CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP024547	Klebsiella pneumoniae strain INF059 plasmid unnamed2, complete sequence	0 crisprs	NA	2
NZ_CP024546	Klebsiella pneumoniae strain INF059 plasmid unnamed1, complete sequence	0 crisprs	NA	1
NZ_CP024545	Klebsiella pneumoniae strain INF059 chromosome, complete genome	0 crisprs	csa3,cas3,DEDDh,DinG,WYL,RT	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4707 : 11421

Stx2-converting_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080892630.1\|4707_5112_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.4e-67	97.0
WP_000612626.1\|5108_5456_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_022644883.1\|5504_7043_+\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-281	94.7
WP_020804876.1\|7153_7765_+	DUF2913 family protein	NA	NA	NA	NA
WP_020314639.1\|7761_8715_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	9.5e-75	57.1
WP_022644719.1\|8835_9102_-	hypothetical protein	NA	NA	NA	NA
WP_020314642.1\|9121_9742_-	recombinase family protein	A0A219Y912	Aeromonas_phage	1.0e-08	31.0
WP_020804882.1\|10779_11421_+	ParA family protein	A4JWV7	Burkholderia_virus	1.1e-05	25.5

DBSCAN-SWA_2

14629 : 23027

Faecalibacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099729075.1\|14629_15331_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	1.2e-21	34.1
WP_032743907.1\|15330_15552_+	hypothetical protein	NA	NA	NA	NA
WP_099729076.1\|15597_16008_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_020804421.1\|16054_16819_+	hypothetical protein	NA	NA	NA	NA
WP_064181679.1\|17250_17679_+	antirestriction protein	A9J566	Pseudomonas_phage	2.8e-10	31.9
WP_099729085.1\|17723_18230_+	antirestriction protein	G9FHQ1	Rhodococcus_virus	5.3e-08	31.9
WP_020803881.1\|18270_18462_+	hypothetical protein	NA	NA	NA	NA
WP_039698518.1\|18662_18926_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.4e-14	53.8
WP_064174028.1\|18950_19271_+	hypothetical protein	NA	NA	NA	NA
WP_039698514.1\|20100_20658_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	5.2e-49	75.2
WP_020804458.1\|20707_20956_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_099729078.1\|21026_23027_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	8.8e-22	26.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43520 : 52314

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060579413.1\|43520_44276_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	2.9e-135	95.2
WP_000368714.1\|45041_46247_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_087597452.1\|46243_47221_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.5
WP_099729065.1\|47302_48574_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.2e-150	63.3
WP_048993623.1\|48573_49005_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_001568038.1\|49238_50210_+	hypothetical protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_040213126.1\|50212_50884_+	Mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|50945_51176_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|51612_52314_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP024545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1173874 : 1180870

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157665542.1\|1173874_1174084_-	hypothetical protein	Q7M2A8	Enterobacteria_phage	1.3e-21	87.3
WP_023278769.1\|1174280_1174625_-	hypothetical protein	Q7M2A8	Enterobacteria_phage	5.3e-44	73.7
WP_004899969.1\|1174716_1175181_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.7e-40	63.2
WP_023278770.1\|1175504_1176566_+	hypothetical protein	A0A2I7RNF6	Vibrio_phage	4.6e-54	38.8
WP_004899960.1\|1176613_1178572_-	NACHT domain-containing protein	X5JAK5	Clostridium_phage	1.6e-76	33.5
WP_002914164.1\|1180387_1180870_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4

DBSCAN-SWA_2

1404680 : 1448025

Cronobacter_phage(28.57%)

lysis,coat,head,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002913370.1\|1404680_1405139_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	1.2e-11	32.3
WP_002913369.1\|1405271_1406180_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	7.8e-10	24.2
WP_023158760.1\|1406189_1407071_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_002913367.1\|1407438_1407921_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_023301637.1\|1408257_1408458_-	transcriptional regulator	K7P7V0	Enterobacteria_phage	3.7e-29	86.4
WP_099728882.1\|1408454_1408691_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	9.4e-08	51.9
WP_099728883.1\|1408687_1409377_-	morphogenetic protein	H2BDG4	Pseudomonas_virus	1.4e-51	50.0
WP_099728884.1\|1409587_1410244_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	88.0
WP_099728885.1\|1410240_1410669_-	regulator	M9NYX4	Enterobacteria_phage	1.1e-62	78.9
WP_004151306.1\|1410665_1411346_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_099728886.1\|1411342_1412188_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
WP_064185842.1\|1412203_1412488_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.0e-29	62.8
WP_008807814.1\|1412568_1412775_-	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_099728887.1\|1412767_1412956_-	hypothetical protein	NA	NA	NA	NA
WP_099728888.1\|1413202_1413406_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	2.7e-19	71.6
WP_071570777.1\|1413602_1413938_-	hypothetical protein	NA	NA	NA	NA
WP_004178801.1\|1414242_1414362_-	hypothetical protein	NA	NA	NA	NA
WP_024622727.1\|1414384_1415074_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_004178811.1\|1415178_1415412_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_087778955.1\|1415451_1415772_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.1e-35	67.9
WP_099728889.1\|1415858_1416656_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	5.7e-89	71.1
WP_099729049.1\|1416715_1417681_+	replication protein	K7PGZ0	Enterobacteria_phage	5.9e-64	77.3
WP_019704107.1\|1417677_1418415_+	Replication protein 14	A0A0K2FIT1	Enterobacteria_phage	3.1e-65	55.6
WP_099728890.1\|1418411_1418714_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_099728891.1\|1418710_1419121_+	hypothetical protein	R9TME7	Aeromonas_phage	5.1e-25	53.1
WP_099728892.1\|1419117_1419600_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	3.2e-71	80.6
WP_099728893.1\|1420371_1420917_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	1.9e-59	68.3
WP_123297955.1\|1421072_1421618_+	hypothetical protein	NA	NA	NA	NA
WP_099728894.1\|1421699_1421957_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	4.9e-26	70.0
WP_099728895.1\|1422063_1422660_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-56	54.3
WP_032413853.1\|1422665_1422836_+	NinE family protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
WP_004151286.1\|1422828_1423464_+	protein ninG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_023283343.1\|1423460_1423601_+	YlcG family protein	NA	NA	NA	NA
WP_063417047.1\|1423600_1424290_+	antiterminator	I6PDF8	Cronobacter_phage	1.2e-55	53.6
WP_004146526.1\|1425034_1425283_+	hypothetical protein	NA	NA	NA	NA
WP_023341861.1\|1425285_1425816_+	lysozyme	K7PLY1	Enterobacteria_phage	9.3e-80	79.4
WP_023342728.1\|1425812_1426274_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	3.2e-44	63.4
WP_074184070.1\|1426397_1426754_+	hypothetical protein	NA	NA	NA	NA
WP_032428158.1\|1427278_1427614_-	hypothetical protein	NA	NA	NA	NA
WP_064146435.1\|1427641_1428157_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	3.3e-66	75.3
WP_099728896.1\|1428156_1429629_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	2.9e-248	82.3
WP_099728897.1\|1429641_1431105_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.6e-148	56.1
WP_099728898.1\|1431037_1432033_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	3.0e-116	70.1
WP_117270308.1\|1432121_1432427_+	hypothetical protein	NA	NA	NA	NA
WP_099728899.1\|1432477_1433863_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.2e-166	64.2
WP_012967726.1\|1433866_1434298_+	hypothetical protein	F1C5E0	Cronobacter_phage	6.2e-42	60.8
WP_099728900.1\|1434309_1435407_+\|coat	phage coat protein	F1C5E1	Cronobacter_phage	3.6e-150	73.0
WP_099728901.1\|1435416_1435701_+	hypothetical protein	NA	NA	NA	NA
WP_042937269.1\|1435703_1436084_+	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	54.5
WP_048336937.1\|1436083_1436257_+	hypothetical protein	I6R0P9	Salmonella_phage	4.1e-13	54.4
WP_016528891.1\|1436256_1436619_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	2.5e-20	49.2
WP_099728902.1\|1436621_1436990_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.1e-47	82.0
WP_099728903.1\|1436986_1437370_+	hypothetical protein	NA	NA	NA	NA
WP_099728904.1\|1437428_1438193_+	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	3.9e-39	42.6
WP_099728905.1\|1438260_1438953_+	hypothetical protein	G0ZNE7	Cronobacter_phage	2.7e-63	54.2
WP_087847127.1\|1439003_1439387_-	hypothetical protein	NA	NA	NA	NA
WP_087847160.1\|1439621_1439981_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	4.1e-15	41.7
WP_099728906.1\|1440232_1440574_+	hypothetical protein	NA	NA	NA	NA
WP_040181307.1\|1440625_1440964_+	hypothetical protein	H6WRV3	Salmonella_phage	1.0e-31	57.3
WP_099728907.1\|1441019_1441490_+	hypothetical protein	NA	NA	NA	NA
WP_099728908.1\|1441581_1444179_+\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	2.5e-93	39.3
WP_064144792.1\|1444222_1444699_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	6.7e-37	48.4
WP_099728909.1\|1444698_1445169_+	hypothetical protein	R9TPR6	Aeromonas_phage	2.8e-27	39.7
WP_080935608.1\|1445165_1445561_+	hypothetical protein	F1C5F2	Cronobacter_phage	1.2e-36	56.3
WP_099728910.1\|1445547_1448025_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.1e-196	45.2

DBSCAN-SWA_3

1676738 : 1683643

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023278799.1\|1676738_1677602_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004899467.1\|1677612_1678386_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_099729051.1\|1678626_1679520_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	9.4e-16	28.3
WP_004144192.1\|1679765_1681127_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1681445_1682168_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_019705218.1\|1682164_1683643_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_4

1727421 : 1742683

Hokovirus(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043543.1\|1727421_1728828_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004180506.1\|1729069_1730485_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_023288453.1\|1730507_1731878_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	26.0
WP_023278824.1\|1732034_1733099_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.5e-105	55.0
WP_023278825.1\|1733125_1733995_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-110	66.7
WP_004189149.1\|1734026_1734917_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_023278826.1\|1734931_1735486_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.5e-51	57.6
WP_023278827.1\|1735666_1736833_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	5.3e-112	54.7
WP_004144151.1\|1737256_1737379_-	small membrane protein	NA	NA	NA	NA
WP_004184806.1\|1737779_1738784_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5
WP_004180506.1\|1739862_1741278_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_012967600.1\|1741300_1742683_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	4.2e-31	25.8

DBSCAN-SWA_5

1844056 : 1897153

Salmonella_phage(19.05%)

capsid,protease,integrase,head,tail,holin,portal,terminase,transposase

attL 1862572:1862631|attR 1903649:1903712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099728927.1\|1844056_1845319_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	4.3e-75	39.8
WP_004151469.1\|1845748_1847185_+	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA
WP_004148975.1\|1847550_1849005_-	AMP nucleosidase	NA	NA	NA	NA
WP_004141189.1\|1849134_1849380_-	signal transduction protein PmrD	NA	NA	NA	NA
WP_023278836.1\|1849652_1851275_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_020723560.1\|1851185_1852118_-	nucleoside recognition family protein	NA	NA	NA	NA
WP_023278837.1\|1852238_1853216_-	oxidoreductase	NA	NA	NA	NA
WP_004175384.1\|1853212_1853917_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_009484423.1\|1854508_1856143_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_099728928.1\|1856642_1857560_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_004180456.1\|1857666_1858617_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_009484426.1\|1858695_1859637_+	L,D-transpeptidase	NA	NA	NA	NA
WP_099728929.1\|1859786_1860071_-	hypothetical protein	NA	NA	NA	NA
WP_009484428.1\|1860371_1861067_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002911599.1\|1861652_1862450_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
1862572:1862631	attL	NA	NA	NA	NA
WP_099728930.1\|1862745_1863738_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	6.4e-175	87.2
WP_004184757.1\|1863739_1863967_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	1.1e-29	78.4
WP_099728932.1\|1864274_1865258_-	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.2e-50	43.0
WP_099728933.1\|1865254_1865542_-	hypothetical protein	A0A077KAZ4	Edwardsiella_phage	1.4e-29	72.5
WP_099728935.1\|1865807_1866122_-	hypothetical protein	NA	NA	NA	NA
WP_099728936.1\|1866122_1866788_-	hypothetical protein	NA	NA	NA	NA
WP_099728937.1\|1867199_1867985_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.5e-62	52.1
WP_099728938.1\|1867984_1868284_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.7e-14	47.8
WP_099728939.1\|1868371_1869289_-	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	1.8e-46	36.9
WP_000690183.1\|1869833_1870529_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	2.7e-87	71.3
WP_001191665.1\|1870626_1870869_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_004213338.1\|1870903_1871365_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_001208720.1\|1871602_1871782_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_024176409.1\|1871771_1872725_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.7e-103	75.5
WP_099728940.1\|1872721_1873531_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	6.5e-109	68.9
WP_087760093.1\|1873540_1873918_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.8e-48	73.6
WP_099728941.1\|1873930_1874911_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.1e-133	68.1
WP_099728942.1\|1874925_1875288_+	antitermination protein Q	K7PGW2	Enterobacterial_phage	2.1e-59	94.2
WP_099728943.1\|1875311_1875755_-	hypothetical protein	A5LH78	Enterobacteria_phage	4.6e-48	70.1
WP_099729052.1\|1875758_1876472_-	hypothetical protein	A5LH79	Enterobacteria_phage	1.3e-121	90.3
WP_040186322.1\|1877011_1877359_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.5e-38	72.0
WP_040186325.1\|1877361_1877901_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.1e-101	98.9
WP_048264668.1\|1877897_1878239_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	7.6e-35	70.8
WP_048325281.1\|1878241_1878517_+	hypothetical protein	NA	NA	NA	NA
WP_072060439.1\|1878897_1879248_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	8.6e-50	77.6
WP_001119413.1\|1879406_1879904_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.4e-63	71.3
WP_004206689.1\|1879907_1881659_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	5.2e-252	72.2
WP_000923127.1\|1881806_1883033_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	2.5e-208	85.3
WP_000999827.1\|1883025_1883625_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
WP_070585623.1\|1883634_1884873_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	7.1e-155	67.7
WP_019705272.1\|1884951_1885269_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	7.4e-24	52.9
WP_019705271.1\|1885277_1885616_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	68.8
WP_019705270.1\|1885612_1886062_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
WP_087851069.1\|1886058_1886406_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_047671839.1\|1886462_1887167_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	1.9e-80	66.5
WP_040204832.1\|1887197_1887602_+\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	5.0e-33	56.2
WP_099728944.1\|1887604_1887910_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	3.3e-29	67.7
WP_016530182.1\|1887983_1888217_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_032442165.1\|1888358_1889282_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	4.9e-177	99.7
WP_099729053.1\|1889342_1892729_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	8.1e-294	56.5
WP_004884312.1\|1892749_1893223_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.1e-55	62.7
WP_004864228.1\|1893209_1893686_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
WP_032408661.1\|1893698_1894079_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	5.3e-61	84.1
WP_099728945.1\|1894075_1897153_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.4
1903649:1903712	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2783591 : 2794478

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004190234.1\|2783591_2786699_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
WP_004176258.1\|2786753_2788019_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2788049_2789138_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|2789224_2789485_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_004176269.1\|2789782_2790643_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2790663_2791425_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2791685_2792588_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_023288424.1\|2792599_2793865_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	5.1e-233	99.3
WP_002210516.1\|2793857_2794478_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3183348 : 3277975

100

Klebsiella_phage(34.15%)

capsid,lysis,tRNA,integrase,head,tail,portal,terminase,transposase

attL 3175878:3175895|attR 3286007:3286024

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3175878:3175895	attL	NA	NA	NA	NA
WP_002901088.1\|3183348_3183849_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3183965_3184412_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3184395_3185187_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004190880.1\|3185288_3186473_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3186504_3187197_-	CTP synthase	NA	NA	NA	NA
WP_004190885.1\|3187342_3187852_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_023279122.1\|3187838_3188195_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004190888.1\|3188184_3188424_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004176549.1\|3188724_3189738_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|3189795_3189897_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3189896_3189971_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3190088_3190214_+	hypothetical protein	NA	NA	NA	NA
WP_004190891.1\|3190273_3190537_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3190667_3191306_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3191395_3192310_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|3192971_3194015_-	type II asparaginase	NA	NA	NA	NA
WP_004190896.1\|3194317_3195526_+	HD domain-containing protein	NA	NA	NA	NA
WP_004190899.1\|3195598_3197383_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3197389_3198280_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3198400_3199909_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3200219_3200906_-	EAL domain-containing protein	NA	NA	NA	NA
WP_153831089.1\|3201356_3201536_+	hypothetical protein	NA	NA	NA	NA
WP_004190902.1\|3201514_3202147_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3202713_3202911_+	hypothetical protein	NA	NA	NA	NA
WP_004183659.1\|3203026_3204037_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3204033_3205440_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|3205495_3206383_-	manganese catalase family protein	NA	NA	NA	NA
WP_004190904.1\|3206399_3206906_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3206932_3207427_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3207517_3207703_-	general stress protein	NA	NA	NA	NA
WP_004190907.1\|3207922_3208258_+	hypothetical protein	NA	NA	NA	NA
WP_004190910.1\|3208325_3209519_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3209631_3209859_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004150797.1\|3210308_3210632_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004190914.1\|3210624_3211017_+	hypothetical protein	NA	NA	NA	NA
WP_004190918.1\|3211013_3211727_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3211999_3212152_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_099728994.1\|3212801_3213494_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032430712.1\|3213849_3214908_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.1e-14	31.1
WP_099728995.1\|3215330_3216755_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	3.8e-96	48.7
WP_099728996.1\|3216816_3229407_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	41.5
WP_099729057.1\|3229464_3230040_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.1e-49	57.0
WP_012542161.1\|3230053_3230761_-	peptidase P60	A0A2H4J1J7	uncultured_Caudovirales_phage	1.3e-60	45.4
WP_032735256.1\|3230763_3231513_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	5.7e-83	56.8
WP_016160681.1\|3231605_3231965_-	hypothetical protein	NA	NA	NA	NA
WP_016160680.1\|3231977_3232328_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.6e-22	41.8
WP_099728997.1\|3232327_3235324_-\|tail	phage tail tape measure protein	A0A2H4J7J3	uncultured_Caudovirales_phage	5.7e-33	25.8
WP_016160678.1\|3235552_3235897_-	hypothetical protein	NA	NA	NA	NA
WP_016160677.1\|3235911_3236391_-	hypothetical protein	NA	NA	NA	NA
WP_016160676.1\|3236411_3236825_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	2.0e-37	59.3
WP_016160675.1\|3236829_3237210_-	hypothetical protein	Q6UAX2	Klebsiella_phage	1.4e-40	68.6
WP_014228910.1\|3237190_3237529_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_016160674.1\|3237525_3237843_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.0e-45	88.8
WP_016160673.1\|3237823_3238084_-	hypothetical protein	Q6UAX5	Klebsiella_phage	9.6e-22	60.5
WP_099728998.1\|3238142_3239429_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.6e-216	89.0
WP_016160672.1\|3239506_3240427_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	87.9
WP_012542166.1\|3240463_3241723_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.8e-223	90.2
WP_017898992.1\|3241722_3241902_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_099728999.1\|3241895_3243617_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	3.6e-189	57.0
WP_012542168.1\|3243616_3244051_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014907818.1\|3244298_3244730_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_023289183.1\|3244726_3245050_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3245001_3245364_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_032749552.1\|3245690_3245915_+	hypothetical protein	NA	NA	NA	NA
WP_065888617.1\|3245953_3246391_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3247329_3247680_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_023317653.1\|3247676_3248174_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.7e-78	85.2
WP_016160648.1\|3248173_3248389_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_128316005.1\|3249046_3249250_+	hypothetical protein	NA	NA	NA	NA
WP_060657012.1\|3249493_3250096_-	hypothetical protein	H9C175	Pectobacterium_phage	8.4e-77	68.6
WP_099729000.1\|3250112_3251144_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.8e-96	49.6
WP_094315826.1\|3251343_3251736_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	3.6e-12	36.6
WP_077253879.1\|3251776_3252067_-	hypothetical protein	H6WRY6	Salmonella_phage	6.1e-17	56.9
WP_023279529.1\|3252078_3252312_-	DinI family protein	K7PM44	Enterobacteria_phage	1.3e-25	72.4
WP_099729001.1\|3252592_3254329_-	hypothetical protein	NA	NA	NA	NA
WP_099729002.1\|3254561_3255455_-	hypothetical protein	NA	NA	NA	NA
WP_023279533.1\|3256090_3256990_-	hypothetical protein	NA	NA	NA	NA
WP_023279534.1\|3258125_3258566_-	hypothetical protein	NA	NA	NA	NA
WP_099729003.1\|3258579_3259044_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.3e-61	69.5
WP_099729004.1\|3259036_3260020_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	7.3e-46	55.8
WP_014907826.1\|3260071_3260626_-	hypothetical protein	NA	NA	NA	NA
WP_046879032.1\|3260628_3260844_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	1.2e-17	58.9
WP_012542200.1\|3260945_3261335_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_099729005.1\|3262177_3262372_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3262414_3262759_+	transcriptional regulator	NA	NA	NA	NA
WP_099729006.1\|3262900_3265039_+	exonuclease	S4TNL0	Salmonella_phage	1.9e-99	42.9
WP_012542206.1\|3265091_3265337_+	excisionase	NA	NA	NA	NA
WP_099729007.1\|3265317_3266445_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.8e-118	58.1
WP_004150800.1\|3266562_3267813_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3268053_3268704_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150802.1\|3268720_3269179_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004190921.1\|3269235_3270342_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004190923.1\|3270396_3271038_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_004190926.1\|3271041_3272412_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.7e-107	45.1
WP_023279125.1\|3272466_3272829_-	cupin domain-containing protein	NA	NA	NA	NA
WP_004179353.1\|3272912_3273719_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004150807.1\|3274001_3274673_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_004147969.1\|3274672_3276139_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_004190935.1\|3276224_3277346_+	cupin domain-containing protein	NA	NA	NA	NA
WP_004190938.1\|3277483_3277975_-\|transposase	transposase	NA	NA	NA	NA
3286007:3286024	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3510058 : 3519520

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004191145.1\|3510058_3511780_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	34.3
WP_002898014.1\|3511824_3512526_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3512879_3513098_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3513216_3515496_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3515526_3515844_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3516169_3516391_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004191149.1\|3516467_3518408_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.5e-37	40.5
WP_004191152.1\|3518404_3519520_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP024545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection