CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP018651	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 chromosome, complete genome	2 crisprs	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	6	7
NZ_CP018653	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-2, complete sequence	0 crisprs	cas14j	0	1
NZ_CP018654	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-3, complete sequence	0 crisprs	NA	0	0
NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	0 crisprs	csa3	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018651_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018651_1

2503703-2504219

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRT

8 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP018651_1

>merge|NZ_CP018651|1|2503703-2504219|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACTGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTCGTGTTCCCCGCGCCAGCGGGGATAAACTGCCGTGCCTGTCCAGGACAAATTGCCGATTATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCTCTCATTAAAGGGGTTTCCATGTTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCGGTTTCGGTGGGGGCTGAATCCTGAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGACATTCTCGCTAGTCACGGTCATGTCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCGGTGTTCCCCTCGCCAGCGGGGATAAACCGAGTTACTGATGCAGACTGCGGATCTTAATCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP018651|1|1|2503703-2504158|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACTG	AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP018651|1|1|2503703-2504219|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACTG	AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP018651|1|1|2503703-2504217|CRT
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGAGGATTTCGCCGCGCTGTTGGCCTCCAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	TGCCGTGCCTGTCCAGGACAAATTGCCGATTATT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTGCTCTCATTAAAGGGGTTTCCATGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG
GTGTTCCCCTCGCCAGCGGGGATAAAC	CGAGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018651.1\|WP_000210451.1\|2498552_2499353_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP018651.1\|WP_001199961.1\|2502734_2503406_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP018651.1\|WP_001044459.1\|2493792_2494566_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP018651.1\|WP_000368579.1\|2514496_2516053_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP018651.1\|WP_000842512.1\|2497357_2497945_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP018651.1\|WP_000117945.1\|2516049_2516604_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018651.1\|WP_099800505.1\|2507787_2509500_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP018651.1\|WP_000178270.1\|2493266_2493773_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP018651.1\|WP_000036734.1\|2501300_2502599_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP018651.1\|WP_001079646.1\|2492248_2492785_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP018651.1\|WP_000108313.1\|2505202_2505565_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP018651.1\|WP_000206417.1\|2516617_2517676_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP018651.1\|WP_076734701.1\|2510423_2511377_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP018651.1\|WP_001207998.1\|2504317_2505115_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP018651.1\|WP_000832393.1\|2492781_2493252_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP018651.1\|WP_099800506.1\|2494578_2497278_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP018651.1\|WP_000210932.1\|2505988_2507788_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP018651.1\|WP_000039870.1\|2509601_2510336_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP018651.1\|WP_000029737.1\|2511821_2514485_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018651.1\|WP_000210863.1\|2499580_2501218_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NZ_CP018651.1\|WP_000210451.1\|2498552_2499353_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP018651.1\|WP_001199961.1\|2502734_2503406_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP018651.1\|WP_001044459.1\|2493792_2494566_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP018651.1\|WP_000368579.1\|2514496_2516053_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP018651.1\|WP_000842512.1\|2497357_2497945_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP018651.1\|WP_000117945.1\|2516049_2516604_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP018651.1\|WP_099800505.1\|2507787_2509500_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP018651.1\|WP_000178270.1\|2493266_2493773_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP018651.1\|WP_000036734.1\|2501300_2502599_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP018651.1\|WP_001079646.1\|2492248_2492785_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
NZ_CP018651.1\|WP_000108313.1\|2505202_2505565_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP018651.1\|WP_000206417.1\|2516617_2517676_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP018651.1\|WP_076734701.1\|2510423_2511377_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP018651.1\|WP_001207998.1\|2504317_2505115_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
NZ_CP018651.1\|WP_000832393.1\|2492781_2493252_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
NZ_CP018651.1\|WP_099800506.1\|2494578_2497278_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP018651.1\|WP_000210932.1\|2505988_2507788_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP018651.1\|WP_000039870.1\|2509601_2510336_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP018651.1\|WP_000029737.1\|2511821_2514485_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP018651.1\|WP_000210863.1\|2499580_2501218_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NZ_CP018651.1|WP_001199961.1|2502734_2503406_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP018651.1|WP_000036734.1|2501300_2502599_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP018651.1|WP_000210863.1|2499580_2501218_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP018651.1|WP_000210451.1|2498552_2499353_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP018651.1|WP_000842512.1|2497357_2497945_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP018651.1|WP_099800506.1|2494578_2497278_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEQELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP018651.1|WP_001044459.1|2493792_2494566_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP018651.1|WP_000178270.1|2493266_2493773_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP018651.1|WP_000832393.1|2492781_2493252_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP018651.1|WP_001079646.1|2492248_2492785_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP018651.1|WP_001207998.1|2504317_2505115_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP018651.1|WP_000108313.1|2505202_2505565_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP018651.1|WP_000210932.1|2505988_2507788_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP018651.1|WP_099800505.1|2507787_2509500_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSVEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP018651.1|WP_000039870.1|2509601_2510336_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP018651.1|WP_076734701.1|2510423_2511377_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSSDKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP018651.1|WP_000029737.1|2511821_2514485_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP018651.1|WP_000368579.1|2514496_2516053_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP018651.1|WP_000117945.1|2516049_2516604_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP018651.1|WP_000206417.1|2516617_2517676_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA

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Crispr_ID: NZ_CP018651_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018651_2

2520372-2520705

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP018651_2

>merge|NZ_CP018651|2|2520372-2520705|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGTTGGCTGAAAACGGTTTTTCGGTCCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAGCGAGCACGTCCGCCGTAAAATTGCCATGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATATGGCGCTCACGCGCATGAGCATTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACGAGGGCCCCCTTATTGGGTCGGGCAGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGGTTGCATAGATGACACGCTTATAAATAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP018651|2|2|2520372-2520705|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGAGCACGTCCGCCGTAAAATTGCCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP018651|2|2|2520372-2520705|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGAGCACGTCCGCCGTAAAATTGCCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018651.1\|WP_000368579.1\|2514496_2516053_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP018651.1\|WP_000517480.1\|2525530_2525842_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP018651.1\|WP_001118109.1\|2524983_2525340_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP018651.1\|WP_000372384.1\|2522016_2522925_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP018651.1\|WP_001092251.1\|2522934_2524374_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP018651.1\|WP_001173663.1\|2524360_2524966_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP018651.1\|WP_000281483.1\|2518414_2519065_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP018651.1\|WP_000134246.1\|2527046_2528096_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP018651.1\|WP_000039870.1\|2509601_2510336_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP018651.1\|WP_000206417.1\|2516617_2517676_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP018651.1\|WP_001219253.1\|2526570_2527050_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP018651.1\|WP_076734701.1\|2510423_2511377_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP018651.1\|WP_000117945.1\|2516049_2516604_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018651.1\|WP_000085115.1\|2517686_2518433_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP018651.1\|WP_000144830.1\|2519061_2519982_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP018651.1\|WP_000741653.1\|2525860_2526571_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP018651.1\|WP_001221538.1\|2528076_2528838_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP018651.1\|WP_000490481.1\|2520719_2521766_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP018651.1\|WP_001518648.1\|2519981_2520275_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP018651.1\|WP_000029737.1\|2511821_2514485_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NZ_CP018651.1\|WP_000368579.1\|2514496_2516053_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP018651.1\|WP_000517480.1\|2525530_2525842_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP018651.1\|WP_001118109.1\|2524983_2525340_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP018651.1\|WP_000372384.1\|2522016_2522925_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP018651.1\|WP_001092251.1\|2522934_2524374_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP018651.1\|WP_001173663.1\|2524360_2524966_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP018651.1\|WP_000281483.1\|2518414_2519065_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP018651.1\|WP_000134246.1\|2527046_2528096_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP018651.1\|WP_000039870.1\|2509601_2510336_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP018651.1\|WP_000206417.1\|2516617_2517676_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP018651.1\|WP_001219253.1\|2526570_2527050_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NZ_CP018651.1\|WP_076734701.1\|2510423_2511377_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP018651.1\|WP_000117945.1\|2516049_2516604_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP018651.1\|WP_000085115.1\|2517686_2518433_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP018651.1\|WP_000144830.1\|2519061_2519982_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
NZ_CP018651.1\|WP_000741653.1\|2525860_2526571_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP018651.1\|WP_001221538.1\|2528076_2528838_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP018651.1\|WP_000490481.1\|2520719_2521766_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP018651.1\|WP_001518648.1\|2519981_2520275_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP018651.1\|WP_000029737.1\|2511821_2514485_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>NZ_CP018651.1|WP_001518648.1|2519981_2520275_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP018651.1|WP_000144830.1|2519061_2519982_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP018651.1|WP_000281483.1|2518414_2519065_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP018651.1|WP_000085115.1|2517686_2518433_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP018651.1|WP_000206417.1|2516617_2517676_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP018651.1|WP_000117945.1|2516049_2516604_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP018651.1|WP_000368579.1|2514496_2516053_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP018651.1|WP_000029737.1|2511821_2514485_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP018651.1|WP_076734701.1|2510423_2511377_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSSDKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP018651.1|WP_000039870.1|2509601_2510336_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP018651.1|WP_000490481.1|2520719_2521766_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP018651.1|WP_000372384.1|2522016_2522925_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP018651.1|WP_001092251.1|2522934_2524374_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP018651.1|WP_001173663.1|2524360_2524966_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP018651.1|WP_001118109.1|2524983_2525340_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP018651.1|WP_000517480.1|2525530_2525842_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP018651.1|WP_000741653.1|2525860_2526571_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP018651.1|WP_001219253.1|2526570_2527050_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP018651.1|WP_000134246.1|2527046_2528096_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP018651.1|WP_001221538.1|2528076_2528838_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018651_1	1.6\|2504037\|32\|NZ_CP018651\|PILER-CR,CRISPRCasFinder	2504037-2504068	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
NZ_CP018651_1	1.14\|2504035\|34\|NZ_CP018651\|CRT	2504035-2504068	34	MN694003	Marine virus AFVG_250M677, complete genome	17627-17660	8	0.765
NZ_CP018651_1	1.1\|2503732\|32\|NZ_CP018651\|PILER-CR,CRISPRCasFinder	2503732-2503763	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
NZ_CP018651_2	2.3\|2520523\|32\|NZ_CP018651\|CRISPRCasFinder,CRT	2520523-2520554	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
NZ_CP018651_2	2.5\|2520645\|32\|NZ_CP018651\|CRISPRCasFinder,CRT	2520645-2520676	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP018651_1	1.1\|2503732\|32\|NZ_CP018651\|PILER-CR,CRISPRCasFinder	2503732-2503763	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688
NZ_CP018651_1	1.3\|2503854\|32\|NZ_CP018651\|PILER-CR,CRISPRCasFinder	2503854-2503885	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	103231-103262	10	0.688

1. spacer 1.6|2504037|32|NZ_CP018651|PILER-CR,CRISPRCasFinder matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cggtcgcagcctggcctgttgccgtagaatcg	CRISPR spacer
cgatcgcagcctgggctgttgccgtgctcgcc	Protospacer
**.*********** **********.    *

2. spacer 1.14|2504035|34|NZ_CP018651|CRT matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.765

cgcggtcgcagcctggcctgttgccgtagaatcg	CRISPR spacer
cgcgatcgcagcctgggctgttgccgtgctcgcc	Protospacer
****.*********** **********.    *

3. spacer 1.1|2503732|32|NZ_CP018651|PILER-CR,CRISPRCasFinder matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

aggatttcgccgcgctgttggcctccagattc	CRISPR spacer
cagggtcgaccgcgctgtcgccctccagattc	Protospacer
 .*. *. .*********.* ***********

4. spacer 2.3|2520523|32|NZ_CP018651|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

aatatatggcgctcacgcgcatgagcattctc	CRISPR spacer
acgcaatggcgctgacgcgcatgatcatttcg	Protospacer
*    ******** ********** ****..

5. spacer 2.5|2520645|32|NZ_CP018651|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

gttgggttgcatagatgacacgcttataaata	CRISPR spacer
gaattatggcatagatgacatgattataaatt	Protospacer
*    .* ************.* ********

6. spacer 1.1|2503732|32|NZ_CP018651|PILER-CR,CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

aggatttcgccgcgctgttggcctccagattc	CRISPR spacer
gggatatcgccgcgctgatggcctatgaccac	Protospacer
.**** *********** ****** ... . *

7. spacer 1.3|2503854|32|NZ_CP018651|PILER-CR,CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ttgctctcattaaaggggtttccatgtttgat	CRISPR spacer
gattcgtcattacagtggtttccatgttttag	Protospacer
   .. ****** ** ************* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3221036 : 3230207

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|3221036_3221984_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|3221967_3222699_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|3222679_3222787_-	protein YohO	NA	NA	NA	NA
WP_001240421.1\|3222846_3223578_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.7e-100	87.4
WP_000272845.1\|3223800_3225486_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_000598637.1\|3225482_3226202_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950414.1\|3226248_3226716_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
WP_001197951.1\|3226772_3227303_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703145.1\|3227474_3227933_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
WP_000195340.1\|3228173_3230207_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_2

3297405 : 3307912

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144951.1\|3297405_3298809_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
WP_000981469.1\|3298986_3299880_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|3300256_3301342_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023658.1\|3301341_3302241_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_058106732.1\|3302288_3303167_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
WP_000973709.1\|3303167_3303719_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_000018223.1\|3303724_3304699_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|3304714_3305488_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565913.1\|3305492_3306572_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000126349.1\|3306598_3307912_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_3

3599260 : 3643806

Enterobacteria_phage(62.16%)

head,capsid,lysis,integrase,holin,tRNA,terminase,tail,plate,portal

attL 3606548:3606572|attR 3644850:3644874

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144217.1\|3599260_3601189_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.5e-130	37.7
WP_001574431.1\|3601192_3601735_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.8e-15	32.7
WP_001124225.1\|3601830_3602028_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_000124850.1\|3602078_3602435_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_001386830.1\|3602555_3602600_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000018570.1\|3602736_3603720_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-33	38.5
WP_000672408.1\|3603735_3606123_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_001229266.1\|3606127_3606427_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
3606548:3606572	attL	NA	NA	NA	NA
WP_023229131.1\|3606782_3606923_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	3.1e-11	71.7
WP_024143245.1\|3607156_3607417_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_076734539.1\|3607471_3608593_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.1e-149	74.5
WP_045900664.1\|3608750_3609938_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.8e-185	81.7
WP_000115856.1\|3609938_3610451_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.6e-63	68.0
WP_078057118.1\|3610493_3610850_+\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	3.4e-17	52.6
WP_099800470.1\|3610855_3611014_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	6.9e-15	77.6
WP_076734538.1\|3611000_3613961_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	3.4e-256	51.7
WP_000980424.1\|3613974_3614463_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.5e-71	79.5
WP_058106670.1\|3614614_3615481_+	hypothetical protein	A0A1S6KZZ8	Salmonella_phage	2.2e-147	91.7
WP_076734537.1\|3615483_3616017_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	6.7e-78	80.9
WP_078057117.1\|3616020_3616638_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	3.0e-98	86.7
WP_076734536.1\|3616607_3618656_-\|tail	phage tail protein	Q8HAB4	Salmonella_phage	2.2e-217	89.8
WP_058106667.1\|3618661_3619189_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	4.2e-56	60.6
WP_045900654.1\|3619181_3620078_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.5e-106	69.1
WP_001658912.1\|3620064_3620433_-\|plate	phage baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	6.5e-40	71.3
WP_058106666.1\|3620429_3621020_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.4e-68	68.6
WP_048590845.1\|3621016_3621652_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.0e-64	59.8
WP_058106665.1\|3621648_3622095_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.5e-33	47.1
WP_058106664.1\|3622081_3622573_-\|lysis	lysis protein	S4TNN7	Salmonella_phage	2.7e-33	56.9
WP_050154612.1\|3622579_3623023_-	lysozyme	A0A075B8L0	Enterobacteria_phage	8.1e-45	63.2
WP_001658928.1\|3623019_3623358_-\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_001658929.1\|3623387_3623588_-	Tail component protein	A0A0A7NV57	Enterobacteria_phage	1.9e-22	80.3
WP_045900648.1\|3623587_3624082_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.2e-51	60.1
WP_058106662.1\|3624184_3625015_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.1e-90	65.5
WP_058106661.1\|3625061_3626147_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	3.8e-136	68.4
WP_099800469.1\|3626170_3627007_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	2.8e-99	65.5
WP_045900644.1\|3627163_3628897_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.7e-263	75.1
WP_058106659.1\|3628896_3629946_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	5.6e-153	73.9
WP_153302029.1\|3630995_3632711_+	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	6.4e-138	54.4
WP_058106657.1\|3633563_3633827_+	transcriptional regulator	NA	NA	NA	NA
WP_048590832.1\|3633926_3634340_-	hypothetical protein	NA	NA	NA	NA
WP_058106656.1\|3634332_3636837_-	replication protein	A0A0M4RTM8	Salmonella_phage	6.0e-177	47.4
WP_099800468.1\|3636833_3637853_-	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	6.7e-127	67.5
WP_058106654.1\|3637849_3638353_-	hypothetical protein	NA	NA	NA	NA
WP_048590829.1\|3638346_3639312_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B2IH14	Erwinia_phage	3.1e-57	42.4
WP_058106653.1\|3639308_3639548_-	hypothetical protein	NA	NA	NA	NA
WP_058106652.1\|3639544_3640078_-	hypothetical protein	NA	NA	NA	NA
WP_058106651.1\|3640065_3640323_-	hypothetical protein	NA	NA	NA	NA
WP_058106650.1\|3640319_3640760_-	hypothetical protein	NA	NA	NA	NA
WP_023170322.1\|3640835_3641027_-	hypothetical protein	NA	NA	NA	NA
WP_020844112.1\|3640996_3641200_-	LapA family protein	NA	NA	NA	NA
WP_058106649.1\|3641520_3641919_-	hypothetical protein	NA	NA	NA	NA
WP_058343723.1\|3642078_3642357_-	hypothetical protein	NA	NA	NA	NA
WP_058106648.1\|3642451_3642763_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	5.4e-19	48.5
WP_058106647.1\|3642852_3643806_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	2.0e-77	48.6
3644850:3644874	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3980593 : 3991381

Escherichia_phage(72.73%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000640113.1\|3980593_3981130_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.4e-70	70.9
WP_000774470.1\|3981126_3981417_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.1e-40	76.0
WP_000940751.1\|3981416_3982016_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.5e-97	82.9
WP_000882662.1\|3982539_3982752_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_000556389.1\|3983121_3984054_+	hypothetical protein	NA	NA	NA	NA
WP_001033796.1\|3984050_3984605_+	hypothetical protein	NA	NA	NA	NA
WP_001676916.1\|3984766_3985096_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.5e-23	51.7
WP_001227859.1\|3985368_3985836_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
WP_085981757.1\|3986221_3986377_+	DUF1391 family protein	M4QQ57	Salicola_phage	2.6e-06	48.9
WP_000004762.1\|3986484_3987006_-	hypothetical protein	NA	NA	NA	NA
WP_000560208.1\|3987443_3987665_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
WP_000800272.1\|3987749_3988067_+	hypothetical protein	NA	NA	NA	NA
WP_001676915.1\|3988094_3988712_+	exodeoxyribonuclease	A0A088CD28	Shigella_phage	2.5e-36	41.9
WP_001156217.1\|3989028_3989964_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
WP_000123686.1\|3990007_3991381_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0

DBSCAN-SWA_5

4215980 : 4232096

Salmonella_phage(28.57%)

lysis,integrase,holin,tail

attL 4212610:4212639|attR 4232232:4232261

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4212610:4212639	attL	NA	NA	NA	NA
WP_072100756.1\|4215980_4216844_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
WP_099828410.1\|4216834_4219201_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	67.7
WP_001152415.1\|4219485_4220181_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000877926.1\|4220270_4220804_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001541990.1\|4221698_4222178_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000984586.1\|4222195_4222648_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001574216.1\|4222631_4222961_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001574215.1\|4223236_4223923_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_000798708.1\|4224283_4224733_+	hypothetical protein	NA	NA	NA	NA
WP_001574213.1\|4225106_4225631_-	hypothetical protein	NA	NA	NA	NA
WP_001097218.1\|4225727_4226417_-	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-60	54.9
WP_000784710.1\|4226546_4226774_-	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
WP_058106734.1\|4226770_4227370_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.4e-95	82.4
WP_000972675.1\|4227433_4227739_-	hypothetical protein	NA	NA	NA	NA
WP_001237395.1\|4228370_4230350_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_001575998.1\|4230763_4231042_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
WP_000087636.1\|4231016_4232096_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
4232232:4232261	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4404488 : 4490403

Salmonella_phage(40.35%)

head,tail,capsid,lysis,protease,integrase,tRNA,terminase,portal

attL 4463315:4463330|attR 4487903:4487918

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938186.1\|4404488_4405169_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.2e-81	71.0
WP_000374046.1\|4405787_4406447_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904449.1\|4406533_4406863_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|4406859_4407141_-	acylphosphatase	NA	NA	NA	NA
WP_000548080.1\|4407189_4407969_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859416.1\|4407994_4408543_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140478.1\|4408757_4409969_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|4410026_4410344_+	heat shock protein HspQ	NA	NA	NA	NA
WP_000975204.1\|4410388_4410805_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|4410975_4411638_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|4411732_4412191_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420505.1\|4412226_4414281_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_001261222.1\|4414404_4414851_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950876.1\|4414869_4417023_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|4417009_4417615_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288733.1\|4417831_4418341_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001674965.1\|4418697_4419750_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|4419821_4420274_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156448.1\|4420459_4422220_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|4422288_4422807_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|4422906_4423074_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|4423329_4423893_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433414.1\|4423889_4425530_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333139.1\|4425534_4426788_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|4426802_4428710_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086485.1\|4428722_4430831_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224079.1\|4430929_4432039_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001574119.1\|4432035_4432578_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|4432743_4433754_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193790.1\|4433961_4436574_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
WP_000497441.1\|4437000_4437192_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_001525490.1\|4437462_4438149_+	hypothetical protein	NA	NA	NA	NA
WP_031603423.1\|4438133_4438433_+	hypothetical protein	NA	NA	NA	NA
WP_000334547.1\|4438501_4439128_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_099800438.1\|4439775_4440744_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	1.5e-192	99.1
WP_000143167.1\|4441219_4441801_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_000178849.1\|4444292_4444535_-	hypothetical protein	NA	NA	NA	NA
WP_099800437.1\|4444573_4445437_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
WP_099800563.1\|4445432_4447793_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	67.9
WP_000246065.1\|4447996_4448701_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000606351.1\|4448598_4449336_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_001152415.1\|4449345_4450041_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000877926.1\|4450130_4450664_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_000725267.1\|4450780_4451278_-	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000978295.1\|4451376_4451709_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_001175132.1\|4452823_4453126_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	2.8e-25	58.6
WP_000478854.1\|4453146_4453536_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.5e-31	58.9
WP_000126419.1\|4453584_4454337_-\|tail	tail protein	A5LH35	Enterobacteria_phage	1.9e-94	70.0
WP_001032919.1\|4454349_4454751_-	hypothetical protein	A0A291AWY2	Escherichia_phage	8.1e-44	59.8
WP_000053601.1\|4454750_4455350_-\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	8.3e-69	68.7
WP_000083787.1\|4455359_4455716_-\|tail	tail attachment protein	K7P6U9	Enterobacteria_phage	1.8e-31	58.5
WP_000448213.1\|4455726_4456101_-	DNA breaking-rejoining protein	A0A2R9YJP4	Escherichia_phage	4.8e-06	34.9
WP_001048356.1\|4456164_4457193_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	2.4e-108	58.4
WP_000143301.1\|4457247_4457595_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	4.6e-19	52.7
WP_023233092.1\|4457594_4459109_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.1e-100	51.8
WP_099800436.1\|4459098_4460685_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.9e-184	60.5
WP_000224407.1\|4460681_4460885_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.0e-18	80.0
WP_021000150.1\|4460868_4462803_-\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	7.0e-258	66.1
WP_000867564.1\|4462774_4463320_-\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
4463315:4463330	attL	NA	NA	NA	NA
WP_099800562.1\|4463788_4464229_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	6.2e-53	78.0
WP_024798992.1\|4464249_4464738_-	lysozyme	M9P0E5	Enterobacteria_phage	1.0e-56	68.1
WP_001526513.1\|4464715_4465018_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001534381.1\|4465220_4465409_-	hypothetical protein	NA	NA	NA	NA
WP_051124474.1\|4465718_4466399_-	antiterminator	I6PDF8	Cronobacter_phage	1.4e-59	53.1
WP_000801757.1\|4466395_4466536_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_051124475.1\|4466532_4467144_-	protein ninG	A0A0M4RU10	Salmonella_phage	7.9e-91	96.6
WP_000929790.1\|4467352_4467955_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_014343878.1\|4467989_4468238_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|4468354_4468588_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000802853.1\|4468835_4469162_-	hypothetical protein	NA	NA	NA	NA
WP_107251218.1\|4469255_4469324_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_000132543.1\|4469304_4470522_-	hypothetical protein	J9Q803	Salmonella_phage	3.1e-118	53.3
WP_000974174.1\|4470832_4471078_-	hypothetical protein	Q5G8U9	Enterobacteria_phage	3.0e-33	88.9
WP_000065089.1\|4471077_4471398_-	hypothetical protein	H6WRY0	Salmonella_phage	6.7e-25	65.5
WP_000113626.1\|4471394_4471742_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.5e-59	100.0
WP_000800016.1\|4471752_4472502_-	ATP-binding protein	H6WRX8	Salmonella_phage	6.6e-140	100.0
WP_099800435.1\|4472504_4473560_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.9e-40	53.2
WP_072208318.1\|4473574_4473763_-	hypothetical protein	NA	NA	NA	NA
WP_010835408.1\|4473854_4474229_-	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_051124477.1\|4474194_4474431_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.6e-26	71.8
WP_015406390.1\|4474535_4474931_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	3.5e-47	72.5
WP_023226317.1\|4475000_4476062_+	hypothetical protein	NA	NA	NA	NA
WP_038988958.1\|4476039_4476411_+	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.5e-31	50.0
WP_000917563.1\|4477039_4477198_+	hypothetical protein	H6WRX3	Salmonella_phage	2.4e-23	100.0
WP_022742800.1\|4477219_4477570_+	hypothetical protein	S4TSN6	Salmonella_phage	6.4e-61	98.3
WP_051124479.1\|4477696_4480624_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	98.8
WP_001539618.1\|4480586_4481744_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|4481786_4482026_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|4482066_4482315_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262311.1\|4482359_4483652_+\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.3e-252	99.8
WP_099800434.1\|4483846_4485049_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000893200.1\|4485126_4486563_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000544855.1\|4486808_4488023_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
4487903:4487918	attR	NA	NA	NA	NA
WP_000762342.1\|4488340_4488802_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117867.1\|4489002_4490403_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8

DBSCAN-SWA_7

4554931 : 4562244

Ralstonia_phage(16.67%)

protease,integrase

attL 4549728:4549742|attR 4560980:4560994

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4549728:4549742	attL	NA	NA	NA	NA
WP_001539594.1\|4554931_4555309_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|4555470_4555668_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|4555880_4558157_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|4558187_4558508_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|4558831_4559053_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125875.1\|4559182_4561129_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
4560980:4560994	attR	NA	NA	NA	NA
WP_099800433.1\|4561125_4562244_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018652

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80550 : 114541

Salmonella_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000125667.1\|80550_81957_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000627692.1\|82008_83055_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_001109100.1\|83262_84015_-	hypothetical protein	NA	NA	NA	NA
WP_001339197.1\|84139_85348_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_000428546.1\|85861_86455_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001089068.1\|86567_87773_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_001322387.1\|87851_88478_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001284954.1\|88455_89142_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_089508164.1\|89149_89536_-	amino acid-binding protein	NA	NA	NA	NA
WP_001339197.1\|89510_90719_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_000562370.1\|90866_91187_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000599533.1\|91630_92836_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_001339175.1\|93201_94410_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	2.3e-235	99.8
WP_072075284.1\|94591_95524_-	hypothetical protein	NA	NA	NA	NA
WP_000173535.1\|95520_96036_-	thermonuclease family protein	V5UN65	Mycobacterium_phage	1.2e-07	28.3
WP_000286633.1\|96258_97686_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	2.8e-102	55.6
WP_011011077.1\|97814_97985_+	hypothetical protein	NA	NA	NA	NA
WP_000529858.1\|98009_99329_+	DUF1173 family protein	NA	NA	NA	NA
WP_000323423.1\|99342_99546_+	hypothetical protein	NA	NA	NA	NA
WP_010892342.1\|99600_100821_-	hypothetical protein	NA	NA	NA	NA
WP_000272280.1\|100823_101012_-	hypothetical protein	NA	NA	NA	NA
WP_000062400.1\|101180_101636_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_024156254.1\|102143_102812_+	hypothetical protein	NA	NA	NA	NA
WP_016695105.1\|102808_103081_+	hypothetical protein	NA	NA	NA	NA
WP_001287388.1\|103342_103747_+	H-NS histone family protein	NA	NA	NA	NA
WP_010892346.1\|104514_104964_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	5.8e-06	35.4
WP_011011075.1\|105271_105691_-	hypothetical protein	NA	NA	NA	NA
WP_001209044.1\|105796_106603_-	HNH endonuclease	G0X580	Salmonella_phage	1.3e-13	37.9
WP_024156253.1\|107008_107266_-	hypothetical protein	NA	NA	NA	NA
WP_016695101.1\|107602_107995_-	hypothetical protein	NA	NA	NA	NA
WP_011011074.1\|108061_108262_-	hypothetical protein	NA	NA	NA	NA
WP_000111573.1\|108251_108527_-	hypothetical protein	NA	NA	NA	NA
WP_000416123.1\|108674_109151_+	hypothetical protein	NA	NA	NA	NA
WP_016695100.1\|109186_109330_+	hypothetical protein	NA	NA	NA	NA
WP_001138082.1\|109722_112608_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-190	39.9
WP_000904906.1\|112733_113348_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
WP_085959879.1\|113412_114541_+\|transposase	IS3-like element IS1133 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-52	41.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018653

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40211 : 47119

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001541564.1\|40211_40628_+	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9
WP_001527010.1\|40811_41147_+	hypothetical protein	NA	NA	NA	NA
WP_000176303.1\|41203_41809_+	DUF2913 family protein	NA	NA	NA	NA
WP_000728919.1\|41805_42747_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	4.7e-74	54.7
WP_000427676.1\|43161_44367_+	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_099828418.1\|44363_45341_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	6.7e-84	53.5
WP_000457542.1\|45422_46697_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.9e-156	64.5
WP_000925628.1\|46696_47119_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.0e-29	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018651

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018652

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018653

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection