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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024650 Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome 5 crisprs cas3,DEDDh,DinG,csa3,RT,PD-DExK,WYL 0 5 8 0
NZ_CP024651 Escherichia coli strain BH100 substr. MG2014 plasmid pAp, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP024652 Escherichia coli strain BH100 substr. MG2014 plasmid pBH100-1, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP024650
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024650_1 938483-938630 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024650_2 2413099-2413212 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024650_3 4298016-4298217 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024650_4 4358552-4358678 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024650_5 4793510-4793649 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 271-327 5 0.912
NZ_CP024650_1 1.2|938571|32|NZ_CP024650|CRISPRCasFinder 938571-938602 32 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 83332-83363 8 0.75
NZ_CP024650_3 3.2|4298151|56|NZ_CP024650|PILER-CR 4298151-4298206 56 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 13988-14043 9 0.839
NZ_CP024650_3 3.2|4298151|56|NZ_CP024650|PILER-CR 4298151-4298206 56 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87116-87171 11 0.804
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12113-12164 11 0.788
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 272-323 11 0.788
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31252-31303 11 0.788
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30155-30211 12 0.789
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 43-99 13 0.772
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 42-98 13 0.772
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18328-18384 13 0.772
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 42-98 13 0.772
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 42-98 13 0.772
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208982-209033 13 0.75
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219476-219527 13 0.75
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210310-210361 13 0.75
NZ_CP024650_5 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder 4793554-4793605 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191265-191316 13 0.75
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87115-87171 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229227-229283 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229328-229384 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229429-229485 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4114-4170 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239721-239777 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239822-239878 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239923-239979 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4113-4169 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230633-230689 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230734-230790 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230835-230891 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4113-4169 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211603-211659 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211704-211760 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211805-211861 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4113-4169 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7392-7448 14 0.754
NZ_CP024650_4 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder 4358587-4358643 57 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84216-84272 14 0.754
NZ_CP024650_3 3.1|4298052|63|NZ_CP024650|PILER-CR 4298052-4298114 63 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87115-87177 15 0.762

1. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 5, identity: 0.912

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac-aactattgccgacct	CRISPR spacer
atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaaccgttaccgact-	Protospacer
****************************************** ***..**.*****. 

2. spacer 1.2|938571|32|NZ_CP024650|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgccgcggatcctgtctgccaataatgacaa	CRISPR spacer
ctggacggcatcctgtctgccaattttgacaa	Protospacer
.**    * ***************  ******

3. spacer 3.2|4298151|56|NZ_CP024650|PILER-CR matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.839

tacag-tgcccgatgcgacgctgccgcgtcttatcgggcctacaaa-agttctgaacc	CRISPR spacer
-acggatgcccgatgcgacgctggcgcgtcttatcgggcctacaaacggccccgaat-	Protospacer
 **.* ***************** ********************** .*..*.***. 

4. spacer 3.2|4298151|56|NZ_CP024650|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.804

tacagtgcccgatgcgacgctgccgcgtcttatcgggcctacaaaagttctgaacc----	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaa----tcaatcgctt	Protospacer
.**..****.************************.***********    * **.*    

5. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *  ***************** *******.***************.   .*.

6. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 *  *************************.***********.*. .*. *.* 

7. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 *  *************************.***********..  .*. ***  

8. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.789

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa-ctattgccgacct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcacccgaac-	Protospacer
 ...****************** ************ ******** **..  **** * 

9. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

10. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

11. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

12. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

13. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***   

14. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

15. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

16. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

17. spacer 5.1|4793554|52|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.    

18. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaatcaatcgcttt	Protospacer
  *.******************.*********************   . ..** ..*

19. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

20. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

21. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

22. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

23. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

24. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

25. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

26. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

27. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

28. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

29. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

30. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

31. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

32. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

33. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

34. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**   

35. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**  

36. spacer 4.1|4358587|57|NZ_CP024650|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**  

37. spacer 3.1|4298052|63|NZ_CP024650|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.762

ttggtgcacgatgcctgatgcgacgctggcgcgtcttatcaggcctacattggtgccgga	CRISPR spacer
tcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctaca--------aaa	Protospacer
*.************************** ********************        ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 256757 : 307032 44 Streptococcus_phage(22.22%) transposase,plate NA
DBSCAN-SWA_2 599195 : 665620 60 Bacillus_phage(23.08%) tRNA,integrase,transposase,protease attL 609149:609173|attR 658705:658729
DBSCAN-SWA_3 922245 : 929968 10 uncultured_Caudovirales_phage(50.0%) integrase attL 916232:916246|attR 928572:928586
DBSCAN-SWA_4 1183894 : 1228997 60 Enterobacteria_phage(55.77%) tRNA,integrase,portal,capsid,head,tail,terminase,lysis attL 1176529:1176544|attR 1236174:1236189
DBSCAN-SWA_5 2732834 : 2774295 51 Salmonella_phage(51.11%) terminase,integrase,tail,holin NA
DBSCAN-SWA_6 4077774 : 4089335 13 Enterobacteria_phage(88.89%) integrase attL 4077592:4077614|attR 4088225:4088247
DBSCAN-SWA_7 4838910 : 4911167 51 Escherichia_phage(26.67%) holin,transposase NA
DBSCAN-SWA_8 4995318 : 5036262 47 Enterobacteria_phage(48.84%) integrase,portal,terminase,tail,protease,holin,lysis attL 4995069:4995088|attR 5040214:5040233
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP024652
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 48415 47 Escherichia_phage(29.41%) integrase,transposase attL 3416:3430|attR 38145:38159
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage