CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018642	Salmonella enterica subsp. enterica serovar Enteritidis strain 74-1357 chromosome, complete genome	2 crisprs	cas3,DinG,DEDDh,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	0	7	9	0
NZ_CP018643	Salmonella enterica subsp. enterica serovar Enteritidis strain 74-1357 plasmid pSE74-1357, complete sequence	0 crisprs	cas14i,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018642_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018642_1

3406720-3407236

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRT

8 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP018642_1

>merge|NZ_CP018642|1|3406720-3407236|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACTGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTCGTGTTCCCCGCGCCAGCGGGGATAAACTGCCGTGCCTGTCCAGGACAAATTGCCGATTATTGTGTTCCCCGCGCCAGCGGGGATAAACTGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATGTGACAGTCTGATTTTTATAGCGCATGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGACATTCTCGCTAGTCACGGTCATGTCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCGGTGTTCCCCTCGCCAGCGGGGATAAACCGAGTTACTGATGCAGACTGCGGATCTTAATCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP018642|1|1|3406720-3407175|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACTG	AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGTGACAGTCTGATTTTTATAGCGCATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP018642|1|1|3406720-3407236|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACTG	AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGTGACAGTCTGATTTTTATAGCGCATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP018642|1|1|3406720-3407234|CRT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCTGCCGGTCTGTGCTGTTGTCGTCAATAATCA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGCATGTGACAGTCTGATTTTTATAGCGCATGA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAAC	CGAGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018642.1\|WP_000210932.1\|3409005_3410805_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP018642.1\|WP_000368579.1\|3417512_3419069_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP018642.1\|WP_001079646.1\|3395265_3395802_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP018642.1\|WP_000039870.1\|3412618_3413353_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP018642.1\|WP_000117945.1\|3419065_3419620_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018642.1\|WP_001207998.1\|3407334_3408132_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP018642.1\|WP_000108313.1\|3408219_3408582_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP018642.1\|WP_001044459.1\|3396809_3397583_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP018642.1\|WP_000178270.1\|3396283_3396790_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP018642.1\|WP_000832393.1\|3395798_3396269_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP018642.1\|WP_000210863.1\|3402597_3404235_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP018642.1\|WP_000206417.1\|3419633_3420692_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP018642.1\|WP_000029737.1\|3414837_3417501_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018642.1\|WP_099826021.1\|3397595_3400295_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP018642.1\|WP_001290672.1\|3410804_3412517_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP018642.1\|WP_000036734.1\|3404317_3405616_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP018642.1\|WP_001199961.1\|3405751_3406423_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP018642.1\|WP_000210451.1\|3401569_3402370_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP018642.1\|WP_000842512.1\|3400374_3400962_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP018642.1\|WP_001145541.1\|3413440_3414394_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP018642.1\|WP_000210932.1\|3409005_3410805_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP018642.1\|WP_000368579.1\|3417512_3419069_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP018642.1\|WP_001079646.1\|3395265_3395802_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
NZ_CP018642.1\|WP_000039870.1\|3412618_3413353_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP018642.1\|WP_000117945.1\|3419065_3419620_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP018642.1\|WP_001207998.1\|3407334_3408132_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
NZ_CP018642.1\|WP_000108313.1\|3408219_3408582_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP018642.1\|WP_001044459.1\|3396809_3397583_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP018642.1\|WP_000178270.1\|3396283_3396790_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP018642.1\|WP_000832393.1\|3395798_3396269_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
NZ_CP018642.1\|WP_000210863.1\|3402597_3404235_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP018642.1\|WP_000206417.1\|3419633_3420692_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP018642.1\|WP_000029737.1\|3414837_3417501_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP018642.1\|WP_099826021.1\|3397595_3400295_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP018642.1\|WP_001290672.1\|3410804_3412517_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP018642.1\|WP_000036734.1\|3404317_3405616_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP018642.1\|WP_001199961.1\|3405751_3406423_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP018642.1\|WP_000210451.1\|3401569_3402370_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP018642.1\|WP_000842512.1\|3400374_3400962_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP018642.1\|WP_001145541.1\|3413440_3414394_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP018642.1|WP_001199961.1|3405751_3406423_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP018642.1|WP_000036734.1|3404317_3405616_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP018642.1|WP_000210863.1|3402597_3404235_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP018642.1|WP_000210451.1|3401569_3402370_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP018642.1|WP_000842512.1|3400374_3400962_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP018642.1|WP_099826021.1|3397595_3400295_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKECYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP018642.1|WP_001044459.1|3396809_3397583_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP018642.1|WP_000178270.1|3396283_3396790_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP018642.1|WP_000832393.1|3395798_3396269_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP018642.1|WP_001079646.1|3395265_3395802_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP018642.1|WP_001207998.1|3407334_3408132_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP018642.1|WP_000108313.1|3408219_3408582_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP018642.1|WP_000210932.1|3409005_3410805_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP018642.1|WP_001290672.1|3410804_3412517_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP018642.1|WP_000039870.1|3412618_3413353_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP018642.1|WP_001145541.1|3413440_3414394_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP018642.1|WP_000029737.1|3414837_3417501_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP018642.1|WP_000368579.1|3417512_3419069_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP018642.1|WP_000117945.1|3419065_3419620_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP018642.1|WP_000206417.1|3419633_3420692_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA

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Crispr_ID: NZ_CP018642_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018642_2

3423388-3423782

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP018642_2

>merge|NZ_CP018642|2|3423388-3423782|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATATATGGCGCTCACGCGCATGAGCATTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGGCAAATTCATCCGCCGCTGACCACTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAACTGGTTTAGCTATCGCTGCCGGGGCTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTGCTCAGATTGGGAATTTGACCAGCGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACGAGGGCCCCCTTATTGGGTCGGGCAGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGGTTGCATAGATGACACGCTTATAAATAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP018642|2|2|3423388-3423721|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCTCAGATTGGGAATTTGACCAGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP018642|2|2|3423388-3423782|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCTCAGATTGGGAATTTGACCAGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP018642|2|2|3423388-3423782|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCTCAGATTGGGAATTTGACCAGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018642.1\|WP_000741653.1\|3428937_3429648_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP018642.1\|WP_000117945.1\|3419065_3419620_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018642.1\|WP_000134246.1\|3430123_3431173_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP018642.1\|WP_000039870.1\|3412618_3413353_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP018642.1\|WP_000517480.1\|3428607_3428919_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP018642.1\|WP_001221538.1\|3431153_3431915_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP018642.1\|WP_001173663.1\|3427437_3428043_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP018642.1\|WP_000490481.1\|3423796_3424843_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP018642.1\|WP_001092251.1\|3426011_3427451_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP018642.1\|WP_000206417.1\|3419633_3420692_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP018642.1\|WP_000144830.1\|3422077_3422998_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP018642.1\|WP_001518648.1\|3422997_3423291_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP018642.1\|WP_001145541.1\|3413440_3414394_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP018642.1\|WP_000281483.1\|3421430_3422081_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP018642.1\|WP_001118109.1\|3428060_3428417_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP018642.1\|WP_000029737.1\|3414837_3417501_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018642.1\|WP_001219253.1\|3429647_3430127_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP018642.1\|WP_000372384.1\|3425093_3426002_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP018642.1\|WP_000368579.1\|3417512_3419069_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP018642.1\|WP_000085115.1\|3420702_3421449_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776

Protein	Function_ID	Function_description	E-value
NZ_CP018642.1\|WP_000741653.1\|3428937_3429648_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP018642.1\|WP_000117945.1\|3419065_3419620_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP018642.1\|WP_000134246.1\|3430123_3431173_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP018642.1\|WP_000039870.1\|3412618_3413353_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP018642.1\|WP_000517480.1\|3428607_3428919_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP018642.1\|WP_001221538.1\|3431153_3431915_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP018642.1\|WP_001173663.1\|3427437_3428043_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP018642.1\|WP_000490481.1\|3423796_3424843_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP018642.1\|WP_001092251.1\|3426011_3427451_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP018642.1\|WP_000206417.1\|3419633_3420692_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP018642.1\|WP_000144830.1\|3422077_3422998_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
NZ_CP018642.1\|WP_001518648.1\|3422997_3423291_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP018642.1\|WP_001145541.1\|3413440_3414394_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP018642.1\|WP_000281483.1\|3421430_3422081_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP018642.1\|WP_001118109.1\|3428060_3428417_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP018642.1\|WP_000029737.1\|3414837_3417501_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP018642.1\|WP_001219253.1\|3429647_3430127_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NZ_CP018642.1\|WP_000372384.1\|3425093_3426002_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP018642.1\|WP_000368579.1\|3417512_3419069_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP018642.1\|WP_000085115.1\|3420702_3421449_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48

>NZ_CP018642.1|WP_001518648.1|3422997_3423291_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP018642.1|WP_000144830.1|3422077_3422998_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP018642.1|WP_000281483.1|3421430_3422081_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP018642.1|WP_000085115.1|3420702_3421449_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP018642.1|WP_000206417.1|3419633_3420692_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP018642.1|WP_000117945.1|3419065_3419620_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP018642.1|WP_000368579.1|3417512_3419069_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP018642.1|WP_000029737.1|3414837_3417501_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP018642.1|WP_001145541.1|3413440_3414394_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP018642.1|WP_000039870.1|3412618_3413353_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP018642.1|WP_000490481.1|3423796_3424843_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP018642.1|WP_000372384.1|3425093_3426002_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP018642.1|WP_001092251.1|3426011_3427451_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP018642.1|WP_001173663.1|3427437_3428043_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP018642.1|WP_001118109.1|3428060_3428417_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP018642.1|WP_000517480.1|3428607_3428919_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP018642.1|WP_000741653.1|3428937_3429648_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP018642.1|WP_001219253.1|3429647_3430127_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP018642.1|WP_000134246.1|3430123_3431173_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP018642.1|WP_001221538.1|3431153_3431915_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018642_1	1.3\|3406871\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder	3406871-3406902	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
NZ_CP018642_1	1.3\|3406871\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder	3406871-3406902	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
NZ_CP018642_1	1.6\|3407054\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder	3407054-3407085	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
NZ_CP018642_1	1.14\|3407052\|34\|NZ_CP018642\|CRT	3407052-3407085	34	MN694003	Marine virus AFVG_250M677, complete genome	17627-17660	8	0.765
NZ_CP018642_1	1.1\|3406749\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder	3406749-3406780	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
NZ_CP018642_1	1.3\|3406871\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder	3406871-3406902	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719
NZ_CP018642_2	2.1\|3423417\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder,CRT	3423417-3423448	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
NZ_CP018642_2	2.4\|3423600\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder,CRT	3423600-3423631	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
NZ_CP018642_2	2.4\|3423600\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder,CRT	3423600-3423631	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
NZ_CP018642_2	2.4\|3423600\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder,CRT	3423600-3423631	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
NZ_CP018642_2	2.4\|3423600\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder,CRT	3423600-3423631	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
NZ_CP018642_2	2.6\|3423722\|32\|NZ_CP018642\|CRISPRCasFinder,CRT	3423722-3423753	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP018642_1	1.1\|3406749\|32\|NZ_CP018642\|PILER-CR,CRISPRCasFinder	3406749-3406780	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688

1. spacer 1.3|3406871|32|NZ_CP018642|PILER-CR,CRISPRCasFinder matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

2. spacer 1.3|3406871|32|NZ_CP018642|PILER-CR,CRISPRCasFinder matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
aatctgctctgtgctgttgtagtcaattataa	Protospacer
   *.* ************* ****** ** *

3. spacer 1.6|3407054|32|NZ_CP018642|PILER-CR,CRISPRCasFinder matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cggtcgcagcctggcctgttgccgtagaatcg	CRISPR spacer
cgatcgcagcctgggctgttgccgtgctcgcc	Protospacer
**.*********** **********.    *

4. spacer 1.14|3407052|34|NZ_CP018642|CRT matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.765

cgcggtcgcagcctggcctgttgccgtagaatcg	CRISPR spacer
cgcgatcgcagcctgggctgttgccgtgctcgcc	Protospacer
****.*********** **********.    *

5. spacer 1.1|3406749|32|NZ_CP018642|PILER-CR,CRISPRCasFinder matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

aggatttcgccgcgctgttggcctccagattc	CRISPR spacer
cagggtcgaccgcgctgtcgccctccagattc	Protospacer
 .*. *. .*********.* ***********

6. spacer 1.3|3406871|32|NZ_CP018642|PILER-CR,CRISPRCasFinder matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

ctgccggtctgtgctgttgtcgtcaataatca	CRISPR spacer
tttggtgtctgtgccgttttcgtcaataagct	Protospacer
.*    ********.*** ********** *

7. spacer 2.1|3423417|32|NZ_CP018642|PILER-CR,CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

aatatatggcgctcacgcgcatgagcattctc	CRISPR spacer
acgcaatggcgctgacgcgcatgatcatttcg	Protospacer
*    ******** ********** ****..

8. spacer 2.4|3423600|32|NZ_CP018642|PILER-CR,CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

9. spacer 2.4|3423600|32|NZ_CP018642|PILER-CR,CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

10. spacer 2.4|3423600|32|NZ_CP018642|PILER-CR,CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

11. spacer 2.4|3423600|32|NZ_CP018642|PILER-CR,CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

gattgctcagattgggaatttgaccagcggcc	CRISPR spacer
agtcgctcagattgggaatttgtcaagatgta	Protospacer
..*.****************** * **  *.

12. spacer 2.6|3423722|32|NZ_CP018642|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

gttgggttgcatagatgacacgcttataaata	CRISPR spacer
gaattatggcatagatgacatgattataaatt	Protospacer
*    .* ************.* ********

13. spacer 1.1|3406749|32|NZ_CP018642|PILER-CR,CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

aggatttcgccgcgctgttggcctccagattc	CRISPR spacer
gggatatcgccgcgctgatggcctatgaccac	Protospacer
.**** *********** ****** ... . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

233269 : 239883

Escherichia_phage(57.14%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001676916.1\|233269_233599_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.5e-23	51.7
WP_001227859.1\|233871_234339_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
WP_085981757.1\|234723_234879_+	DUF1391 family protein	M4QQ57	Salicola_phage	2.6e-06	48.9
WP_069057667.1\|234986_235508_-	hypothetical protein	NA	NA	NA	NA
WP_000560208.1\|235945_236167_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
WP_000800272.1\|236251_236569_+	hypothetical protein	NA	NA	NA	NA
WP_001676915.1\|236596_237214_+	exodeoxyribonuclease	A0A088CD28	Shigella_phage	2.5e-36	41.9
WP_001156217.1\|237530_238466_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
WP_000123686.1\|238509_239883_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0

DBSCAN-SWA_2

431180 : 478998

Enterobacteria_phage(30.0%)

tail,lysis,integrase,protease,holin

attL 459513:459542|attR 479134:479163

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984498.1\|431180_432062_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001091237.1\|432256_434305_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000431401.1\|434324_435011_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_000145727.1\|435108_435693_-	GAF domain-containing protein	NA	NA	NA	NA
WP_001207294.1\|435734_437018_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_157762879.1\|436986_439620_+	PqiB family protein	NA	NA	NA	NA
WP_001531515.1\|439697_441137_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_000978525.1\|441251_441491_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457838.1\|441601_441793_+	YebW family protein	NA	NA	NA	NA
WP_000986173.1\|441811_442462_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	7.2e-58	50.9
WP_001134856.1\|442685_442850_-	membrane protein	NA	NA	NA	NA
WP_000182071.1\|443134_443857_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_000422882.1\|444540_444936_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
WP_000030934.1\|445265_445742_+	hypothetical protein	NA	NA	NA	NA
WP_001025515.1\|446114_446534_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001576019.1\|446906_447176_+	hypothetical protein	B6SCX2	Bacteriophage	3.1e-07	47.9
WP_001576018.1\|447341_447482_+	hypothetical protein	NA	NA	NA	NA
WP_001233445.1\|450619_451534_+	DMT family transporter	NA	NA	NA	NA
WP_000480735.1\|451666_451825_+	hypothetical protein	NA	NA	NA	NA
WP_000848072.1\|451834_452449_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_000457876.1\|453583_453709_-	hypothetical protein	NA	NA	NA	NA
WP_012543349.1\|454277_454478_+	phage encoded PagK	NA	NA	NA	NA
WP_000348541.1\|457179_457671_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.1e-42	56.2
WP_001576014.1\|457725_457914_+	hypothetical protein	NA	NA	NA	NA
WP_000789530.1\|457978_458146_+	lytic enzyme	NA	NA	NA	NA
WP_001050883.1\|458402_458936_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_074440854.1\|459002_459386_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	2.7e-12	37.4
459513:459542	attL	NA	NA	NA	NA
WP_001536069.1\|460330_461131_+	hypothetical protein	NA	NA	NA	NA
WP_099825807.1\|461610_462333_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_072100756.1\|462883_463747_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
WP_001152416.1\|466387_467083_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
WP_000877926.1\|467172_467706_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001541990.1\|468600_469080_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000984586.1\|469097_469550_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001574216.1\|469533_469863_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001574215.1\|470138_470825_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_000798708.1\|471185_471635_+	hypothetical protein	NA	NA	NA	NA
WP_001574213.1\|472008_472533_-	hypothetical protein	NA	NA	NA	NA
WP_001097218.1\|472629_473319_-	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-60	54.9
WP_000784710.1\|473448_473676_-	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
WP_000940753.1\|473672_474272_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
WP_000972675.1\|474335_474641_-	hypothetical protein	NA	NA	NA	NA
WP_001237395.1\|475272_477252_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_001575998.1\|477665_477944_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
WP_000087636.1\|477918_478998_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
479134:479163	attR	NA	NA	NA	NA

DBSCAN-SWA_3

651391 : 692083

Salmonella_phage(28.57%)

protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938186.1\|651391_652072_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.2e-81	71.0
WP_000374046.1\|652690_653350_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904449.1\|653436_653766_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|653762_654044_-	acylphosphatase	NA	NA	NA	NA
WP_000548080.1\|654092_654872_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859416.1\|654897_655446_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140478.1\|655660_656872_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|656929_657247_+	heat shock protein HspQ	NA	NA	NA	NA
WP_000975204.1\|657291_657708_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|657878_658541_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|658635_659094_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420505.1\|659129_661184_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_001261222.1\|661307_661754_+	YccF domain-containing protein	NA	NA	NA	NA
WP_069057544.1\|661772_663926_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|663912_664518_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288733.1\|664734_665244_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001674965.1\|665600_666653_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|666724_667177_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156448.1\|667362_669123_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|669191_669710_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|669809_669977_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|670232_670796_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433414.1\|670792_672433_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333139.1\|672437_673691_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|673705_675613_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086485.1\|675625_677734_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224079.1\|677832_678942_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001574119.1\|678938_679481_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|679646_680657_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193790.1\|680864_683477_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
WP_000497441.1\|683903_684095_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_031603423.1\|685037_685337_+	hypothetical protein	NA	NA	NA	NA
WP_000334547.1\|685405_686032_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001674638.1\|686679_687648_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
WP_072100753.1\|687873_688122_+\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.1e-18	66.2
WP_000143167.1\|688125_688707_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_000583382.1\|688706_690416_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
WP_099825831.1\|690412_691039_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	1.6e-91	71.2
WP_000274547.1\|691022_691652_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.6e-75	65.9
WP_001676370.1\|691672_692083_+	enterohemolysin	H6WRX0	Salmonella_phage	5.0e-33	100.0

DBSCAN-SWA_4

763355 : 770668

Ralstonia_phage(16.67%)

protease,integrase

attL 758152:758166|attR 769404:769418

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
758152:758166	attL	NA	NA	NA	NA
WP_001539594.1\|763355_763733_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|763894_764092_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|764304_766581_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|766611_766932_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|767255_767477_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125875.1\|767606_769553_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
769404:769418	attR	NA	NA	NA	NA
WP_001201751.1\|769549_770668_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_5

3616967 : 3669356

Salmonella_phage(34.78%)

tail,tRNA,lysis,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000469804.1\|3616967_3617735_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|3617775_3618123_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_001030985.1\|3618279_3619500_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_001212379.1\|3619492_3620011_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|3620450_3621521_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_000225188.1\|3621530_3622652_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000210984.1\|3622709_3623618_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200077.1\|3623578_3624739_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|3624838_3624886_-	hypothetical protein	NA	NA	NA	NA
WP_000178449.1\|3624989_3625328_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197660.1\|3625599_3626337_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|3626468_3627449_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000992636.1\|3627445_3628177_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235093.1\|3628306_3630880_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.0e-127	35.5
WP_000985655.1\|3636659_3637115_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.9e-34	49.3
WP_000807815.1\|3637218_3638520_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	30.6
WP_001264473.1\|3638516_3638840_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949286.1\|3638884_3640240_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082648.1\|3640354_3643015_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000183642.1\|3643068_3643749_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098733.1\|3643821_3644241_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	5.9e-13	39.0
WP_000997368.1\|3644444_3645482_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_000179978.1\|3645597_3646287_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000627811.1\|3646605_3646989_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000188410.1\|3647050_3647638_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_001675040.1\|3647740_3648640_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219174.1\|3648657_3649992_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_000083345.1\|3650121_3650859_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000989184.1\|3650843_3652466_-	L-aspartate oxidase	NA	NA	NA	NA
WP_122038272.1\|3652730_3652895_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000003307.1\|3652891_3653467_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168374.1\|3653498_3654149_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000812017.1\|3654148_3655105_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_000589049.1\|3655101_3655581_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000929791.1\|3656543_3657146_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_001096550.1\|3657354_3657966_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_099826037.1\|3657962_3658103_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	9.4e-08	78.9
WP_001097241.1\|3658099_3658777_+	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000211410.1\|3659049_3659613_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_000657897.1\|3660119_3660308_+	hypothetical protein	NA	NA	NA	NA
WP_001110783.1\|3660522_3661209_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_001574216.1\|3661484_3661814_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984581.1\|3661797_3662250_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001533543.1\|3662267_3662720_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000669690.1\|3662955_3663357_-	hypothetical protein	NA	NA	NA	NA
WP_000447369.1\|3664240_3664570_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_099826038.1\|3664579_3665305_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	9.4e-91	75.7
WP_080094348.1\|3665295_3665850_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-74	77.2
WP_000593433.1\|3667963_3668788_+\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_000143154.1\|3668777_3669356_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9

DBSCAN-SWA_6

3897491 : 3903544

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_105789229.1\|3897491_3897659_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.3e-11	63.5
WP_105789228.1\|3897674_3897818_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.7e-12	82.9
WP_099826056.1\|3898807_3900730_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	8.1e-299	77.2
WP_000703599.1\|3900747_3901002_-	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_001576268.1\|3900970_3901360_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.1e-50	85.6
WP_000377779.1\|3902602_3903544_-	membrane protein	E7DYY8	Enterobacteria_phage	1.6e-146	87.8

DBSCAN-SWA_7

4139981 : 4149152

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|4139981_4140929_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|4140912_4141644_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|4141624_4141732_-	protein YohO	NA	NA	NA	NA
WP_001240421.1\|4141791_4142523_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.7e-100	87.4
WP_000272845.1\|4142745_4144431_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_000598637.1\|4144427_4145147_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950414.1\|4145193_4145661_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
WP_069057571.1\|4145717_4146248_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703145.1\|4146419_4146878_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
WP_000195340.1\|4147118_4149152_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_8

4216349 : 4226856

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144951.1\|4216349_4217753_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
WP_000981469.1\|4217930_4218824_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|4219200_4220286_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023658.1\|4220285_4221185_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857535.1\|4221232_4222111_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_000973709.1\|4222111_4222663_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_000018223.1\|4222668_4223643_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|4223658_4224432_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565913.1\|4224436_4225516_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000126349.1\|4225542_4226856_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_9

4448606 : 4466193

Salmonella_phage(64.29%)

tRNA,capsid,plate,integrase,tail

attL 4452073:4452086|attR 4460085:4460098

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000004540.1\|4448606_4449713_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476069.1\|4449766_4450228_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000825951.1\|4450239_4450569_-	hypothetical protein	NA	NA	NA	NA
WP_001249412.1\|4450565_4451231_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444507.1\|4451402_4452653_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
4452073:4452086	attL	NA	NA	NA	NA
WP_069057638.1\|4452753_4453896_-\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	4.5e-172	79.7
WP_000089141.1\|4453885_4454122_-	excisionase	NA	NA	NA	NA
WP_069057640.1\|4454376_4455450_+	hypothetical protein	NA	NA	NA	NA
WP_000765639.1\|4455462_4456035_+	hypothetical protein	NA	NA	NA	NA
WP_024134813.1\|4456123_4456513_+	membrane protein	K7PHB9	Enterobacterial_phage	8.1e-41	71.8
WP_074440850.1\|4456620_4458144_+\|capsid	phage major capsid protein	A0A192Y5U9	Salmonella_phage	2.5e-234	97.7
WP_099826090.1\|4458140_4459199_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	7.3e-201	99.1
WP_099826092.1\|4459198_4459732_+\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.6e-95	98.3
WP_071646069.1\|4459736_4460150_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.6e-71	94.2
4460085:4460098	attR	NA	NA	NA	NA
WP_079972649.1\|4460142_4461222_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.2e-200	96.9
WP_079972650.1\|4461224_4461812_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	1.9e-113	99.5
WP_099826094.1\|4461798_4462893_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	1.1e-55	97.3
WP_069057641.1\|4462899_4463301_+\|tail	phage tail protein	A0A1B0V844	Salmonella_phage	3.4e-58	83.3
WP_079840644.1\|4463583_4464591_-	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	1.7e-178	89.6
WP_069057643.1\|4465055_4465727_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.9
WP_001521673.1\|4465980_4466193_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018643

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

67005 : 105699

Salmonella_phage(38.46%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000959884.1\|67005_67968_+	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
WP_001365718.1\|67970_68321_+	protein stbB	NA	NA	NA	NA
WP_001254203.1\|68433_68727_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.7e-43	95.5
WP_001311056.1\|68869_69352_-	hypothetical protein	NA	NA	NA	NA
WP_000113741.1\|69468_70044_-	3'-5' exonuclease	K7RFY5	Vibrio_phage	5.3e-28	39.6
WP_001138082.1\|70087_72973_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-190	39.9
WP_000904897.1\|73098_73722_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
WP_085959879.1\|73752_74881_+\|transposase	IS3-like element IS1133 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-52	41.1
WP_001082319.1\|75013_75817_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1\|75816_76653_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001452736.1\|76778_77090_-	hypothetical protein	NA	NA	NA	NA
WP_000734776.1\|77125_77440_-	IncN plasmid KikA protein	NA	NA	NA	NA
WP_000504251.1\|77402_77780_-	hypothetical protein	NA	NA	NA	NA
WP_024129965.1\|77795_78146_-	H-NS histone family protein	NA	NA	NA	NA
WP_000033783.1\|78209_78944_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000440698.1\|78952_79234_+	hypothetical protein	NA	NA	NA	NA
WP_000209137.1\|79243_79537_+	hypothetical protein	NA	NA	NA	NA
WP_000496058.1\|79586_79904_+	hypothetical protein	NA	NA	NA	NA
WP_001200711.1\|79903_82504_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_000749362.1\|82521_83235_+	hypothetical protein	NA	NA	NA	NA
WP_000734973.1\|83242_83470_+	IncN-type entry exclusion lipoprotein EexN	NA	NA	NA	NA
WP_000886022.1\|83485_84526_+	type IV secretion system protein	NA	NA	NA	NA
WP_000646594.1\|84744_85443_+	type IV secretion system protein	NA	NA	NA	NA
WP_001162874.1\|85516_86338_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_000101711.1\|86337_87498_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_000128596.1\|87539_88535_+	Flp pilus assembly complex ATPase component	NA	NA	NA	NA
WP_000731968.1\|88534_89068_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	2.0e-21	34.5
WP_001351729.1\|91502_91895_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|92032_92917_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|92948_94148_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_099826143.1\|94226_94904_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000844627.1\|94935_95178_-\|transposase	transposase	NA	NA	NA	NA
WP_001138014.1\|95235_98202_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|98205_98766_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001323889.1\|99075_100653_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
WP_000027057.1\|100929_101790_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|101972_102530_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143760.1\|102693_105699_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018642

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018643

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection