CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020980	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6988R plasmid pA, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP020979	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6988R chromosome, complete genome	2 crisprs	WYL,cas3,DEDDh,csa3,DinG	0	7	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020979_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020979_1

545064-545416

Orphan

Consensus_repeat	Method
TGGAAACGGTCAACGGCAGCATC	CRISPRCasFinder
TGGAAACGGTCAACGGC	PILER-CR

6 spacers

WYL

The CRISPR arrays of NZ_CP020979_1

>merge|NZ_CP020979|1|545064-545416|CRISPRCasFinder,PILER-CR
TCAGCAAGGTCAACGGCAAGATCAGCGCAGATGCCGGCAAGACCTATGGCGCCCTGGAAACGGTCAACGGCTCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACGTGGAAACCGTCAACGGCGGCATCCGCATCGGCGACAACGCGCGTACCGGGGGCGTGGAAACGGTCAACGGCTCGATCACGCTGGGCCAGAAGGTGATCGTGTCCGGCGGGCTGGAAACGGTCAACGGCAGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGAGTGGAAACGGTCAACGGCAGCATCGGGCTGGTGGGGACCGAGCTCGGCAAGGGCATCGAGACGGTCAATGGCGACATC

>NZ_CP020979|1|1|545064-545416|CRISPRCasFinder
TCAGCAAGGTCAACGGCAAGATC	AGCGCAGATGCCGGCAAGACCTATGGCGCCC
TGGAAACGGTCAACGGCTCCATC	GAGATCGGTGCCGGTGCGCAAACCAAGAACG
TGGAAACCGTCAACGGCGGCATC	CGCATCGGCGACAACGCGCGTACCGGGGGCG
TGGAAACGGTCAACGGCTCGATC	ACGCTGGGCCAGAAGGTGATCGTGTCCGGCGGGC
TGGAAACGGTCAACGGCAGCATC	CTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGAG
TGGAAACGGTCAACGGCAGCATC	GGGCTGGTGGGGACCGAGCTCGGCAAGGGCA
TCGAGACGGTCAATGGCGACATC

>NZ_CP020979|1|1|545118-545356|PILER-CR
TGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACG
TGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGGGGCG
TGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAGGTGATCGTGTCCGGCGGGC
TGGAAACGGTCAACGGC	AGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGAG
TGGAAACGGTCAACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020979.1\|WP_007968176.1\|548658_549792_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020979.1\|WP_099802641.1\|541972_543496_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP020979.1\|WP_007964894.1\|557469_561942_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP020979.1\|WP_099803340.1\|547920_548364_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP020979.1\|WP_099802635.1\|535352_535718_+\|DUF1330-domain-containing-protein	unknown	unknown	unknown
NZ_CP020979.1\|WP_007968174.1\|550429_551482_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020979.1\|WP_099802644.1\|555423_555777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020979.1\|WP_089111262.1\|555791_557273_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553
NZ_CP020979.1\|WP_099802636.1\|535841_536969_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP020979.1\|WP_007968172.1\|552256_553330_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP020979.1\|WP_099802642.1\|545814_547611_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP020979.1\|WP_099802640.1\|540817_541810_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP020979.1\|WP_099802639.1\|539696_540389_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP020979.1\|WP_033481284.1\|540497_540818_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP020979.1\|WP_022557799.1\|562144_562525_-\|proteinase-inhibitor	unknown	unknown	gnl\|CDD\|288556
NZ_CP020979.1\|WP_099802634.1\|534578_535304_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP020979.1\|WP_022557795.1\|553639_554698_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP020979.1\|WP_099802638.1\|538137_539478_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP020979.1\|WP_099802637.1\|537169_537871_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP020979.1\|WP_033481293.1\|543600_544836_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278

Protein	Function_ID	Function_description	E-value
NZ_CP020979.1\|WP_007968176.1\|548658_549792_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	9.71902e-58
NZ_CP020979.1\|WP_089111262.1\|555791_557273_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP020979.1\|WP_007964894.1\|557469_561942_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP020979.1\|WP_099803340.1\|547920_548364_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	3.49103e-05
NZ_CP020979.1\|WP_099802641.1\|541972_543496_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.40561e-129
NZ_CP020979.1\|WP_007968174.1\|550429_551482_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	1.04404e-59
NZ_CP020979.1\|WP_099802636.1\|535841_536969_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.43026e-23
NZ_CP020979.1\|WP_007968172.1\|552256_553330_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	5.10235e-62
NZ_CP020979.1\|WP_099802642.1\|545814_547611_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.11779e-122
NZ_CP020979.1\|WP_099802640.1\|540817_541810_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	1.91549e-143
NZ_CP020979.1\|WP_099802639.1\|539696_540389_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	4.38403e-26
NZ_CP020979.1\|WP_033481284.1\|540497_540818_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	2.27778e-52
NZ_CP020979.1\|WP_022557799.1\|562144_562525_-\|proteinase-inhibitor	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	1.35722e-19
NZ_CP020979.1\|WP_099802634.1\|534578_535304_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.02457e-54
NZ_CP020979.1\|WP_022557795.1\|553639_554698_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP020979.1\|WP_099802638.1\|538137_539478_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.2394e-134
NZ_CP020979.1\|WP_099802637.1\|537169_537871_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.13452e-07
NZ_CP020979.1\|WP_033481293.1\|543600_544836_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.65433e-91

>NZ_CP020979.1|WP_033481293.1|543600_544836_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSSLQQERAQLQRGLQSQRTQLAALLRAADQVGRNAPLKVLLSQDTVGDATRMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVIANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGASIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP020979.1|WP_099802641.1|541972_543496_-|S41-family-peptidase
MRVAVLSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVVLTIMRDKTPKPFDVTLQRETIRVASVRSKLLEPGYGYIRISTFQADTGADFQKNLKQLQADGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRARIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLVPEPQPGDTDAPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAAKTGAEPKPAAARPATTDKPRSAEPAGKAKPATAPAAPAEPVQPTPPADKPAEPVN
>NZ_CP020979.1|WP_099802640.1|540817_541810_+|D-2-hydroxyacid-dehydrogenase-family-protein
MRVVVPDDYQGAVARLPCLQQLQGHQVQVLGALDEALDARAACLADADALVLIRERTRVDAALLQRLPRLKLISQTGRVGAHVDVAACTALGVAVAEGVGSPVAPAELTWALILSASRRLADYQHALQQGRWQALGDPGLGRVLHGRTLGIWSYGRIGQRVAGFGRAFGMQVLVWGGEASCAQAARDGFAVAGSREELFERSDVLSLHRRLTAQTRHDITAQDLARMRDDALLVNTSRAELIAPGALLAALDAGRPAQAALDVFEHEPVLDPRDSLLRHVRVLATPHLGYVERDSYALYFDAAFDNVLAFAAGTPRNLVNPEVLATTQRA
>NZ_CP020979.1|WP_033481284.1|540497_540818_+|DUF1820-family-protein
MSKPLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP020979.1|WP_099802639.1|539696_540389_+|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRFLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP020979.1|WP_099802638.1|538137_539478_-|outer-membrane-protein-transport-protein
MSTASTLSRATLLAVGIAGVLAVGQAHGAAFQLKENSARGLGRAFAGSGSAPDDASIIATNPAGMRQLDGRLFQADVSAISFSAKFQPDTVAYANGAPVSGGNGGDAGMIAPVPALYFHVPFGENDNMHLGTSLTVPFGFKTEYDRDWVGRYHGTKTELQAIDFNVAFSYDVNPYVSFGASVFAERLDIDLANAVDFGSVLAARRVPGFAPGSADGYSRIKGDSTEVGFTLGGLFSIDENTHIGFSYRSQVEHKITDGTADFTVPGSAAAVLSVAAPGTFVDTKGRATVKLPASATASFTHNVNEQWSIMADVTRTAWSKFDQVTVDFASNQPDSVLDFSYRDTTFASIGADYRLSDTVTLRGGLAYDQTPTTAEHRDVRVPDASRKWVSLGMSWRPSAQTEYNFGYTHLFTSDPTSDTRSATGDRLAGSYDVKGDVLAASINYKF
>NZ_CP020979.1|WP_099802637.1|537169_537871_-|2OG-Fe(II)-oxygenase
MSQPDFIQITDNAIAHEECVAIVQRMRQSQQLHPGRIGGGVFPDLKHSRDLRISGMAEWAEVENRLQQAVFEGVLTYVRQYPQALISPLMLQVTTADGTPHRLVAEDIVQMSDQALGDLARTCLRPGAINLQWYTADQGGYPYWHCELYPRDANADTLHRHLLWTLYLNDDFAQGETEFLFQQRKARPRTGSLLIAPTAFTHTHRGNRPVGGDKFIATSWILFQSAQALYGGE
>NZ_CP020979.1|WP_099802636.1|535841_536969_-|PA0069-family-radical-SAM-protein
MQKNSFPGASAAAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGALDADGETALRPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLHISRQCLEVLAQARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALHAAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLDLF
>NZ_CP020979.1|WP_099802635.1|535352_535718_+|DUF1330-domain-containing-protein
MVAFSPNALSAFLDNEDTSAIVMLNLIRFQADGGRERYHRYLRLATPILARFDAHIVFSGDGLPVLTAGQAQAWDAVTLVQYPGRSAFKQMIADVEYQQAFEVGRSAIAEIVLQPFHGITL
>NZ_CP020979.1|WP_099802634.1|534578_535304_+|YafY-family-transcriptional-regulator
MSRTTRLFELLGLLRAHRRPVSAAALASELGVSQRSLYRDIDTLRALGAPLEGQAGVGYYLKPGFFLPSLAFSQEELDAVMLGLDWVKQRADPALARCGESALAKILSARKHGDGTGIDVAPPAILTAASTSEAVDHPQTAVLRDAIRRQCKLAIGYVDAQDTPSERIVWPIALVYFDDVRVLAAWCERRSAFRHFRVDRLQVRAVLEARYPQSRQALVKQWRQQDRDWRSLLTVSDTAQR
>NZ_CP020979.1|WP_099802642.1|545814_547611_+|M28-family-peptidase
MPRKILLCLAATLALAGCKREPADAPSAPAAQTPTESAPSAPVSRHTFSPDMTTGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLAQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGESGDNIYNGAVDNATGVAGILEIADAFAHQDPKPARSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQNGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAAAAQPADAASTATETNTAKPPR
>NZ_CP020979.1|WP_099803340.1|547920_548364_-|PepSY-domain-containing-protein
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEVTSMLTAKGYTKVHDVKFEHGVWTADARSGDGKDVDVHIDPVTGRVYGDQTTSKLSEADVRASLSTGGYADVHDLKFTDGLWKADAKRNGQKVELHVDPEDGHVVSVDND
>NZ_CP020979.1|WP_007968176.1|548658_549792_-|glycoside-hydrolase-family-5-protein
MSAVCFSLRTLLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEYASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTAGGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALVFNSDNAVMFGLMNEPNNISASEWAGAAQAAIDAIRRTGANNLILVPGALWTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLSHMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQAALATRAPVAAAAARTSAASTSATSVSVARTTR
>NZ_CP020979.1|WP_007968174.1|550429_551482_-|glycoside-hydrolase-family-5-protein
MKSLTTHTRRLRCRALSFLLLATMPLAQAQSATGLKYAGVNLSGAEIKSSQKPGVLNIDYRYPAADEYAYFAGKHMNTVRLPILWERLQPRAGGELDPAQLALIRQAVANAKAAKMYVIVDVHNYAKYYGHTIGSTKVPISTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWATAAQASIDTIRKTGATNLILVPGALWTGAHSWYSTVAGQSNAVAMASIRDPLNRYAIEAHQYLDADSSGTSGGCVSATVGVERLRSFTEWLRLNKKRGFLAEFGTGNTVTCNLALNGMLGYMESNGDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP020979.1|WP_007968172.1|552256_553330_-|glycoside-hydrolase-family-5-protein
MFRTPPHLSRLRTAALALTLIAAIPLVQAKEPAGPKKESAGLKYVGVNLSGAEFNSRKKPGTLFKDYTYPAASDFSYFAGKGMNTIRLPFLWERVQPELNGQLDQAQLGLIKKSLEAAKANKQYLILDLHNYATYSGKRIGTSDVPASALADLWRRLALEFKDDKAVIFGLMNEPNGISAPDWANAAQGTINAIRKTGAKNLILVPGTAYTGAHSWRSTSYGVSNAKALEILKDPGNNLAFEAHQYLDKDYSGTKPVCTSDSVGQEKLQGFTSWLRENKQKGFLGEFATANNPVCDKALEGMLTYMEKNSDVWLGWTWWAAGSWWKPDYPFTVQPGKDGSDKPQMAILSKYARRAGK
>NZ_CP020979.1|WP_022557795.1|553639_554698_+|NAD(P)-dependent-alcohol-dehydrogenase
MSTAHAYAAQAADQPLAPFVFERRAPGPNDVQIDIAYCGVCHSDLHTARNEWHNTLYPSVPGHEIVGRVTAVGNAVTGFKVGDLAGVGCMVDSCRSCASCQEGEEQYCEAGFTGTYNGPMFGGGENTYGGYSDHIVVDQKYVLRITHSDNLAAVAPLLCAGITTYSPLAHWKVGPGQKVGVVGLGGLGHMAVKIAKAMGATVVLFTTSESKRADALRLGASEVVISKDEAQMAAQYNTLDFILNTVAAPHNLDPFLNALKRDGAMVLVGVPEQSHPSPAVFNLIMKRRTLAGSLIGGIRQTQEMLDFCAKHNIVSDIETIRADQINAAYERMLKSDVKYRFVIDMATLDKAA
>NZ_CP020979.1|WP_099802644.1|555423_555777_-|hypothetical-protein
MLRSLFTCLLILTASSAIAAPAATCQESDNLRFDGFPLSIVQMEQIGLTYAAKNTKAPQVPFAYANKDWLWLKEQYRPGDYFLAYEQLWPASGKPFASGYALVRGRCVLGVLSIRVS
>NZ_CP020979.1|WP_089111262.1|555791_557273_-|FAD-dependent-oxidoreductase
MSRKQAFQFLDLPRTMPTRIPVELRTSGDWGELYGRFDKADAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRIEEAAALCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTAFKMGWRPDLGNVQPSGHRVAVIGAGPAGLACADRLARAGIEAVVYDRYEQIGGLLQFGIPSFKLDKSVIGKRREILEGMGVQFRLGVEIGKDISIEQLLAEYDAVFLGTGAYRYTDGGLPGQDLKNVLPALPFLVQNSRIVSGNDPHGRPIAGWEDQLALPDLTGKRVVVLGGGDTGMDCVRSAIRLGAAKVTCAYRRDEASMPGSAREVANAREEGVRFLFNRQPLSIESGADDEAIGVTVVETKLGEPDASGRRNAVPVEGSESLLEADVVIIAFGFSPTLPDWLASQGVEAGSNGRIVAPADGNGRLPYQTTNPRLFAGGDCVRGADLVVTAVAEGRDAAGSIVQMLGVKAQVKEPAAA
>NZ_CP020979.1|WP_007964894.1|557469_561942_-|glutamate-synthase-large-subunit
MAPRTRQGLNDDGLYNSMRDERDACGFGMVAQLDDQPSRALVDTAIAALSRMTHRGGVAADGLTGDGCGLLIRKPDAFLRGLARDAGIALGTRYAAGVVFLPLDEADAARCRAELEAQLHSAGVHLRGWRVVPTDDSVCGQLARDTLPRIEQVFVDAGAEQTEDGFTLALFLARRRAEQALHAVENFYVTTLSPNGISYKGMVLPDKLSTFYPDLQRSDLSSSAIVFHQRFSTNTLPRWPLAHPFRLLAHNGEINTIEGNRRWAQARSKVWQTPRFDIAQFDPVISMHGSDSQSLDNMLELLIAGGMDLLQALRILVPPATQSLEFKDADLAAFYEFYGLNTEPWDGPAGIVACDSRYAACMLDRNGLRPARWMLTSDRHFLVASEAGVWELPAERITRKGKLGPGEMMAIDLKRGDLLDSDAIDRINRARAPYKQWLQQGVTYLQTELIDPSLVEEPFSEQTLRSYHKLFQLSTEEVEQVLRPLAETEQEATGSMGDDTPMAVLSRQTRPLYDYFRQAFAQVTNPPIDPLREGIAMSLTTQLGKETNIFHAGAETVNHVILNSPVLSQRKLRQLLKMEQYVERNRLIDLSYSLEEGLKAGLERICQEVEAAARAGAVMLLLSDRYPVPDRPMAHALLATGAVHHHLCKVGLRCDVNLIIETGTARDPHHMACLLGVGATAVYPYLAYQTLFDLGRRGILQLSKGGEQSQIGRRYRKGIYKGLSKIISKMGICTIASYRGAQLFEIVGLDPDVVDLCFADTPARIGGVDLARLDTEARELTVRAWNDQLKPEVGGLLKYVHGGEYHMYNPDVVMTLQRATRTGDAGDWQKYVDAVHARPASTLRDLVQLKRADTPTPLDDVAPAEDVLRRFDSAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTEKRSKIKQVASGRFGVTPEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPTALVSVKLVAHAGVGTIAAGVVKAGADLITVSGHDGGTGASPVSSIRYAGVPWELGVAESHQALVANDLRERTILQTDGGLKTGLDVVKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRAGYFTGLPERVEHFFRLLAEEVRQWLSYLGVRSLDEIVGRTDLLEQLDVSPRPGVKVDLSRLLTHAQYDGSHCAAQRLYESPDSLATQMDGLLADAIANKRGGDHRFLIHNTDRSIGARLSGAIARAHGNHGMSDAPLNLRFRGTAGQSFGAFNAGGLQLELEGEANDYVGKGMAGGRLVVRPPRGARFEARNTPIVGNTCLYGATGGELFAAGRAGERFAVRNSGALAVVEGAGDHCCEYMTDGVVLVLGKVGLNFGAGFTGGLAYVLDIERDFVDRYNHELIDIHRVSAEGFENHRQHLHTLISRHRELTGSIWAQQILDEFRDYIGKFWLVKPKAASIESLTESLRRAA
>NZ_CP020979.1|WP_022557799.1|562144_562525_-|proteinase-inhibitor
MRAVLPIARLACTLVVLTALTACNKPQPDEQEAVTANAQHAAEQAAAPAPDAAPEAPPIGSCDATQVQSLVGQPLTDAVGEQARSDAGAKSVRVLKPGQMTTMEFNGERLNLEVDAKNVISSVRCG

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Crispr_ID: NZ_CP020979_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020979_2

773213-773313

Orphan

Consensus_repeat	Method
TCGGCCGAAGGGCGCACCTGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP020979_2

>merge|NZ_CP020979|2|773213-773313|CRISPRCasFinder
TCGGCCGAAGGACGCACCTGCACGGCGGCCAGGGTGCGGATGTCGCTGGTGCGTTCCAGGGTCTGCTGGGCGATCTGGTCGGCGGCCGGACGCACCTGGAC

>NZ_CP020979|2|2|773213-773313|CRISPRCasFinder
TCGGCCGAAGGACGCACCTGCAC	GGCGGCCAGGGTGCGGATGTCGCTGGTGCGTTCCAGGGTCTGCTGGGCGATCTGG
TCGGCGGCCGGACGCACCTGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020979.1\|WP_099206335.1\|764565_766293_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP020979.1\|WP_007974735.1\|762121_763147_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP020979.1\|WP_099800906.1\|779986_781534_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
NZ_CP020979.1\|WP_003488348.1\|772450_772927_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP020979.1\|WP_003488515.1\|761593_762106_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP020979.1\|WP_003488520.1\|763613_764210_-\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP020979.1\|WP_089140736.1\|770871_772101_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP020979.1\|WP_099800905.1\|776646_777549_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|179147
NZ_CP020979.1\|WP_022557907.1\|769306_770059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020979.1\|WP_007966372.1\|773801_774122_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP020979.1\|WP_099800907.1\|781732_782905_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP020979.1\|WP_099800904.1\|775351_776521_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP020979.1\|WP_007972046.1\|783103_784114_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552
NZ_CP020979.1\|WP_099800903.1\|767769_769116_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP020979.1\|WP_099802710.1\|778328_779978_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP020979.1\|WP_003488352.1\|770161_770779_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020979.1\|WP_005912222.1\|774223_775240_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP020979.1\|WP_007966358.1\|766342_767785_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP020979.1\|WP_003468167.1\|784178_784337_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP020979.1\|WP_007972041.1\|777701_778085_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799

Protein	Function_ID	Function_description	E-value
NZ_CP020979.1\|WP_099206335.1\|764565_766293_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP020979.1\|WP_007974735.1\|762121_763147_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	4.57783e-180
NZ_CP020979.1\|WP_099800906.1\|779986_781534_+\|transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	1.02743e-19
NZ_CP020979.1\|WP_003488348.1\|772450_772927_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.47465e-81
NZ_CP020979.1\|WP_003488515.1\|761593_762106_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	3.40232e-69
NZ_CP020979.1\|WP_003488520.1\|763613_764210_-\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	3.12215e-108
NZ_CP020979.1\|WP_089140736.1\|770871_772101_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.35779e-20
NZ_CP020979.1\|WP_099800905.1\|776646_777549_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	4.34264e-47
NZ_CP020979.1\|WP_007972046.1\|783103_784114_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.51368e-82
NZ_CP020979.1\|WP_007966372.1\|773801_774122_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	1.76533e-09
NZ_CP020979.1\|WP_099800907.1\|781732_782905_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	7.48708e-34
NZ_CP020979.1\|WP_099800903.1\|767769_769116_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.92387e-175
NZ_CP020979.1\|WP_099802710.1\|778328_779978_+\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP020979.1\|WP_099800904.1\|775351_776521_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.75251e-63
NZ_CP020979.1\|WP_005912222.1\|774223_775240_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP020979.1\|WP_007966358.1\|766342_767785_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.99323e-32
NZ_CP020979.1\|WP_003468167.1\|784178_784337_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00222793
NZ_CP020979.1\|WP_007972041.1\|777701_778085_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.27067e-20

>NZ_CP020979.1|WP_003488348.1|772450_772927_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHADLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>NZ_CP020979.1|WP_089140736.1|770871_772101_+|MFS-transporter
MPMTKARPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGVLALMAVLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLSLGAIALLAVALWAGCRGMLQAGASVQAETML
>NZ_CP020979.1|WP_003488352.1|770161_770779_+|hypothetical-protein
MHWVDPDFLPATRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSEALLKALKPGSALTVRGLKPRDVEMLVALAIDPEGGKRILDEGPHGPHAKPKPKPPGKPPKPEVAQHSGTITRLLHGPHGQVHGVLLDDAVTVRFPPHAGGDFAKQLVVGKPLVAEGETKATPHGVLIHAHALGGKAATLKQIEHPPHGPAHKPKPKPKH
>NZ_CP020979.1|WP_022557907.1|769306_770059_+|hypothetical-protein
MMRQTVLAIALACTIGAAAAQVAAPPPPPAPNGPIGGPPAPPTPVAATPVSVSGTVERFLLNPNGDVDGLWLRDGTQVGFPPHLSSEVKAAVRAGDSVVVKGFRLGNLPVLQVSSIRSGRSGREVVDRPPTFGAAPPPPPTPGQLTPLQSDGTIHRLVYGPAGEVNGALVSDGTVVRMPPHLALQFADLLRVGAPLSASGLGVATPDGRAIEATQLGRDRSSLRALFTAPRPDGPLPPPPPGAPVPPAGR
>NZ_CP020979.1|WP_099800903.1|767769_769116_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFRTTLQATLRSLGHTAVAAENGPDGLARLSEGGIDMAFVDFRMPGMDGIAVLRARLDDAQARQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLSRADTRAAATDALSASAEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARALHRASPRASAPFVAVNCAAIPLELMESELFGHRKGAFSGASSDRRGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYRLNVVPIELPPLRERGQDILLLAQHFLSANAARAQSLSPAAQERLLAHRWPGNVRELRNVMQRSQVLVRGASIDAADLEEALGEAGEAPPNVASALTGTLPEAVAQLEKQMIQSALEQSQGNRAEAARRLGIHRQLLYRKLEEYGL
>NZ_CP020979.1|WP_007966358.1|766342_767785_+|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWMVIVAACLGVATMLYGLYRQTEGVRLEEARQQLGGQCARIVQRYAGASEAARRGDDGVGLAAVVVQLVLADAPGVEGGVWDLHKGFVAYAYPTYDGSDHKTDIPAAEWANIVNTAQQSVTTKQAAQYRRDGRREVLLISACPLASGSAAWTMTRVPASKADAWRPLVVGMLLIFAMVAISAIALGVLVRRWSQRLQRIQQALAADTETPHIPPTGTPELDRLGAAVNDYAQRNAQALAQTRRLADELSRHERLAALGRMTATVAHEIRNPIATMRLALENEIARDDATPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLHLETVVVQDWLATLLEPSPLPPGTPPPRVLLPAAPLRWTLDPQQLGRAVHNLLRNAAQHADPGSEVTLQAEAVEGILQLQVCNRGAPIAEPIAAHLFEPFVSGRADGNGLGLALVREIARAHGGHARYAHADGLTHFILELPWRAS
>NZ_CP020979.1|WP_099206335.1|764565_766293_+|ubiquinone-dependent-pyruvate-dehydrogenase
MAKKRTLARFLAETLQSAGVERIWGVTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGELAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLSYFQETHPQELFRECSHFVELVTNPAQLPEVLHRAMRSAILQQGVAVVVIPGDIALLEVDKHVSSAWPALRQPRVLPAAEDVQQLAELLQQSKAVTVLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWDNPFDVGMTGLIGFSSGYHAMLNCDTLLMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREERGFLEKSLAHYRKAREGLDDLAVPADPGEPLHPQFVTRLISQIADQDAVFTCDVGTPTVWAARYLRMNGKRRLLGSFNHGSMANAMPQALGAQAAFPGRQVISLSGDGGFAMLMGDFISLAQLNLPVKVVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESSQLERALRQAFAHSGPALVDVRVATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIALVKTNLR
>NZ_CP020979.1|WP_003488520.1|763613_764210_-|Ax21-family-protein
MKTSLLALGLLAALPFAASAAENLSYNFVEGDYVRTPTEGRDADGWGVKASYAIAPNFHVFGDYSKQNADDNNNVFENTDSDFQQWGVGVGFNHEIATSTDFVARVAYRKLDLDTPNINFDGYSVEAGLRNAFGEHFEVYALAGYEDFSKKRGIDIGDNFYGRLGAQVKLNQNWGINGDIRMDGDGNKEWSVGPRFSW
>NZ_CP020979.1|WP_007974735.1|762121_763147_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDLTHKIAVLGAGSWGTALAALLARHGHPTVLWGRDAAMVDTIDRTHENARYLPGIALPDSLRATTDLQAAVADATWILVVVPSHAFTETIRLIAPLRPAGAGVAWATKGFEPGSGRFLHEVARDILGPSVPLAVVTGPSFAKEVTLGLPTAITVHGDDAAFAQVVADAMHGPTFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAVIGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSLDEAIREIGQVVESVQTADEVMRQAEHHGIELPISNAVRAVLHGEITPEAGLKELLARERKPEYPQTLFT
>NZ_CP020979.1|WP_003488515.1|761593_762106_+|protein-export-chaperone-SecB
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA
>NZ_CP020979.1|WP_007966372.1|773801_774122_+|DUF4156-domain-containing-protein
MRVLMLSVLVATTTAACTWVPIEQSGKGVRVLPAGPVPAGCQQQGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPGANANAVQAQGQPADGSQRFNAFRCPPR
>NZ_CP020979.1|WP_005912222.1|774223_775240_+|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHVDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFMAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP020979.1|WP_099800904.1|775351_776521_+|Fic-family-protein
MPHRTTGHYVAGALAGSRYQAFVPGPLPPVPALDFAQVDLVARKERADQALGRFEGITLMLPDPELLLHQYVRKEALLSSQIEGAQSSLSDLLLFEMDAAPGVLMDDVEEVSNYVAALNHGLRRLREDDFPLSLRLIREMHALLLQGGRGASKQPGEFRRSQVWVGGASPALAHLVSPPPDAVPGTLAALEQFLHAPPGQIPPLVKAALAHVQFETIHPFSDGHGRLGRLLITLILCSEGVLREPSLYLSLYFKRRRADYYDRLNAVRLNGDWEGWLGFFLDGVAETAQQAVDAAQRLLALLARDRARIAALGKRVGNVGLVFEQFARRVVLAVPQVAPHLSLSVPTIRAAVRTLQELKIVNKLTGQQRHRIFAYQAYLDILSEGAQPL
>NZ_CP020979.1|WP_099800905.1|776646_777549_+|alpha/beta-fold-hydrolase
MNYPGYPFTPKRLDVRPGVAMSYLDEGPRDGEVVVMLHGNPSWSYLWRHLVSGLSDRYRCIVPDHIGMGLSDKPDDAPDAQPRYDYTLQSRVDDLDSLLRHLGITGAVTLAVHDWGGMIGFGWALSHHAQVKRLVITNTAAFPLPAEKPMPWQIAMGRHWRPGEWFIRTFNAFSSGASWLGVSRRMPSEVRRAYVAPYNNWRNRISTIRFMQDIPLSPADKGWSLLERSAQALPSFADRPAFIAWGLRDICFDKHFLAGFRKALPQAEVTAFDDANHYVLEDKHEVLVPAIRAFLERNPL
>NZ_CP020979.1|WP_007972041.1|777701_778085_-|YkgJ-family-cysteine-cluster-protein
MAHPCLTCGACCAYFRVSFHWSEADPALGGRVPIELTEALRTHERVMRGTSQSQPRCIALDAEIGRYSRCSIHDRRPSSCAAVPASLEFGERSAQCDKSRLAHGLHALTDADWVGVDDAQRNPLPPV
>NZ_CP020979.1|WP_099802710.1|778328_779978_+|AMP-binding-protein
MTTLCNIAATLPQLARERPDQIAIRCPGGRGANGFAAYDVTLSYAELDARSDAIAAGLARHGIGRGARAVVMVRPSPEFFLLMFALFKAGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIPLAQLARRLLRWARSAKQIVTVGGRYGWGGVTLARVERDGAGAGSQLADTGPDDVAAILFTSGSTGVPKGVVYRHRHFVGQIELLRNAFGMQPGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPGSADPRKLHDAINRFGVTQLFGSPALMRVLADHGQPLPDVRLATSAGAPVPPDVVAKIRALLPADAQFWTPYGATECLPVAAIEGRTLDATRAATEAGAGTCVGQVVAPNEVRIIAIDDAAIADWSGVRVLATGEVGEITVAGPTATDAYFNRDAATRIAKIRERCSDGSERVVHRMGDVGYFDAEGRLWFCGRKTHRVEAASGPLYTEQVEPVFNVHPQVRRTALVGVGAPGQQQPVLCVELQPGVSASAFAQVESDLRALGAAHPHTAGVARFLRHSGFPVDIRHNAKIGRETLAVWATQQR
>NZ_CP020979.1|WP_099800906.1|779986_781534_+|transcriptional-regulator
MRARYRLDDLRIDIARQRVERDGVALEVTGLSFRLLHYLLQQGQRVVDFDELIQHVWAPALVNEETVTQRVRLLRQALGDDSRQPRYVRSVRGQGYQLCVPVQQEQVPPAMRRHYAWPVAAVAALVCIGAGVIGWLQTRDAPPAAAALVQRAAYYAGIGQRDDNDRAIDLYGQRLQQAPDDRQAQLGLSRAYSARVCQYDGDAAYAARALQLANGVVTAQPDLAAAHAARGYALDCQGRNADALAAYEQALQLDADADAVRGSAAYLYERRGKLVQALTANLAVRDPTRVRFLPIQIASNLSLLGYAGAAETRYRTNFQLYPDDPFSNLAWPTFLFEHGRAAEAETALNASLNRGTAYAGLSVLQAELAWARGDESLARQAALHAIQLRPQGSFAQTVAWAVHAQPLPAPAVLRMRAQELLNSVERGGDPFDAIDAAVLLLCADAPEVAMRALQRAETAGYRNAGYLRQSPLLKPLRRSPEFIALLARIDADLAAQRAQLRRRNLLPTDAVSGSN
>NZ_CP020979.1|WP_099800907.1|781732_782905_-|serine-hydrolase
MCRPSLLLSALLAASALHAAPPIAASPATTPTAAGPAKATLPPATPPILGDGWPVASVATSGWNLALLAQMEQALADDLAPSTTSVLIVRDGVLVYEKYLGDATRETLHDTRSLTKSVTALLVGAAIERKLLPSAQAKVFDYFGDRQWQHPDPRKRAITVEDLLTMSSQLECNDDNEFSAGNEERMYLSADWTQFALDLPIRGYAPWMQRPEHSPYGRAFSYCTAGSFLLGALLEKVTGQPLRAFAGEVLETPLGIKNVQWTVSSEGVGMGGGGTRYRSRDLAKLGQLLVAQGRWQGRQVIPADWIRAMTRVQAQAREDADYGYLTWHFRFPVHGVQRDTWAMSGNGGNDVFVVPAERLVVVLTRSAYNTRQMHQQSQRVLTDYVLKALP
>NZ_CP020979.1|WP_007972046.1|783103_784114_+|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVTGGGGFLGQALCRGLRARGHEVVSFQRGDYPVLQRLGVGQIRGDLADPQAVRHAFAGIDAVFHNAAKAGAWGSYDSYHQANVVGTQNVIEACRANGVPRLIYTSTPSVTHRATNPVEGLGADEVPYGDDLRAAYAATKAIAERAVLAANDAQLATVALRPRLIWGPGDNHLLPRLAARARAGRLRMVGDGGNLVDSTYIDNAAQAHFDAFQHLAVGAACAGKAYFISNGEPLPMRELLNRLLAAVDAPAVTRSLSFNTAYRIGAVCETLWPLLRLPGEVPLTRFLVEQLCTPHWYSMEPARRDFGYVPRISIEEGLQRLRSSSSNDIAITR
>NZ_CP020979.1|WP_003468167.1|784178_784337_+|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRRGKV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	25338-25368	5	0.839
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	463181-463214	5	0.853
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	CP043032	Dermacoccus abyssi strain HZAU 226 plasmid unnamed, complete sequence	11531-11564	5	0.853
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	841349-841379	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	841095-841125	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	741214-741244	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	811280-811310	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	740329-740359	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	742907-742937	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	742896-742926	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	741201-741231	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	741220-741250	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	741198-741228	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	841418-841448	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	841417-841447	6	0.806
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	841402-841432	6	0.806
NZ_CP020979_1	1.6\|545363\|31\|NZ_CP020979\|CRISPRCasFinder	545363-545393	31	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	119514-119544	6	0.806
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP044217	Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence	110715-110745	7	0.774
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	513842-513872	7	0.774
NZ_CP020979_1	1.3\|545195\|31\|NZ_CP020979\|CRISPRCasFinder	545195-545225	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	150331-150361	7	0.774
NZ_CP020979_1	1.3\|545195\|31\|NZ_CP020979\|CRISPRCasFinder	545195-545225	31	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	81610-81640	7	0.774
NZ_CP020979_1	1.6\|545363\|31\|NZ_CP020979\|CRISPRCasFinder	545363-545393	31	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	322116-322146	7	0.774
NZ_CP020979_1	1.6\|545363\|31\|NZ_CP020979\|CRISPRCasFinder	545363-545393	31	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	23696-23726	7	0.774
NZ_CP020979_1	1.6\|545363\|31\|NZ_CP020979\|CRISPRCasFinder	545363-545393	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	135212-135242	7	0.774
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	120445-120475	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	117739-117769	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	138162-138192	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	134326-134356	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	580143-580173	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	134326-134356	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	134326-134356	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	134326-134356	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	134775-134805	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	316189-316219	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	486605-486635	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	23917-23947	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	482003-482033	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	1004464-1004494	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	23917-23947	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	428001-428031	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	2251917-2251947	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	140682-140712	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	483199-483229	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	23915-23945	8	0.742
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NC_015179	Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence	32207-32240	8	0.765
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	657714-657747	8	0.765
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614842-1614875	8	0.765
NZ_CP020979_1	1.6\|545363\|31\|NZ_CP020979\|CRISPRCasFinder	545363-545393	31	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	475100-475130	8	0.742
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	NC_027204	Sinorhizobium phage phiM12, complete genome	74902-74932	9	0.71
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	KR052482	Sinorhizobium phage phiN3, complete genome	76608-76638	9	0.71
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	KR052481	Sinorhizobium phage phiM19, complete genome	72551-72581	9	0.71
NZ_CP020979_1	1.1\|545087\|31\|NZ_CP020979\|CRISPRCasFinder	545087-545117	31	KR052480	Sinorhizobium phage phiM7, complete genome	72291-72321	9	0.71
NZ_CP020979_1	1.2\|545141\|31\|NZ_CP020979\|CRISPRCasFinder	545141-545171	31	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	114529-114559	9	0.71
NZ_CP020979_1	1.3\|545195\|31\|NZ_CP020979\|CRISPRCasFinder	545195-545225	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934511	9	0.71
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	367183-367216	9	0.735
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NZ_AP022333	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence	138043-138076	9	0.735
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	345663-345696	9	0.735
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	AF440695	Virus PhiCh1, complete genome	58189-58222	9	0.735
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NC_004084	Natrialba phage PhiCh1, complete genome	58189-58222	9	0.735
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22180	9	0.735
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116465-116498	9	0.735
NZ_CP020979_1	1.9\|545243\|40\|NZ_CP020979\|PILER-CR	545243-545282	40	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	463181-463220	9	0.775
NZ_CP020979_1	1.4\|545249\|34\|NZ_CP020979\|CRISPRCasFinder	545249-545282	34	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	486064-486097	10	0.706
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72477	11	0.676
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	MH271303	Microbacterium phage MementoMori, complete genome	20739-20772	11	0.676
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	MN813682	Microbacterium phage Matzah, complete genome	21015-21048	11	0.676
NZ_CP020979_1	1.5\|545306\|34\|NZ_CP020979\|CRISPRCasFinder	545306-545339	34	MK937591	Microbacterium phage Cinna, complete genome	21039-21072	11	0.676

1. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 5, identity: 0.839

agcgcaga---tgccggcaagacctatggcgccc	CRISPR spacer
---gcagagtctgccggcaaaacctatggcaccc	Protospacer
   *****   *********.*********.***

2. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 5, identity: 0.853

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
tcgctgggcctgaaggcgatcgtgtccggcccgc	Protospacer
 ********* *****.*************  **

3. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to CP043032 (Dermacoccus abyssi strain HZAU 226 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.853

-ctcgccgagcgcggcagccagatcagtggcggag	CRISPR spacer
actctccg-ccgcggcagcaagatcagaggcggag	Protospacer
 *** ***  ********* ******* *******

4. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

5. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

6. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

7. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

8. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

9. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

10. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

11. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

12. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

13. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

14. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

15. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

16. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

17. spacer 1.6|545363|31|NZ_CP020979|CRISPRCasFinder matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 6, identity: 0.806

gggctggtggggaccgagctcggcaagggca	CRISPR spacer
cggctggtggggaccggtctcggcaacgtcg	Protospacer
 ***************. ******** * *.

18. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
aatgacgattcaggcaagacctatggcgcca	Protospacer
*..*  *** * ******************

19. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.774

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gcattgggtgccggtgcgcaagccaacaaca	Protospacer
* . * ***************.**** ***.

20. spacer 1.3|545195|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccgggggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.****  * **

21. spacer 1.3|545195|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccgggggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.****  * **

22. spacer 1.6|545363|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

gggctggtggggaccgagctcggcaagggca	CRISPR spacer
gtgctggcggggaccgggctcggcatcgtcc	Protospacer
* *****.********.********  * *

23. spacer 1.6|545363|31|NZ_CP020979|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.774

gggctggtggggaccgagctcggcaagggca	CRISPR spacer
gtgctggcggggaccgggctcggcatcgtcc	Protospacer
* *****.********.********  * *

24. spacer 1.6|545363|31|NZ_CP020979|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 7, identity: 0.774

gggctggtggggaccgagctcggcaagggca	CRISPR spacer
gtgctggcggggaccgggctcggcatcgtcc	Protospacer
* *****.********.********  * *

25. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tccggctatgtcggcaagacctatcgcgccg	Protospacer
  **   ***.************* *****

26. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tccggctatgtcggcaagacctatcgcgccg	Protospacer
  **   ***.************* *****

27. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

28. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

29. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

30. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

31. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

32. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

33. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

34. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

35. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

36. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

37. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

38. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

39. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

40. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

41. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

42. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

43. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

44. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 8, identity: 0.742

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
tgggatcttgccggcaaggcctatggcgtcc	Protospacer
 * *    **********.*********.**

45. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NC_015179 (Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence) position: , mismatch: 8, identity: 0.765

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
aatgagggcgagaaggtgatcgagtccggcgaga	Protospacer
*    **** ************ ********.*

46. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
tggatgggccagaaattgatcgtgtccggaaagc	Protospacer
  * **********. ************* ..**

47. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagatcagtggcggag	CRISPR spacer
ttcgtcgagcgcggcagccagatcatggggctgg	Protospacer
.***.********************  **   .*

48. spacer 1.6|545363|31|NZ_CP020979|CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtggggaccgagctcggcaagggca	CRISPR spacer
agcgcgctggcggccgagctcggcaagggcg	Protospacer
.*  .* *** *.*****************.

49. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to NC_027204 (Sinorhizobium phage phiM12, complete genome) position: , mismatch: 9, identity: 0.71

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
gacgaagatgacggcaagacctatgaaacgg	Protospacer
..** ***** **************. .*

50. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.71

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
gacgaagatgacggcaagacctatgaaacgg	Protospacer
..** ***** **************. .*

51. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to KR052481 (Sinorhizobium phage phiM19, complete genome) position: , mismatch: 9, identity: 0.71

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
gacgaagatgacggcaagacctatgaaacgg	Protospacer
..** ***** **************. .*

52. spacer 1.1|545087|31|NZ_CP020979|CRISPRCasFinder matches to KR052480 (Sinorhizobium phage phiM7, complete genome) position: , mismatch: 9, identity: 0.71

agcgcagatgccggcaagacctatggcgccc	CRISPR spacer
gacgaagatgacggcaagacctatgaaacgg	Protospacer
..** ***** **************. .*

53. spacer 1.2|545141|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 9, identity: 0.71

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
cagagcggtgccggtgcgcatacctctgggg	Protospacer
 *** *************** ***   .. *

54. spacer 1.3|545195|31|NZ_CP020979|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.71

cgcatcggcgacaacgcgcgtaccgggggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc	Protospacer
**** ***************.***.

55. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
aaagcgggccagaaggtggtcgtgtccggacagt	Protospacer
* . .*************.**********  .*.

56. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 9, identity: 0.735

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
cccatcagccagaaggtgatcgtggccagcgtgt	Protospacer
 *  * .***************** **.*** *.

57. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
ttgcgcggccagaaggtgaccgtgtccagcctgt	Protospacer
 .**  *************.*******.**  *.

58. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to AF440695 (Virus PhiCh1, complete genome) position: , mismatch: 9, identity: 0.735

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
cagctggggcagacggtgatcgtgtcgcgaaggg	Protospacer
  ****** **** ************  * .**

59. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NC_004084 (Natrialba phage PhiCh1, complete genome) position: , mismatch: 9, identity: 0.735

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
cagctggggcagacggtgatcgtgtcgcgaaggg	Protospacer
  ****** **** ************  * .**

60. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgccgagcgcggcagccagatcag-tggcggag	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga-	Protospacer
 .**********.****** ****** . *..**

61. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgccgagcgcggcagccagatcag-tggcggag	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga-	Protospacer
 .**********.****** ****** . *..**

62. spacer 1.9|545243|40|NZ_CP020979|PILER-CR matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 9, identity: 0.775

tcgatcacgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
cagcgctcgctgggcctgaaggcgatcgtgtccggcccgc	Protospacer
. *  * ********* *****.*************  **

63. spacer 1.4|545249|34|NZ_CP020979|CRISPRCasFinder matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

acgctgggccagaaggtgatcgtgtccggcgggc	CRISPR spacer
aaagcgggccagatggtggtcgtgtccggacagt	Protospacer
* . .******** ****.**********  .*.

64. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggag	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * .

65. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggag	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc	Protospacer
**************** ** ****  .  *  .

66. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggag	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc	Protospacer
**************** ** ****  .  *  .

67. spacer 1.5|545306|34|NZ_CP020979|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggag	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc	Protospacer
**************** ** ****  .  *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

474937 : 540389

Bacillus_phage(25.0%)

protease,tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007968272.1\|474937_475489_+\|tail	phage tail protein	NA	NA	NA	NA
WP_099802616.1\|475557_476085_+\|tail	phage tail protein	A0A0U4JYA4	Arthrobacter_phage	1.6e-10	30.1
WP_007968268.1\|476145_476682_+\|tail	phage tail protein	NA	NA	NA	NA
WP_099802617.1\|476686_477244_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_099802618.1\|477262_477550_-	hypothetical protein	NA	NA	NA	NA
WP_007968264.1\|477933_478728_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.9e-08	27.2
WP_003482308.1\|478727_479477_+	ABC transporter permease	NA	NA	NA	NA
WP_022560464.1\|479488_480034_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_003482305.1\|480030_480693_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_022560466.1\|480682_480973_+	STAS domain-containing protein	NA	NA	NA	NA
WP_099802619.1\|480983_482039_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_022560468.1\|482170_482551_-	hypothetical protein	NA	NA	NA	NA
WP_099802620.1\|482554_483100_-	glutathione peroxidase	Q70H87	Fowlpox_virus	2.0e-16	33.9
WP_099802889.1\|483253_483643_-	hypothetical protein	NA	NA	NA	NA
WP_099802890.1\|483861_485442_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_033481426.1\|486001_486232_+	hypothetical protein	NA	NA	NA	NA
WP_007968253.1\|486395_487016_+	glutathione S-transferase	NA	NA	NA	NA
WP_007968252.1\|487154_487535_+	hypothetical protein	NA	NA	NA	NA
WP_007971149.1\|487751_489167_+	amino acid permease	NA	NA	NA	NA
WP_099802621.1\|489396_491871_-	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_057661791.1\|492722_493112_-	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_099802622.1\|493232_494981_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.3e-15	31.6
WP_089096453.1\|495072_496284_-	carbohydrate diacid regulon transcriptional regulator CdaR	NA	NA	NA	NA
WP_145958232.1\|497969_498401_+	hypothetical protein	NA	NA	NA	NA
WP_099802623.1\|501132_502413_-	peptidase M19	NA	NA	NA	NA
WP_022560498.1\|502700_503021_-	hypothetical protein	NA	NA	NA	NA
WP_007968235.1\|503139_504306_-	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_005912402.1\|504570_505527_+	TerC family protein	K4F9T9	Cronobacter_phage	1.3e-31	31.4
WP_099802624.1\|505875_506661_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_099802625.1\|506777_507872_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_099802626.1\|508104_510405_-	TonB-dependent receptor	NA	NA	NA	NA
WP_099802627.1\|510597_511455_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_099802628.1\|511616_512957_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_022560505.1\|514535_516260_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_007968218.1\|516285_516723_-	ribonuclease P protein component	NA	NA	NA	NA
WP_002805908.1\|516761_516902_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_007968215.1\|517144_518473_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_005912436.1\|518749_519850_+	DNA polymerase III subunit beta	A0A0A8IL17	Aurantimonas_phage	1.1e-53	37.1
WP_099803334.1\|520893_522000_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_089094340.1\|522114_524559_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.6e-113	34.7
WP_022557777.1\|524626_525463_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005912440.1\|525647_526454_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_007968206.1\|526731_527925_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005912443.1\|528077_528749_+	energy transducer TonB	NA	NA	NA	NA
WP_005912445.1\|528834_529596_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_005912447.1\|529642_530065_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005912449.1\|530068_530482_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_099802892.1\|531038_531446_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_007968197.1\|531698_532466_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_099802632.1\|532473_532743_-	hypothetical protein	NA	NA	NA	NA
WP_099802633.1\|532817_534278_-	cardiolipin synthase	NA	NA	NA	NA
WP_099802634.1\|534578_535304_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_099802635.1\|535352_535718_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_099802636.1\|535841_536969_-	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_099802637.1\|537169_537871_-	2OG-Fe(II) oxygenase	E3SK61	Synechococcus_phage	1.0e-17	47.2
WP_099802638.1\|538137_539478_-	outer membrane protein transport protein	NA	NA	NA	NA
WP_099802639.1\|539696_540389_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

1707256 : 1786365

Stenotrophomonas_phage(46.15%)

tail,terminase,integrase,plate,transposase,protease,capsid,portal,holin

attL 1701117:1701134|attR 1742592:1742609

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1701117:1701134	attL	NA	NA	NA	NA
WP_099801261.1\|1707256_1709338_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_099801262.1\|1709506_1711666_+	S46 family peptidase	NA	NA	NA	NA
WP_007968929.1\|1711759_1712404_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_099801263.1\|1712733_1714032_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_089112971.1\|1714099_1715182_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_007973712.1\|1715395_1716142_+	CvpA family protein	NA	NA	NA	NA
WP_003483730.1\|1716172_1717639_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.1e-85	39.9
WP_057661834.1\|1717834_1718659_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_099801264.1\|1719236_1720490_+	peptidase	NA	NA	NA	NA
WP_099801265.1\|1720625_1721045_+	hypothetical protein	NA	NA	NA	NA
WP_089094861.1\|1721233_1721977_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_007968943.1\|1722376_1722919_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_099801266.1\|1722899_1724036_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_007973706.1\|1724254_1725781_-	exopolyphosphatase	NA	NA	NA	NA
WP_003483747.1\|1725953_1728056_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_011050669.1\|1728168_1729512_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	6.5e-29	33.3
WP_003483753.1\|1729569_1730259_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	1.0e-33	35.7
WP_099802746.1\|1730441_1732088_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_089141094.1\|1732237_1732546_+	glutaredoxin 3	A0A2L0UZG6	Agrobacterium_phage	3.6e-07	43.2
WP_007968963.1\|1732542_1732938_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003483762.1\|1733164_1734172_+	isocitrate dehydrogenase	NA	NA	NA	NA
WP_089141096.1\|1734316_1735078_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_099801267.1\|1735798_1736137_+	hypothetical protein	NA	NA	NA	NA
WP_099801268.1\|1736140_1737103_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	5.4e-94	56.2
WP_099801270.1\|1737754_1737955_-	hypothetical protein	NA	NA	NA	NA
WP_099801271.1\|1738020_1738245_-	hypothetical protein	NA	NA	NA	NA
WP_099801272.1\|1738241_1738514_-	hypothetical protein	NA	NA	NA	NA
WP_014091203.1\|1738506_1738689_-	hypothetical protein	NA	NA	NA	NA
WP_099801273.1\|1738681_1739107_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	4.8e-18	45.2
WP_099801274.1\|1739184_1739457_-	hypothetical protein	NA	NA	NA	NA
WP_099802747.1\|1739456_1739729_-	hypothetical protein	NA	NA	NA	NA
WP_099801275.1\|1739740_1739959_-	hypothetical protein	NA	NA	NA	NA
WP_011345585.1\|1740555_1741782_-\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_008572770.1\|1744328_1744541_-	hypothetical protein	NA	NA	NA	NA
1742592:1742609	attR	NA	NA	NA	NA
WP_099770856.1\|1744537_1744816_-	hypothetical protein	NA	NA	NA	NA
WP_008572766.1\|1744826_1745147_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
WP_008572763.1\|1745149_1745407_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	6.6e-07	44.6
WP_099801276.1\|1745477_1745915_+	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	1.9e-09	32.9
WP_133125215.1\|1746144_1746621_-	hypothetical protein	NA	NA	NA	NA
WP_099801277.1\|1746708_1747695_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	1.8e-89	52.9
WP_078584030.1\|1747691_1748093_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	7.1e-40	62.9
WP_005922203.1\|1751004_1751118_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_099801278.1\|1751126_1751429_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	1.4e-24	67.1
WP_099801279.1\|1751474_1751984_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.4e-69	76.3
WP_099801280.1\|1752013_1753180_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	7.9e-132	62.8
WP_099801281.1\|1753191_1753551_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	1.7e-37	66.1
WP_099801282.1\|1753547_1754111_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	1.3e-26	47.5
WP_039586312.1\|1754253_1754928_-	hypothetical protein	NA	NA	NA	NA
WP_039586315.1\|1754930_1755224_-	hypothetical protein	NA	NA	NA	NA
WP_099801283.1\|1755296_1757096_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	1.1e-84	38.8
WP_039586319.1\|1757108_1757654_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.1e-51	56.0
WP_099801284.1\|1758612_1760151_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_099801285.1\|1760332_1760782_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	1.3e-37	56.1
WP_099801286.1\|1760769_1761189_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	2.6e-40	65.2
WP_099801287.1\|1761185_1761680_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	3.2e-26	51.7
WP_099801288.1\|1761679_1762321_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	1.3e-51	63.9
WP_005922189.1\|1762317_1762593_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
WP_099801289.1\|1762585_1762942_-	hypothetical protein	V9IQG9	Stenotrophomonas_phage	2.3e-21	55.3
WP_039586330.1\|1762946_1763156_-\|tail	tail protein	K4PAW7	Burkholderia_phage	2.7e-14	58.0
WP_099801290.1\|1763720_1764440_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	1.1e-67	61.6
WP_099801291.1\|1764443_1765463_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	2.7e-136	70.9
WP_099801292.1\|1765509_1766352_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.0e-68	53.6
WP_099801293.1\|1766473_1768258_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	1.4e-268	76.1
WP_099801294.1\|1768257_1769262_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	4.0e-140	71.3
WP_078560558.1\|1769287_1769533_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	2.8e-15	53.8
WP_099801295.1\|1769450_1770152_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	3.8e-105	76.5
WP_099801296.1\|1770322_1770739_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_099802748.1\|1771747_1772650_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_011345585.1\|1772847_1774074_+\|transposase	IS256-like element ISXax1 family transposase	A0A218MNI5	uncultured_virus	2.2e-52	50.3
WP_099801297.1\|1776825_1778112_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	5.4e-81	42.4
WP_099801298.1\|1778111_1778591_-	peptidase S24	A0A218MND2	uncultured_virus	1.2e-12	36.4
WP_099801299.1\|1778702_1779407_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_158526027.1\|1779581_1780139_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158526028.1\|1780214_1780514_+	hypothetical protein	NA	NA	NA	NA
WP_099801302.1\|1781143_1782412_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_099801303.1\|1782941_1784234_+	trigger factor	NA	NA	NA	NA
WP_002806026.1\|1784326_1784953_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.0e-56	57.4
WP_003483788.1\|1785078_1786365_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-137	59.9

DBSCAN-SWA_3

2230487 : 2251057

Pseudomonas_phage(47.06%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099801461.1\|2230487_2230994_-	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	1.0e-35	45.8
WP_099801462.1\|2230997_2231402_-	hypothetical protein	NA	NA	NA	NA
WP_099801463.1\|2231629_2232526_-	hypothetical protein	L7P7Y9	Pseudomonas_phage	4.3e-85	53.5
WP_099801464.1\|2232560_2232965_-	hypothetical protein	A0A0M4TU84	Ralstonia_phage	2.9e-17	43.7
WP_099801465.1\|2233005_2234121_-	hypothetical protein	J9SH47	Pseudomonas_phage	2.6e-84	51.3
WP_099801466.1\|2234396_2234930_-	hypothetical protein	A0A2H4J9E5	uncultured_Caudovirales_phage	1.5e-08	30.4
WP_158526029.1\|2234926_2235565_-	hypothetical protein	J9STS2	Pseudomonas_phage	3.8e-43	45.2
WP_099801468.1\|2235557_2237144_-	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	7.2e-160	59.4
WP_099802759.1\|2237137_2238679_-	hypothetical protein	A0A2H4JF57	uncultured_Caudovirales_phage	6.5e-158	59.3
WP_099801469.1\|2238699_2239266_-	DUF3486 family protein	J9SH37	Pseudomonas_phage	2.0e-24	47.8
WP_039586667.1\|2239270_2239576_-	hypothetical protein	A0A2P9JZI6	Alteromonadaceae_phage	3.9e-06	41.1
WP_099801470.1\|2239575_2239833_-	hypothetical protein	NA	NA	NA	NA
WP_099801471.1\|2239829_2240063_-	hypothetical protein	NA	NA	NA	NA
WP_145958254.1\|2240255_2240945_-	hypothetical protein	NA	NA	NA	NA
WP_099801473.1\|2240935_2241658_-	lytic transglycosylase domain-containing protein	A0A2P9JZI1	Alteromonadaceae_phage	3.5e-37	42.1
WP_099801474.1\|2241654_2241972_-	hypothetical protein	NA	NA	NA	NA
WP_099801475.1\|2242162_2242504_-	hypothetical protein	NA	NA	NA	NA
WP_099801476.1\|2242506_2242935_-	transcriptional regulator	A0A2H4J0B0	uncultured_Caudovirales_phage	1.7e-07	37.9
WP_145958255.1\|2242931_2243438_-	hypothetical protein	J9RWB3	Pseudomonas_phage	2.9e-22	43.0
WP_099801478.1\|2243563_2244154_+	hypothetical protein	NA	NA	NA	NA
WP_099829890.1\|2244237_2244540_-	hypothetical protein	NA	NA	NA	NA
WP_145958256.1\|2244536_2244815_-	hypothetical protein	NA	NA	NA	NA
WP_099801481.1\|2244814_2245237_-	regulatory protein GemA	H1ZZD1	Pseudomonas_virus	9.2e-22	44.1
WP_099801482.1\|2245239_2245473_-	hypothetical protein	NA	NA	NA	NA
WP_145958257.1\|2245459_2245762_-	hypothetical protein	NA	NA	NA	NA
WP_099801484.1\|2245788_2246397_-	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.4e-71	69.3
WP_145958258.1\|2246455_2247076_-	hypothetical protein	NA	NA	NA	NA
WP_114281422.1\|2247072_2247306_-	hypothetical protein	NA	NA	NA	NA
WP_145958378.1\|2247359_2247653_-	hypothetical protein	NA	NA	NA	NA
WP_099801488.1\|2247636_2247834_-	hypothetical protein	NA	NA	NA	NA
WP_158526030.1\|2247833_2248805_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	4.7e-53	37.6
WP_099801490.1\|2249056_2251057_-	hypothetical protein	A0A1B0T6H2	Thiobacimonas_phage	1.3e-113	40.0

DBSCAN-SWA_4

2603602 : 2612739

Micromonas_pusilla_virus(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007966769.1\|2603602_2605279_+	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	1.9e-41	29.4
WP_099801623.1\|2605366_2606008_+	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_003481871.1\|2606180_2607215_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.1e-114	61.3
WP_007966764.1\|2607527_2608016_+	recombination regulator RecX	NA	NA	NA	NA
WP_099801624.1\|2608117_2610766_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-84	40.0
WP_003481884.1\|2610905_2611118_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.3e-13	76.5
WP_099800951.1\|2611589_2612739_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.7e-98	63.3

DBSCAN-SWA_5

3333430 : 3341325

EBPR_podovirus(16.67%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099801847.1\|3333430_3334756_-\|terminase	PBSX family phage terminase large subunit	F8TUR5	EBPR_podovirus	2.5e-166	66.2
WP_145958275.1\|3334727_3335072_-	hypothetical protein	X2CY93	Brucella_phage	2.5e-17	51.1
WP_099801849.1\|3335116_3335506_-	hypothetical protein	NA	NA	NA	NA
WP_099802804.1\|3335498_3335960_-	hypothetical protein	NA	NA	NA	NA
WP_089095871.1\|3336005_3336221_-	hypothetical protein	NA	NA	NA	NA
WP_099801850.1\|3336217_3336544_-	hypothetical protein	NA	NA	NA	NA
WP_099801851.1\|3336543_3336981_-	lysozyme	A0A088FRS5	Escherichia_phage	8.0e-37	52.4
WP_099801853.1\|3337320_3338019_-	hypothetical protein	C8CLH7	Xylella_phage	1.1e-48	44.7
WP_099801854.1\|3338011_3338245_-	DUF3310 domain-containing protein	NA	NA	NA	NA
WP_099801855.1\|3338244_3338583_-	DUF1064 domain-containing protein	T1SA23	Salmonella_phage	1.4e-41	71.2
WP_099801856.1\|3338579_3339047_-	hypothetical protein	NA	NA	NA	NA
WP_158526039.1\|3339043_3339208_-	hypothetical protein	NA	NA	NA	NA
WP_099801857.1\|3339407_3340109_-	hypothetical protein	NA	NA	NA	NA
WP_099801858.1\|3340105_3340351_-	hypothetical protein	NA	NA	NA	NA
WP_099801859.1\|3340347_3340635_-	hypothetical protein	NA	NA	NA	NA
WP_145958277.1\|3340631_3340916_-	hypothetical protein	NA	NA	NA	NA
WP_158526040.1\|3340986_3341325_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	8.1e-13	39.4

DBSCAN-SWA_6

4678094 : 4686121

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099802311.1\|4678094_4679441_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.3e-32	27.1
WP_011052370.1\|4679488_4680892_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.5e-48	30.0
WP_099802312.1\|4681166_4682333_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	1.9e-117	58.1
WP_099802313.1\|4682673_4683573_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.0e-26	36.3
WP_099802314.1\|4683569_4684127_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-45	48.1
WP_031424432.1\|4684123_4685011_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-94	57.8
WP_099802315.1\|4685065_4686121_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.3e-84	48.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection