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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024478 Pseudomonas sp. HLS-6 chromosome, complete genome 5 crisprs csa3,DEDDh,WYL,cas3,RT,DinG,TnsE_C 3 0 7 0

Results visualization

1. NZ_CP024478
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024478_1 1712449-1712695 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024478_2 3088462-3088852 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024478_3 3851438-3851545 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024478_4 4818613-4818863 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024478_5 4866325-4866462 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP024478_1 1.1|1712494|56|NZ_CP024478|PILER-CR 1712494-1712549 56 NZ_CP024478.1 1721176-1721231 1 0.982
NZ_CP024478_1 1.1|1712494|56|NZ_CP024478|PILER-CR 1712494-1712549 56 NZ_CP024478.1 1721880-1721935 1 0.982
NZ_CP024478_2 2.2|3088629|57|NZ_CP024478|PILER-CR 3088629-3088685 57 NZ_CP024478.1 3088068-3088124 1 0.982
NZ_CP024478_4 4.1|4818663|51|NZ_CP024478|PILER-CR 4818663-4818713 51 NZ_CP024478.1 1908435-1908485 2 0.961

1. spacer 1.1|1712494|56|NZ_CP024478|PILER-CR matches to position: 1721176-1721231, mismatch: 1, identity: 0.982

cgccagcctgtaggagccgggcttgcccgcgatgcaggcaccacgaactcactggc	CRISPR spacer
cgccagcctgtaggagccgggcttgcccgcgatgcaggcaccacgcactcactggc	Protospacer
********************************************* **********

2. spacer 1.1|1712494|56|NZ_CP024478|PILER-CR matches to position: 1721880-1721935, mismatch: 1, identity: 0.982

cgccagcctgtaggagccgggcttgcccgcgatgcaggcaccacgaactcactggc	CRISPR spacer
cgccagcctgtaggagccgggcttgcccgcgatgcaggcaccacgcactcactggc	Protospacer
********************************************* **********

3. spacer 2.2|3088629|57|NZ_CP024478|PILER-CR matches to position: 3088068-3088124, mismatch: 1, identity: 0.982

gaatacgcggcgcttgcatcgcgggcaagcccggctcctacagggatctgcgcaggg	CRISPR spacer
gaatacgcggcgcctgcatcgcgggcaagcccggctcctacagggatctgcgcaggg	Protospacer
*************.*******************************************

4. spacer 4.1|4818663|51|NZ_CP024478|PILER-CR matches to position: 1908435-1908485, mismatch: 2, identity: 0.961

caatgcgttcgcggtgtctgcatcgcgggcaagcccggctcctacaggctg	CRISPR spacer
cagtgggttcgcggtgtctgcatcgcgggcaagcccggctcctacaggctg	Protospacer
**.** *********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1272613 : 1371634 102 Pseudomonas_phage(26.92%) head,integrase,terminase,tRNA,tail,plate,capsid,holin,portal,lysis,protease attL 1304184:1304202|attR 1341104:1341122
DBSCAN-SWA_2 1984919 : 2105039 131 Pseudomonas_phage(42.86%) integrase,terminase,tail,transposase,lysis,protease attL 2039486:2039530|attR 2077965:2078009
DBSCAN-SWA_3 2246344 : 2362455 139 uncultured_Caudovirales_phage(38.95%) head,integrase,terminase,tail,plate,capsid,holin,portal,transposase,lysis,protease attL 2317934:2317993|attR 2364018:2364114
DBSCAN-SWA_4 3239889 : 3314692 93 uncultured_Caudovirales_phage(54.39%) head,integrase,terminase,tail,tRNA,protease,plate,holin,portal,transposase,lysis,capsid attL 3279383:3279398|attR 3304674:3304689
DBSCAN-SWA_5 3452442 : 3493616 52 uncultured_Caudovirales_phage(69.44%) head,integrase,terminase,tail,holin,lysis,protease attL 3458083:3458099|attR 3493780:3493796
DBSCAN-SWA_6 4852004 : 4904174 65 Pseudomonas_phage(65.62%) head,integrase,terminase,tail,plate,holin,portal,capsid attL 4873123:4873173|attR 4904270:4904320
DBSCAN-SWA_7 5204362 : 5241840 32 Bacillus_phage(20.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage