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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024600 Porphyromonas gingivalis strain KCOM 2801 chromosome, complete genome 4 crisprs cas4,cas7,cas8b6,cas3,cas5,cas6,DEDDh,RT,cas13b,Csx28,PD-DExK 1 5 2 4

Results visualization

1. NZ_CP024600
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024600_1 322213-323296 Unclear NA
16 spacers
cas2,cas4,cas7,cas8b6,cas3,cas5,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024600_2 714951-715316 TypeVI-B1,TypeVI-B2 VI-B2
5 spacers
Csx28,cas13b

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024600_3 1497910-1497988 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024600_4 1893600-1893698 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP024600_4 4.1|1893632|35|NZ_CP024600|CRISPRCasFinder 1893632-1893666 35 NZ_CP024600.1 543034-543068 0 1.0
NZ_CP024600_4 4.1|1893632|35|NZ_CP024600|CRISPRCasFinder 1893632-1893666 35 NZ_CP024600.1 1052973-1053007 0 1.0

1. spacer 4.1|1893632|35|NZ_CP024600|CRISPRCasFinder matches to position: 543034-543068, mismatch: 0, identity: 1.0

gattgtggaatggttatgggaagtggtattcacag	CRISPR spacer
gattgtggaatggttatgggaagtggtattcacag	Protospacer
***********************************

2. spacer 4.1|1893632|35|NZ_CP024600|CRISPRCasFinder matches to position: 1052973-1053007, mismatch: 0, identity: 1.0

gattgtggaatggttatgggaagtggtattcacag	CRISPR spacer
gattgtggaatggttatgggaagtggtattcacag	Protospacer
***********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024600_2 2.1|714987|30|NZ_CP024600|PILER-CR,CRISPRCasFinder,CRT 714987-715016 30 MN856025 Bacteriophage sp. isolate 180, complete genome 3588-3617 6 0.8
NZ_CP024600_3 3.1|1497935|29|NZ_CP024600|CRISPRCasFinder 1497935-1497963 29 NZ_CP019707 Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence 65222-65250 7 0.759
NZ_CP024600_1 1.3|322376|36|NZ_CP024600|CRISPRCasFinder,CRT 322376-322411 36 NC_015710 Simkania negevensis Z plasmid pSn, complete sequence 89741-89776 8 0.778
NZ_CP024600_1 1.19|322376|37|NZ_CP024600|PILER-CR 322376-322412 37 NC_015710 Simkania negevensis Z plasmid pSn, complete sequence 89741-89777 9 0.757
NZ_CP024600_2 2.3|715119|30|NZ_CP024600|PILER-CR,CRISPRCasFinder,CRT 715119-715148 30 MN871444 UNVERIFIED: Serratia phage KpGz_1, complete genome 263812-263841 9 0.7

1. spacer 2.1|714987|30|NZ_CP024600|PILER-CR,CRISPRCasFinder,CRT matches to MN856025 (Bacteriophage sp. isolate 180, complete genome) position: , mismatch: 6, identity: 0.8

tttctttttagttgccataacggacaaatt	CRISPR spacer
ttcaattttagttgccataacgcaccaata	Protospacer
**.  ***************** ** *** 

2. spacer 3.1|1497935|29|NZ_CP024600|CRISPRCasFinder matches to NZ_CP019707 (Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence) position: , mismatch: 7, identity: 0.759

gcggaaagaaggatcctgttcttcctgcc	CRISPR spacer
cgggaaagaaagatccggttcttcctttt	Protospacer
  ********.***** ********* ..

3. spacer 1.3|322376|36|NZ_CP024600|CRISPRCasFinder,CRT matches to NC_015710 (Simkania negevensis Z plasmid pSn, complete sequence) position: , mismatch: 8, identity: 0.778

tgcccgacttattcaaattctttactgaaaaagata	CRISPR spacer
cccccaaaaaattccaattctttactgaagaagata	Protospacer
. ***.*   **** **************.******

4. spacer 1.19|322376|37|NZ_CP024600|PILER-CR matches to NC_015710 (Simkania negevensis Z plasmid pSn, complete sequence) position: , mismatch: 9, identity: 0.757

tgcccgacttattcaaattctttactgaaaaagatag	CRISPR spacer
cccccaaaaaattccaattctttactgaagaagataa	Protospacer
. ***.*   **** **************.******.

5. spacer 2.3|715119|30|NZ_CP024600|PILER-CR,CRISPRCasFinder,CRT matches to MN871444 (UNVERIFIED: Serratia phage KpGz_1, complete genome) position: , mismatch: 9, identity: 0.7

ttctttgtttatcaccctcacggagttggc	CRISPR spacer
aaaagcgtttatcaccctgacggatttggg	Protospacer
     .************ ***** **** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1826383 : 1895088 60 Ralstonia_phage(21.43%) integrase,transposase,tRNA attL 1888105:1888164|attR 1893528:1894599
DBSCAN-SWA_2 1968733 : 2040699 52 Ralstonia_phage(30.0%) integrase,transposase,protease attL 1985071:1985086|attR 2019845:2019860
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP024600.1|WP_004584358.1|545025_545439_-|PcfK-like-protein 545025_545439_- 137 aa aa 40 NA NA No NA
NZ_CP024600.1|WP_004584358.1|1050600_1051014_+|PcfK-like-protein 1050600_1051014_+ 137 aa aa 40 NA NA No NA
NZ_CP024600.1|WP_039417454.1|1256702_1257125_+|PcfK-like-protein 1256702_1257125_+ 140 aa aa 40 NA NA No NA
NZ_CP024600.1|WP_099809390.1|1454706_1455123_-|PcfK-like-protein 1454706_1455123_- 138 aa aa 40 NA NA No NA