CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP024497	Klebsiella pneumoniae strain KSB1_7E plasmid unnamed1, complete sequence	0 crisprs	NA	2
NZ_CP024496	Klebsiella pneumoniae strain KSB1_7E chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG,WYL	7
NZ_CP024498	Klebsiella pneumoniae strain KSB1_7E plasmid unnamed2, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7982 : 18728

Salmonella_phage(40.0%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099745222.1\|7982_8303_+	hypothetical protein	J9Q750	Salmonella_phage	2.5e-27	50.0
WP_099745223.1\|8382_8697_+	hypothetical protein	NA	NA	NA	NA
WP_099745224.1\|8819_9056_+	hypothetical protein	S5MQM0	Escherichia_phage	1.0e-22	76.7
WP_099745225.1\|9236_9455_+	hypothetical protein	R9TRD3	Aeromonas_phage	3.7e-19	65.2
WP_099745226.1\|9548_10046_+	hypothetical protein	A0A076G835	Escherichia_phage	5.0e-27	56.2
WP_099745227.1\|10042_10231_+	hypothetical protein	NA	NA	NA	NA
WP_099745231.1\|12226_12442_+	hypothetical protein	NA	NA	NA	NA
WP_099745232.1\|12488_12992_+	hypothetical protein	A0A1V0E5L6	Salmonella_phage	1.6e-25	67.5
WP_099745339.1\|13022_13538_+	DUF262 domain-containing protein	A0A2H4FWH2	Salmonella_phage	1.7e-65	68.2
WP_099745233.1\|13534_14422_+	hypothetical protein	A0A248SKW5	Klebsiella_phage	1.3e-20	54.4
WP_099745340.1\|14421_14616_+	hypothetical protein	NA	NA	NA	NA
WP_157769349.1\|14917_15091_+	hypothetical protein	NA	NA	NA	NA
WP_004197207.1\|15174_15447_+	hypothetical protein	I7B2L9	Escherichia_phage	1.5e-12	48.9
WP_099745234.1\|15727_16015_+	hypothetical protein	NA	NA	NA	NA
WP_004197199.1\|16471_16996_+	hypothetical protein	NA	NA	NA	NA
WP_004197222.1\|17059_17827_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.5e-43	62.7
WP_099745235.1\|18278_18728_+\|tail	phage tail protein	A0A1I9KFG8	Aeromonas_phage	1.3e-18	42.9

DBSCAN-SWA_2

188846 : 196829

Burkholderia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099745319.1\|188846_189425_+	HNH endonuclease	W0LI46	Edwardsiella_phage	1.2e-40	56.2
WP_032719502.1\|189415_189730_-	hypothetical protein	NA	NA	NA	NA
WP_099745320.1\|189854_190433_+	DNA-binding protein	Q1MVE8	Enterobacteria_phage	3.2e-57	55.3
WP_032719501.1\|190448_190808_-	hypothetical protein	NA	NA	NA	NA
WP_099745321.1\|191038_191476_+	hypothetical protein	NA	NA	NA	NA
WP_099745323.1\|191734_191995_+	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	4.5e-11	45.9
WP_099745324.1\|192027_192462_+	hypothetical protein	NA	NA	NA	NA
WP_032719495.1\|192546_192876_+	hypothetical protein	A0A060D1I0	Salmonella_phage	4.3e-11	62.2
WP_099745325.1\|192947_194363_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.5e-105	51.1
WP_099745326.1\|194454_195657_-	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	38.6
WP_099745327.1\|196235_196484_+	hypothetical protein	NA	NA	NA	NA
WP_099745328.1\|196511_196829_+	DUF3846 domain-containing protein	A0A2H4P7A4	Pseudomonas_phage	3.0e-09	46.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024496

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024496_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024496_1

2057619-2057724

Orphan

Consensus_repeat	Method
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024496_1

>merge|NZ_CP024496|1|2057619-2057724|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG

>NZ_CP024496|1|1|2057619-2057724|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG	AACAGGTGGCTGAGAGTGCAGGAATG
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024496.1\|WP_002910193.1\|2053201_2054737_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP024496.1\|WP_002910100.1\|2064290_2064908_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP024496.1\|WP_004148754.1\|2069591_2071226_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NZ_CP024496.1\|WP_004152249.1\|2057121_2057565_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP024496.1\|WP_004151854.1\|2058638_2059481_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP024496.1\|WP_002910189.1\|2055443_2056121_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NZ_CP024496.1\|WP_004175566.1\|2045577_2047356_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
NZ_CP024496.1\|WP_004175568.1\|2047667_2049056_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP024496.1\|WP_002910097.1\|2065054_2067730_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_CP024496.1\|WP_002910103.1\|2063321_2063729_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NZ_CP024496.1\|WP_002910108.1\|2060094_2060997_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
NZ_CP024496.1\|WP_002910191.1\|2054733_2055444_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_CP024496.1\|WP_002910105.1\|2062297_2063200_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP024496.1\|WP_002910109.1\|2059523_2059982_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NZ_CP024496.1\|WP_002910107.1\|2061086_2062100_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
NZ_CP024496.1\|WP_004189443.1\|2049461_2053205_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP024496.1\|WP_040148354.1\|2056117_2057014_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP024496.1\|WP_002910095.1\|2068206_2068854_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
NZ_CP024496.1\|WP_002910198.1\|2044916_2045567_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP024496.1\|WP_002910201.1\|2043537_2044920_+\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661

Protein	Function_ID	Function_description	E-value
NZ_CP024496.1\|WP_002910193.1\|2053201_2054737_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP024496.1\|WP_002910100.1\|2064290_2064908_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.66434e-117
NZ_CP024496.1\|WP_004148754.1\|2069591_2071226_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP024496.1\|WP_004152249.1\|2057121_2057565_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32
NZ_CP024496.1\|WP_004151854.1\|2058638_2059481_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
NZ_CP024496.1\|WP_002910189.1\|2055443_2056121_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
NZ_CP024496.1\|WP_004175566.1\|2045577_2047356_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
NZ_CP024496.1\|WP_004175568.1\|2047667_2049056_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP024496.1\|WP_002910097.1\|2065054_2067730_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_CP024496.1\|WP_002910103.1\|2063321_2063729_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
NZ_CP024496.1\|WP_002910108.1\|2060094_2060997_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
NZ_CP024496.1\|WP_002910191.1\|2054733_2055444_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83
NZ_CP024496.1\|WP_002910105.1\|2062297_2063200_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_CP024496.1\|WP_002910109.1\|2059523_2059982_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	7.51559e-107
NZ_CP024496.1\|WP_002910107.1\|2061086_2062100_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
NZ_CP024496.1\|WP_004189443.1\|2049461_2053205_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP024496.1\|WP_040148354.1\|2056117_2057014_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.06701e-15
NZ_CP024496.1\|WP_002910095.1\|2068206_2068854_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	5.03226e-138
NZ_CP024496.1\|WP_002910198.1\|2044916_2045567_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140
NZ_CP024496.1\|WP_002910201.1\|2043537_2044920_+\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0

>NZ_CP024496.1|WP_004152249.1|2057121_2057565_+|Lrp/AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>NZ_CP024496.1|WP_040148354.1|2056117_2057014_-|DMT-family-transporter
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVTDVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGLVILLSSELTPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFNHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>NZ_CP024496.1|WP_002910189.1|2055443_2056121_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>NZ_CP024496.1|WP_002910191.1|2054733_2055444_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>NZ_CP024496.1|WP_002910193.1|2053201_2054737_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>NZ_CP024496.1|WP_004189443.1|2049461_2053205_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>NZ_CP024496.1|WP_004175568.1|2047667_2049056_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>NZ_CP024496.1|WP_004175566.1|2045577_2047356_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>NZ_CP024496.1|WP_002910198.1|2044916_2045567_-|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>NZ_CP024496.1|WP_002910201.1|2043537_2044920_+|YchO/YchP-family-invasin
MPVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>NZ_CP024496.1|WP_004151854.1|2058638_2059481_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>NZ_CP024496.1|WP_002910109.1|2059523_2059982_-|YchJ-family-protein
MSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>NZ_CP024496.1|WP_002910108.1|2060094_2060997_+|patatin-like-phospholipase-RssA
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>NZ_CP024496.1|WP_002910107.1|2061086_2062100_+|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>NZ_CP024496.1|WP_002910105.1|2062297_2063200_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>NZ_CP024496.1|WP_002910103.1|2063321_2063729_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>NZ_CP024496.1|WP_002910100.1|2064290_2064908_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRPC
>NZ_CP024496.1|WP_002910097.1|2065054_2067730_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>NZ_CP024496.1|WP_002910095.1|2068206_2068854_+|YchE-family-NAAT-transporter
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS
>NZ_CP024496.1|WP_004148754.1|2069591_2071226_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MTIITKKRLIAAGVLSALIAGNMAMAADVPAGVQLAEKQTLVRNSGAEPQSLDPNKIEGVPEANISRDLFEGLLNTSPKDGHPIPGVAESWDNKDFKVWTFHLRKDAKWSNGEPVTAQDFVYSWQRLVDPKTASPYASYPQYGHIVNVDEIIDGKKAPSELGVKAIDDHTLEVTLSEPVPYFYKLLVNPAMSPVYKPAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVMERNPHYWDNAKTVINTVTWLPTSSEVTYVNRYRSGELDMTYNQLPIELFQKLKKEIPNELHVDPYLCTYYYEINNQKAPFTDVRVRTALKLGLDRDIIANKVKGQGDLPAYGYTPPYTDGAKLSEPEWFTWSQEKRNEEAKKLLAEAGYSADKPLTFNLLYNTSDLHKKLAIAAASLWRKNLGIDVKLVNQEWKTFLDTRHQGTYDVARAGWCADYNEPTSFLNTMLSDSSMNTAHYKSPAFDKIMAESVKASDEAQRTAAYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPMDNVYTKDLYVIKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1318409 : 1327846

Morganella_phage(57.14%)

integrase

attL 1307673:1307686|attR 1325872:1325885

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1307673:1307686	attL	NA	NA	NA	NA
WP_029602776.1\|1318409_1319678_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.3e-147	60.8
WP_004866318.1\|1319685_1320639_+	hypothetical protein	NA	NA	NA	NA
WP_004866314.1\|1320765_1320984_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004866312.1\|1320983_1321418_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	8.3e-26	50.0
WP_004866309.1\|1321431_1322241_+	hypothetical protein	A0A0R6PJV6	Moraxella_phage	1.3e-29	53.8
WP_004866306.1\|1322272_1322845_+	hypothetical protein	A0A1W6JPH8	Morganella_phage	8.0e-53	59.0
WP_004866303.1\|1322844_1323024_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_004866300.1\|1323020_1323980_+	ash family protein	A0A291AWU3	Escherichia_phage	3.8e-07	44.3
WP_004866297.1\|1323976_1324237_+	hypothetical protein	NA	NA	NA	NA
WP_004866294.1\|1324233_1324446_+	hypothetical protein	NA	NA	NA	NA
WP_004866292.1\|1324442_1325069_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.2e-24	34.2
WP_004866290.1\|1325083_1327846_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.3e-294	57.4
1325872:1325885	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1674109 : 1681031

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1674109_1674973_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_040147198.1\|1674983_1675772_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-26	37.2
WP_002912636.1\|1676014_1676908_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_040147196.1\|1677153_1678515_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1678833_1679556_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1679552_1681031_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

1756117 : 1768744

Salmonella_phage(22.22%)

integrase

attL 1747872:1747886|attR 1764417:1764431

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1747872:1747886	attL	NA	NA	NA	NA
WP_004180492.1\|1756117_1758220_+	elongation factor G	E4ZFJ7	Streptococcus_phage	2.2e-63	27.9
WP_040147817.1\|1758436_1759867_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_040147819.1\|1760041_1761223_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	4.0e-200	83.5
WP_077255481.1\|1761203_1761395_-	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	2.1e-18	73.8
WP_040147822.1\|1761405_1762812_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	2.5e-209	72.8
WP_040147824.1\|1762852_1763464_+	hypothetical protein	NA	NA	NA	NA
WP_157769347.1\|1763483_1763636_+	hypothetical protein	NA	NA	NA	NA
WP_040147826.1\|1763632_1763929_-	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	2.1e-25	65.9
WP_040147827.1\|1763928_1764150_-	hypothetical protein	K7PLX1	Enterobacteria_phage	3.4e-20	74.6
WP_040147829.1\|1764234_1764462_-	ANR family transcriptional regulator	NA	NA	NA	NA
1764417:1764431	attR	NA	NA	NA	NA
WP_040147830.1\|1764467_1766534_-	DNA polymerase	Q775A3	Bordetella_phage	1.4e-267	66.7
WP_040147870.1\|1766602_1768087_-	hypothetical protein	Q38324	Lactococcus_phage	3.5e-31	30.1
WP_040147832.1\|1768195_1768744_-	DUF2815 family protein	Q775A5	Bordetella_phage	7.9e-66	64.8

DBSCAN-SWA_4

2663784 : 2670214

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001620097.1\|2663784_2664873_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|2664959_2665220_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|2665517_2666378_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|2666398_2667160_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_040146162.1\|2667421_2668324_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.5e-159	99.3
WP_040146164.1\|2668335_2669601_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.2e-231	98.8
WP_002210516.1\|2669593_2670214_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

2951554 : 3000541

Klebsiella_phage(28.26%)

tail,integrase,holin,terminase

attL 2955591:2955605|attR 3005606:3005620

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040146350.1\|2951554_2953102_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	3.5e-50	87.0
WP_040146353.1\|2953178_2956247_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.2
2955591:2955605	attL	NA	NA	NA	NA
WP_004152651.1\|2956243_2956624_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_057201003.1\|2956633_2957116_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	5.0e-80	93.8
WP_004152649.1\|2957296_2957761_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-58	67.8
WP_004152648.1\|2958075_2958411_-	hypothetical protein	NA	NA	NA	NA
WP_040146355.1\|2958494_2961383_-\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.5e-99	32.2
WP_077255779.1\|2961456_2961939_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	5.8e-20	51.0
WP_004217333.1\|2961935_2962292_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_077255493.1\|2962368_2962575_-	hypothetical protein	NA	NA	NA	NA
WP_004226994.1\|2962712_2963195_-	hypothetical protein	NA	NA	NA	NA
WP_040146360.1\|2963248_2964421_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|2964444_2964837_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004217343.1\|2964833_2965385_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.3e-28	39.9
WP_004217344.1\|2965386_2965770_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_040146362.1\|2965756_2965990_-	hypothetical protein	A0A1V0E8A3	Vibrio_phage	9.9e-10	49.2
WP_040146365.1\|2965991_2966402_-	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	1.7e-09	39.0
WP_099745202.1\|2966405_2966726_-	hypothetical protein	NA	NA	NA	NA
WP_004184463.1\|2966769_2967906_-	hypothetical protein	G8C7P7	Escherichia_phage	2.8e-158	76.5
WP_012967904.1\|2967993_2968758_-	hypothetical protein	G8C7P6	Escherichia_phage	1.5e-75	59.1
WP_040146369.1\|2968864_2969977_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	5.8e-108	53.6
WP_040146371.1\|2969960_2971385_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.4e-193	71.5
WP_040146373.1\|2971389_2972694_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.7e-146	60.0
WP_040146376.1\|2972671_2973676_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.9e-34	43.3
WP_004184480.1\|2974234_2974480_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-34	97.5
WP_040146378.1\|2975687_2975888_-	hypothetical protein	A0A1L6Z528	Klebsiella_phage	2.9e-18	73.3
WP_040146380.1\|2976265_2976445_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.0e-22	92.7
WP_040146381.1\|2976395_2976671_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	1.4e-07	92.1
WP_040146383.1\|2976667_2977015_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.7e-37	74.8
WP_040146384.1\|2977011_2977551_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	8.2e-100	97.2
WP_024176410.1\|2977547_2977847_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_012967891.1\|2978968_2979595_-	YagU family protein	NA	NA	NA	NA
WP_040146385.1\|2979848_2980664_-	molecular chaperone	A0A286N2Q2	Klebsiella_phage	4.7e-107	73.3
WP_040146387.1\|2980660_2980957_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.2e-36	74.0
WP_040146390.1\|2981165_2981765_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	2.9e-90	79.4
WP_040146392.1\|2981822_2982044_-	hypothetical protein	NA	NA	NA	NA
WP_040146395.1\|2982122_2982356_-	DinI-like family protein	K7PM44	Enterobacteria_phage	8.3e-25	68.8
WP_077255780.1\|2982912_2983671_-	RloB domain-containing protein	NA	NA	NA	NA
WP_040146400.1\|2983621_2984887_-	ATP-binding protein	V9QJ85	Oenococcus_phage	3.9e-07	29.3
WP_040146402.1\|2985332_2985536_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	2.1e-24	81.8
WP_040146404.1\|2985532_2985901_-	DUF977 family protein	H6WRX9	Salmonella_phage	8.3e-11	43.0
WP_039103883.1\|2985908_2986658_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.5e-117	81.5
WP_040146481.1\|2986660_2987500_-	hypothetical protein	Q8HA96	Salmonella_phage	1.4e-24	54.0
WP_040146410.1\|2987565_2988360_-	ParB/RepB/Spo0J family partition protein	C7BGF1	Burkholderia_phage	3.4e-62	50.6
WP_004184526.1\|2988489_2989026_-	hypothetical protein	K7PJT7	Enterobacteria_phage	3.0e-62	70.4
WP_071526640.1\|2989028_2989292_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_048230998.1\|2989388_2989745_+	hypothetical protein	NA	NA	NA	NA
WP_040146412.1\|2990173_2990365_+	DUF1482 family protein	NA	NA	NA	NA
WP_012967861.1\|2990373_2990529_+	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	1.2e-14	75.0
WP_040146414.1\|2990666_2993705_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	8.3e-290	57.4
WP_032436020.1\|2993717_2994719_+	enterohemolysin	H6WRX0	Salmonella_phage	1.1e-118	59.6
WP_040146418.1\|2994753_2995107_+	hypothetical protein	NA	NA	NA	NA
WP_040146420.1\|2995099_2995711_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.8e-39	76.3
WP_040146422.1\|2995707_2996016_+	hypothetical protein	I6PD68	Cronobacter_phage	9.3e-24	55.9
WP_004892750.1\|2996023_2996263_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_004892753.1\|2996483_2997671_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
WP_004151901.1\|2997847_2998738_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|2998737_2999730_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_040146427.1\|2999731_3000541_+	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	2.1e-14	33.2
3005606:3005620	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3111093 : 3199945

Klebsiella_phage(42.22%)

tail,portal,capsid,terminase,head,transposase,integrase,tRNA

attL 3137908:3137922|attR 3197756:3197770

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|3111093_3111594_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3111710_3112157_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3112140_3112932_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004148041.1\|3113033_3114218_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3114249_3114942_-	CTP synthase	NA	NA	NA	NA
WP_004190885.1\|3115087_3115597_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3115583_3115940_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004179368.1\|3115929_3116169_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_040147651.1\|3116469_3117483_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.9e-12	33.8
WP_004150782.1\|3117540_3117642_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3117641_3117716_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3117833_3117959_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3118018_3118282_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3118412_3119051_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3119140_3120055_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|3120716_3121760_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|3122062_3123271_+	HD domain-containing protein	NA	NA	NA	NA
WP_019705575.1\|3123344_3125129_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3125135_3126026_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3126146_3127655_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3127965_3128652_-	EAL domain-containing protein	NA	NA	NA	NA
WP_153236426.1\|3129101_3129290_+	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3129268_3129901_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3130467_3130665_+	hypothetical protein	NA	NA	NA	NA
WP_004183659.1\|3130779_3131790_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3131786_3133193_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3133248_3134136_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3134152_3134659_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3134685_3135180_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3135270_3135456_-	general stress protein	NA	NA	NA	NA
WP_004176552.1\|3136078_3137272_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3137384_3137612_+	DUF1272 domain-containing protein	NA	NA	NA	NA
3137908:3137922	attL	NA	NA	NA	NA
WP_004150797.1\|3138061_3138385_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3138377_3138770_+	amino acid-binding protein	NA	NA	NA	NA
WP_040147647.1\|3138766_3139480_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3139752_3139905_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_049115092.1\|3140554_3141247_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032430712.1\|3141602_3142661_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.1e-14	31.1
WP_099743305.1\|3143083_3144508_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.3e-96	54.0
WP_099743307.1\|3144570_3157278_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.7
WP_057201155.1\|3157340_3157934_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.3e-79	76.6
WP_099745203.1\|3157960_3158404_-	hypothetical protein	J9Q806	Salmonella_phage	1.8e-28	47.9
WP_000082736.1\|3158516_3159497_-\|transposase	IS5-like element ISEc68 family transposase	Q38213	Escherichia_phage	1.4e-153	80.9
WP_025368257.1\|3159625_3160336_-	peptidase P60	Q6UAW4	Klebsiella_phage	8.5e-137	90.7
WP_017899000.1\|3160337_3161093_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.9
WP_017898999.1\|3161089_3161428_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_040153917.1\|3161427_3164784_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.3
WP_014228914.1\|3165016_3165382_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3165439_3165901_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_017898997.1\|3165932_3166334_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_017880258.1\|3166330_3166720_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_014228910.1\|3166700_3167039_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_023316689.1\|3167035_3167353_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.6e-45	89.8
WP_014907814.1\|3167333_3167594_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_017898995.1\|3167652_3168939_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.0e-216	89.5
WP_017898994.1\|3169016_3169937_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	4.8e-148	87.9
WP_025368259.1\|3169973_3171233_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	9.5e-224	90.5
WP_017898992.1\|3171232_3171412_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_012542167.1\|3171405_3173127_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
WP_012542168.1\|3173126_3173561_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_023316687.1\|3173809_3174241_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.1e-41	62.7
WP_064793022.1\|3174237_3174561_-	hypothetical protein	NA	NA	NA	NA
WP_032440987.1\|3174512_3174875_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	5.2e-58	83.3
WP_032440986.1\|3175036_3175258_-	hypothetical protein	NA	NA	NA	NA
WP_017898986.1\|3176635_3176986_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
WP_032439908.1\|3176982_3177480_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	9.0e-77	82.7
WP_023289178.1\|3177457_3177727_-	hypothetical protein	K7P6H9	Enterobacteria_phage	4.2e-36	85.9
WP_077264777.1\|3178741_3179185_+	hypothetical protein	NA	NA	NA	NA
WP_032440985.1\|3179186_3180056_+	hypothetical protein	NA	NA	NA	NA
WP_023316683.1\|3180084_3180429_-	hypothetical protein	A0A0P0ZCW0	Stx2-converting_phage	1.8e-55	85.0
WP_023316682.1\|3180441_3181473_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	1.2e-96	49.6
WP_099743309.1\|3181672_3182065_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_099743311.1\|3182105_3182396_-	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_048297249.1\|3182407_3182641_-	DinI family protein	K7PM44	Enterobacteria_phage	2.6e-26	73.7
WP_099743354.1\|3183781_3184687_-	hypothetical protein	NA	NA	NA	NA
WP_099743312.1\|3184710_3185313_-	hypothetical protein	NA	NA	NA	NA
WP_099743314.1\|3185323_3186085_-	TIGR04255 family protein	NA	NA	NA	NA
WP_099743316.1\|3186293_3186641_-	hypothetical protein	NA	NA	NA	NA
WP_099743317.1\|3186637_3187285_-	morphogenetic protein	M1F3E2	Salmonella_phage	5.7e-63	54.6
WP_072383098.1\|3187277_3187622_-	hypothetical protein	NA	NA	NA	NA
WP_032709977.1\|3187624_3187876_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_099743319.1\|3187925_3188390_-	replication protein	A0A0U2JGJ0	Escherichia_phage	5.3e-63	71.5
WP_077273825.1\|3188382_3189387_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	2.1e-32	40.9
WP_094354843.1\|3189446_3190001_-	hypothetical protein	NA	NA	NA	NA
WP_071561166.1\|3190003_3190228_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_099743321.1\|3190317_3190746_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.2e-37	58.0
WP_040234937.1\|3191075_3191390_-	hypothetical protein	NA	NA	NA	NA
WP_032735208.1\|3191780_3191975_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3192017_3192362_+	transcriptional regulator	NA	NA	NA	NA
WP_099743322.1\|3192503_3194642_+	exonuclease	S4TNL0	Salmonella_phage	3.3e-99	42.3
WP_012542206.1\|3194694_3194940_+	excisionase	NA	NA	NA	NA
WP_017898966.1\|3194920_3196048_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	3.3e-119	58.4
WP_004150800.1\|3196165_3197416_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_040147613.1\|3197656_3198307_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3197756:3197770	attR	NA	NA	NA	NA
WP_040147612.1\|3198323_3198782_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3198838_3199945_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_7

3444698 : 3454172

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3444698_3446420_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3446464_3447166_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3447519_3447738_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3447868_3450148_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3450178_3450496_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3450821_3451043_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3451119_3453060_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3453056_3454172_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024497

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024496

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection