CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018633	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 chromosome, complete genome	3 crisprs	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	0	9	5	0
NZ_CP018634	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 plasmid pSE49-2444, complete sequence	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018633_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018633_1

3847408-3847492

Orphan

Consensus_repeat	Method
ACCAGATACCATCAGCTCCTTCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018633_1

>merge|NZ_CP018633|1|3847408-3847492|CRISPRCasFinder
ACCAGATACCATCAGCTCCTTCAGTTCTGACGGCAGCACCGGCAGACTGGTCAGCCGGTGACCAGATACAATCAGCTCCTTCAGT

>NZ_CP018633|1|1|3847408-3847492|CRISPRCasFinder
ACCAGATACCATCAGCTCCTTCAGT	TCTGACGGCAGCACCGGCAGACTGGTCAGCCGGTG
ACCAGATACAATCAGCTCCTTCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018633.1\|WP_000213396.1\|3837305_3838496_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_CP018633.1\|WP_000203612.1\|3834977_3836567_+\|microcin-C-ABC-transporter-ATP-binding-protein-YejF	unknown	unknown	gnl\|CDD\|237917
NZ_CP018633.1\|WP_000256145.1\|3843741_3845502_+\|cardiolipin-transport-protein-PbgA	unknown	unknown	gnl\|CDD\|225625
NZ_CP018633.1\|WP_001576231.1\|3850403_3850607_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP018633.1\|WP_000033431.1\|3841647_3842268_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018633.1\|WP_000050807.1\|3842295_3843303_-\|nucleoid-associated-protein-YejK	unknown	unknown	gnl\|CDD\|178993
NZ_CP018633.1\|WP_049883743.1\|3850798_3851263_-\|acyloxyacyl-hydrolase	unknown	unknown	gnl\|CDD\|378181
NZ_CP018633.1\|WP_001234841.1\|3838523_3839219_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	unknown	unknown	gnl\|CDD\|236774
NZ_CP018633.1\|WP_001115497.1\|3852090_3852738_+\|nitrate/nitrite-response-regulator-protein-NarP	unknown	unknown	gnl\|CDD\|182431
NZ_CP018633.1\|WP_001094639.1\|3836570_3836915_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183333
NZ_CP018633.1\|WP_001238337.1\|3852781_3853825_-\|cytochrome-c-type-biogenesis-protein-CcmH	unknown	unknown	gnl\|CDD\|225630
NZ_CP018633.1\|WP_000828305.1\|3853821_3854379_-\|thiol:disulfide-interchange-protein-DsbE	unknown	unknown	gnl\|CDD\|185310
NZ_CP018633.1\|WP_001113462.1\|3848808_3849012_-\|tail-protein	unknown	unknown	unknown
NZ_CP018633.1\|WP_000578115.1\|3839370_3841131_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP018633.1\|WP_000074113.1\|3856779_3856992_-\|heme-exporter-protein-CcmD	unknown	unknown	gnl\|CDD\|225656
NZ_CP018633.1\|WP_000340080.1\|3850215_3850374_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018633.1\|WP_000982507.1\|3854375_3856307_-\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|129451
NZ_CP018633.1\|WP_001135904.1\|3843482_3843710_+\|YejL-family-protein	unknown	unknown	gnl\|CDD\|237471
NZ_CP018633.1\|WP_000494192.1\|3841255_3841540_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318
NZ_CP018633.1\|WP_001053610.1\|3856303_3856783_-\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|139376

Protein	Function_ID	Function_description	E-value
NZ_CP018633.1\|WP_000213396.1\|3837305_3838496_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP018633.1\|WP_000203612.1\|3834977_3836567_+\|microcin-C-ABC-transporter-ATP-binding-protein-YejF	gnl\|CDD\|237917	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional.	0
NZ_CP018633.1\|WP_000256145.1\|3843741_3845502_+\|cardiolipin-transport-protein-PbgA	gnl\|CDD\|225625	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only].	0
NZ_CP018633.1\|WP_001576231.1\|3850403_3850607_+\|hypothetical-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	0.00269692
NZ_CP018633.1\|WP_000050807.1\|3842295_3843303_-\|nucleoid-associated-protein-YejK	gnl\|CDD\|178993	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated.	0
NZ_CP018633.1\|WP_049883743.1\|3850798_3851263_-\|acyloxyacyl-hydrolase	gnl\|CDD\|378181	pfam09411, PagL, Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.	8.02074e-10
NZ_CP018633.1\|WP_001234841.1\|3838523_3839219_-\|16S-rRNA-pseudouridine(516)-synthase-RsuA	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	0
NZ_CP018633.1\|WP_001115497.1\|3852090_3852738_+\|nitrate/nitrite-response-regulator-protein-NarP	gnl\|CDD\|182431	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP.	5.00871e-143
NZ_CP018633.1\|WP_001094639.1\|3836570_3836915_-\|hypothetical-protein	gnl\|CDD\|183333	PRK11835, PRK11835, hypothetical protein; Provisional.	9.89301e-84
NZ_CP018633.1\|WP_001238337.1\|3852781_3853825_-\|cytochrome-c-type-biogenesis-protein-CcmH	gnl\|CDD\|225630	COG3088, CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones].	3.11605e-74
NZ_CP018633.1\|WP_000828305.1\|3853821_3854379_-\|thiol:disulfide-interchange-protein-DsbE	gnl\|CDD\|185310	PRK15412, PRK15412, thiol:disulfide interchange protein DsbE; Provisional.	1.103e-131
NZ_CP018633.1\|WP_000578115.1\|3839370_3841131_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	4.71915e-100
NZ_CP018633.1\|WP_000074113.1\|3856779_3856992_-\|heme-exporter-protein-CcmD	gnl\|CDD\|225656	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion].	1.50899e-24
NZ_CP018633.1\|WP_000982507.1\|3854375_3856307_-\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|129451	TIGR00353, Cytochrome_c-type_biogenesis_protein_CcmF, c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production. [Energy metabolism, Electron transport].	0
NZ_CP018633.1\|WP_001135904.1\|3843482_3843710_+\|YejL-family-protein	gnl\|CDD\|237471	PRK13689, PRK13689, hypothetical protein; Provisional.	1.09479e-41
NZ_CP018633.1\|WP_000494192.1\|3841255_3841540_+\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	9.92878e-58
NZ_CP018633.1\|WP_001053610.1\|3856303_3856783_-\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|139376	PRK13150, PRK13150, cytochrome c maturation protein CcmE.	2.51018e-109

>NZ_CP018633.1|WP_000256145.1|3843741_3845502_+|cardiolipin-transport-protein-PbgA
MVTHRQRYREKVSQMVSWGHWFALFNILLATLLGSRYLFVADWPTTLAGRIYSYLSIVGHFSFLVFATYLLILFPLTFIVMSQRLMRFISAILATAGMTLLLIDSEVFTRFHLHLNPIVWELVINPDQNEMARDWQLMFISVPVILLIEMLFATWSWQKLRSLTRRRHFARPLAAFFFVSFIASHLIYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLVEQGNPEAVSVQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFEKQMPELATFAEQNIDFTRHMSSGNTTDNGIFGLFYGISPGYMDGVLSTRTPAALITALNQQGYQLGLFSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDWLGRYAQEDNRWFSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFENTVVIITAGRGIPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTDVMTTLMQRLLHVSTPANEYSQGQDIFTVPRRHNWVTAADGSTLAITTPQMTLVLNNNGHYQTYDLHGEKIKDQKPQLSLLLQVLTEEKRFIAN
>NZ_CP018633.1|WP_001135904.1|3843482_3843710_+|YejL-family-protein
MPQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH
>NZ_CP018633.1|WP_000050807.1|3842295_3843303_-|nucleoid-associated-protein-YejK
MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTTTVVEMVAELHRVYSAKNKAYGLFNEESELAQALRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGIVLFCHYRYLAVEYLLVTVLNNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPQSTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEESFPADRSTLRQLTKYAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLREQLQRRTSGEK
>NZ_CP018633.1|WP_000033431.1|3841647_3842268_-|hypothetical-protein
MSKGIRQKPPVNFSLFRQVLYAHIVAFLMMLVLGMVFTVLSLVLFYTYGANWLLSLFICPLFLLSGLFITGFAFKSTWSSIRYYYDKGQLKRYGLNLDATLTHKEKVEIRIDNAKRQVRVDELELHVLFDFQFDSKTWSCGDLLTNEKVFDALNDGQTIPIRILPWKPESASVRQRALFNRLKGMNTAAETTDSRLGEALIECGEV
>NZ_CP018633.1|WP_000494192.1|3841255_3841540_+|50S-ribosomal-protein-L25
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA
>NZ_CP018633.1|WP_000578115.1|3839370_3841131_+|DEAD/DEAH-box-helicase
MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVARNLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAQTRKGVMIFAATVEHAKEIVGLLPADDAALITGDTPGPERDALIDNFKAQRFRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGSPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFDDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDEDGADVSERFRLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>NZ_CP018633.1|WP_001234841.1|3838523_3839219_-|16S-rRNA-pseudouridine(516)-synthase-RsuA
MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKLLPEHAVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTVAQFAKGVQLHNEKDLTKPATLEVITPVQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPGEYRPLTEEEIASVG
>NZ_CP018633.1|WP_000213396.1|3837305_3838496_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGPMADSLGRKPVILGGTLVFAAAAVACALAQTIDQLIVMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILAIAAILASVMIFALIKETLPVERRQPFHIRTTIGNFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYIEINHVPPQDFGYYFALNIVFLFVMTIINSRFVRRVGALNMFRAGLWIQFAMAVWMVFSALMGIGFWALVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGALLSLATFTSAWPMIWSIALCAACSILFYLYASRPKKR
>NZ_CP018633.1|WP_001094639.1|3836570_3836915_-|hypothetical-protein
MNTLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGQSTENSLVALKLLSPAGDSAWSVMHKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGVAIAEPFSNNNPF
>NZ_CP018633.1|WP_000203612.1|3834977_3836567_+|microcin-C-ABC-transporter-ATP-binding-protein-YejF
MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLLEVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLALS
>NZ_CP018633.1|WP_001113462.1|3848808_3849012_-|tail-protein
MPDTDENRRADIHAAGSLKTVKSFKGFIRRKSCAGRQNRKLNARALIPDDLVIVESDPEKIDTLAVK
>NZ_CP018633.1|WP_000340080.1|3850215_3850374_+|hypothetical-protein
MDASDADDEAAAAVLAVSADAALADASPAFVVAVPALLSADAADEAADQNSP
>NZ_CP018633.1|WP_001576231.1|3850403_3850607_+|hypothetical-protein
MPTIKKLADARDVILHELILHELIGHLSCAVVNVKSMQANNVNHVCTKTEKAHLHPMLEEMFVVAGK
>NZ_CP018633.1|WP_049883743.1|3850798_3851263_-|acyloxyacyl-hydrolase
MSFAAGESIRRGGVEHLYTAFLTYSEPSDFFFLQARNNLELGGFKAKGSDDCSKHSGSVPCNKYNQGVLGISKDVALVHFSGIYTGIGLGAYIKSKSRDDMRVNSAFTFGEKAFLGWNFGAFSTEAYIRHFSNGSLTDKNSGHNFVGASISYNF
>NZ_CP018633.1|WP_001115497.1|3852090_3852738_+|nitrate/nitrite-response-regulator-protein-NarP
MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGDGASAIDLANRIEPDLILLDLNMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGIQ
>NZ_CP018633.1|WP_001238337.1|3852781_3853825_-|cytochrome-c-type-biogenesis-protein-CcmH
MRLLPGMVMLMLVLVISGSARATTDVMPFKDEAQEQQFRQLTEQLRCPKCQNNSIADSNAMIATDMRRRVYDLMQEGKSRQEIIDYMVARYGNFVTYDPPLTPLTVLLWVLPLAAIVAGGWIIVARTRRRVRLRREPLPADTPVCGARAGWGVYVPGAVIALAVGAGSYALTGSYQQVRAWQQATAQTPGLLARALDPAAQPLNEEEMARLALGLRTRLQNDAGNVEGWLMLGRTGMVLGNAGTATGAYANAYRLAPKNSDAALGYAEALTRSSDPEDNRRGGELLRQLVRSDHTDIRVLSLYAFSAFEQRRFGEAVAAWEMMLKLLPADDTRRAVIERSIRLAQEK
>NZ_CP018633.1|WP_000828305.1|3853821_3854379_-|thiol:disulfide-interchange-protein-DsbE
MKRNVLLLPLLIFLLIAAALLWQLTRNAQGDDPTNLESALTGKPVPAFRLESLETPGQYYEAEVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGLNYKDDRAKAVAWLKELGNPYALSLSDSDGMLGLDLGVYGAPETFLIDGRGIIRYRHAGDLNARVWESELKPLWDRYSREAAQ
>NZ_CP018633.1|WP_000982507.1|3854375_3856307_-|heme-lyase-CcmF/NrfE-family-subunit
MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAWLLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTLAVAVFSRPVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRGHRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFNTMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLWAAVVTTLVLSVLLPWLLEDKIIAMTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYSVERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRLYNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGGLLCLVDPRYRRRKPLPEAG
>NZ_CP018633.1|WP_001053610.1|3856303_3856783_-|cytochrome-c-maturation-protein-CcmE
MNLRRKNRLWVVCAVLAGLALTTALVLYALRANIDLFYTPGEILYGKRETQQLPAVGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLEKGSHVLAQEVLAKHDENYTPPEVEKAMQENHRRPQRADKDTSS
>NZ_CP018633.1|WP_000074113.1|3856779_3856992_-|heme-exporter-protein-CcmD
MSPAFSSWSDFFAMGGYAFFVWLAVAMTVAPLVLLALHTVLQRRAILRGVAQQRAREARMRAAQAQQEAA

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Crispr_ID: NZ_CP018633_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018633_2

4507044-4507560

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP018633_2

>merge|NZ_CP018633|2|4507044-4507560|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTATTTATAAGCGTGTCATCTATGCAACCCAACCGGTTTATCCCCGCTGGCGCGGGGAACACACCTGCCCGACCCAATAAGGGGGCCCTCGTGACGGTTTATCCCCGCTGGCGCGGGGAACACGGCCGCTGGTCAAATTCCCAATCTGAGCAATCCGGTTTATCCCCGCTGGCGCGGGGAACACGCCTCAAAATCTCTCGGTGAGATGTAAGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACACACCAGTGGTCAGCGGCGGATGAATTTGCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGAATGCTCATGCGCGTGAGCGCCATATATTCGGTTTATCCCCGCTGGCGCGGGGAACACCATGGCAATTTTACGGCGGACGTGCTCGCTCTCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGGACCGAAAAACCGTTTTCAGCCAACGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018633|2|2|4507044-4507560|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGGCAATTTTACGGCGGACGTGCTCGCTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018633|2|1|4507044-4507560|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGGCAATTTTACGGCGGACGTGCTCGCTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018633|2|1|4507046-4507560|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACTA	TTTATAAGCGTGTCATCTATGCAACCCAACCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CTGCCCGACCCAATAAGGGGGCCCTCGTGACG
GTTTATCCCCGCTGGCGCGGGGAACACGG	CCGCTGGTCAAATTCCCAATCTGAGCAATCCG
GTTTATCCCCGCTGGCGCGGGGAACACGC	CTCAAAATCTCTCGGTGAGATGTAAGCGTCCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CAGTGGTCAGCGGCGGATGAATTTGCCCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GAATGCTCATGCGCGTGAGCGCCATATATTCG
GTTTATCCCCGCTGGCGCGGGGAACACCA	TGGCAATTTTACGGCGGACGTGCTCGCTCTCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	GCGGACCGAAAAACCGTTTTCAGCCAACGTCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018633.1\|WP_000039870.1\|4517594_4518329_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP018633.1\|WP_001173663.1\|4502782_4503388_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP018633.1\|WP_001118109.1\|4502408_4502765_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP018633.1\|WP_000117945.1\|4511327_4511882_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018633.1\|WP_000741653.1\|4501177_4501888_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP018633.1\|WP_001219253.1\|4500698_4501178_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP018633.1\|WP_000281483.1\|4508866_4509517_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP018633.1\|WP_001221540.1\|4498910_4499672_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP018633.1\|WP_000368579.1\|4511878_4513435_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP018633.1\|WP_000372384.1\|4504823_4505732_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP018633.1\|WP_001518648.1\|4507656_4507950_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP018633.1\|WP_001145541.1\|4516553_4517507_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP018633.1\|WP_001092251.1\|4503374_4504814_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP018633.1\|WP_000085115.1\|4509498_4510245_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP018633.1\|WP_000490481.1\|4505982_4507029_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP018633.1\|WP_000134246.1\|4499652_4500702_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP018633.1\|WP_001290672.1\|4518430_4520143_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP018633.1\|WP_000517480.1\|4501906_4502218_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP018633.1\|WP_000144830.1\|4507949_4508870_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP018633.1\|WP_000206417.1\|4510255_4511314_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP018633.1\|WP_000039870.1\|4517594_4518329_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP018633.1\|WP_001173663.1\|4502782_4503388_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP018633.1\|WP_001118109.1\|4502408_4502765_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP018633.1\|WP_000117945.1\|4511327_4511882_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP018633.1\|WP_000741653.1\|4501177_4501888_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP018633.1\|WP_001219253.1\|4500698_4501178_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NZ_CP018633.1\|WP_000281483.1\|4508866_4509517_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP018633.1\|WP_001221540.1\|4498910_4499672_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.22913e-144
NZ_CP018633.1\|WP_000368579.1\|4511878_4513435_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP018633.1\|WP_000372384.1\|4504823_4505732_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP018633.1\|WP_001518648.1\|4507656_4507950_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP018633.1\|WP_001145541.1\|4516553_4517507_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP018633.1\|WP_001092251.1\|4503374_4504814_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP018633.1\|WP_000085115.1\|4509498_4510245_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP018633.1\|WP_000490481.1\|4505982_4507029_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP018633.1\|WP_000134246.1\|4499652_4500702_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP018633.1\|WP_001290672.1\|4518430_4520143_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP018633.1\|WP_000517480.1\|4501906_4502218_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP018633.1\|WP_000144830.1\|4507949_4508870_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
NZ_CP018633.1\|WP_000206417.1\|4510255_4511314_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133

>NZ_CP018633.1|WP_000490481.1|4505982_4507029_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP018633.1|WP_000372384.1|4504823_4505732_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP018633.1|WP_001092251.1|4503374_4504814_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP018633.1|WP_001173663.1|4502782_4503388_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP018633.1|WP_001118109.1|4502408_4502765_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP018633.1|WP_000517480.1|4501906_4502218_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP018633.1|WP_000741653.1|4501177_4501888_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP018633.1|WP_001219253.1|4500698_4501178_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP018633.1|WP_000134246.1|4499652_4500702_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP018633.1|WP_001221540.1|4498910_4499672_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVSDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP018633.1|WP_001518648.1|4507656_4507950_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP018633.1|WP_000144830.1|4507949_4508870_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP018633.1|WP_000281483.1|4508866_4509517_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP018633.1|WP_000085115.1|4509498_4510245_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP018633.1|WP_000206417.1|4510255_4511314_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP018633.1|WP_000117945.1|4511327_4511882_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP018633.1|WP_000368579.1|4511878_4513435_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP018633.1|WP_001145541.1|4516553_4517507_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP018633.1|WP_000039870.1|4517594_4518329_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP018633.1|WP_001290672.1|4518430_4520143_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NZ_CP018633_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018633_3

4523712-4523985

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACACA	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

4 spacers

cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP018633_3

>merge|NZ_CP018633|3|4523712-4523985|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGATTAAGATCCGCAGTCTGCATCAGTAACTCGGTTTATCCCCGCTGGCGAGGGGAACACCGATTCTACGGCAACAGGCCAGGCTGCGACCGCGGTTTATCCCCGCTGGCGCGGGGAACACATGACATGACCGTGACTAGCGAGAATGTCCCACGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP018633|3|3|4523712-4523985|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACACG	GCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACACC	CGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACACC	GATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACACA	TGACATGACCGTGACTAGCGAGAATGTCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP018633|3|2|4523712-4523984|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018633|3|2|4523773-4523984|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018633.1\|WP_000108313.1\|4522365_4522728_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP018633.1\|WP_000210863.1\|4526468_4528106_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP018633.1\|WP_000210932.1\|4520142_4521942_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP018633.1\|WP_000117945.1\|4511327_4511882_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018633.1\|WP_000206417.1\|4510255_4511314_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP018633.1\|WP_000178270.1\|4533912_4534419_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP018633.1\|WP_000368579.1\|4511878_4513435_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP018633.1\|WP_000036734.1\|4525087_4526386_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP018633.1\|WP_000085115.1\|4509498_4510245_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP018633.1\|WP_000842512.1\|4529741_4530329_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP018633.1\|WP_001290672.1\|4518430_4520143_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP018633.1\|WP_001207998.1\|4522815_4523613_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP018633.1\|WP_001145541.1\|4516553_4517507_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP018633.1\|WP_001072353.1\|4535491_4536523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018633.1\|WP_001044459.1\|4533119_4533893_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP018633.1\|WP_001079646.1\|4534900_4535437_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP018633.1\|WP_000039870.1\|4517594_4518329_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP018633.1\|WP_000210451.1\|4528333_4529134_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP018633.1\|WP_000832393.1\|4534433_4534904_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP018633.1\|WP_001199961.1\|4524280_4524952_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126

Protein	Function_ID	Function_description	E-value
NZ_CP018633.1\|WP_000108313.1\|4522365_4522728_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP018633.1\|WP_000210863.1\|4526468_4528106_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP018633.1\|WP_000210932.1\|4520142_4521942_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP018633.1\|WP_000117945.1\|4511327_4511882_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP018633.1\|WP_000206417.1\|4510255_4511314_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP018633.1\|WP_000178270.1\|4533912_4534419_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP018633.1\|WP_000368579.1\|4511878_4513435_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP018633.1\|WP_000036734.1\|4525087_4526386_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP018633.1\|WP_000085115.1\|4509498_4510245_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP018633.1\|WP_000842512.1\|4529741_4530329_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP018633.1\|WP_001290672.1\|4518430_4520143_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP018633.1\|WP_001207998.1\|4522815_4523613_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
NZ_CP018633.1\|WP_001145541.1\|4516553_4517507_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP018633.1\|WP_001044459.1\|4533119_4533893_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP018633.1\|WP_001079646.1\|4534900_4535437_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
NZ_CP018633.1\|WP_000039870.1\|4517594_4518329_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP018633.1\|WP_000210451.1\|4528333_4529134_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP018633.1\|WP_000832393.1\|4534433_4534904_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
NZ_CP018633.1\|WP_001199961.1\|4524280_4524952_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155

>NZ_CP018633.1|WP_001207998.1|4522815_4523613_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP018633.1|WP_000108313.1|4522365_4522728_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP018633.1|WP_000210932.1|4520142_4521942_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP018633.1|WP_001290672.1|4518430_4520143_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP018633.1|WP_000039870.1|4517594_4518329_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP018633.1|WP_001145541.1|4516553_4517507_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP018633.1|WP_000368579.1|4511878_4513435_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP018633.1|WP_000117945.1|4511327_4511882_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP018633.1|WP_000206417.1|4510255_4511314_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP018633.1|WP_000085115.1|4509498_4510245_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP018633.1|WP_001199961.1|4524280_4524952_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP018633.1|WP_000036734.1|4525087_4526386_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP018633.1|WP_000210863.1|4526468_4528106_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP018633.1|WP_000210451.1|4528333_4529134_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP018633.1|WP_000842512.1|4529741_4530329_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP018633.1|WP_001044459.1|4533119_4533893_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP018633.1|WP_000178270.1|4533912_4534419_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP018633.1|WP_000832393.1|4534433_4534904_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP018633.1|WP_001079646.1|4534900_4535437_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP018633.1|WP_001072353.1|4535491_4536523_+|hypothetical-protein
MNQKVLFFLSIIAYPGITQAINQNVMIEPLVIRDSTNYLVLPQAQQAEFSQCKSWPHDSTVIPAKYEATLLNGSLISMFIGGITVNLYTTADVKVNTDAQCTLLNGNFPGYYGITCFVTGYDTDKAVPVRTDNGMSIIESKLYATGTMRYITEIPMDGSGFQGMAIGGAVVINTGAITPTPNTGVISNITMPPLYDPGFIFTVPGCGQYKYHSGTGSVFTNNNSTYTVASPIGFITASLDKNSVLNYNELHYNDKAENIELGKIYLMYKEKNVTWGEGFDYTLENSTINVVCADSRIKTNVDYQCRNGDMGACNNGELGRIIGNWERINVDTNCSVTVILPWQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018633_3	3.3\|4523864\|31\|NZ_CP018633\|CRISPRCasFinder	4523864-4523894	31	MN694003	Marine virus AFVG_250M677, complete genome	17629-17659	7	0.774
NZ_CP018633_3	3.7\|4523863\|32\|NZ_CP018633\|CRT,PILER-CR	4523863-4523894	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
NZ_CP018633_1	1.1\|3847433\|35\|NZ_CP018633\|CRISPRCasFinder	3847433-3847467	35	NZ_CP033223	Parasedimentitalea marina strain W43 plasmid pW43D, complete sequence	78506-78540	9	0.743
NZ_CP018633_2	2.1\|4507073\|32\|NZ_CP018633\|CRISPRCasFinder,CRT	4507073-4507104	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP018633_2	2.3\|4507195\|32\|NZ_CP018633\|CRISPRCasFinder,CRT	4507195-4507226	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
NZ_CP018633_2	2.3\|4507195\|32\|NZ_CP018633\|CRISPRCasFinder,CRT	4507195-4507226	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
NZ_CP018633_2	2.3\|4507195\|32\|NZ_CP018633\|CRISPRCasFinder,CRT	4507195-4507226	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
NZ_CP018633_2	2.3\|4507195\|32\|NZ_CP018633\|CRISPRCasFinder,CRT	4507195-4507226	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
NZ_CP018633_2	2.6\|4507378\|32\|NZ_CP018633\|CRISPRCasFinder,CRT	4507378-4507409	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
NZ_CP018633_2	2.9\|4507075\|32\|NZ_CP018633\|PILER-CR	4507075-4507106	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP018633_2	2.11\|4507197\|32\|NZ_CP018633\|PILER-CR	4507197-4507228	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
NZ_CP018633_2	2.11\|4507197\|32\|NZ_CP018633\|PILER-CR	4507197-4507228	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
NZ_CP018633_2	2.11\|4507197\|32\|NZ_CP018633\|PILER-CR	4507197-4507228	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
NZ_CP018633_2	2.11\|4507197\|32\|NZ_CP018633\|PILER-CR	4507197-4507228	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
NZ_CP018633_2	2.14\|4507380\|32\|NZ_CP018633\|PILER-CR	4507380-4507411	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719

1. spacer 3.3|4523864|31|NZ_CP018633|CRISPRCasFinder matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 7, identity: 0.774

gattctacggcaacaggccaggctgcgaccg	CRISPR spacer
gcgagcacggcaacagcccaggctgcgatcg	Protospacer
*    .********** ***********.**

2. spacer 3.7|4523863|32|NZ_CP018633|CRT,PILER-CR matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cgattctacggcaacaggccaggctgcgaccg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcg	Protospacer
 *    .********** ***********.**

3. spacer 1.1|3847433|35|NZ_CP018633|CRISPRCasFinder matches to NZ_CP033223 (Parasedimentitalea marina strain W43 plasmid pW43D, complete sequence) position: , mismatch: 9, identity: 0.743

tctgacggcagcaccggcagactggtcagccggtg	CRISPR spacer
gctaccggcagcaccagcagacgggtcagcagtga	Protospacer
 **. **********.****** ******* *  .

4. spacer 2.1|4507073|32|NZ_CP018633|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

5. spacer 2.3|4507195|32|NZ_CP018633|CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

6. spacer 2.3|4507195|32|NZ_CP018633|CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

7. spacer 2.3|4507195|32|NZ_CP018633|CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

8. spacer 2.3|4507195|32|NZ_CP018633|CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

9. spacer 2.6|4507378|32|NZ_CP018633|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

10. spacer 2.9|4507075|32|NZ_CP018633|PILER-CR matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

11. spacer 2.11|4507197|32|NZ_CP018633|PILER-CR matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

12. spacer 2.11|4507197|32|NZ_CP018633|PILER-CR matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

13. spacer 2.11|4507197|32|NZ_CP018633|PILER-CR matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

14. spacer 2.11|4507197|32|NZ_CP018633|PILER-CR matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

15. spacer 2.14|4507380|32|NZ_CP018633|PILER-CR matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2503295 : 2510608

Dickeya_phage(16.67%)

integrase,protease

attL 2492032:2492047|attR 2510826:2510841

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2492032:2492047	attL	NA	NA	NA	NA
WP_001201751.1\|2503295_2504414_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125875.1\|2504410_2506357_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|2506486_2506708_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|2507031_2507352_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|2507382_2509659_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|2509871_2510069_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|2510230_2510608_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
2510826:2510841	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2561019 : 2622536

Salmonella_phage(23.53%)

tRNA,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|2561019_2561823_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288833.1\|2561815_2563138_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|2563118_2563823_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572746.1\|2563822_2568289_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925870.1\|2568633_2570484_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|2570743_2571292_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|2571319_2571967_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|2572028_2573219_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_000977709.1\|2573403_2574495_-	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000117867.1\|2575088_2576489_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
WP_000762342.1\|2576689_2577151_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544855.1\|2577468_2578683_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893200.1\|2578928_2580365_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191404.1\|2580442_2581645_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001676370.1\|2581839_2582250_-	enterohemolysin	H6WRX0	Salmonella_phage	5.0e-33	100.0
WP_000274547.1\|2582270_2582900_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.6e-75	65.9
WP_000729406.1\|2582883_2583510_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_000583383.1\|2583506_2585216_+\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
WP_000143166.1\|2585215_2585797_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.2e-93	89.0
WP_072100753.1\|2585800_2586049_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.1e-18	66.2
WP_001674638.1\|2586274_2587243_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
WP_000334547.1\|2587890_2588517_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001525490.1\|2588876_2589563_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|2589833_2590025_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193790.1\|2590451_2593064_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
WP_000291718.1\|2593271_2594282_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001574119.1\|2594447_2594990_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224079.1\|2594986_2596096_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|2596194_2598303_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|2598315_2600223_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333138.1\|2600237_2601491_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|2601495_2603136_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|2603132_2603696_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|2603950_2604118_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|2604217_2604736_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_080177874.1\|2604804_2606565_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|2606750_2607203_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|2607274_2608327_-	porin OmpA	NA	NA	NA	NA
WP_000288733.1\|2608683_2609193_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202372.1\|2609409_2610015_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950873.1\|2610001_2612155_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|2612173_2612620_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|2612743_2614798_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|2614833_2615292_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|2615386_2616049_-	DUF2057 family protein	NA	NA	NA	NA
WP_000975204.1\|2616219_2616636_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|2616680_2616998_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140478.1\|2617055_2618267_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859416.1\|2618481_2619030_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548080.1\|2619055_2619835_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000072880.1\|2619883_2620165_+	acylphosphatase	NA	NA	NA	NA
WP_000904449.1\|2620161_2620491_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374046.1\|2620577_2621237_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000938185.1\|2621855_2622536_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.1e-80	70.6

DBSCAN-SWA_3

2794928 : 2807539

Salmonella_phage(27.27%)

holin,integrase,tail,lysis

attL 2794764:2794793|attR 2814378:2814407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2794764:2794793	attL	NA	NA	NA	NA
WP_000087636.1\|2794928_2796008_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
WP_001696937.1\|2795982_2796261_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.6e-11	38.6
WP_001237394.1\|2796674_2798654_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_000972676.1\|2799285_2799591_+	hypothetical protein	NA	NA	NA	NA
WP_000940753.1\|2799654_2800254_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
WP_000784710.1\|2800250_2800478_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
WP_001097218.1\|2800607_2801297_+	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-60	54.9
WP_001574213.1\|2801393_2801918_+	hypothetical protein	NA	NA	NA	NA
WP_000798708.1\|2802291_2802741_-	hypothetical protein	NA	NA	NA	NA
WP_001574215.1\|2803101_2803788_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_001574216.1\|2804063_2804393_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001541990.1\|2804846_2805326_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000877926.1\|2806220_2806754_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152416.1\|2806843_2807539_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
2814378:2814407	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3764544 : 3773715

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195340.1\|3764544_3766578_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_000703145.1\|3766818_3767277_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
WP_001197951.1\|3767448_3767979_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950417.1\|3768035_3768503_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.3e-72	89.0
WP_000598637.1\|3768549_3769269_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|3769265_3770951_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240421.1\|3771173_3771905_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.7e-100	87.4
WP_001261696.1\|3771964_3772072_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|3772052_3772784_-	ABC transporter permease	NA	NA	NA	NA
WP_000569168.1\|3772767_3773715_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

DBSCAN-SWA_5

4245603 : 4346208

Salmonella_phage(68.97%)

portal,head,integrase,terminase,lysis,plate,transposase,tRNA,tail,capsid

attL 4330527:4330543|attR 4354921:4354937

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000083345.1\|4245603_4246341_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219180.1\|4246470_4247805_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_001675040.1\|4247822_4248722_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188410.1\|4248824_4249412_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|4249473_4249857_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|4250175_4250865_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997368.1\|4250980_4252018_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098733.1\|4252221_4252641_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	5.9e-13	39.0
WP_000183642.1\|4252713_4253394_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082648.1\|4253447_4256108_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|4256222_4257578_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264471.1\|4257622_4257946_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807806.1\|4257942_4259244_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.3e-44	30.4
WP_000985655.1\|4259347_4259803_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.9e-34	49.3
WP_001235088.1\|4265580_4268154_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.7e-126	35.6
WP_000992636.1\|4268283_4269015_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|4269011_4269992_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|4270123_4270861_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_099800795.1\|4271132_4271471_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|4271574_4271622_+	hypothetical protein	NA	NA	NA	NA
WP_000200084.1\|4271721_4272882_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210984.1\|4272842_4273751_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225188.1\|4273808_4274930_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|4274939_4276010_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212379.1\|4276449_4276968_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|4276960_4278181_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|4278337_4278685_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469804.1\|4278725_4279493_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|4279537_4280086_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|4280104_4280353_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|4280605_4281967_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|4282132_4282924_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|4282943_4284230_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001287925.1\|4284350_4284956_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|4284990_4285581_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059151.1\|4285704_4286583_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880965.1\|4286668_4288330_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|4288478_4288817_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|4288982_4289273_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|4289262_4289739_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|4289888_4290371_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237695.1\|4290985_4302451_+	biofilm-associated protein BapA	NA	NA	NA	NA
WP_000533863.1\|4302515_4303925_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196154.1\|4303921_4306102_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_012543392.1\|4306109_4307273_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000980498.1\|4307824_4308043_-	hypothetical protein	Q53ZE7	Salmonella_virus	2.1e-38	100.0
WP_001010545.1\|4308111_4309212_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.8e-192	97.5
WP_000980418.1\|4309208_4309694_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	98.5
WP_099800796.1\|4309690_4312498_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	99.5
WP_000763317.1\|4312490_4312610_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
WP_001280962.1\|4312624_4312927_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
WP_001207653.1\|4312981_4313497_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_000046104.1\|4313506_4314679_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-222	99.5
WP_023972199.1\|4314781_4315339_-	serine-type DNA invertase Fin	A0A1S6L009	Salmonella_phage	3.6e-98	98.4
WP_001117078.1\|4315367_4316387_+	hypothetical protein	A0A1B0V7G4	Salmonella_phage	1.1e-182	92.9
WP_001287104.1\|4316393_4316801_+\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	6.7e-62	85.2
WP_077906433.1\|4316804_4317422_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	3.1e-95	84.6
WP_080177824.1\|4317391_4318966_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	4.8e-156	60.7
WP_001086803.1\|4318962_4319568_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.2e-117	99.0
WP_000268329.1\|4319560_4320469_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.0e-158	98.7
WP_000177404.1\|4320455_4320815_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	9.8e-57	95.8
WP_000993749.1\|4320811_4321390_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000343950.1\|4321458_4321905_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.9e-65	89.0
WP_001039964.1\|4321897_4322329_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	4.0e-73	95.1
WP_001648763.1\|4322424_4322853_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
WP_000871620.1\|4322849_4323224_-	hypothetical protein	NA	NA	NA	NA
WP_001069920.1\|4323228_4323738_-	lysozyme	A0A1S6KZY9	Salmonella_phage	6.4e-94	98.8
WP_000171565.1\|4323718_4323934_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868184.1\|4323937_4324141_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000673535.1\|4324140_4324605_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.2e-84	98.1
WP_000059170.1\|4324698_4325349_-\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	4.9e-115	99.1
WP_000742418.1\|4325352_4326432_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.2e-181	90.8
WP_000216230.1\|4326448_4327282_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.2e-126	94.2
WP_001697092.1\|4327424_4329191_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.6
WP_001697093.1\|4329190_4329916_+	hypothetical protein	E5FFI8	Burkholderia_phage	4.2e-22	32.6
WP_000044286.1\|4329912_4330950_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.2e-175	88.8
4330527:4330543	attL	NA	NA	NA	NA
WP_000109088.1\|4331000_4332743_-	AIPR family protein	NA	NA	NA	NA
WP_023134870.1\|4333018_4333696_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|4333809_4334043_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154433.1\|4334053_4334242_-	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
WP_001697094.1\|4334394_4336824_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	91.8
WP_000207698.1\|4336814_4337672_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.2e-129	80.7
WP_000178747.1\|4337668_4337965_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	1.5e-10	45.5
WP_000785511.1\|4337961_4338189_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	7.3e-34	89.3
WP_001244235.1\|4338188_4338422_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	1.4e-32	97.4
WP_000359661.1\|4338524_4338674_-	DUF3927 domain-containing protein	A0A0A0YRI9	Escherichia_phage	2.2e-07	61.7
WP_000863719.1\|4338673_4339102_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	3.6e-58	87.4
WP_000963467.1\|4339156_4339507_-	hypothetical protein	E5G6L5	Salmonella_phage	8.7e-34	65.2
WP_000956169.1\|4339470_4339671_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.8e-28	90.8
WP_000460953.1\|4339678_4340188_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.7e-83	92.9
WP_023222899.1\|4340223_4340469_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	8.2e-23	67.9
WP_001256628.1\|4340585_4341218_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.6e-81	69.0
WP_001697097.1\|4341220_4342246_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	6.2e-197	97.1
WP_001142974.1\|4342505_4343099_+	hypothetical protein	NA	NA	NA	NA
WP_000445378.1\|4343497_4344301_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	1.2e-62	44.7
WP_089113803.1\|4345096_4346208_-\|transposase	IS3-like element IS1351 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-07	25.6
4354921:4354937	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018634

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9455 : 16363

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000925628.1\|9455_9878_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.0e-29	52.4
WP_000457542.1\|9877_11152_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.9e-156	64.5
WP_077681951.1\|11233_12211_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	6.7e-84	53.5
WP_000427676.1\|12207_13413_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728919.1\|13827_14769_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	4.7e-74	54.7
WP_000176303.1\|14765_15371_-	DUF2913 family protein	NA	NA	NA	NA
WP_099800803.1\|15427_15763_-	hypothetical protein	NA	NA	NA	NA
WP_001541564.1\|15946_16363_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018633

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018634

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection