CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018056	Klebsiella pneumoniae subsp. pneumoniae strain H11 chromosome, complete genome	2 crisprs	csa3,DEDDh,DinG,RT,cas3,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018056_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018056_1

2766238-2766357

Orphan

Consensus_repeat	Method
CTTACCCGGCCTACAAAACTGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018056_1

>merge|NZ_CP018056|1|2766238-2766357|CRISPRCasFinder
CTTACCCGGCCTACAAAACTGAAGCAGCAGCCCCGGCATGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGACGTCTTACCCGGCCTACAAAACTGAAGCAGCAG

>NZ_CP018056|1|1|2766238-2766357|CRISPRCasFinder
CTTACCCGGCCTACAAAACTGAAGCAGCAG	CCCCGGCATGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGACGT
CTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018056.1\|WP_004145825.1\|2774409_2774991_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP018056.1\|WP_004177336.1\|2769072_2769867_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP018056.1\|WP_002889733.1\|2761415_2761874_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP018056.1\|WP_004178681.1\|2759609_2760008_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP018056.1\|WP_002889720.1\|2766602_2767826_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP018056.1\|WP_048336891.1\|2763631_2764084_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP018056.1\|WP_002889702.1\|2771101_2772445_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP018056.1\|WP_050885252.1\|2757578_2758994_+\|DUF4832-domain-containing-protein	unknown	unknown	gnl\|CDD\|374373
NZ_CP018056.1\|WP_002889726.1\|2764086_2765142_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP018056.1\|WP_004177335.1\|2767838_2768435_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP018056.1\|WP_002889716.1\|2768441_2769080_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP018056.1\|WP_002889742.1\|2760065_2761310_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP018056.1\|WP_032435628.1\|2757157_2757571_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018056.1\|WP_002889696.1\|2773567_2774335_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP018056.1\|WP_002889722.1\|2766384_2766600_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP018056.1\|WP_004152033.1\|2762131_2763589_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP018056.1\|WP_002889703.1\|2769859_2771098_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP018056.1\|WP_032419619.1\|2765301_2766162_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176522
NZ_CP018056.1\|WP_002889699.1\|2772856_2773597_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP018056.1\|WP_023316475.1\|2759005_2759527_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|100045

Protein	Function_ID	Function_description	E-value
NZ_CP018056.1\|WP_004145825.1\|2774409_2774991_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP018056.1\|WP_004177336.1\|2769072_2769867_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP018056.1\|WP_002889733.1\|2761415_2761874_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP018056.1\|WP_004178681.1\|2759609_2760008_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.06899e-83
NZ_CP018056.1\|WP_002889720.1\|2766602_2767826_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP018056.1\|WP_048336891.1\|2763631_2764084_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	2.0776e-84
NZ_CP018056.1\|WP_002889702.1\|2771101_2772445_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP018056.1\|WP_050885252.1\|2757578_2758994_+\|DUF4832-domain-containing-protein	gnl\|CDD\|374373	pfam16116, DUF4832, Domain of unknown function (DUF4832). This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Bacteroides and Capnocytophaga species. The function of this family is unknown. Distant homology analysis suggests a possible similarity of proteins from this family to TIM barrel glycoside hydrolases and, subsequently its involvement in carbohydrate metabolism.The domain lies downstream of glycosyl hydrolases 42 suggesting that as a domain it might represent the carbohydrate-binding region of the enzyme.	2.47375e-17
NZ_CP018056.1\|WP_002889726.1\|2764086_2765142_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP018056.1\|WP_004177335.1\|2767838_2768435_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP018056.1\|WP_002889716.1\|2768441_2769080_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP018056.1\|WP_002889742.1\|2760065_2761310_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP018056.1\|WP_002889696.1\|2773567_2774335_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP018056.1\|WP_002889722.1\|2766384_2766600_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_CP018056.1\|WP_004152033.1\|2762131_2763589_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP018056.1\|WP_002889703.1\|2769859_2771098_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP018056.1\|WP_032419619.1\|2765301_2766162_+\|hypothetical-protein	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	6.14578e-130
NZ_CP018056.1\|WP_002889699.1\|2772856_2773597_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP018056.1\|WP_023316475.1\|2759005_2759527_+\|serine-acetyltransferase	gnl\|CDD\|100045	cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.	6.34051e-38

>NZ_CP018056.1|WP_032419619.1|2765301_2766162_+|hypothetical-protein
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAKELGADGVMVDSPAQAKSWQ
>NZ_CP018056.1|WP_002889726.1|2764086_2765142_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP018056.1|WP_048336891.1|2763631_2764084_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAAHGEWFINYRMEKRVALR
>NZ_CP018056.1|WP_004152033.1|2762131_2763589_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP018056.1|WP_002889733.1|2761415_2761874_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP018056.1|WP_002889742.1|2760065_2761310_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP018056.1|WP_004178681.1|2759609_2760008_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSERLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP018056.1|WP_023316475.1|2759005_2759527_+|serine-acetyltransferase
MPNAISQVRREIKHTGSMKAKIAILLYRLATLYRSRNPFYKLLGIPFVILNKLINECLFCVELPWQTRIGYGLKLYHPHCIVLNRGTVIGENCILRQGATIGSLTDSEGREGASPVIGNNVEFGAHVVVIGPVTLGDNVKIGAGTVVTKDLAAGQVVVGQPFRVLHTHREMQE
>NZ_CP018056.1|WP_050885252.1|2757578_2758994_+|DUF4832-domain-containing-protein
MAILSLPRASLFRSLLLASTLASASVGAQTTVITPPPFDGLLTNPGIGVASFHDGYGEKPTRAEYPDTGFEYDRFYWSELEPQEGVYNFAPIDNAFSIAASHQPAMNVGLRVMALDEPQTGSKIPDWLIAKGIKGQWVADGKTFVPDLSDATFIAYAQKLLTALGQRYDGNPELAFIDIGMVGSWGEWHNSNFSDIPPLMEKYTPEQLNRYVDMHFDSFPKTPKVMLISGGDSLAWASRRGAGWRADCWGDWHNFSSEWSHMRDDYPQRLAAAQAAAPGFVDSWKRAPVSLEICGYMSEWQSVQHYTREEVQATFDWALQQHASSLNLKSRPIPAEYRDIVDKALLQIGYRFRVNKLAFETPVKAGKPLAVSVTWRNDGVAPAYLFYPVQWRVVNAAGATVTQLKTQDDVRRWLPGDMQSTVTLALPASLPAGDYALQTAITDAHGKPRLLLANQGKTADGWYQLTTFSLK
>NZ_CP018056.1|WP_032435628.1|2757157_2757571_+|hypothetical-protein
MPKSTAELVVERFYAALDQEVETSLTAEQKRGIEQALVRANLASRHRIDFRHSFPFLHRRYFVVFLFGRDLRNVSRESTLFGRIFTTLLITLGVVFALLSILLALYMLKSALGIDVFKNFHVGIWTWFVNLHDHMTK
>NZ_CP018056.1|WP_002889722.1|2766384_2766600_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP018056.1|WP_002889720.1|2766602_2767826_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP018056.1|WP_004177335.1|2767838_2768435_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP018056.1|WP_002889716.1|2768441_2769080_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP018056.1|WP_004177336.1|2769072_2769867_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP018056.1|WP_002889703.1|2769859_2771098_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP018056.1|WP_002889702.1|2771101_2772445_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP018056.1|WP_002889699.1|2772856_2773597_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP018056.1|WP_002889696.1|2773567_2774335_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP018056.1|WP_004145825.1|2774409_2774991_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Crispr_ID: NZ_CP018056_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018056_2

2983276-2983370

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018056_2

>merge|NZ_CP018056|2|2983276-2983370|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP018056|2|2|2983276-2983370|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018056.1\|WP_002888329.1\|2989332_2990619_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP018056.1\|WP_016531719.1\|2974034_2974730_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP018056.1\|WP_011977646.1\|2970674_2972384_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP018056.1\|WP_002888348.1\|2980369_2981029_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP018056.1\|WP_004177428.1\|2981103_2981643_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP018056.1\|WP_004178576.1\|2974905_2977263_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP018056.1\|WP_002888373.1\|2968595_2969363_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP018056.1\|WP_004177424.1\|2972394_2973897_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP018056.1\|WP_002888345.1\|2981822_2983187_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP018056.1\|WP_002888332.1\|2985858_2986686_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP018056.1\|WP_002888320.1\|2994083_2994563_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP018056.1\|WP_004182906.1\|2985127_2985826_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP018056.1\|WP_004145972.1\|2969491_2970337_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP018056.1\|WP_002888324.1\|2991610_2992432_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP018056.1\|WP_004147026.1\|2986929_2989278_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP018056.1\|WP_004177426.1\|2977450_2980357_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP018056.1\|WP_032433044.1\|2983511_2985128_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP018056.1\|WP_002888321.1\|2992816_2993665_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP018056.1\|WP_002888327.1\|2990624_2991614_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP018056.1\|WP_002888323.1\|2992434_2992812_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098

Protein	Function_ID	Function_description	E-value
NZ_CP018056.1\|WP_002888329.1\|2989332_2990619_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP018056.1\|WP_016531719.1\|2974034_2974730_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP018056.1\|WP_011977646.1\|2970674_2972384_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP018056.1\|WP_002888348.1\|2980369_2981029_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP018056.1\|WP_004177428.1\|2981103_2981643_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	6.27126e-86
NZ_CP018056.1\|WP_004178576.1\|2974905_2977263_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP018056.1\|WP_002888373.1\|2968595_2969363_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP018056.1\|WP_004177424.1\|2972394_2973897_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP018056.1\|WP_002888345.1\|2981822_2983187_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP018056.1\|WP_002888332.1\|2985858_2986686_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP018056.1\|WP_002888320.1\|2994083_2994563_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP018056.1\|WP_004182906.1\|2985127_2985826_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.65624e-65
NZ_CP018056.1\|WP_004145972.1\|2969491_2970337_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP018056.1\|WP_002888324.1\|2991610_2992432_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP018056.1\|WP_004147026.1\|2986929_2989278_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP018056.1\|WP_004177426.1\|2977450_2980357_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP018056.1\|WP_032433044.1\|2983511_2985128_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	1.35845e-172
NZ_CP018056.1\|WP_002888321.1\|2992816_2993665_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP018056.1\|WP_002888327.1\|2990624_2991614_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP018056.1\|WP_002888323.1\|2992434_2992812_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74

>NZ_CP018056.1|WP_002888345.1|2981822_2983187_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP018056.1|WP_004177428.1|2981103_2981643_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIEALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP018056.1|WP_002888348.1|2980369_2981029_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP018056.1|WP_004177426.1|2977450_2980357_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP018056.1|WP_004178576.1|2974905_2977263_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP018056.1|WP_016531719.1|2974034_2974730_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP018056.1|WP_004177424.1|2972394_2973897_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP018056.1|WP_011977646.1|2970674_2972384_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP018056.1|WP_004145972.1|2969491_2970337_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP018056.1|WP_002888373.1|2968595_2969363_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP018056.1|WP_032433044.1|2983511_2985128_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPILDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAH
>NZ_CP018056.1|WP_004182906.1|2985127_2985826_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP018056.1|WP_002888332.1|2985858_2986686_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP018056.1|WP_004147026.1|2986929_2989278_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP018056.1|WP_002888329.1|2989332_2990619_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP018056.1|WP_002888327.1|2990624_2991614_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP018056.1|WP_002888324.1|2991610_2992432_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP018056.1|WP_002888323.1|2992434_2992812_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP018056.1|WP_002888321.1|2992816_2993665_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP018056.1|WP_002888320.1|2994083_2994563_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10490 : 16667

Klebsiella_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165451248.1\|10490_10640_-	hypothetical protein	A0A2H5BN82	Klebsiella_phage	8.8e-12	71.4
WP_099761790.1\|10648_11590_-	hypothetical protein	A0A2H5BN49	Klebsiella_phage	4.9e-164	89.1
WP_099761151.1\|12397_12946_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.0e-89	91.8
WP_168445798.1\|13399_14887_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.0e-31	35.5
WP_042937071.1\|15159_15531_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.4e-26	50.9
WP_004149224.1\|15737_16667_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	6.7e-134	81.4

DBSCAN-SWA_2

237180 : 244087

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180551.1\|237180_238044_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_023301146.1\|238054_238828_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-26	37.2
WP_004151134.1\|239070_239967_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|240209_241571_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|241889_242612_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|242608_244087_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

280655 : 288280

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152488.1\|280655_282062_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004152487.1\|282286_283351_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
WP_004152486.1\|283377_284247_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	67.0
WP_004152485.1\|284278_285169_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	33.6
WP_004152484.1\|285183_285738_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.8e-52	58.2
WP_004152483.1\|285918_287085_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004152482.1\|287278_288280_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	28.6

DBSCAN-SWA_4

1211433 : 1222321

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040189703.1\|1211433_1214541_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004176258.1\|1214595_1215861_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|1215891_1216980_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004183954.1\|1217066_1217327_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|1217624_1218485_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|1218505_1219267_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|1219528_1220431_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004190239.1\|1220442_1221708_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
WP_002210516.1\|1221700_1222321_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

1410473 : 1467310

Escherichia_phage(29.79%)

lysis,holin,terminase,integrase,tRNA,tail

attL 1432864:1432878|attR 1466926:1466940

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162859349.1\|1410473_1410623_+	hypothetical protein	A0A2H5BN82	Klebsiella_phage	3.0e-12	73.5
WP_099761332.1\|1410697_1411003_-	hypothetical protein	NA	NA	NA	NA
WP_099761334.1\|1413588_1416657_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	91.0
WP_004207032.1\|1416653_1417034_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.7e-67	92.9
WP_004207033.1\|1417163_1417433_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_023317176.1\|1417413_1417782_-	hypothetical protein	NA	NA	NA	NA
WP_065806091.1\|1417791_1418274_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	5.0e-80	91.2
WP_043875398.1\|1418270_1418735_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-52	59.2
WP_015958316.1\|1419048_1419384_-	hypothetical protein	NA	NA	NA	NA
WP_099761335.1\|1419467_1422581_-\|tail	phage tail length tape measure family protein	A0A2D1GPC9	Escherichia_phage	6.9e-90	32.1
WP_038421372.1\|1422681_1423149_-	hypothetical protein	NA	NA	NA	NA
WP_077256309.1\|1423387_1423753_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.5e-12	41.1
WP_071845752.1\|1424145_1424343_-	hypothetical protein	NA	NA	NA	NA
WP_026005925.1\|1424480_1424963_-	hypothetical protein	NA	NA	NA	NA
WP_099761337.1\|1425002_1425935_-	hypothetical protein	A0A0D4DBN5	Acinetobacter_phage	3.7e-23	27.0
WP_086071002.1\|1425958_1426351_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_012967909.1\|1426347_1426899_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_057214740.1\|1426900_1427284_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	4.6e-20	44.4
WP_099761338.1\|1427285_1427696_-	protein singed	A0A0H5AUF0	Pseudomonas_phage	5.1e-09	38.2
WP_072413058.1\|1427699_1427912_-	hypothetical protein	G8C7P8	Escherichia_phage	1.2e-09	55.2
WP_004184463.1\|1427951_1429088_-	hypothetical protein	G8C7P7	Escherichia_phage	2.8e-158	76.5
WP_004184465.1\|1429175_1429940_-	hypothetical protein	G8C7P6	Escherichia_phage	1.1e-76	59.4
WP_099761340.1\|1430046_1431159_-	hypothetical protein	I6PD76	Cronobacter_phage	9.0e-109	53.6
WP_099761342.1\|1431142_1432567_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.3e-192	71.3
WP_072045687.1\|1432571_1433876_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.2e-146	60.0
1432864:1432878	attL	NA	NA	NA	NA
WP_099761343.1\|1433853_1434858_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	4.5e-35	44.2
WP_099761345.1\|1434956_1435634_-	hypothetical protein	NA	NA	NA	NA
WP_163613273.1\|1436412_1436637_-	hypothetical protein	NA	NA	NA	NA
WP_014832162.1\|1437596_1437791_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_099761347.1\|1437777_1438050_+	hypothetical protein	NA	NA	NA	NA
WP_042935788.1\|1438206_1438479_+	hypothetical protein	NA	NA	NA	NA
WP_099761348.1\|1438479_1438944_-\|lysis	lysis protein	A5LH84	Enterobacteria_phage	4.2e-36	54.6
WP_099761350.1\|1438940_1439420_-	glycoside hydrolase family 104 protein	A5VW81	Enterobacteria_phage	7.1e-71	82.4
WP_023304961.1\|1439403_1439727_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	2.1e-42	81.3
WP_050888101.1\|1440474_1440861_+	hypothetical protein	NA	NA	NA	NA
WP_099761351.1\|1441235_1442033_-	antitermination protein	H6WRZ1	Salmonella_phage	3.5e-115	76.6
WP_099761353.1\|1442035_1442167_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	1.8e-08	71.1
WP_099761354.1\|1442163_1442508_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	2.3e-39	72.8
WP_099761356.1\|1442504_1442801_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	4.6e-36	71.9
WP_099761358.1\|1443009_1443606_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	2.5e-89	79.6
WP_132349619.1\|1443971_1444238_+	hypothetical protein	NA	NA	NA	NA
WP_086647621.1\|1444354_1444798_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_099761359.1\|1444950_1447041_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	6.9e-203	53.1
WP_032428063.1\|1447037_1447295_-	hypothetical protein	NA	NA	NA	NA
WP_015958290.1\|1447303_1447555_-	hypothetical protein	S5MQM0	Escherichia_phage	2.8e-10	52.8
WP_015958289.1\|1447551_1447752_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	6.7e-23	78.5
WP_099761361.1\|1447748_1448117_-	DUF977 family protein	H6WRX9	Salmonella_phage	5.7e-12	40.0
WP_004121629.1\|1448124_1448874_-	ATP-binding protein	H6WRX8	Salmonella_phage	7.1e-118	81.5
WP_172952748.1\|1448876_1449764_-	hypothetical protein	Q8HA96	Salmonella_phage	2.1e-23	52.2
WP_099761363.1\|1449781_1450576_-	hypothetical protein	C7BGF1	Burkholderia_phage	4.8e-64	51.7
WP_032427957.1\|1450704_1451241_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.5e-64	71.8
WP_032427956.1\|1451243_1451471_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	4.0e-24	70.3
WP_032427955.1\|1451576_1451963_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	4.3e-50	78.7
WP_063666496.1\|1452176_1453481_+	hypothetical protein	NA	NA	NA	NA
WP_153591391.1\|1454187_1454418_-	hypothetical protein	NA	NA	NA	NA
WP_023282477.1\|1454910_1455066_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
WP_099761364.1\|1455203_1458452_+	PD-(D/E)XK nuclease-like domain-containing protein	H6WRX1	Salmonella_phage	1.7e-277	54.1
WP_094339448.1\|1458464_1459574_+	recombinase RecT	H6WRX0	Salmonella_phage	2.0e-185	86.7
WP_172952749.1\|1459608_1460307_+	hypothetical protein	O03965	Myxococcus_phage	9.5e-40	41.6
WP_023159473.1\|1460303_1460612_+	hypothetical protein	I6PD68	Cronobacter_phage	7.1e-24	55.9
WP_032430507.1\|1460619_1460859_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.1e-31	82.1
WP_023159475.1\|1460923_1461136_+	excisionase family protein	A0A0U2RY08	Escherichia_phage	1.1e-23	71.8
WP_040206282.1\|1461137_1462376_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.3e-161	67.1
WP_004179591.1\|1462424_1463360_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.4e-139	94.1
WP_015958274.1\|1463405_1464779_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	32.3
WP_004148192.1\|1465304_1466288_-	zinc transporter ZntB	NA	NA	NA	NA
WP_020316476.1\|1466566_1467310_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	6.0e-16	30.5
1466926:1466940	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1859770 : 1884614

Pectobacterium_phage(29.17%)

protease,tail,integrase,head

attL 1852269:1852284|attR 1893157:1893172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1852269:1852284	attL	NA	NA	NA	NA
WP_004191050.1\|1859770_1860244_-	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3
WP_024623093.1\|1860282_1861278_-	hypothetical protein	W6MW28	Pseudomonas_phage	1.9e-105	60.6
WP_004191053.1\|1861288_1862047_-	hypothetical protein	NA	NA	NA	NA
WP_029503969.1\|1862033_1862357_-	hypothetical protein	NA	NA	NA	NA
WP_009308354.1\|1862359_1864024_-\|head,tail	head-tail connector protein	A0A221SAN2	Ralstonia_phage	5.3e-105	39.4
WP_009308353.1\|1864023_1865418_-	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	3.1e-58	36.9
WP_020947865.1\|1865502_1865955_-	hypothetical protein	A3EYX3	Salmonella_phage	1.5e-49	66.4
WP_009308351.1\|1865961_1866222_-	hypothetical protein	NA	NA	NA	NA
WP_048256716.1\|1866205_1866439_-	hypothetical protein	NA	NA	NA	NA
WP_048256713.1\|1866507_1866801_-	hypothetical protein	G8C7W3	Escherichia_phage	1.4e-29	70.1
WP_023316634.1\|1866797_1867154_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_072071501.1\|1867141_1867465_-	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	2.3e-25	55.8
WP_048256710.1\|1867454_1868048_-	DUF1367 family protein	H9C173	Pectobacterium_phage	2.7e-80	71.6
WP_029499143.1\|1868116_1868308_-	hypothetical protein	NA	NA	NA	NA
WP_048256707.1\|1868486_1868828_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	7.4e-46	82.0
WP_048256704.1\|1868840_1869458_-	HNH endonuclease	NA	NA	NA	NA
WP_009308338.1\|1869454_1869685_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.9e-06	38.7
WP_009308336.1\|1869687_1870278_-	adenine methylase	A0A2R9YJG0	Escherichia_phage	4.3e-94	84.7
WP_029499137.1\|1870405_1871191_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.5e-62	51.4
WP_004141586.1\|1871230_1871464_-	hypothetical protein	NA	NA	NA	NA
WP_009308333.1\|1871467_1872118_-	hypothetical protein	NA	NA	NA	NA
WP_048256698.1\|1872156_1873545_-	AAA family ATPase	Q8HA30	Enterobacteria_phage	3.4e-105	47.1
WP_162859350.1\|1873541_1874525_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	5.1e-39	72.9
WP_016197573.1\|1874527_1874686_-	hypothetical protein	NA	NA	NA	NA
WP_004199487.1\|1874769_1875216_-	hypothetical protein	H9C162	Pectobacterium_phage	7.4e-30	56.1
WP_024623103.1\|1875276_1875471_-	Cro/Cl family transcriptional regulator	K7PHK4	Enterobacteria_phage	1.7e-07	45.9
WP_024623104.1\|1875550_1875952_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.7e-39	60.2
WP_029499124.1\|1876892_1877126_+	hypothetical protein	NA	NA	NA	NA
WP_009308322.1\|1877133_1877379_+	hypothetical protein	A0A1B1W282	Salmonella_phage	1.8e-14	58.1
WP_099761400.1\|1877408_1879538_+	hypothetical protein	H9C157	Pectobacterium_phage	2.6e-96	34.3
WP_009308318.1\|1879537_1880104_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.5e-51	61.5
WP_004141609.1\|1880105_1880291_+	hypothetical protein	H9C155	Pectobacterium_phage	8.1e-07	44.3
WP_004199480.1\|1880500_1880725_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_073579172.1\|1880728_1881757_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-94	54.1
WP_023286208.1\|1882032_1883685_-	oligopeptide transport system substrate-binding protein	NA	NA	NA	NA
WP_002898458.1\|1883954_1884614_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
1893157:1893172	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2001060 : 2010534

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|2001060_2002782_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|2002826_2003528_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|2003881_2004100_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|2004230_2006510_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|2006540_2006858_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|2007183_2007405_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_025368306.1\|2007481_2009422_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.0e-38	41.0
WP_002896440.1\|2009418_2010534_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_8

5269621 : 5316444

Enterobacteria_phage(20.0%)

capsid,holin,terminase,integrase,tRNA,head,tail,protease,portal

attL 5286474:5286489|attR 5313216:5313231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002913437.1\|5269621_5271040_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_002913435.1\|5271091_5271484_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002913434.1\|5271487_5271841_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004151096.1\|5272462_5274634_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002913423.1\|5274682_5275885_-	nucleoside permease NupC	NA	NA	NA	NA
WP_002913421.1\|5276231_5277473_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_002913419.1\|5277530_5277890_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_004174934.1\|5278020_5279013_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_099761833.1\|5279193_5280855_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_023316074.1\|5280851_5282087_-	ion channel protein	NA	NA	NA	NA
WP_002913377.1\|5282350_5283316_+	glucokinase	NA	NA	NA	NA
WP_032419440.1\|5283369_5284107_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	3.2e-14	25.9
WP_004149230.1\|5284118_5285816_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
WP_004153200.1\|5285814_5285928_+	hypothetical protein	NA	NA	NA	NA
WP_004145585.1\|5285924_5286110_-	hypothetical protein	NA	NA	NA	NA
WP_002913372.1\|5286198_5287413_+	alanine transaminase	NA	NA	NA	NA
5286474:5286489	attL	NA	NA	NA	NA
WP_099119320.1\|5287483_5287555_-	membrane protein YpdK	NA	NA	NA	NA
WP_032428036.1\|5287893_5289090_-	cyanate transporter	NA	NA	NA	NA
WP_009486224.1\|5289086_5289545_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	1.6e-11	32.3
WP_004149227.1\|5289677_5290586_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
WP_009309554.1\|5290595_5291477_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_004174945.1\|5291844_5292327_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_099761771.1\|5292845_5294015_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	4.3e-202	85.8
WP_080850372.1\|5293998_5294184_-	hypothetical protein	G3CFG7	Escherichia_phage	2.1e-15	63.2
WP_099761773.1\|5294206_5294764_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	4.3e-67	64.3
WP_172952758.1\|5294765_5295362_-	DUF3850 domain-containing protein	A0A0P0I3U9	Klebsiella_phage	2.6e-14	56.2
WP_080850368.1\|5295358_5295586_-	hypothetical protein	NA	NA	NA	NA
WP_080850366.1\|5295586_5296018_-	ead/Ea22-like family protein	K7P6V8	Enterobacteria_phage	5.5e-06	40.7
WP_040209280.1\|5296010_5296274_-	DUF4752 family protein	T1S9K2	Salmonella_phage	2.2e-29	75.6
WP_099761775.1\|5296270_5296630_-	hypothetical protein	R9TME7	Aeromonas_phage	1.8e-10	36.2
WP_099761776.1\|5296757_5297543_-	hypothetical protein	C7BGF1	Burkholderia_phage	4.0e-63	52.9
WP_040186300.1\|5297542_5297842_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.0e-14	47.8
WP_099761778.1\|5297929_5298847_-	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	9.9e-45	36.2
WP_019705289.1\|5299117_5299762_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
WP_024176406.1\|5299856_5300066_+	cell division protein	NA	NA	NA	NA
WP_004213338.1\|5300091_5300553_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_001208720.1\|5300790_5300970_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_099761780.1\|5300959_5301928_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.4e-86	67.3
WP_099761781.1\|5301924_5302734_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.7e-109	69.3
WP_000779146.1\|5302743_5303121_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_099761783.1\|5303133_5304114_+	DUF968 domain-containing protein	S5FV02	Shigella_phage	7.6e-136	67.8
WP_099761784.1\|5304126_5304705_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.9e-50	56.7
WP_021313635.1\|5304855_5305095_+	hypothetical protein	NA	NA	NA	NA
WP_019704119.1\|5305255_5305480_+\|holin	class II holin family protein	M9NZI9	Enterobacteria_phage	4.0e-32	91.9
WP_021313634.1\|5305457_5305952_+	lysozyme	M9P0E5	Enterobacteria_phage	4.6e-89	95.7
WP_021313633.1\|5305948_5306299_+	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	7.6e-14	42.9
WP_032426669.1\|5306772_5307006_+	hypothetical protein	NA	NA	NA	NA
WP_021313631.1\|5307128_5307479_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.2e-51	80.9
WP_001119413.1\|5307635_5308133_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.4e-63	71.3
WP_099761786.1\|5308136_5309888_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	8.0e-253	72.7
WP_016530190.1\|5310035_5311262_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.2e-208	85.3
WP_000999827.1\|5311254_5311854_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
WP_058837099.1\|5311863_5313102_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	5.2e-158	69.2
WP_023316722.1\|5313179_5313497_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	4.8e-23	52.0
5313216:5313231	attR	NA	NA	NA	NA
WP_099761787.1\|5313505_5313847_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.8e-37	67.9
WP_019705270.1\|5313839_5314289_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
WP_016530186.1\|5314285_5314633_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
WP_023341477.1\|5314689_5315394_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	1.9e-80	66.9
WP_099761789.1\|5315424_5315829_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	2.5e-32	56.9
WP_016530183.1\|5315831_5316137_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530182.1\|5316210_5316444_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018056

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection