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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024632 Acinetobacter junii strain lzh-X15 chromosome, complete genome 2 crisprs cas3,DEDDh,csa3,WYL 1 6 2 0

Results visualization

1. NZ_CP024632
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024632_1 424822-425115 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024632_2 1451377-1452125 Orphan I-F
12 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP024632_1 1.2|424909|33|NZ_CP024632|CRT 424909-424941 33 NZ_CP024632.1 425116-425148 2 0.939

1. spacer 1.2|424909|33|NZ_CP024632|CRT matches to position: 425116-425148, mismatch: 2, identity: 0.939

cgaattcaattctgatcgtccacgtcgtgaagg	CRISPR spacer
cgagttcaattctgatcgcccacgtcgtgaagg	Protospacer
***.**************.**************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 MH617060 Inoviridae sp. isolate ctcg21, complete genome 4587-4618 2 0.938
NZ_CP024632_2 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451946-1451977 32 KT894027 Dishui lake virophage 1, complete genome 9688-9719 7 0.781
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 CP020760 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-21, complete sequence 6476-6507 7 0.781
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NC_005567 Bacillus thuringiensis H1.1 plasmid pGI3, complete sequence 4415-4446 7 0.781
NZ_CP024632_1 1.2|424909|33|NZ_CP024632|CRT 424909-424941 33 NZ_CP030363 Salinibacter ruber strain SP73 plasmid pSR118, complete sequence 70669-70701 8 0.758
NZ_CP024632_2 2.4|1451585|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451585-1451616 32 NZ_CP043858 Arcobacter cibarius strain H743 plasmid pACIB, complete sequence 129065-129096 8 0.75
NZ_CP024632_2 2.4|1451585|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451585-1451616 32 CP013001 Bacillus thuringiensis strain XL6 plasmid, complete sequence 113457-113488 8 0.75
NZ_CP024632_2 2.6|1451705|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451705-1451736 32 AP018319 Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome 52021-52052 8 0.75
NZ_CP024632_2 2.8|1451826|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451826-1451857 32 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 425082-425113 8 0.75
NZ_CP024632_2 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451946-1451977 32 GU071103 Prochlorococcus phage P-SSM7, complete genome 83379-83410 8 0.75
NZ_CP024632_2 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451946-1451977 32 MG250483 Aeromonas phage Ah1, complete genome 55593-55624 8 0.75
NZ_CP024632_2 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1451946-1451977 32 NC_023688 Aeromonas phage PX29, complete genome 56683-56714 9 0.719
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_CP004876 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence 141399-141430 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NC_017203 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence 173565-173596 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NC_020384 Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence 177790-177821 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_CP011350 Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence 706998-707029 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_CP015152 Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence 4871-4902 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_CP013056 Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence 26536-26567 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_CP004861 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence 138730-138761 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_AP014866 Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence 8828-8859 10 0.688
NZ_CP024632_2 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR 1452006-1452037 32 NZ_CP010091 Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence 133462-133493 10 0.688

1. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to MH617060 (Inoviridae sp. isolate ctcg21, complete genome) position: , mismatch: 2, identity: 0.938

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttatagaaaaatttataactatcttg	Protospacer
*****************.*****.********

2. spacer 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to KT894027 (Dishui lake virophage 1, complete genome) position: , mismatch: 7, identity: 0.781

acgctaaaacacaaacatcagaacaagcaacg	CRISPR spacer
attataaaacacaaacatcatcacaagcaccc	Protospacer
*.  ****************  ******* * 

3. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to CP020760 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-21, complete sequence) position: , mismatch: 7, identity: 0.781

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tctttcttatagaaacacctatagcaactttt	Protospacer
*.************* **.****** *..** 

4. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NC_005567 (Bacillus thuringiensis H1.1 plasmid pGI3, complete sequence) position: , mismatch: 7, identity: 0.781

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tctttcttatagaaacacctatagcaactttt	Protospacer
*.************* **.****** *..** 

5. spacer 1.2|424909|33|NZ_CP024632|CRT matches to NZ_CP030363 (Salinibacter ruber strain SP73 plasmid pSR118, complete sequence) position: , mismatch: 8, identity: 0.758

cgaattcaattctgatcgtccacg------tcgtgaagg	CRISPR spacer
cgaattccattctgatcgaccacggccatctcg------	Protospacer
******* ********** *****      ***      

6. spacer 2.4|1451585|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 8, identity: 0.75

tggctattcaactatgaaaaatgctttaacgt	CRISPR spacer
ttgcaattcaactatgaaagatgcttataaaa	Protospacer
* ** **************.******  * . 

7. spacer 2.4|1451585|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tggctattcaactatgaaaaatgctttaacgt	CRISPR spacer
attctagtcaactatgtaaaatgctttttagt	Protospacer
   *** ********* **********   **

8. spacer 2.6|1451705|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 8, identity: 0.75

acccaacagggtacaaaacttgatgtttcaca	CRISPR spacer
acccaacagggtacaaagctagagatgacgaa	Protospacer
*****************.** ** .*  *. *

9. spacer 2.8|1451826|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.75

gatcgaatttgggatgaaggtttaggtgtttc	CRISPR spacer
aataaacaatgggataaaggtttaggtgattc	Protospacer
.** .*   ******.************ ***

10. spacer 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to GU071103 (Prochlorococcus phage P-SSM7, complete genome) position: , mismatch: 8, identity: 0.75

acgctaaaacacaaacatcagaacaagcaacg	CRISPR spacer
atactaaaacacaaacctcagatcaaggtaat	Protospacer
*..************* ***** ****  *  

11. spacer 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to MG250483 (Aeromonas phage Ah1, complete genome) position: , mismatch: 8, identity: 0.75

acgctaaaacacaaacatcagaacaagcaacg	CRISPR spacer
actgatttacacatacaccagaacaagcaacg	Protospacer
**      ***** ***.**************

12. spacer 2.10|1451946|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NC_023688 (Aeromonas phage PX29, complete genome) position: , mismatch: 9, identity: 0.719

acgctaaaacacaaacatcagaacaagcaacg	CRISPR spacer
actgattgacaccaacaccagaacaagcaacc	Protospacer
**     .**** ****.************* 

13. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

14. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

15. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

16. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

17. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015152 (Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

18. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

19. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

20. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

21. spacer 2.11|1452006|32|NZ_CP024632|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 10, identity: 0.688

tttttcttatagaaaaacttatagctatcttg	CRISPR spacer
tttttcttattgaaaaatttatacgagtaaga	Protospacer
********** ******.*****   .*   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1121099 : 1131699 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_2 2666200 : 2734325 74 uncultured_Caudovirales_phage(79.49%) portal,tRNA,terminase,head,tail,plate,integrase,capsid attL 2707363:2707379|attR 2725685:2725701
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage