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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024594 Porphyromonas gingivalis strain KCOM 2805 chromosome, complete genome 8 crisprs DEDDh,RT,PD-DExK,Csx28,cas13b,cas3,cas6,cas5,cas8b4,cas7b,cas4,cas1,cas2,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7 2 15 1 2

Results visualization

1. NZ_CP024594
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_1 61020-61115 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_2 129322-129417 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_3 1074773-1074869 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_4 2138346-2138581 TypeVI-B1,TypeVI-B2 VI-B2
3 spacers
Csx28,cas13b

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_5 2318334-2318429 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_6 2372740-2381519 Unclear NA
133 spacers
cas2,cas1,cas4,cas3,cas7b,cas8b4,cas5,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_7 2415059-2415471 TypeIII NA
5 spacers
cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024594_8 2420643-2420751 TypeIII NA
1 spacers
cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP024594_6 6.1|2372770|33|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2372770-2372802 33 NZ_CP024594.1 1776142-1776174 0 1.0
NZ_CP024594_3 3.1|1074805|33|NZ_CP024594|CRISPRCasFinder 1074805-1074837 33 NZ_CP024594.1 2383029-2383061 1 0.97

1. spacer 6.1|2372770|33|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to position: 1776142-1776174, mismatch: 0, identity: 1.0

agggcagcgggctcgtcatggaacggcagcggc	CRISPR spacer
agggcagcgggctcgtcatggaacggcagcggc	Protospacer
*********************************

2. spacer 3.1|1074805|33|NZ_CP024594|CRISPRCasFinder matches to position: 2383029-2383061, mismatch: 1, identity: 0.97

tcctccacgatctcggtgtctgatctgcttttt	CRISPR spacer
tcctccacgacctcggtgtctgatctgcttttt	Protospacer
**********.**********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024594_4 4.3|2138516|28|NZ_CP024594|PILER-CR,CRT 2138516-2138543 28 NZ_CP012478 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence 25259-25286 6 0.786
NZ_CP024594_4 4.2|2138450|28|NZ_CP024594|PILER-CR,CRT 2138450-2138477 28 MF479730 Aeromonas phage AS-gz, complete genome 103641-103668 7 0.75
NZ_CP024594_4 4.5|2138450|29|NZ_CP024594|CRISPRCasFinder 2138450-2138478 29 NZ_LT907976 Pseudodesulfovibrio profundus strain 500-1 plasmid paDPRO, complete sequence 15253-15281 7 0.759
NZ_CP024594_4 4.6|2138516|29|NZ_CP024594|CRISPRCasFinder 2138516-2138544 29 NZ_CP012478 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence 25258-25286 7 0.759
NZ_CP024594_6 6.41|2375411|34|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375411-2375444 34 NZ_LN831028 Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence 1934-1967 7 0.794
NZ_CP024594_6 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder 2377694-2377727 34 HQ634191 Cyanophage Syn10 genomic sequence 131659-131692 7 0.794
NZ_CP024594_6 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder 2377694-2377727 34 DQ149023 Synechococcus cyanophage syn9, complete genome 17920-17953 7 0.794
NZ_CP024594_6 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder 2377694-2377727 34 NC_008296 Synechococcus phage syn9, complete genome 17920-17953 7 0.794
NZ_CP024594_3 3.1|1074805|33|NZ_CP024594|CRISPRCasFinder 1074805-1074837 33 NZ_CP016459 Blastomonas sp. RAC04 plasmid pBSY18_3, complete sequence 18073-18105 8 0.758
NZ_CP024594_4 4.5|2138450|29|NZ_CP024594|CRISPRCasFinder 2138450-2138478 29 MF479730 Aeromonas phage AS-gz, complete genome 103640-103668 8 0.724
NZ_CP024594_6 6.41|2375411|34|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375411-2375444 34 NZ_LN831028 Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence 5679-5712 8 0.765
NZ_CP024594_6 6.88|2378484|35|NZ_CP024594|CRT,CRISPRCasFinder,PILER-CR 2378484-2378518 35 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 400465-400499 8 0.771
NZ_CP024594_6 6.99|2379211|35|NZ_CP024594|CRT,CRISPRCasFinder,PILER-CR 2379211-2379245 35 NC_003904 Streptomyces coelicolor A3(2) plasmid SCP2, complete sequence 19491-19525 8 0.771
NZ_CP024594_6 6.118|2380462|34|NZ_CP024594|CRT,CRISPRCasFinder 2380462-2380495 34 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 875765-875798 8 0.765
NZ_CP024594_6 6.135|2380461|35|NZ_CP024594|PILER-CR 2380461-2380495 35 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 875764-875798 8 0.771
NZ_CP024594_6 6.22|2374151|36|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2374151-2374186 36 NZ_CP011665 Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence 130426-130461 9 0.75
NZ_CP024594_6 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375539-2375575 37 AP014148 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S32-C91, *** SEQUENCING IN PROGRESS *** 28819-28855 9 0.757
NZ_CP024594_6 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375539-2375575 37 AP014143 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S24-C76, *** SEQUENCING IN PROGRESS *** 1468-1504 9 0.757
NZ_CP024594_6 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375539-2375575 37 AP014144 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S25-C77, *** SEQUENCING IN PROGRESS *** 1468-1504 9 0.757
NZ_CP024594_6 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375539-2375575 37 AP014147 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S30-C164, *** SEQUENCING IN PROGRESS *** 1468-1504 9 0.757
NZ_CP024594_6 6.48|2375869|35|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375869-2375903 35 MN698248 Pelagibacter phage HTVC202P, complete genome 24879-24913 9 0.743
NZ_CP024594_6 6.41|2375411|34|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2375411-2375444 34 NC_014628 Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence 217081-217114 10 0.706
NZ_CP024594_6 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder 2377694-2377727 34 KJ803031 Dinoroseobacter phage vBDshPR2C, complete genome 5950-5983 10 0.706
NZ_CP024594_6 6.118|2380462|34|NZ_CP024594|CRT,CRISPRCasFinder 2380462-2380495 34 NZ_CP030127 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 578532-578565 10 0.706
NZ_CP024594_6 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder 2377694-2377727 34 KJ621082 Dinoroseobacter phage DFL12phi1, complete genome 68119-68152 11 0.676
NZ_CP024594_6 6.31|2374744|36|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT 2374744-2374779 36 NZ_CP010990 Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence 96334-96369 12 0.667

1. spacer 4.3|2138516|28|NZ_CP024594|PILER-CR,CRT matches to NZ_CP012478 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gatggacgatgatacggcctatttcggt	CRISPR spacer
cttggacgatgatgcggcctctttccgc	Protospacer
  ***********.****** **** *.

2. spacer 4.2|2138450|28|NZ_CP024594|PILER-CR,CRT matches to MF479730 (Aeromonas phage AS-gz, complete genome) position: , mismatch: 7, identity: 0.75

ttattggtgatgataaacaacttcctcc	CRISPR spacer
ttatgggtgatgatgaacaacttaacga	Protospacer
**** *********.********  .  

3. spacer 4.5|2138450|29|NZ_CP024594|CRISPRCasFinder matches to NZ_LT907976 (Pseudodesulfovibrio profundus strain 500-1 plasmid paDPRO, complete sequence) position: , mismatch: 7, identity: 0.759

ttattggtgatgataaacaacttcctcct	CRISPR spacer
cgctgagtgatgataaacaatttccacct	Protospacer
.  * .**************.**** ***

4. spacer 4.6|2138516|29|NZ_CP024594|CRISPRCasFinder matches to NZ_CP012478 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gatggacgatgatacggcctatttcggtt	CRISPR spacer
cttggacgatgatgcggcctctttccgcc	Protospacer
  ***********.****** **** *..

5. spacer 6.41|2375411|34|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831028 (Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.794

gatcgtaacataatctctaaaattttttgtttta	CRISPR spacer
aatagttttataatatctaaatttttttgtttta	Protospacer
.** **  .***** ****** ************

6. spacer 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder matches to HQ634191 (Cyanophage Syn10 genomic sequence) position: , mismatch: 7, identity: 0.794

acaatcatcatgatggacttcttgacatcttggt--	CRISPR spacer
acaatcatcaccatggacttcttg--agtatggtta	Protospacer
**********. ************  * . ****  

7. spacer 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder matches to DQ149023 (Synechococcus cyanophage syn9, complete genome) position: , mismatch: 7, identity: 0.794

acaatcatcatgatggacttcttgacatcttggt--	CRISPR spacer
acaatcatcaccatggacttcttg--agtatggtta	Protospacer
**********. ************  * . ****  

8. spacer 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder matches to NC_008296 (Synechococcus phage syn9, complete genome) position: , mismatch: 7, identity: 0.794

acaatcatcatgatggacttcttgacatcttggt--	CRISPR spacer
acaatcatcaccatggacttcttg--agtatggtta	Protospacer
**********. ************  * . ****  

9. spacer 3.1|1074805|33|NZ_CP024594|CRISPRCasFinder matches to NZ_CP016459 (Blastomonas sp. RAC04 plasmid pBSY18_3, complete sequence) position: , mismatch: 8, identity: 0.758

tcctccacgatctcggtgtctgatctgcttttt	CRISPR spacer
tgttccgcgatctgggtgtctgatctgcagggt	Protospacer
* .***.****** **************    *

10. spacer 4.5|2138450|29|NZ_CP024594|CRISPRCasFinder matches to MF479730 (Aeromonas phage AS-gz, complete genome) position: , mismatch: 8, identity: 0.724

ttattggtgatgataaacaacttcctcct	CRISPR spacer
ttatgggtgatgatgaacaacttaacgag	Protospacer
**** *********.********  .   

11. spacer 6.41|2375411|34|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831028 (Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

gatcgtaacataatctctaaaattttttgtttta	CRISPR spacer
agtagttttataatatctaaatttttttgtttta	Protospacer
..* **  .***** ****** ************

12. spacer 6.88|2378484|35|NZ_CP024594|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

tcgcgaagacggggtgctcgatcccgaagaggtgc-	CRISPR spacer
cgacgaagacgtggtgctcgatcccggaga-ccgcg	Protospacer
. .******** **************.***  .** 

13. spacer 6.99|2379211|35|NZ_CP024594|CRT,CRISPRCasFinder,PILER-CR matches to NC_003904 (Streptomyces coelicolor A3(2) plasmid SCP2, complete sequence) position: , mismatch: 8, identity: 0.771

agggcgcggaggcgggtaccgcgctgcgtaacgtg	CRISPR spacer
agatcaacgaggcgggtaccgcgctgcgcaaggtc	Protospacer
**. *.  ********************.** ** 

14. spacer 6.118|2380462|34|NZ_CP024594|CRT,CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 8, identity: 0.765

aggctggcttccgcctcgggatgcatcgaggctc	CRISPR spacer
acccgcccttccgcctcgcgatgaatcgaggctt	Protospacer
*  *   *********** **** *********.

15. spacer 6.135|2380461|35|NZ_CP024594|PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 8, identity: 0.771

taggctggcttccgcctcgggatgcatcgaggctc	CRISPR spacer
tacccgcccttccgcctcgcgatgaatcgaggctt	Protospacer
**  *   *********** **** *********.

16. spacer 6.22|2374151|36|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.75

----gactttgttgccgccgtgcagggccgcggagcgctg	CRISPR spacer
ctgggacttc----ccgccgtgcagggccgcggcgcggac	Protospacer
    *****.    ******************* ***   

17. spacer 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to AP014148 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S32-C91, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.757

atgaaaattcttttttcttgtttatgttttgtaacta	CRISPR spacer
attgctatatctttttcttgtttatgtattttaacta	Protospacer
** .  ** ..**************** ** ******

18. spacer 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to AP014143 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S24-C76, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.757

atgaaaattcttttttcttgtttatgttttgtaacta	CRISPR spacer
attgctatatctttttcttgtttatgtattttaacta	Protospacer
** .  ** ..**************** ** ******

19. spacer 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to AP014144 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S25-C77, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.757

atgaaaattcttttttcttgtttatgttttgtaacta	CRISPR spacer
attgctatatctttttcttgtttatgtattttaacta	Protospacer
** .  ** ..**************** ** ******

20. spacer 6.43|2375539|37|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to AP014147 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S30-C164, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.757

atgaaaattcttttttcttgtttatgttttgtaacta	CRISPR spacer
attgctatatctttttcttgtttatgtattttaacta	Protospacer
** .  ** ..**************** ** ******

21. spacer 6.48|2375869|35|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to MN698248 (Pelagibacter phage HTVC202P, complete genome) position: , mismatch: 9, identity: 0.743

aatagtatct-----gtacaatctgcaatagcatttccat	CRISPR spacer
-----taattctaaagtaccatctccaatagcatttccat	Protospacer
     ** .*     **** **** ***************

22. spacer 6.41|2375411|34|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 10, identity: 0.706

gatcgtaacataatctctaaaattttttgtttta	CRISPR spacer
tagtggtgtataatctctaaatttttatgttttg	Protospacer
 * .*  ..************ **** ******.

23. spacer 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder matches to KJ803031 (Dinoroseobacter phage vBDshPR2C, complete genome) position: , mismatch: 10, identity: 0.706

acaatcatcatgatggacttcttgacatcttggt	CRISPR spacer
agagcagtcatgatggactgcttcacatcttttc	Protospacer
* *.. .************ *** *******  .

24. spacer 6.118|2380462|34|NZ_CP024594|CRT,CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

aggctggcttccgcctcgggatgcatcgaggctc	CRISPR spacer
gcccggccttcagcctcgggatgcaccgagggga	Protospacer
.  * * **** *************.*****   

25. spacer 6.76|2377694|34|NZ_CP024594|CRT,CRISPRCasFinder matches to KJ621082 (Dinoroseobacter phage DFL12phi1, complete genome) position: , mismatch: 11, identity: 0.676

acaatcatcatgatggacttcttgacatcttggt	CRISPR spacer
agtgcagtcatgatggactgcttcacatctttcc	Protospacer
*  .. .************ *** *******  .

26. spacer 6.31|2374744|36|NZ_CP024594|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 12, identity: 0.667

gctccgccttgcgcacgccgtcctcgtcgttaaata	CRISPR spacer
cgggcgccttgagcacgccgacctcgtcgtggtggg	Protospacer
    ******* ******** ********* . . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1528505 : 1576934 47 Ralstonia_phage(33.33%) tRNA,integrase,transposase attL 1524118:1524132|attR 1566909:1566923
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Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP024594.1|WP_004584358.1|911478_911892_+|PcfK-like-protein 911478_911892_+ 137 aa aa 40 NA NA No NA
NZ_CP024594.1|WP_039417454.1|1567341_1567764_+|PcfK-like-protein 1567341_1567764_+ 140 aa aa 40 NA NA 1528505-1576934 NA