\|3285844_3286741_-	Hint domain-containing protein	NA	NA	NA	NA
WP_028720975.1\|3287200_3287971_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_099649797.1\|3288093_3289008_-	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA
WP_099649798.1\|3289232_3289592_+	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	5.2e-18	47.0
WP_099650144.1\|3289669_3290509_+	histidinol-phosphatase	NA	NA	NA	NA
WP_099649799.1\|3290572_3291958_+	magnesium transporter	NA	NA	NA	NA
WP_099649800.1\|3291942_3292503_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_099649801.1\|3292893_3296490_+	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	56.2
3294843:3294859	attL	NA	NA	NA	NA
WP_157767383.1\|3297059_3297578_+	hypothetical protein	NA	NA	NA	NA
WP_157767384.1\|3297663_3299766_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_157767385.1\|3299758_3300382_+	AAA family ATPase	NA	NA	NA	NA
WP_099649805.1\|3300354_3300660_+	hypothetical protein	NA	NA	NA	NA
WP_099649806.1\|3300666_3302517_+	hypothetical protein	NA	NA	NA	NA
WP_099647977.1\|3304275_3305502_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099649807.1\|3305685_3306423_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_099649808.1\|3306419_3307184_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.5e-11	28.4
WP_099649809.1\|3307598_3308636_+	cation diffusion facilitator family transporter	A0A1V0SED0	Indivirus	6.2e-19	25.9
WP_051577892.1\|3308679_3308991_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_099649810.1\|3309093_3310254_-	MFS transporter	NA	NA	NA	NA
WP_099649811.1\|3310253_3311444_-	serine hydrolase	NA	NA	NA	NA
WP_028718723.1\|3311558_3312482_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_099649812.1\|3312734_3313874_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-24	31.7
WP_099649813.1\|3313864_3314833_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_099649814.1\|3314839_3316561_+	iron ABC transporter permease	NA	NA	NA	NA
WP_099649815.1\|3317597_3318182_+	protein phosphatase	NA	NA	NA	NA
WP_099649816.1\|3318289_3319420_-	MFS transporter	NA	NA	NA	NA
WP_099649817.1\|3319552_3320002_-	DUF1810 domain-containing protein	A0A2H4UVK5	Bodo_saltans_virus	5.9e-11	41.8
WP_157767405.1\|3321138_3322413_+	calcium-binding protein	NA	NA	NA	NA
WP_099649818.1\|3322506_3324624_-	catalase	A0A2K9L572	Tupanvirus	4.2e-139	50.0
WP_157767386.1\|3324824_3325379_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_099649820.1\|3325365_3326058_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_157767387.1\|3326054_3327095_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_157767388.1\|3327094_3328126_-	glycosyltransferase	NA	NA	NA	NA
WP_099649823.1\|3328328_3329009_+	DUF159 family protein	A0A291AUP1	Sinorhizobium_phage	1.1e-37	45.1
WP_099649824.1\|3329109_3330159_+	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.2e-67	42.7
WP_099649825.1\|3330162_3330861_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_099649826.1\|3330934_3331126_-	hypothetical protein	NA	NA	NA	NA
WP_099649827.1\|3331106_3332193_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.1e-46	38.4
WP_099649828.1\|3332329_3332620_+	hypothetical protein	NA	NA	NA	NA
WP_099649829.1\|3332619_3332994_+	hypothetical protein	NA	NA	NA	NA
WP_099649830.1\|3333250_3333478_+	hypothetical protein	NA	NA	NA	NA
WP_099649831.1\|3333474_3333837_+	regulator	NA	NA	NA	NA
WP_099649832.1\|3333833_3334151_+	hypothetical protein	NA	NA	NA	NA
WP_099649833.1\|3334143_3334749_+	hypothetical protein	K7PHA5	Enterobacterial_phage	2.7e-19	39.4
WP_099649834.1\|3334761_3335118_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_099647977.1\|3335177_3336404_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-29	30.4
WP_099650146.1\|3336345_3336759_+\|integrase	tyrosine-type recombinase/integrase	Q9T1P3	Pseudomonas_phage	8.7e-09	40.7
3338212:3338228	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP024422.1|WP_099649828.1|3332329_3332620_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP024422.1|WP_099649828.1|3332329_3332620_+|hypothetical-protein

3332329_3332620_+

96 aa aa

WHTH_GntR,HTH_Tnp_1

Identity	Hit_domain_coverage
0.43859649122807015	0.8636363636363636

3282264-3336759

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP024422_4	Orphan	4.2\|2493988\|32\|NZ_CP024422\|PILER-CR,CRT	2493988-2494019	32	3334398-3334367	0

1. spacer 4.2|2493988|32|NZ_CP024422|PILER-CR,CRT matches to NZ_CP024422 position: 3334398-3334367, mismatch: 0

cctctcgacctcggcccgcaggtcggcctctg	CRISPR spacer
cctctcgacctcggcccgcaggtcggcctctg	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024423

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024425

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP024422

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information