CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024645	Rhizobacter gummiphilus strain NBRC 109400 chromosome, complete genome	0 crisprs	csa3,DinG,RT,Cas9_archaeal,DEDDh,cas3,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

274266 : 346071

Faustovirus(10.0%)

protease,integrase,transposase,holin

attL 265125:265142|attR 348687:348704

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
265125:265142	attL	NA	NA	NA	NA
WP_085748877.1\|274266_275844_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_085748878.1\|275904_281664_+	alpha-2-macroglobulin	NA	NA	NA	NA
WP_085748879.1\|281684_283754_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_085748880.1\|283854_285057_+	alanine transaminase	A0A1X7QHI1	Faustovirus	2.0e-05	27.1
WP_085748881.1\|285093_285459_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_157131565.1\|285590_286343_+	TonB family protein	NA	NA	NA	NA
WP_085754001.1\|286405_287125_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_085748882.1\|287151_287571_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_085748883.1\|287574_287805_+	hemin uptake protein HemP	NA	NA	NA	NA
WP_085748884.1\|287890_289126_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_085748885.1\|289150_289876_+	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_085748886.1\|290047_292228_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_085748887.1\|292251_293445_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_085748888.1\|293460_295572_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_085748889.1\|295738_296368_+	PepSY-associated TM helix domain-containing protein	NA	NA	NA	NA
WP_085748890.1\|296398_296914_+	DUF2271 domain-containing protein	NA	NA	NA	NA
WP_085748891.1\|296945_297800_+	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_085748892.1\|297810_298824_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_085748893.1\|298820_300188_+	flavodoxin domain-containing protein	NA	NA	NA	NA
WP_085748894.1\|300195_300876_-	Fe2+-dependent dioxygenase	V5UR52	Synechococcus_phage	4.8e-20	36.9
WP_085748895.1\|300966_303264_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_085748896.1\|303519_304956_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_085748897.1\|304960_306946_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	3.7e-36	38.3
WP_085748898.1\|306945_308646_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_169726493.1\|308813_310331_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_099960020.1\|310323_311001_+	response regulator	NA	NA	NA	NA
WP_085748901.1\|311213_311627_+	hypothetical protein	NA	NA	NA	NA
WP_169726494.1\|311720_314522_-	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	4.5e-24	27.7
WP_085748903.1\|314745_315297_+	hypothetical protein	NA	NA	NA	NA
WP_157131566.1\|315376_315523_+	hypothetical protein	NA	NA	NA	NA
WP_157131567.1\|315615_316326_+	hypothetical protein	NA	NA	NA	NA
WP_085748905.1\|316330_319252_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	6.5e-292	53.9
WP_085748906.1\|319324_320338_-	hypothetical protein	NA	NA	NA	NA
WP_085748907.1\|320337_320964_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_085748908.1\|321107_322562_+	VWA domain-containing protein	NA	NA	NA	NA
WP_085748909.1\|322596_323490_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_085748910.1\|323497_323923_-	hypothetical protein	NA	NA	NA	NA
WP_085748911.1\|324066_325494_-	alpha/beta hydrolase	A0A1C9LYL3	Mycobacterium_phage	4.8e-06	27.7
WP_085748912.1\|325588_329230_+	hypothetical protein	NA	NA	NA	NA
WP_085748913.1\|329240_329708_-	response regulator transcription factor	NA	NA	NA	NA
WP_085748914.1\|329808_330105_-	hypothetical protein	NA	NA	NA	NA
WP_085748915.1\|330242_332129_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	3.1e-77	35.1
WP_085748916.1\|332221_333379_-	hypothetical protein	NA	NA	NA	NA
WP_085748917.1\|333507_334125_-	DUF502 domain-containing protein	NA	NA	NA	NA
WP_085748918.1\|334354_334855_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	1.5e-39	50.6
WP_085748919.1\|334988_336242_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_085748920.1\|336225_337761_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_174694872.1\|337757_339845_+\|integrase	integrase	NA	NA	NA	NA
WP_085748921.1\|339841_340276_+	hypothetical protein	NA	NA	NA	NA
WP_099959838.1\|340331_340847_-	hypothetical protein	NA	NA	NA	NA
WP_157131568.1\|340769_341030_+	hypothetical protein	NA	NA	NA	NA
WP_085748923.1\|341857_342211_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085754002.1\|342211_342520_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085748924.1\|343129_344680_+	DNA cytosine methyltransferase	G3CB01	Aeropyrum_pernix_spindle-shaped_virus	3.2e-19	25.2
WP_085748925.1\|344657_345116_-	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	1.3e-34	50.7
WP_085748926.1\|345120_346071_-\|transposase	IS481 family transposase	NA	NA	NA	NA
348687:348704	attR	NA	NA	NA	NA

DBSCAN-SWA_2

581300 : 588350

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085749116.1\|581300_582785_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	2.3e-43	32.8
WP_085749117.1\|582786_583377_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.7e-59	57.1
WP_085749118.1\|583378_584419_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.4e-76	43.8
WP_085749119.1\|584415_585204_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	7.6e-62	52.9
WP_099960024.1\|585215_585944_+	uracil-DNA glycosylase	A0A286RUF9	Beluga_whale_alphaherpesvirus	7.3e-43	44.5
WP_085749121.1\|585950_586544_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_085749122.1\|587159_588350_+	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	1.5e-13	28.8

DBSCAN-SWA_3

3197453 : 3205770

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085751234.1\|3197453_3198590_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.2e-10	38.5
WP_085751235.1\|3198651_3199374_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.6e-26	34.3
WP_085751236.1\|3199586_3202367_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	5.5e-14	37.5
WP_085751237.1\|3202593_3202914_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.1e-18	62.7
WP_085751238.1\|3203119_3203473_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	6.1e-11	40.7
WP_085751239.1\|3203469_3205770_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.4e-166	42.3

DBSCAN-SWA_4

5150117 : 5161102

Acanthocystis_turfacea_Chlorella_virus(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085752930.1\|5150117_5151584_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-48	32.1
WP_085752931.1\|5151671_5152727_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-89	48.6
WP_085752932.1\|5152723_5153617_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_085752933.1\|5153630_5154515_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.8e-99	60.6
WP_085752934.1\|5154514_5155066_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-47	57.1
WP_085754298.1\|5155267_5156680_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_085752935.1\|5156689_5157616_+	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	2.5e-96	55.6
WP_085752936.1\|5157647_5158769_+	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	5.1e-136	66.9
WP_085752937.1\|5158775_5160101_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.9e-82	39.2
WP_174694893.1\|5160097_5161102_+	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	1.2e-67	44.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage