CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP024719	Escherichia coli strain LS4 plasmid p2LS4, complete sequence	0 crisprs	NA	0	0
NZ_CP024717	Escherichia coli strain LS4 chromosome, complete genome	4 crisprs	cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	4	11
NZ_CP024718	Escherichia coli strain LS4 plasmid p1LS4, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024717_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024717_1

228945-229058

Orphan

Consensus_repeat	Method
TTTTTTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP024717_1

>merge|NZ_CP024717|1|228945-229058|PILER-CR
TTTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTTTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP024717|1|1|228945-229058|PILER-CR
TTTACCTGATTCGGGTAAACGCC	TTTACCTGATTTGGGTAAACTTTT
TTTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTT
CTTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024717.1\|WP_000224914.1\|221112_221283_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP024717.1\|WP_072147164.1\|221734_221836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024717.1\|WP_022645049.1\|223265_227531_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP024717.1\|WP_000100847.1\|232307_233093_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP024717.1\|WP_001097224.1\|219647_220337_-\|antiterminator-Q	unknown	unknown	gnl\|CDD\|368843
NZ_CP024717.1\|WP_021533932.1\|234123_234405_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP024717.1\|WP_001182900.1\|229494_230034_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP024717.1\|WP_000858975.1\|230438_231128_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP024717.1\|WP_001067458.1\|230103_230334_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP024717.1\|WP_001099488.1\|220470_220833_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_CP024717.1\|WP_000971096.1\|220333_220474_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP024717.1\|WP_000774479.1\|220829_221120_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP024717.1\|WP_000149537.1\|233766_233949_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP024717.1\|WP_000233576.1\|231723_231930_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP024717.1\|WP_000788794.1\|227780_228482_-\|replication-protein-P-of-bacteriophage	unknown	unknown	gnl\|CDD\|369163
NZ_CP024717.1\|WP_000186848.1\|233089_233770_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP024717.1\|WP_000700202.1\|222185_223229_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP024717.1\|WP_001053005.1\|221282_221738_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP024717.1\|WP_000995418.1\|232005_232302_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP024717.1\|WP_000548516.1\|233921_234113_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224

Protein	Function_ID	Function_description	E-value
NZ_CP024717.1\|WP_000224914.1\|221112_221283_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.03602e-26
NZ_CP024717.1\|WP_022645049.1\|223265_227531_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.77506e-127
NZ_CP024717.1\|WP_000100847.1\|232307_233093_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP024717.1\|WP_001097224.1\|219647_220337_-\|antiterminator-Q	gnl\|CDD\|368843	pfam06323, Phage_antiter_Q, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Phage 82 gene Q encodes a phage-specific positive regulator of late gene expression, thought, by analogy to the corresponding gene of phage lambda, to be a transcription antiterminator.	4.35962e-97
NZ_CP024717.1\|WP_001182900.1\|229494_230034_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	4.83697e-38
NZ_CP024717.1\|WP_000858975.1\|230438_231128_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.28713e-28
NZ_CP024717.1\|WP_001067458.1\|230103_230334_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.89251e-22
NZ_CP024717.1\|WP_001099488.1\|220470_220833_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	5.2666e-72
NZ_CP024717.1\|WP_000774479.1\|220829_221120_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	8.41611e-49
NZ_CP024717.1\|WP_000149537.1\|233766_233949_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	6.23812e-34
NZ_CP024717.1\|WP_000233576.1\|231723_231930_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
NZ_CP024717.1\|WP_000788794.1\|227780_228482_-\|replication-protein-P-of-bacteriophage	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.10349e-80
NZ_CP024717.1\|WP_000186848.1\|233089_233770_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	3.63434e-29
NZ_CP024717.1\|WP_000700202.1\|222185_223229_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.88698e-30
NZ_CP024717.1\|WP_001053005.1\|221282_221738_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.40549e-94
NZ_CP024717.1\|WP_000995418.1\|232005_232302_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	4.88161e-52
NZ_CP024717.1\|WP_000548516.1\|233921_234113_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	1.05312e-21

>NZ_CP024717.1|WP_000788794.1|227780_228482_-|replication-protein-P-of-bacteriophage
MKNIAAQMINFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVSDGMRVARRQNRPFLPSPGQFVAWCREEASVTAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELACMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGAMK
>NZ_CP024717.1|WP_022645049.1|223265_227531_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MTTVNKKLKKTASGAITWSVIVTQILSPVSLSLIPANSFASSGNKDVTQIYASDEHANKVASFAASAGQSLANNNASSFAVNTLSTQATKEVVDWLQQYGNARIKLNVDDSFSLKDSSFDFLYPWLDTQDYVLFSQTSLHRTDDRNQTNIGLGIRHFTPDNAMLGANVFYDYDLSRSHSRAGFGVEYWRDYFRLGVNTYFGLSDWKNSRDIDDYLERPANGWDFSAEGWLPAYPQLGASIQFEKYYGKNVGLFGSDNLQENPYAVTGGISYTPVPLIKFSAQHKQGQSNTHDTTFGVEFNYRPGVSLAEQLSSDNVAVMREVQNRRYDFVERNNNIVLEYKKKHALKISLPESVQGEGESIIPVTLTINNASGGIKSVQWNDSAFTAAGGKISGNGTSWQITLPAYKSEGVNSWNVGATVQDNRGNVSNYAVMNISVTDSGVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLTAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLNIKQAAITDSDVSTADSSFTLDGDSSPTISADSQSTYPIVLSLKDSNGKALTGLADDIEMSVEFTADSNSARQRETVTAPSLGAVEEISAGVYRSVLAAGSQAGTVRVTAKVQGKTFTLSIKQTATTEPDSEVSAVLTAAPAEQVVGYNINLQLAVKDSQGNAITGDNTLSFYALNQAEGVEFGTVTEKDGVYSATVTSKRAGKITIGVKSDSHDFSGVKKEITFIEDRQQVTFSQFEASQNNALADGKQRNMVTVSLADRFGNVVPGYAVTLSLPAGITQVGGEHAVSTDENGNAIFALISSTPGSYVITAHAGSQMSTELTVTFASNMTGASLSLTPESSSLISNIPANGKDAAVLDVQLTNTNASVNGQKIQLITSSEGLSVPTNIVTDSTGHVSVPLTTVKAGEYTVTARVTDGSHSVESGSVKLTFVPDVASAELNMSVSKQEIVADGSENATVNIQLVDANNNAFTGEVDLTITPSTGASLTSSNLQLDAHGQATTQFTASKSGQYTIQAEYVLDGKRITASQNIDAVTDVKGAVLEITSSASSAVVSDTNNLVFTLLLKSKSGEALSGRALNVKTSGPSKYGALVVDKTTVTTDENGQATVSVHGRTVGSYKLTATLNELGSDVSAVKSFSLYADDANGVLTLTKDPGYETNDGSPVGIYARFVDHFGNPLSGTVEFSAGSEDSPDSQRVKMEPATVTLHWTGNAASEFSTYESGYHWIKAKITNSKNTYEKTIRTYVVKLPEKDS
>NZ_CP024717.1|WP_000700202.1|222185_223229_+|alpha/beta-hydrolase
MKINKILSSATLLYGMSMAMSVGSCATPVQTNLPGYTPGADIISVSPTRNQVDLIGDVVYSQIKGTRSVRQLHMSVLVPRTNDLKPAIIYYPGGGFMSSEHDKFIEMRMALAEAGFVVAAVEYRTIPDTFPAPVEDGKAAIRYLREHASNYGIDPQRIGVLGDSAGGWLAQMMGTTNGDKTFDKGDFLQQSSDVQAVATLYGISDLLNIGEGFPESVQEVHRSPAVTEALMINGPAFRNFAGAPITASKEKALNASPIGHMKGVKPPFLIMHGSKDTLVSPEQSAKLFRMLKKNGDNAEYVLVEGAEHGDKTWYQPIIINRVVEWFTKNLGAPIKTAPQQQNPNANL
>NZ_CP024717.1|WP_072147164.1|221734_221836_-|hypothetical-protein
MRTHNPNSLLPSQMQKCTCVFLHLASDLCGGEA
>NZ_CP024717.1|WP_001053005.1|221282_221738_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFIAIGQQIQPYLENGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATAAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLDTGEMYVFLCKVEAWAVNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP024717.1|WP_000224914.1|221112_221283_-|hypothetical-protein
MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP024717.1|WP_000774479.1|220829_221120_-|DUF1364-domain-containing-protein
MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLAGLCGTGIKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
>NZ_CP024717.1|WP_001099488.1|220470_220833_-|RusA-family-crossover-junction-endodeoxyribonuclease
MNTYCITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKNAMLDIGLAIPVKISIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGKLELTITELGDE
>NZ_CP024717.1|WP_000971096.1|220333_220474_-|YlcG-family-protein
MMFESYMAERLRRRWVRLRLYRFPSSVLTDYRILKNYAKTLKGAAA
>NZ_CP024717.1|WP_001097224.1|219647_220337_-|antiterminator-Q
MNTQYLQYVREQLIVATADLSGATKGQLEAWLEHAQFDTGTYKRKKPRILDEVTGRMITLDNPPISGKQLYAKGSSIALVSQVEFSTSSWRRAVLSLEEHQKAWLLWSYSESVRWEHQVTITQWAWSEFKTLLGTRKIAGKTLERLKKLIWLAAQDVKNELAGRKTYEYQELASLVGVTSKNWSETFTERWVAMKHIFLQLDSQALLLLTKTRSKQKTIFSQQDIAKLD
>NZ_CP024717.1|WP_001182900.1|229494_230034_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAVDNQDVVATLIVNEYLEQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP024717.1|WP_001067458.1|230103_230334_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP024717.1|WP_000858975.1|230438_231128_+|helix-turn-helix-transcriptional-regulator
MKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP024717.1|WP_000233576.1|231723_231930_+|phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>NZ_CP024717.1|WP_000995418.1|232005_232302_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRCGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHHVDIDSEV
>NZ_CP024717.1|WP_000100847.1|232307_233093_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP024717.1|WP_000186848.1|233089_233770_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP024717.1|WP_000149537.1|233766_233949_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFHGLSVIRNPLKAQRLAEEINNKRGAVCTKHLLLS
>NZ_CP024717.1|WP_000548516.1|233921_234113_+|DUF1382-family-protein
MHKASPVELRTSIDLAHSLAQIGVRFVPIPAETDEEFHTLATSLSQKLEMMVAKAEADERDQV
>NZ_CP024717.1|WP_021533932.1|234123_234405_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGACSVTPQQENALRSIARQANSEIKKVRQQFPDKNVNDICRSVLKKHRETVTLKGFTPTHLSLAIGMLNGVFKER

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Crispr_ID: NZ_CP024717_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024717_2

456164-456255

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024717_2

>merge|NZ_CP024717|2|456164-456255|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP024717|2|1|456164-456255|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024717.1\|WP_000979522.1\|445414_445624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024717.1\|WP_000024569.1\|460256_460562_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP024717.1\|WP_001151437.1\|456678_457275_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP024717.1\|WP_001295947.1\|445678_449641_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP024717.1\|WP_001063148.1\|461412_463959_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP024717.1\|WP_001230247.1\|463958_465131_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP024717.1\|WP_001264949.1\|465925_466954_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP024717.1\|WP_001044302.1\|457560_458802_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP024717.1\|WP_000191701.1\|449680_450319_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP024717.1\|WP_000209903.1\|460816_461416_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP024717.1\|WP_001295946.1\|450606_451698_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP024717.1\|WP_001120112.1\|465260_465953_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP024717.1\|WP_001126780.1\|452401_452788_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP024717.1\|WP_001295943.1\|454721_456050_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP024717.1\|WP_000420625.1\|459336_460257_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP024717.1\|WP_001028098.1\|454206_454701_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP024717.1\|WP_001143120.1\|457295_457523_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP024717.1\|WP_012896765.1\|451697_452390_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP024717.1\|WP_001001161.1\|453605_454196_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP024717.1\|WP_001295944.1\|452795_453596_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851

Protein	Function_ID	Function_description	E-value
NZ_CP024717.1\|WP_000024569.1\|460256_460562_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP024717.1\|WP_001151437.1\|456678_457275_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP024717.1\|WP_001295947.1\|445678_449641_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP024717.1\|WP_001063148.1\|461412_463959_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP024717.1\|WP_001230247.1\|463958_465131_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP024717.1\|WP_001264949.1\|465925_466954_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP024717.1\|WP_001044302.1\|457560_458802_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP024717.1\|WP_000191701.1\|449680_450319_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP024717.1\|WP_000209903.1\|460816_461416_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP024717.1\|WP_001295946.1\|450606_451698_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP024717.1\|WP_001120112.1\|465260_465953_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP024717.1\|WP_001126780.1\|452401_452788_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP024717.1\|WP_001295943.1\|454721_456050_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP024717.1\|WP_000420625.1\|459336_460257_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP024717.1\|WP_001028098.1\|454206_454701_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP024717.1\|WP_001143120.1\|457295_457523_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP024717.1\|WP_012896765.1\|451697_452390_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP024717.1\|WP_001001161.1\|453605_454196_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP024717.1\|WP_001295944.1\|452795_453596_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139

>NZ_CP024717.1|WP_001295943.1|454721_456050_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP024717.1|WP_001028098.1|454206_454701_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP024717.1|WP_001001161.1|453605_454196_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP024717.1|WP_001295944.1|452795_453596_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP024717.1|WP_001126780.1|452401_452788_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP024717.1|WP_012896765.1|451697_452390_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP024717.1|WP_001295946.1|450606_451698_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP024717.1|WP_000191701.1|449680_450319_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP024717.1|WP_001295947.1|445678_449641_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP024717.1|WP_000979522.1|445414_445624_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP024717.1|WP_001151437.1|456678_457275_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP024717.1|WP_001143120.1|457295_457523_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP024717.1|WP_001044302.1|457560_458802_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP024717.1|WP_000420625.1|459336_460257_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP024717.1|WP_000024569.1|460256_460562_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP024717.1|WP_000209903.1|460816_461416_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP024717.1|WP_001063148.1|461412_463959_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP024717.1|WP_001230247.1|463958_465131_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP024717.1|WP_001120112.1|465260_465953_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP024717.1|WP_001264949.1|465925_466954_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP024717_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024717_3

691254-691336

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024717_3

>merge|NZ_CP024717|3|691254-691336|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP024717|3|2|691254-691336|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024717.1\|WP_001040187.1\|690644_690863_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP024717.1\|WP_000599803.1\|698956_700615_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP024717.1\|WP_000886683.1\|676251_677544_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP024717.1\|WP_000488716.1\|701039_701735_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP024717.1\|WP_000410785.1\|694497_694722_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP024717.1\|WP_000067797.1\|677634_678978_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP024717.1\|WP_001043561.1\|686125_687892_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP024717.1\|WP_000228473.1\|683999_684494_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP024717.1\|WP_001385255.1\|685037_686003_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP024717.1\|WP_000520781.1\|693854_694175_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP024717.1\|WP_000491137.1\|702149_703049_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP024717.1\|WP_001202204.1\|687892_689614_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP024717.1\|WP_000077041.1\|679758_683865_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP024717.1\|WP_001295343.1\|678988_679600_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP024717.1\|WP_000746478.1\|696737_697853_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP024717.1\|WP_000458841.1\|703192_704845_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP024717.1\|WP_000188152.1\|694794_696741_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP024717.1\|WP_000934041.1\|691547_693824_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP024717.1\|WP_001241674.1\|689655_690360_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP024717.1\|WP_001351020.1\|698003_698960_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537

Protein	Function_ID	Function_description	E-value
NZ_CP024717.1\|WP_001040187.1\|690644_690863_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP024717.1\|WP_000599803.1\|698956_700615_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP024717.1\|WP_000886683.1\|676251_677544_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP024717.1\|WP_000488716.1\|701039_701735_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP024717.1\|WP_000410785.1\|694497_694722_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP024717.1\|WP_000067797.1\|677634_678978_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP024717.1\|WP_001043561.1\|686125_687892_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP024717.1\|WP_000228473.1\|683999_684494_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP024717.1\|WP_001385255.1\|685037_686003_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP024717.1\|WP_000520781.1\|693854_694175_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP024717.1\|WP_000491137.1\|702149_703049_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
NZ_CP024717.1\|WP_001202204.1\|687892_689614_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP024717.1\|WP_000077041.1\|679758_683865_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP024717.1\|WP_001295343.1\|678988_679600_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP024717.1\|WP_000746478.1\|696737_697853_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP024717.1\|WP_000458841.1\|703192_704845_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP024717.1\|WP_000188152.1\|694794_696741_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP024717.1\|WP_000934041.1\|691547_693824_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP024717.1\|WP_001241674.1\|689655_690360_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP024717.1\|WP_001351020.1\|698003_698960_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131

>NZ_CP024717.1|WP_001040187.1|690644_690863_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP024717.1|WP_001241674.1|689655_690360_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP024717.1|WP_001202204.1|687892_689614_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP024717.1|WP_001043561.1|686125_687892_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP024717.1|WP_001385255.1|685037_686003_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP024717.1|WP_000228473.1|683999_684494_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP024717.1|WP_000077041.1|679758_683865_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP024717.1|WP_001295343.1|678988_679600_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP024717.1|WP_000067797.1|677634_678978_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP024717.1|WP_000886683.1|676251_677544_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP024717.1|WP_000934041.1|691547_693824_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP024717.1|WP_000520781.1|693854_694175_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP024717.1|WP_000410785.1|694497_694722_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP024717.1|WP_000188152.1|694794_696741_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP024717.1|WP_000746478.1|696737_697853_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP024717.1|WP_001351020.1|698003_698960_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP024717.1|WP_000599803.1|698956_700615_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP024717.1|WP_000488716.1|701039_701735_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP024717.1|WP_000491137.1|702149_703049_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP024717.1|WP_000458841.1|703192_704845_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP024717_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024717_4

4882345-4882468

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024717_4

>merge|NZ_CP024717|4|4882345-4882468|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP024717|4|3|4882345-4882468|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024717.1\|WP_000587585.1\|4879349_4880162_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP024717.1\|WP_001273524.1\|4875078_4877181_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP024717.1\|WP_000212681.1\|4881903_4882209_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP024717.1\|WP_001295403.1\|4871797_4873210_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP024717.1\|WP_000848170.1\|4880173_4881778_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP024717.1\|WP_001174939.1\|4884079_4885453_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP024717.1\|WP_000534260.1\|4882782_4884039_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP024717.1\|WP_000493947.1\|4885667_4886309_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP024717.1\|WP_000102278.1\|4891364_4891454_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP024717.1\|WP_001070015.1\|4878560_4879346_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP024717.1\|WP_000269498.1\|4889111_4890044_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP024717.1\|WP_001182336.1\|4887787_4888999_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP024717.1\|WP_000098896.1\|4886348_4887497_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP024717.1\|WP_000701057.1\|4891619_4892789_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP024717.1\|WP_001296101.1\|4877895_4878564_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP024717.1\|WP_000190985.1\|4890040_4891066_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP024717.1\|WP_001070248.1\|4874431_4875058_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP024717.1\|WP_000504336.1\|4877184_4877832_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP024717.1\|WP_000528342.1\|4873766_4873976_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP024717.1\|WP_000007273.1\|4892934_4893516_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534

Protein	Function_ID	Function_description	E-value
NZ_CP024717.1\|WP_000587585.1\|4879349_4880162_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172
NZ_CP024717.1\|WP_001273524.1\|4875078_4877181_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP024717.1\|WP_000212681.1\|4881903_4882209_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP024717.1\|WP_001295403.1\|4871797_4873210_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP024717.1\|WP_000848170.1\|4880173_4881778_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP024717.1\|WP_001174939.1\|4884079_4885453_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP024717.1\|WP_000534260.1\|4882782_4884039_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP024717.1\|WP_000493947.1\|4885667_4886309_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP024717.1\|WP_001070015.1\|4878560_4879346_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP024717.1\|WP_000269498.1\|4889111_4890044_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP024717.1\|WP_001182336.1\|4887787_4888999_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP024717.1\|WP_000098896.1\|4886348_4887497_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP024717.1\|WP_000701057.1\|4891619_4892789_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP024717.1\|WP_001296101.1\|4877895_4878564_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77
NZ_CP024717.1\|WP_000190985.1\|4890040_4891066_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP024717.1\|WP_001070248.1\|4874431_4875058_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP024717.1\|WP_000504336.1\|4877184_4877832_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	8.66973e-123
NZ_CP024717.1\|WP_000528342.1\|4873766_4873976_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP024717.1\|WP_000007273.1\|4892934_4893516_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137

>NZ_CP024717.1|WP_000212681.1|4881903_4882209_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP024717.1|WP_000848170.1|4880173_4881778_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP024717.1|WP_000587585.1|4879349_4880162_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP024717.1|WP_001070015.1|4878560_4879346_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP024717.1|WP_001296101.1|4877895_4878564_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP024717.1|WP_000504336.1|4877184_4877832_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP024717.1|WP_001273524.1|4875078_4877181_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP024717.1|WP_001070248.1|4874431_4875058_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP024717.1|WP_000528342.1|4873766_4873976_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP024717.1|WP_001295403.1|4871797_4873210_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP024717.1|WP_000534260.1|4882782_4884039_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP024717.1|WP_001174939.1|4884079_4885453_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP024717.1|WP_000493947.1|4885667_4886309_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP024717.1|WP_000098896.1|4886348_4887497_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP024717.1|WP_001182336.1|4887787_4888999_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP024717.1|WP_000269498.1|4889111_4890044_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP024717.1|WP_000190985.1|4890040_4891066_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP024717.1|WP_000102278.1|4891364_4891454_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP024717.1|WP_000701057.1|4891619_4892789_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP024717.1|WP_000007273.1|4892934_4893516_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024717_1	1.1\|228968\|24\|NZ_CP024717\|PILER-CR	228968-228991	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP024717_1	1.1\|228968\|24\|NZ_CP024717\|PILER-CR	228968-228991	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP024717_1	1.2\|229015\|25\|NZ_CP024717\|PILER-CR	229015-229039	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP024717_1	1.2\|229015\|25\|NZ_CP024717\|PILER-CR	229015-229039	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP024717_1	1.1\|228968\|24\|NZ_CP024717\|PILER-CR	228968-228991	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP024717_1	1.2\|229015\|25\|NZ_CP024717\|PILER-CR	229015-229039	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP024717_2	2.1\|456190\|40\|NZ_CP024717\|CRISPRCasFinder	456190-456229	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95
NZ_CP024717_4	4.1\|4882388\|38\|NZ_CP024717\|CRISPRCasFinder	4882388-4882425	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP024717_1	1.2\|229015\|25\|NZ_CP024717\|PILER-CR	229015-229039	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84

1. spacer 1.1|228968|24|NZ_CP024717|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

2. spacer 1.1|228968|24|NZ_CP024717|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 1.2|229015|25|NZ_CP024717|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

4. spacer 1.2|229015|25|NZ_CP024717|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 1.1|228968|24|NZ_CP024717|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

6. spacer 1.2|229015|25|NZ_CP024717|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

7. spacer 2.1|456190|40|NZ_CP024717|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

8. spacer 4.1|4882388|38|NZ_CP024717|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 1.2|229015|25|NZ_CP024717|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2969 : 55393

Stx2-converting_phage(27.45%)

terminase,portal,transposase,head,tail,holin,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001296031.1\|2969_3245_+	hypothetical protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_001348267.1\|3241_3799_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_000937495.1\|4210_4480_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|4536_5205_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|5403_5586_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_022645053.1\|5813_6599_+	hypothetical protein	Q858V4	Yersinia_virus	1.3e-109	77.8
WP_000972097.1\|6600_7134_+\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_001164137.1\|7164_7692_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_071550361.1\|7707_10614_-	hypothetical protein	A0A0F7LDR4	Escherichia_phage	1.1e-118	45.9
WP_001016257.1\|11075_11822_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|11836_13378_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_000514710.1\|14018_17492_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
WP_061089814.1\|17834_18467_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000194730.1\|18412_19156_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_001296027.1\|19166_19865_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000807937.1\|19864_20206_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_000212991.1\|20198_23441_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_001513217.1\|23488_23698_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|23793_24168_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|24182_24899_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|24965_25310_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|25306_25753_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|25749_26100_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|26109_26436_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_000267294.1\|26432_29018_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_001063099.1\|28963_29185_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173031.1\|29229_31167_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001296023.1\|31230_32892_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
WP_000958366.1\|32888_33452_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_000829185.1\|33742_34108_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|34149_34350_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736382.1\|34548_34764_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|34849_35035_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|35256_35343_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|35897_36431_-	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_000369850.1\|36536_36809_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|36774_37119_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|37123_37339_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_016230612.1\|37489_39343_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000871291.1\|39603_39939_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_023142244.1\|40219_40351_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000024331.1\|41152_42202_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_000917751.1\|42353_42551_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_001513213.1\|42777_43599_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000140014.1\|43595_43976_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001265085.1\|43976_45032_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_001329966.1\|45033_45306_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|45473_45686_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|45866_46532_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151161.1\|46706_47132_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000450998.1\|47147_47918_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_000788950.1\|47939_48686_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000095675.1\|48692_49655_-	DNA-binding protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000693845.1\|49677_50103_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000471549.1\|50099_50315_-	transcriptional regulator	NA	NA	NA	NA
WP_000103687.1\|50364_51081_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000379589.1\|51353_51509_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001171951.1\|51668_51887_+	hypothetical protein	NA	NA	NA	NA
WP_023142248.1\|51935_52103_-	hypothetical protein	NA	NA	NA	NA
WP_000449179.1\|52452_52641_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|52637_52829_+	DUF1482 family protein	NA	NA	NA	NA
WP_016230610.1\|52921_55393_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0

DBSCAN-SWA_2

194893 : 240602

Enterobacteria_phage(56.0%)

terminase,portal,tRNA,lysis,head,tail,integrase,holin,capsid

attL 213677:213691|attR 242271:242285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654172.1\|194893_195172_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4
WP_000290538.1\|195168_197190_-	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_001531667.1\|197248_200731_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023149564.1\|200791_201394_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_023146277.1\|201330_202074_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_001152626.1\|202078_202777_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_000847375.1\|202776_203106_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_000840216.1\|203102_205664_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000459457.1\|205656_206091_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479203.1\|206072_206495_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_001295979.1\|206510_207251_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000683150.1\|207258_207654_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_000985120.1\|207650_208229_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000753018.1\|208240_208594_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000158908.1\|208605_209004_-	DNA packaging protein from bacteriophage origin	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000063293.1\|209045_210071_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_001295978.1\|210126_210459_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123268.1\|210468_211788_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295977.1\|211768_213370_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000198149.1\|213366_213573_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027261.1\|213569_215495_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
213677:213691	attL	NA	NA	NA	NA
WP_000453620.1\|215469_216015_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_000881610.1\|216578_216761_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|216967_217294_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|217774_218068_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|218158_218341_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001180486.1\|218557_219034_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_000544528.1\|219020_219326_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097224.1\|219647_220337_-	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000971096.1\|220333_220474_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001099488.1\|220470_220833_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000774479.1\|220829_221120_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224914.1\|221112_221283_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053005.1\|221282_221738_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_072147164.1\|221734_221836_-	hypothetical protein	NA	NA	NA	NA
WP_000700202.1\|222185_223229_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_022645049.1\|223265_227531_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000788794.1\|227780_228482_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_001435464.1\|228478_229408_-	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_001182900.1\|229494_230034_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001067458.1\|230103_230334_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000858975.1\|230438_231128_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_000233576.1\|231723_231930_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995418.1\|232005_232302_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000100847.1\|232307_233093_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|233089_233770_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|233766_233949_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|233921_234113_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|234123_234405_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|234503_234725_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|234724_235051_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|235034_235274_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|235413_235650_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|235639_236782_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|236895_238146_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|238317_238971_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|238980_239442_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|239495_240602_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
242271:242285	attR	NA	NA	NA	NA

DBSCAN-SWA_3

532522 : 619808

104

Burkholderia_virus(25.35%)

terminase,plate,portal,tRNA,lysis,transposase,head,tail,integrase,holin,capsid

attL 550745:550761|attR 613275:613291

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295930.1\|532522_533308_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899600.1\|533443_534223_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436917.1\|534199_535093_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011610.1\|535246_535993_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350057.1\|535989_536172_-	protein YcaR	NA	NA	NA	NA
WP_000056492.1\|536223_537456_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570547.1\|537492_538479_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551259.1\|538475_540224_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705731.1\|540260_542525_-	ComEC family protein	NA	NA	NA	NA
WP_000167336.1\|542730_543015_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|543174_544848_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|544958_545642_-	(d)CMP kinase	NA	NA	NA	NA
WP_029364556.1\|545814_546597_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_001281701.1\|546740_547130_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
WP_001170114.1\|547101_547551_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_000206212.1\|547552_547759_-	hypothetical protein	NA	NA	NA	NA
WP_000631813.1\|547748_547979_-	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|547975_548659_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000763554.1\|548655_548871_-	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|548885_549182_-	hypothetical protein	NA	NA	NA	NA
WP_000632576.1\|549191_549464_-	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|549752_550283_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000843446.1\|550310_550580_-	hypothetical protein	NA	NA	NA	NA
WP_000960679.1\|550582_551749_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
550745:550761	attL	NA	NA	NA	NA
WP_000186588.1\|551759_553529_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.5e-227	69.4
WP_001095645.1\|553544_553862_-	hypothetical protein	NA	NA	NA	NA
WP_000533817.1\|553861_554782_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_000047759.1\|554792_555101_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000123378.1\|555153_555342_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000031013.1\|555435_555792_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000783854.1\|555908_556673_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_001069611.1\|556863_557079_-	hypothetical protein	NA	NA	NA	NA
WP_000972294.1\|557077_557482_+	hypothetical protein	NA	NA	NA	NA
WP_000194951.1\|557457_558186_-	hypothetical protein	NA	NA	NA	NA
WP_000793146.1\|558316_558667_+	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_001104440.1\|558669_559410_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000264665.1\|559393_560044_+	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_000175099.1\|560040_560367_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000227701.1\|560366_560678_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|560677_561223_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000167500.1\|561219_562815_+	hypothetical protein	A4JWJ4	Burkholderia_virus	6.5e-185	62.8
WP_000090684.1\|562814_564311_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000117548.1\|564291_565113_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000135514.1\|565115_565574_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_001273074.1\|565788_566904_+	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_001286908.1\|566918_567872_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_000537457.1\|567881_568220_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|568221_568668_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|568667_569132_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_012602372.1\|569128_569383_+	hypothetical protein	NA	NA	NA	NA
WP_000729834.1\|569372_570800_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000034294.1\|570799_571321_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
WP_000110114.1\|571323_571605_+	hypothetical protein	NA	NA	NA	NA
WP_000084213.1\|571702_572038_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001202894.1\|571961_572120_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000016538.1\|572195_575147_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_000458387.1\|575146_576031_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_012602373.1\|576027_576243_+	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000808007.1\|576230_577385_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000148266.1\|577381_577978_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000859111.1\|578032_578380_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001219098.1\|578370_579474_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000138756.1\|579466_580045_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_074162941.1\|580047_581328_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.7e-40	44.1
WP_000072165.1\|581334_581949_-\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_001486917.1\|581948_582431_-\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	7.5e-28	44.7
WP_064767240.1\|582471_582912_-\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.1e-41	55.6
WP_000904922.1\|582971_583544_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_000445240.1\|583799_585083_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057158.1\|585153_586242_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000642852.1\|586440_587133_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000194832.1\|587262_589023_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_001295917.1\|589428_590286_+	formate transporter FocA	NA	NA	NA	NA
WP_001292822.1\|590340_592623_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_000468308.1\|592942_593161_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001576679.1\|593242_594406_-	phage late control D family protein	Q7Y4C6	Escherichia_virus	5.9e-204	97.4
WP_000978911.1\|594405_594885_-\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	3.3e-84	98.7
WP_000785970.1\|597338_597458_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|597490_597766_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|597822_598341_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001576673.1\|598353_599544_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.1e-224	99.2
WP_001576672.1\|599855_600332_-	hypothetical protein	NA	NA	NA	NA
WP_001576671.1\|600772_601150_+	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|602203_602950_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|602964_604506_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001576667.1\|604765_607390_-\|tail	phage tail protein	Q858V4	Yersinia_virus	0.0e+00	95.7
WP_001576666.1\|607400_607931_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	2.3e-102	99.4
WP_001121498.1\|607923_608832_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.7e-161	99.7
WP_000127163.1\|608836_609184_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001576664.1\|609180_609816_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.2e-113	99.1
WP_001001786.1\|609882_610335_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
WP_000917151.1\|610327_610795_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	6.1e-83	100.0
WP_001576659.1\|610902_611328_-\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	1.5e-64	93.6
WP_001576658.1\|611315_611741_-	hypothetical protein	U5N096	Enterobacteria_phage	1.0e-57	96.5
WP_001576656.1\|611755_612253_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.4e-92	99.4
WP_000123124.1\|612252_612534_-\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_000846399.1\|612537_612741_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988633.1\|612740_613250_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_001576654.1\|613349_614093_-\|terminase	terminase endonuclease subunit	Q858W5	Yersinia_virus	1.6e-125	98.8
613275:613291	attR	NA	NA	NA	NA
WP_001576652.1\|614096_615170_-\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	2.2e-200	98.9
WP_001085955.1\|615228_616083_-\|capsid	GPO family capsid scaffolding protein	Q94MH0	Enterobacteria_phage	5.2e-133	98.2
WP_000156861.1\|616256_618029_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_001576650.1\|618028_619063_+\|portal	phage portal protein	M1SV64	Escherichia_phage	7.9e-200	98.8
WP_001576649.1\|619388_619808_-	hypothetical protein	Q6K1E9	Salmonella_virus	5.7e-56	76.3

DBSCAN-SWA_4

623124 : 683865

Enterobacteria_phage(71.19%)

head,plate,tRNA,tail,transposase,terminase,portal,integrase,holin,capsid

attL 636203:636222|attR 676210:676229

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001576643.1\|623124_625404_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.9
WP_001576641.1\|625393_625669_-	hypothetical protein	U5N3W1	Enterobacteria_phage	1.9e-44	98.9
WP_001576640.1\|625665_625890_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	1.5e-34	97.3
WP_001576638.1\|625889_626192_-	hypothetical protein	Q7Y4C1	Escherichia_virus	1.6e-44	96.0
WP_001576637.1\|626191_626416_-	DUF2732 family protein	S4TP68	Salmonella_phage	5.2e-32	98.6
WP_000217677.1\|626479_626980_-	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
WP_001576635.1\|627157_627514_-	hypothetical protein	A0A0F7LDH4	Escherichia_phage	2.0e-62	98.3
WP_000072552.1\|627618_627930_+	helix-turn-helix transcriptional regulator	Q1JS25	Enterobacteria_phage	4.3e-53	100.0
WP_000023390.1\|628023_629019_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	5.4e-190	100.0
WP_000067979.1\|629050_629848_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
WP_000109283.1\|629944_631093_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|631406_632033_+	hydrolase	NA	NA	NA	NA
WP_000534666.1\|632068_632932_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213098.1\|632933_633551_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850306.1\|633561_636006_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
636203:636222	attL	NA	NA	NA	NA
WP_000023737.1\|636305_637298_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.3e-103	56.2
WP_001368591.1\|637367_637709_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
WP_001204236.1\|637813_638335_+	transcriptional regulator	NA	NA	NA	NA
WP_000856387.1\|638339_638762_+	hypothetical protein	NA	NA	NA	NA
WP_001287828.1\|638768_638960_-	hypothetical protein	NA	NA	NA	NA
WP_000776267.1\|639097_639448_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.1e-56	93.1
WP_000159455.1\|639458_639737_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000514277.1\|639748_639991_+	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021715.1\|639987_640101_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	89.2
WP_000543036.1\|640194_640605_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|640628_640832_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153700.1\|640828_641095_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000104290.1\|641091_641391_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.4e-40	88.9
WP_000013455.1\|641713_641944_+	hypothetical protein	A0A0A7NV48	Enterobacteria_phage	9.1e-32	97.4
WP_000599382.1\|642016_642382_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.7e-61	97.5
WP_000123489.1\|642388_645211_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.4
WP_000686485.1\|645287_646247_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	4.2e-179	99.1
WP_000211282.1\|646251_646566_+	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	4.1e-19	52.3
WP_000193205.1\|646649_647492_-	hypothetical protein	NA	NA	NA	NA
WP_001068329.1\|647531_648029_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_001300563.1\|648236_649349_-\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
WP_000236495.1\|650102_650627_+	hypothetical protein	NA	NA	NA	NA
WP_000087814.1\|650641_651688_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000613780.1\|651687_653439_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_001262655.1\|653593_654430_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
WP_001055083.1\|654453_655506_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.4e-188	94.3
WP_000632309.1\|655551_656352_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.1
WP_000063100.1\|656453_656948_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000864901.1\|656947_657148_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_001342221.1\|657150_657474_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000072341.1\|657470_657863_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
WP_000780577.1\|657859_658255_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
WP_000202148.1\|658393_660271_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-299	80.2
WP_000921127.1\|660294_660762_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.5e-83	95.5
WP_000356366.1\|660754_661390_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.1e-114	99.5
WP_001271941.1\|661386_661968_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.3e-102	98.4
WP_000213444.1\|661964_662315_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.5e-59	99.1
WP_001111954.1\|662318_663215_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.3e-154	97.7
WP_000071703.1\|663207_663738_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.6e-92	98.2
WP_032140708.1\|663740_665963_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	3.8e-183	65.0
WP_001554335.1\|665964_666492_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	2.6e-90	93.7
WP_000972134.1\|666520_667054_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	4.2e-96	98.9
WP_032142265.1\|667056_667614_-	hypothetical protein	A0A0A7NPY7	Enterobacteria_phage	5.0e-84	88.5
WP_000905061.1\|667832_668432_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|668460_668949_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000853410.1\|668961_671769_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000333503.1\|671755_671911_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651577.1\|671919_672294_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_000290462.1\|672349_672862_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005447.1\|672861_674046_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000132830.1\|674203_675313_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000488106.1\|675353_675614_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|675805_675946_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000886683.1\|676251_677544_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
676210:676229	attR	NA	NA	NA	NA
WP_000067797.1\|677634_678978_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|678988_679600_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077041.1\|679758_683865_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7

DBSCAN-SWA_5

1642898 : 1736506

Enterobacteria_phage(39.34%)

protease,portal,tRNA,lysis,transposase,terminase,tail,integrase

attL 1693590:1693605|attR 1740117:1740132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001300563.1\|1642898_1644011_+\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
WP_001118464.1\|1644273_1645404_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	4.6e-28	34.6
WP_000516135.1\|1645492_1647409_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.9e-149	51.1
WP_000843689.1\|1647779_1648184_+	DUF2541 family protein	NA	NA	NA	NA
WP_001102393.1\|1648209_1648923_+	acidic protein MsyB	NA	NA	NA	NA
WP_000528533.1\|1649071_1649638_+	acetate uptake transporter	NA	NA	NA	NA
WP_001094685.1\|1649672_1650260_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_000130187.1\|1650374_1651328_-	transaldolase	A0A127KNC6	Cyanophage	1.7e-10	31.5
WP_001112568.1\|1651606_1653037_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000906193.1\|1653106_1653883_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_000738712.1\|1653922_1654219_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_000781072.1\|1654432_1655719_-	threonine synthase	NA	NA	NA	NA
WP_000241659.1\|1655719_1656652_-	homoserine kinase	NA	NA	NA	NA
WP_001264707.1\|1656653_1659116_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_001386572.1\|1659197_1659263_-	thr operon leader peptide	NA	NA	NA	NA
WP_001223200.1\|1659476_1660163_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001295754.1\|1660562_1660703_-	hypothetical protein	NA	NA	NA	NA
WP_001194358.1\|1660798_1661515_+	two-component system response regulator ArcA	NA	NA	NA	NA
WP_000920358.1\|1661574_1662927_-	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001219582.1\|1662984_1664409_-	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	3.2e-10	20.9
WP_001188689.1\|1664408_1665098_-	two-component system response regulator CreB	W8CYM9	Bacillus_phage	8.8e-30	35.3
WP_000875487.1\|1665110_1665584_-	protein CreA	NA	NA	NA	NA
WP_000371666.1\|1665794_1666664_+	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000942350.1\|1666660_1667308_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_001531361.1\|1667359_1667887_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA
WP_000068677.1\|1667965_1668292_-	trp operon repressor	NA	NA	NA	NA
WP_000409419.1\|1668381_1670319_-	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000046754.1\|1670525_1672193_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.0e-39	27.7
WP_000093834.1\|1672313_1673546_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	2.1e-82	42.6
WP_001295751.1\|1673566_1674949_-	DNA repair protein RadA	NA	NA	NA	NA
WP_001132966.1\|1674997_1675966_-	phosphoserine phosphatase	NA	NA	NA	NA
WP_000124608.1\|1676071_1676716_+	YtjB family periplasmic protein	NA	NA	NA	NA
WP_000105853.1\|1676743_1677760_+	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_001293116.1\|1677760_1679092_-	type II toxin-antitoxin system HipA family toxin YjjJ	NA	NA	NA	NA
WP_000224879.1\|1679258_1679978_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000816460.1\|1680034_1681258_-	phosphopentomutase	NA	NA	NA	NA
WP_000477800.1\|1681309_1682632_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.5e-78	39.5
WP_001295412.1\|1682709_1683489_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_001143221.1\|1683746_1685297_+	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001088370.1\|1685268_1686132_+	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_000563043.1\|1686366_1687146_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_001298490.1\|1687142_1688216_-	patatin family protein	NA	NA	NA	NA
WP_000490275.1\|1688337_1688499_-	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001531357.1\|1688625_1689231_-	molecular chaperone OsmY	NA	NA	NA	NA
WP_000202563.1\|1689623_1691210_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
WP_001217535.1\|1691429_1691678_+	DinI family protein	A5LH55	Enterobacteria_phage	3.5e-37	96.3
WP_000389073.1\|1692124_1693159_+	hypothetical protein	A4KWR9	Enterobacteria_phage	7.1e-76	41.8
WP_000954672.1\|1693257_1694016_+	hypothetical protein	NA	NA	NA	NA
1693590:1693605	attL	NA	NA	NA	NA
WP_001555785.1\|1694319_1694613_-	hypothetical protein	NA	NA	NA	NA
WP_001555784.1\|1694655_1695696_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	2.4e-124	67.6
WP_000654148.1\|1695705_1695987_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.4e-18	51.1
WP_021548541.1\|1695986_1698359_-\|tail	phage tail fiber protein	A0A1X7QGG5	Escherichia_phage	1.8e-170	70.4
WP_021548540.1\|1698419_1701833_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.6
WP_011478365.1\|1701893_1702541_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.0e-109	94.4
WP_032142951.1\|1702438_1703182_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	97.6
WP_001152386.1\|1703186_1703885_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.0e-134	99.6
WP_000447253.1\|1703894_1704224_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_000372035.1\|1704223_1707280_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	0.0e+00	99.5
WP_001161009.1\|1707251_1707581_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001298500.1\|1707589_1707976_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
WP_000211119.1\|1708036_1708780_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.4e-129	97.2
WP_001079398.1\|1708790_1709192_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000677123.1\|1709188_1709779_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.6e-80	80.1
WP_001283153.1\|1709790_1710066_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097050.1\|1710058_1710382_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001360054.1\|1710468_1712496_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.7
WP_011478361.1\|1712440_1714021_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	4.3e-290	100.0
WP_001072975.1\|1713948_1714161_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000934133.1\|1714157_1716260_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.1
WP_000349501.1\|1716259_1716751_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	6.6e-72	86.6
WP_001139675.1\|1717426_1717579_-	hypothetical protein	A0A291AWZ2	Escherichia_phage	1.2e-21	100.0
WP_001341210.1\|1717566_1718034_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	7.7e-78	100.0
WP_001135250.1\|1718030_1718528_-	lysozyme	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_000839596.1\|1718527_1718743_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000799705.1\|1718810_1719863_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	6.1e-208	99.4
WP_000917723.1\|1720013_1720217_-	hypothetical protein	A0A291AWX6	Escherichia_phage	1.8e-31	98.5
WP_001033965.1\|1720487_1720934_+	hypothetical protein	NA	NA	NA	NA
WP_001577385.1\|1721018_1721384_-	antitermination protein Q	Q777W5	Enterobacteria_phage	7.9e-54	81.8
WP_001577384.1\|1721401_1722391_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.3e-195	99.7
WP_001061386.1\|1722398_1723196_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	8.3e-149	98.5
WP_000767115.1\|1723215_1723605_-	RusA family crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	3.5e-68	99.2
WP_000210170.1\|1723601_1723928_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_000066917.1\|1723924_1724578_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_011478357.1\|1724577_1725072_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	2.6e-84	96.3
WP_000061519.1\|1725068_1725887_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	4.7e-123	99.6
WP_000620696.1\|1725883_1726108_-	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
WP_099996242.1\|1726104_1727256_-	peptidase	A0A0P0ZE80	Stx2-converting_phage	4.8e-214	99.0
WP_000526665.1\|1727252_1727804_-	hypothetical protein	Q8SBF4	Shigella_phage	1.7e-100	99.5
WP_001191669.1\|1727796_1728057_-	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_001311077.1\|1728154_1728847_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	2.9e-121	96.5
WP_000135682.1\|1729569_1729932_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000081290.1\|1729997_1730822_+	DUF2303 family protein	U5P439	Shigella_phage	1.0e-149	99.6
WP_000008232.1\|1730949_1731486_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	7.4e-101	100.0
WP_001242727.1\|1731476_1731839_+	hypothetical protein	U5P092	Shigella_phage	1.7e-64	95.8
WP_000206713.1\|1731838_1732195_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	7.7e-38	74.1
WP_001229296.1\|1732196_1732562_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	5.1e-69	100.0
WP_000628710.1\|1732558_1733353_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	2.7e-59	49.8
WP_000653746.1\|1733920_1734916_+	hypothetical protein	NA	NA	NA	NA
WP_001218287.1\|1735291_1736506_-\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	1.6e-236	99.3
1740117:1740132	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3364143 : 3417143

Stx2-converting_phage(25.0%)

protease,integrase,transposase

attL 3415129:3415143|attR 3423721:3423735

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000997995.1\|3364143_3365682_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
WP_000624646.1\|3366809_3367160_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
WP_000435655.1\|3367156_3367582_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.6e-34	74.2
WP_085949591.1\|3367953_3368091_-	hypothetical protein	NA	NA	NA	NA
WP_001149834.1\|3368242_3369160_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000629094.1\|3369193_3370069_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000376547.1\|3370117_3371590_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
WP_000948500.1\|3371593_3372424_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001296386.1\|3372469_3373180_+	N-acetylneuraminic acid channel protein	NA	NA	NA	NA
WP_000865295.1\|3373192_3374302_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001030790.1\|3374363_3375287_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001282578.1\|3375322_3376057_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000274668.1\|3376156_3377143_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
WP_096928816.1\|3377294_3378522_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|3379022_3381113_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001305021.1\|3381944_3382217_+	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|3382507_3382867_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|3382870_3383086_+	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|3387866_3389018_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_001034083.1\|3389614_3393502_-\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
WP_000973516.1\|3394445_3396647_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000750130.1\|3396728_3398006_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015715.1\|3398002_3399745_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_001287500.1\|3399744_3400692_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001296374.1\|3400692_3402417_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074472.1\|3402552_3403746_+	MFS transporter	NA	NA	NA	NA
WP_001296373.1\|3404463_3404892_-	DUF417 family protein	NA	NA	NA	NA
WP_000109147.1\|3404931_3405492_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001110186.1\|3405533_3405794_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001513409.1\|3407627_3407741_+	hypothetical protein	NA	NA	NA	NA
WP_099156432.1\|3407831_3408957_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.5e-146	96.6
WP_023146305.1\|3408926_3409142_-	hypothetical protein	A0A0N7C1Y0	Escherichia_phage	1.7e-27	85.2
WP_000006213.1\|3409608_3409842_-	Major pilus subunit operon regulatory protein	NA	NA	NA	NA
WP_001774069.1\|3412333_3412885_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000147017.1\|3414578_3415622_-	hypothetical protein	NA	NA	NA	NA
3415129:3415143	attL	NA	NA	NA	NA
WP_001218869.1\|3415877_3417143_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_001218869.1\|3415877_3417143_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
3423721:3423735	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3739465 : 3819090

Salmonella_phage(66.67%)

head,plate,tRNA,lysis,tail,terminase,portal,integrase,capsid

attL 3774968:3775017|attR 3807815:3807864

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000047157.1\|3739465_3742096_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	9.3e-80	38.4
WP_000906486.1\|3742330_3742516_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000273309.1\|3743704_3744271_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_001287462.1\|3744267_3744696_+	DedA family protein	NA	NA	NA	NA
WP_000611804.1\|3744768_3746325_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001130208.1\|3746474_3746990_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_000638136.1\|3747040_3748153_-	AAA family ATPase	NA	NA	NA	NA
WP_001097132.1\|3748149_3748857_-	RNA ligase family protein	NA	NA	NA	NA
WP_001296316.1\|3749114_3750653_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001295175.1\|3750669_3751842_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_000378443.1\|3751968_3752499_-	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_000119749.1\|3752589_3752925_-	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000445658.1\|3752914_3753652_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_000165701.1\|3753775_3754960_-	MFS transporter	NA	NA	NA	NA
WP_001216534.1\|3755151_3756144_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000774966.1\|3756200_3757265_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_000985509.1\|3757257_3758460_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000777934.1\|3758815_3759775_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.4e-134	72.4
WP_000246582.1\|3759784_3761929_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.9e-196	48.5
WP_000080947.1\|3761901_3762312_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.6e-18	44.4
WP_001223227.1\|3762308_3762554_-	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
WP_001295174.1\|3762800_3763130_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000281320.1\|3763281_3763626_+	YgaC family protein	NA	NA	NA	NA
WP_000492656.1\|3763662_3764112_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000115381.1\|3764779_3765184_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_001229463.1\|3765230_3765755_-	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000137288.1\|3765764_3766064_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000508177.1\|3766246_3766405_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000522415.1\|3766488_3766938_+	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.0e-06	39.5
WP_000156817.1\|3766938_3767601_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_001296312.1\|3767621_3769022_-	GABA permease	NA	NA	NA	NA
WP_000625041.1\|3769258_3770539_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	3.8e-34	30.3
WP_000772888.1\|3770552_3772001_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000271888.1\|3772026_3773292_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_000993107.1\|3773311_3774289_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
3774968:3775017	attL	NA	NA	NA	NA
WP_001547641.1\|3775134_3776160_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.4e-193	95.3
WP_023352525.1\|3776161_3776794_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.9e-106	90.5
WP_000063849.1\|3776913_3777162_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	3.4e-24	71.6
WP_023135813.1\|3777194_3777704_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	7.8e-84	95.9
WP_000956182.1\|3777711_3777912_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_000963473.1\|3777875_3778217_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_001244228.1\|3778284_3778518_+	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_000752619.1\|3778517_3778745_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_029364117.1\|3778741_3779599_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.2e-161	97.9
WP_099996227.1\|3779595_3782010_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.9
WP_001154431.1\|3782162_3782351_+	hypothetical protein	E5G6M0	Salmonella_phage	1.6e-26	96.8
WP_001555842.1\|3782361_3782595_+	DinI family protein	E5G6M1	Salmonella_phage	4.0e-35	98.7
WP_001399243.1\|3782897_3784331_+	TIR domain-containing protein	NA	NA	NA	NA
WP_073980331.1\|3784365_3785406_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.5e-174	87.8
WP_001717244.1\|3785402_3786128_-\|terminase	terminase-like family protein	A4JWU9	Burkholderia_virus	3.2e-22	32.6
WP_073980332.1\|3786127_3787894_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.1
WP_000216237.1\|3788036_3788870_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.8e-123	91.0
WP_000742511.1\|3788886_3789945_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_000059191.1\|3789948_3790599_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000673523.1\|3790694_3791159_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_000868175.1\|3791158_3791362_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|3791365_3791581_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001341072.1\|3791600_3792074_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
WP_077896521.1\|3792075_3792453_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.6e-15	37.6
WP_073980334.1\|3792449_3792878_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.4e-46	75.2
WP_001039944.1\|3792973_3793405_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	4.4e-72	93.7
WP_000829122.1\|3793397_3793844_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.1e-63	85.6
WP_000993775.1\|3793912_3794491_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	4.2e-94	87.0
WP_000177590.1\|3794487_3794847_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	9.5e-52	86.6
WP_000268280.1\|3794833_3795742_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.8e-143	90.4
WP_001086824.1\|3795734_3796340_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.8e-111	93.0
WP_099997881.1\|3796336_3797737_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.7e-152	78.1
WP_021546685.1\|3797763_3798204_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	4.7e-53	69.7
WP_047649528.1\|3798175_3798778_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	4.3e-97	88.4
WP_047649542.1\|3798777_3799281_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	8.1e-41	54.9
WP_001463281.1\|3799353_3799920_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
WP_000046146.1\|3800062_3801235_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
WP_001207660.1\|3801244_3801760_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_001281016.1\|3801814_3802117_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	8.2e-41	90.0
WP_000763311.1\|3802131_3802251_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_099996229.1\|3802243_3805321_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.2
WP_000980413.1\|3805317_3805803_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_001011796.1\|3805799_3806900_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.4e-177	88.5
WP_000980501.1\|3806968_3807187_+	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-28	77.8
WP_048231062.1\|3807213_3807696_-	hypothetical protein	Q19UP0	Mannheimia_phage	6.0e-17	33.7
WP_000162574.1\|3808396_3808879_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
3807815:3807864	attR	NA	NA	NA	NA
WP_000600193.1\|3809010_3809487_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001117834.1\|3809476_3809767_+	RnfH family protein	NA	NA	NA	NA
WP_001203437.1\|3809828_3810170_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880939.1\|3810318_3811980_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059176.1\|3812065_3812944_-	NAD(+) kinase	NA	NA	NA	NA
WP_001296310.1\|3813066_3813660_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010723175.1\|3813713_3815000_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001314062.1\|3815020_3815812_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460035.1\|3815978_3817340_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256450.1\|3817476_3817725_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043335.1\|3817743_3818292_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000264790.1\|3818322_3819090_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_8

4315773 : 4325218

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|4315773_4316700_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8
WP_000783109.1\|4316704_4317436_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|4317416_4317524_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|4317583_4318315_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|4318536_4320222_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|4320218_4320938_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|4320984_4321455_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|4321495_4321957_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|4322081_4324085_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001292786.1\|4324081_4325218_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7

DBSCAN-SWA_9

4419394 : 4425697

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116066.1\|4419394_4420789_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0
WP_000183040.1\|4420963_4421857_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_000699407.1\|4422229_4423315_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_001023641.1\|4423314_4424214_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000857525.1\|4424271_4425150_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001100793.1\|4425154_4425697_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_10

4456500 : 4462952

Pseudomonas_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000086752.1\|4456500_4457145_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_000692345.1\|4457163_4457385_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186200.1\|4457447_4457924_-	RadC family protein	NA	NA	NA	NA
WP_001542276.1\|4457939_4458413_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001164966.1\|4458506_4458752_-	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|4458751_4459570_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_000846703.1\|4459790_4460201_-	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|4460649_4461396_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|4461410_4462952_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4

DBSCAN-SWA_11

4604552 : 4692798

103

Escherichia_phage(22.73%)

plate,tRNA,tail,transposase,terminase,portal,integrase,holin,capsid

attL 4604367:4604426|attR 4646979:4647103

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4604367:4604426	attL	NA	NA	NA	NA
WP_001531780.1\|4604552_4605569_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|4605537_4605801_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|4606010_4606193_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|4606192_4606762_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000151806.1\|4606758_4608975_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|4609005_4609326_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|4610336_4610750_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|4610848_4611079_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|4611137_4611614_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|4611653_4611878_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|4611874_4612630_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000609322.1\|4612619_4614035_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|4614073_4614484_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|4614485_4614722_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|4614718_4615030_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|4615026_4615251_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|4615932_4616721_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|4616895_4617819_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000536231.1\|4619007_4619706_+	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001138663.1\|4620168_4620774_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|4620783_4621272_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_000536919.1\|4621670_4621904_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|4622147_4622789_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|4622940_4623120_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|4623197_4623794_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|4623790_4624084_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|4624083_4624755_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|4624867_4625251_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|4625250_4625523_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|4625522_4626002_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|4626009_4626204_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|4626263_4626509_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|4626877_4627444_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|4627430_4629293_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|4629292_4629526_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|4629522_4631097_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|4631096_4632404_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|4632403_4632733_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|4632791_4633826_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000105179.1\|4633860_4634280_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|4634276_4634657_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|4634688_4635369_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|4635365_4635902_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|4635882_4636785_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|4636787_4637129_+\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|4637125_4638046_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|4638048_4638675_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000829621.1\|4638667_4639852_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|4639851_4640241_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|4640237_4641740_+\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|4641757_4642270_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000444667.1\|4642282_4642564_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|4642672_4644313_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|4644348_4644738_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|4644899_4645124_+	hypothetical protein	NA	NA	NA	NA
WP_001296152.1\|4646338_4646758_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847882.1\|4647229_4647895_+	UPF0149 family protein YecA	NA	NA	NA	NA
4646979:4647103	attR	NA	NA	NA	NA
WP_000797555.1\|4647945_4649157_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|4649347_4649587_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|4649624_4650122_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|4650293_4650617_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|4650880_4650967_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|4651081_4651333_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|4651410_4651914_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|4652708_4653698_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001187827.1\|4653767_4655282_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000100203.1\|4655296_4656283_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001296149.1\|4656449_4657250_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|4657224_4658649_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|4658655_4659084_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|4659863_4660214_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|4660216_4660795_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|4660921_4661809_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|4661805_4662732_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_001531763.1\|4662736_4664701_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|4664721_4665225_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|4665369_4667031_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|4667321_4668182_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_059329493.1\|4668184_4669234_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	4.6e-06	32.8
WP_000763867.1\|4669248_4669638_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983600.1\|4669648_4670293_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|4670481_4671630_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|4671622_4673701_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|4673700_4674093_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|4674145_4675879_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|4676094_4676661_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|4676674_4677421_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|4677808_4678909_+	cytochrome c	NA	NA	NA	NA
WP_000176764.1\|4678933_4681363_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA
WP_000564759.1\|4681398_4682370_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|4682366_4683110_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|4683150_4683546_-	hypothetical protein	NA	NA	NA	NA
WP_000639277.1\|4683598_4684417_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|4684413_4684980_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|4685289_4687062_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_077249130.1\|4687054_4687507_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907234.1\|4687535_4688276_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|4688310_4688832_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_001024911.1\|4688833_4689436_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_072093883.1\|4689506_4689572_+	hypothetical protein	NA	NA	NA	NA
WP_000580323.1\|4689710_4690322_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568520.1\|4690330_4691341_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_099156422.1\|4691450_4692798_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024718

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

287 : 69028

Macacine_betaherpesvirus(19.23%)

integrase,transposase

attL 51101:51116|attR 74161:74176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000086185.1\|287_971_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
WP_001309734.1\|1530_1965_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-19	60.3
WP_000624688.1\|1961_2312_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.2e-40	63.8
WP_000080172.1\|2342_3956_+\|transposase	IS66-like element ISEc43 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.3e-172	61.4
WP_099996264.1\|3982_4807_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000817036.1\|5673_6645_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_000772446.1\|6644_7811_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000852146.1\|8398_9154_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
WP_000016982.1\|9927_10734_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_001159868.1\|10734_11040_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813634.1\|11041_11260_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000151784.1\|11805_12318_+	hypothetical protein	NA	NA	NA	NA
WP_000545986.1\|12351_13485_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_000905949.1\|13651_14425_-	hypothetical protein	NA	NA	NA	NA
WP_000528932.1\|14437_14938_-	hypothetical protein	NA	NA	NA	NA
WP_001261278.1\|15202_15433_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000361611.1\|18140_19118_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_001066953.1\|19402_20143_-	site-specific recombinase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_023141670.1\|20263_20389_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|21588_22758_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|22953_23247_-	hypothetical protein	NA	NA	NA	NA
WP_000421272.1\|23352_23628_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001387467.1\|23627_23912_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000562172.1\|24516_25269_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_001022265.1\|25314_26280_-	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_000710783.1\|26312_26693_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_001077068.1\|26717_27608_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_001403365.1\|28591_29458_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_001271561.1\|29447_30335_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_000922702.1\|30345_31170_+	phosphodiesterase	NA	NA	NA	NA
WP_000950177.1\|31175_32249_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	33.7
WP_000476108.1\|32241_33552_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001067834.1\|35471_36176_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000874189.1\|36885_37371_-	hypothetical protein	NA	NA	NA	NA
WP_001267177.1\|37395_37881_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000117262.1\|37867_38563_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
WP_000729220.1\|38567_39698_-	ABC transporter permease	NA	NA	NA	NA
WP_000964653.1\|39687_40971_-	ABC transporter permease	NA	NA	NA	NA
WP_000119836.1\|40973_42353_-	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000178050.1\|42456_42984_-	iron transporter	NA	NA	NA	NA
WP_000118029.1\|43024_44911_-	FTR1 family iron permease	NA	NA	NA	NA
WP_012372823.1\|45257_46073_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_001067855.1\|46298_47003_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
51101:51116	attL	NA	NA	NA	NA
WP_000205725.1\|51691_52438_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	2.4e-09	30.8
WP_000704528.1\|52496_53357_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	6.7e-11	23.8
WP_000139321.1\|53459_54020_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001309245.1\|54148_54361_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001233838.1\|54605_55067_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.2e-20	37.1
WP_001298565.1\|55112_55322_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_000766805.1\|55359_55950_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000083819.1\|56189_56450_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|56674_56749_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130647.1\|56741_57599_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000027057.1\|58624_59485_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|59667_60225_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001067855.1\|60651_61356_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000978817.1\|62820_63282_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	3.6e-19	37.1
WP_001067855.1\|63475_64180_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001553864.1\|64070_64400_-	recombinase family protein	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_000454193.1\|64525_64876_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|65078_66092_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001389366.1\|66249_66723_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|66853_67642_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|67847_68195_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|68188_69028_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
74161:74176	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024717

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024718

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection