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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022550 Aeromonas salmonicida strain A527 chromosome, complete genome 11 crisprs csa3,DEDDh,WYL,DinG,cas3 0 2 9 0

Results visualization

1. NZ_CP022550
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_1 1339-1425 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_2 834570-834682 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_3 1223899-1224005 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_4 1694131-1694226 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_5 1777622-1777745 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_6 2794772-2794900 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_7 2991732-2991839 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_8 2994654-2994754 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_9 3250871-3251190 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_10 3630928-3631043 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022550_11 3686734-3686911 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022550_9 9.3|3251008|34|NZ_CP022550|CRISPRCasFinder 3251008-3251041 34 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 1223113-1223146 9 0.735
NZ_CP022550_9 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder 3251134-3251167 34 NZ_CP031599 Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence 201106-201139 9 0.735
NZ_CP022550_9 9.3|3251008|34|NZ_CP022550|CRISPRCasFinder 3251008-3251041 34 MN204498 Streptomyces phage Saftant, complete genome 9605-9638 10 0.706
NZ_CP022550_9 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder 3251134-3251167 34 NC_019125 Salmonella enterica subsp. salamae plasmid pSGSC3045-121, complete sequence 49111-49144 10 0.706
NZ_CP022550_9 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder 3251134-3251167 34 NZ_CP050104 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence 126471-126504 11 0.676
NZ_CP022550_9 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder 3251134-3251167 34 NZ_CP050109 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence 126471-126504 11 0.676

1. spacer 9.3|3251008|34|NZ_CP022550|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gatggcctgcaccttgccgttgcccttcttggtg	CRISPR spacer
gatgccctccaccttgccgttgccgacaatggcc	Protospacer
**** *** ***************  .  ***. 

2. spacer 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 9, identity: 0.735

tccggcggtcagctggccggcacccagcttggtc	CRISPR spacer
tccggcggtcagctggcccgcaacccaagggcgc	Protospacer
****************** *** ** .   *  *

3. spacer 9.3|3251008|34|NZ_CP022550|CRISPRCasFinder matches to MN204498 (Streptomyces phage Saftant, complete genome) position: , mismatch: 10, identity: 0.706

gatggcctgcaccttgccgttgcccttcttggtg	CRISPR spacer
tcagaggtgcaccttgcccttgcgcttcttgggc	Protospacer
   *.  *********** **** ********  

4. spacer 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder matches to NC_019125 (Salmonella enterica subsp. salamae plasmid pSGSC3045-121, complete sequence) position: , mismatch: 10, identity: 0.706

tccggcggtcagctggccggcacccagcttggtc	CRISPR spacer
tccggcggtctgctgaccggcaccggactgcccg	Protospacer
********** ****.******** ..**   . 

5. spacer 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 11, identity: 0.676

tccggcggtcagctggccggcacccagcttggtc	CRISPR spacer
aagctcggtcagcgggccggcacgcagctccttg	Protospacer
     ******** ********* *****.  * 

6. spacer 9.5|3251134|34|NZ_CP022550|CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 11, identity: 0.676

tccggcggtcagctggccggcacccagcttggtc	CRISPR spacer
aagctcggtcagcgggccggcacgcagctccttg	Protospacer
     ******** ********* *****.  * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 994010 : 1002666 9 Escherichia_phage(66.67%) integrase attL 990532:990546|attR 1005985:1005999
DBSCAN-SWA_2 1711624 : 1776990 59 Stx2-converting_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_3 2012618 : 2054233 39 uncultured_Caudovirales_phage(16.67%) integrase,transposase attL 2045746:2045777|attR 2063204:2063235
DBSCAN-SWA_4 2800458 : 2899741 82 Vibrio_phage(12.5%) integrase,protease,transposase,tRNA attL 2843395:2843454|attR 2899690:2901221
DBSCAN-SWA_5 2921646 : 2986493 57 uncultured_Caudovirales_phage(15.38%) protease,portal,integrase,transposase,head,terminase,capsid,tail,tRNA attL 2969934:2969949|attR 2989067:2989082
DBSCAN-SWA_6 3126121 : 3184063 46 Acinetobacter_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_7 3228076 : 3264972 21 Bacillus_phage(60.0%) transposase NA
DBSCAN-SWA_8 3861409 : 3932601 58 uncultured_Caudovirales_phage(14.29%) integrase,transposase,tRNA attL 3914465:3914515|attR 3922805:3922855
DBSCAN-SWA_9 4049699 : 4057913 6 Klosneuvirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage