CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017307	Xanthomonas campestris pv. campestris str. CN17 chromosome, complete genome	3 crisprs	WYL,cas3,DinG,csa3,DEDDh	3	15	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017307_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017307_1

623337-624367

Orphan

Consensus_repeat	Method
CTCACTGCCGGCTATGGCAGCAC	CRISPRCasFinder

21 spacers

The CRISPR arrays of NZ_CP017307_1

>merge|NZ_CP017307|1|623337-624367|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCACGCTCACTGGCGCCGATCAGAGTCAGCTGATCGCAGGCTATGGAAGTACCGAGACCGCGGGGAACGGCAGCGAGTTGATCGCCGGCTACGGCAGCACCGGCGTGGCCGGATCCGACAGCACCATCGTTGCCGGCTATGGCAGCTCTCAAACGGCCGGAGGCGGAAGCACGCTGACTGCCGGGTATGGCAGCACACAGACCGCCCGCAATGGCAGCGAGCTGACGGCCGGTTACGGCAGTACGGAAACCGCCGGTGCAGACAGCTCGCTGATCGCAGGCTACGGCAGCACGCAAACCTCCGGCGGCGACAGCTCGTTGACTGCCGGCTATGGCAGTACCCAAACCGCGCAGAACGGCAGCGACCTCACCGCCGGCTACGGCAGCACCAGCACGGCGGGCACCGATAGCTCGCTGATCGCCGGCTACGGCAGCACCCAGACCTCGGGCGGAGAGAGCTCGCTCACTGCCGGCTATGGCAGCACGCAGACGGCGCAGGACGGCAGCGACCTCACCGCCGGCTATGGCAGCACAGGCACCGCAGGTGCAGATAGCTCCCTGATTGCTGGTTATGGCAGTACGCAGACATCCGGCAACGACAGCTCGCTGACGGCGGGCTACGGCAGCACCCAAACCGCCCGTACCGGCAGCGACCTCACTGCGGGTTACGGCAGCACATCCACCGCTGGTGCGGACAGCACGCTGATCGCCGGTTATGGCAGCACCCAGACTTCCGGCGGGGACAGTTCGCTCACCGCCGGCTACGGCAGCACCCAAACCGCGCGCAAGGGTAGCGACCTCACGACGGGGTACGGCAGCACCTCGACCGCCGGCGCGGACAGCACCTTGATCGCCGGCTACGGCAGCACGCAGACCTCGGGTAGCGAGAGTTCGCTCACGGCTGGCTATGGCAGTACGCAGACCGCACGCAAGGGCAGTGACCTCACCGCCGGCTACGGCAGCACCTCGACCGCCGGTGCGGACAGCACCTTGATCGCCGGCTACGGCAGCAC

>NZ_CP017307|1|1|623337-624367|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCAC	GCTCACTGGCGCCGATCAGAGTCAG
CTGATCGCAGGCTATGGAAGTAC	CGAGACCGCGGGGAACGGCAGCGAG
TTGATCGCCGGCTACGGCAGCAC	CGGCGTGGCCGGATCCGACAGCACC
ATCGTTGCCGGCTATGGCAGCTC	TCAAACGGCCGGAGGCGGAAGCACG
CTGACTGCCGGGTATGGCAGCAC	ACAGACCGCCCGCAATGGCAGCGAG
CTGACGGCCGGTTACGGCAGTAC	GGAAACCGCCGGTGCAGACAGCTCG
CTGATCGCAGGCTACGGCAGCAC	GCAAACCTCCGGCGGCGACAGCTCG
TTGACTGCCGGCTATGGCAGTAC	CCAAACCGCGCAGAACGGCAGCGAC
CTCACCGCCGGCTACGGCAGCAC	CAGCACGGCGGGCACCGATAGCTCG
CTGATCGCCGGCTACGGCAGCAC	CCAGACCTCGGGCGGAGAGAGCTCG
CTCACTGCCGGCTATGGCAGCAC	GCAGACGGCGCAGGACGGCAGCGAC
CTCACCGCCGGCTATGGCAGCAC	AGGCACCGCAGGTGCAGATAGCTCC
CTGATTGCTGGTTATGGCAGTAC	GCAGACATCCGGCAACGACAGCTCG
CTGACGGCGGGCTACGGCAGCAC	CCAAACCGCCCGTACCGGCAGCGAC
CTCACTGCGGGTTACGGCAGCAC	ATCCACCGCTGGTGCGGACAGCACG
CTGATCGCCGGTTATGGCAGCAC	CCAGACTTCCGGCGGGGACAGTTCG
CTCACCGCCGGCTACGGCAGCAC	CCAAACCGCGCGCAAGGGTAGCGAC
CTCACGACGGGGTACGGCAGCAC	CTCGACCGCCGGCGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC	GCAGACCTCGGGTAGCGAGAGTTCG
CTCACGGCTGGCTATGGCAGTAC	GCAGACCGCACGCAAGGGCAGTGAC
CTCACCGCCGGCTACGGCAGCAC	CTCGACCGCCGGTGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017307.1\|WP_019237209.1\|619540_620188_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP017307.1\|WP_012437210.1\|611313_612159_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017307.1\|WP_011035767.1\|635064_635511_-\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP017307.1\|WP_012437213.1\|617604_618048_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017307.1\|WP_011269479.1\|613841_614456_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP017307.1\|WP_042597267.1\|620184_620817_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP017307.1\|WP_012437216.1\|620813_621788_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NZ_CP017307.1\|WP_011035747.1\|612182_613766_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP017307.1\|WP_075285252.1\|614510_616274_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NZ_CP017307.1\|WP_011035761.1\|629505_630426_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP017307.1\|WP_011035757.1\|626508_626781_-\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NZ_CP017307.1\|WP_011035763.1\|631787_632153_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017307.1\|WP_012437214.1\|618044_619541_+\|TIGR04222-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|275063
NZ_CP017307.1\|WP_011035766.1\|634502_634985_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP017307.1\|WP_040940515.1\|632689_634057_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP017307.1\|WP_011035759.1\|628483_628861_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP017307.1\|WP_012437220.1\|629009_629504_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017307.1\|WP_014509172.1\|634099_634411_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NZ_CP017307.1\|WP_012437212.1\|616270_617608_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NZ_CP017307.1\|WP_011035762.1\|630870_631791_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017307.1\|WP_019237209.1\|619540_620188_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.78683e-10
NZ_CP017307.1\|WP_011269479.1\|613841_614456_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	3.78122e-19
NZ_CP017307.1\|WP_042597267.1\|620184_620817_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.78924e-34
NZ_CP017307.1\|WP_012437216.1\|620813_621788_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	3.29452e-127
NZ_CP017307.1\|WP_011035747.1\|612182_613766_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP017307.1\|WP_075285252.1\|614510_616274_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NZ_CP017307.1\|WP_011035761.1\|629505_630426_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.9931e-137
NZ_CP017307.1\|WP_011035757.1\|626508_626781_-\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	3.72538e-51
NZ_CP017307.1\|WP_014509172.1\|634099_634411_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	4.62397e-43
NZ_CP017307.1\|WP_012437214.1\|618044_619541_+\|TIGR04222-domain-containing-membrane-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	5.67248e-41
NZ_CP017307.1\|WP_011035766.1\|634502_634985_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	7.59427e-76
NZ_CP017307.1\|WP_040940515.1\|632689_634057_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP017307.1\|WP_011035759.1\|628483_628861_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.88605e-09
NZ_CP017307.1\|WP_012437212.1\|616270_617608_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	2.8015e-43
NZ_CP017307.1\|WP_011035767.1\|635064_635511_-\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	2.16112e-92

>NZ_CP017307.1|WP_012437216.1|620813_621788_+|phosphatidate-cytidylyltransferase
MNPYAFSGQLQQSSMHQQTLWLFSGIALVLVVATLISETLRWRARAQPSAVLDNLVARIRAWWVMAGVVGIAFVFGRAGVIGLFALVSLFALREFITLTPTRRGDYYALLAAFYIVLPWQYGLVWTGWYGMYTLLIPVYAFLVLPILATIGGDTTRYLERTAKVQWGLMICVFCISHVPALLNLEIPGYAGRNLLLIAFLVIVVQSSDVLQYVWGKLAGRHLIAPKLSPSKTVEGFIGGVLSASLLGMALWWITPFAPWHAFGLALVANLMGFFGGLVMSAIKRDRGIKDWGHMIEGHGGVLDRLDSVCFAAPVFFHLIRYGWA
>NZ_CP017307.1|WP_042597267.1|620184_620817_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MIARLIARACSGAIRTLTGARALWRGCAPSNERRVYYGNHASHGDFVLIWSSLPASLRHEVRPVAAADYWQRTALRRYLIHAVFNGVLIERDAARRTRDPIECLCDAVDAGDSLILFPEGTRNPDEGVLPFKSGLYHLARQRPELEFVPVWIDNLKRVMPKGKWLPLPLLCTTTFGAPLRLEADEDKQAFLARAREALLALSPDQLEARA
>NZ_CP017307.1|WP_019237209.1|619540_620188_+|CDP-alcohol-phosphatidyltransferase-family-protein
MAHETTGLRARQRQLARALRGRGATPNGVSWVGIAFAALAGLMFYIALSAPAREGAAPLLLALLGLQGRLWCNRLDGVLARQARLVSRAGEVYNDAPDRLSDVLVCIGLGYGLQASVPWAAQLGWAAALCCVATAYVRMLGLACGTAEPRQGPMSRVQRMHWLSLMTVLALPLQWMGQPRAAAWVLIGALAVLIAGAVLTVVLRLRMIVRALEWT
>NZ_CP017307.1|WP_012437214.1|618044_619541_+|TIGR04222-domain-containing-membrane-protein
MTAAPTVPLQATPEQHALWLRLQAYAFGPDADALPAFERRVAQQAHCSVAVAQQLVEEYRRFCFLACTSTAQATPSPLVDQVWHTHLTDTREYWDSFCPQVLQTTLHHQPGRGSAAEDARFQQQYRATLERYELQFGAPPALLWPAPRPAPTAVPAAHDDASAAALRALRGEPAPPSVRRLPRAVIGWAFAAAVAAWLAYSANGGVPQPLQWRGVHFLPFFITLIGLGWSTSAWLRRALRGGRARVVDAVDASEFAYLSGGADRVADLLFTELLVRNAVYLDRDEDAQARRWVRWQPRIAVPPALEPALQALRSAEDPTVAWQALRGLAGPVRQQLIDKGLWLAPGAARWVRAVSTVPVAVVWVLGACKLVIGVQGGSPVGYLLGCMVLTSVLVLGFLLVPVRRTLSGDARLQARRQAVRRDAARTGADPGEAVALYGTVALVGTPWASYHEIRAPNTHHHDSTGSSCGGGGDGGDGGGGDSGGDGGGGCGGCGGGGD
>NZ_CP017307.1|WP_012437213.1|617604_618048_+|hypothetical-protein
MTAVVTLASMRALLRQGAAVDRCAVLLLAAAVLLLGITDAPTVVQVAYALSALAGLAQRYWAFRVGLDADLLDAVLGQLERGHTDDAQAAQQLDQALQDIGLLRHAPPVRDWAARWRGMRGLLRTQLLCAALQVLALAIGLLAKGML
>NZ_CP017307.1|WP_012437212.1|616270_617608_+|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MSAGARPFARAALWLAVLGLFFFLSYGLANTLAGRAASVPSVVFGWEHGMPFWPWTIVPYWSIDVFYAVSFFTCRTRRQLDTHALRLFTAQLLCVSCFLLWPLRYSFVRPDTEGVFGWLFAVLLGFDKPYNQAPSLHIVLLVVLWVRYGAQLQGVWRWLLHGWFALIGISVLTTYQHHFIDVPTGLAAGWLCVWLWPERIAAPWTDARLARDPRRWRLAALYLAGAGVTAGMALWLGGAALWLLWMSGALLLVALNYALLGPGGFQKRSDGQLSLAARWLYAPYLLAAWCNSRLWTRRAPLPRAVCDDVWLGRIPLPAQRAAFAVVVDVSAELSLRHAHANDRIIPMLDLVAPAPASLRAAAQAIEAARAHGSVLVCCALGYSRSAASVVTWLVLSQRAASVSEAMAWVRAARPSIVLGPHHQAAIAAACAGDAAADAPIAQVPA
>NZ_CP017307.1|WP_075285252.1|614510_616274_+|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MRTVVEREFASFDGAPLFYRHWPVQAAADAATPPKAVVLLHRGHEHSGRVMHLAEELQLPDAQFFAWDARGNGRSPGARGDAPGFDALVRDLDSFIAHIGATHGIAVQDIVVIAQSVGAVVASTWVHDYAPPLRALVLASPAFKVKLYVPFARAGLALMQALRGNFFVNSYVKPQWLTHDPARVDSYRTDPLITRPISVRVLLGLYAAGDRVVADAQAITVPTQLLVSGADFVVHRGPQDRFYENLRSPIKQRHFLPGFFHDTLGERDRAVAITQIRQFVSERFAQPPVRADLRDAHRAGPSFEEAERLAWPSQRNSLQDLRWRGVRAGLRLGGTLSEGIALGLQTGFDSGSTLDYIYRNQARGRGPLGRMIDRNYLNAIGWRGIRIRGAHLGELLRATATRLRQAGQPVRVLDIAAGHGRYVLEALGSGAQRADAIVLRDFSPLNVTQGAALIQALGAGDIARFEQGDAFDPVSVGAVDPAPTLAVVSGLYELFADNDQVARSLAGVAAAVPPGGYLLYTGQPWHPQLEFIARALTSHRDGVAWVMRRRSQQEMDGLVEAAGFRKVDQRIDAFGIFTVSLAQRINA
>NZ_CP017307.1|WP_011269479.1|613841_614456_+|CDP-alcohol-phosphatidyltransferase-family-protein
MASIYALKGRFQDLLRPMVGALYRGGITANQVTLIAAAISVLVAAVVYRAGTSWPLLYLLLPVWMLLRMALNAIDGMLAREFGQQSRLGAYLNELCDVVADATLYLSLLGVPGVNASALWSFALLAALTEYAGVLGLMVGAGRRYDGPMGKSDRAFVIGALGLALAFGLLGGHGVTGVALLLCLACAATVWRRVRAGLADAAAR
>NZ_CP017307.1|WP_011035747.1|612182_613766_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MASDFLPVRRALLSVSDKTGLIDLARALVARNVELLSTGGTAKAIRDAGLPVKDVAELTGFPEMMDGRVKTLHPLVHGGLLGRAGVDEAVMAEHGIAPIDLLVLNLYPFESVTAKADCTLADAVENIDIGGPAMLRSAAKNFARVAVATDPAQYADLLAELEANNGQLSAAQRFALSVAAFNRVAQYDAAISNYLSAVADSAESVPTRSPFPAQINSNFIKVMDLRYGENPHQSGAFYRDLYPVPGTLATFQQLQGKELSYNNLADADAAWECVRQFDAPACVIVKHANPCGVAVGVACGDAYELAYATDPTSAFGGILAFNRTLDAATAKAILDRQFVEVLIAPDYEPGALDYATKKANVRVLKIPHGAGLNNYDTKRIGSGLLMQSADNRGMSLGELSVVTKRAPSDAELADLLFAWRVAKYVKSNAIVYAKDSRTIGVGAGQMSRVVSAKIAALKAEEAKLTVAGSVMASDAFFPFRDGIDAAAAAGIQAVIQPGGSMRDGEVIAAADEHGLAMVFTGVRHFRH
>NZ_CP017307.1|WP_012437210.1|611313_612159_-|hypothetical-protein
MHRSHALAALLAAAALLGGCKQAPAPTAAPATKAPATPAATPHLSRTARLEAFVRTRYGDKASLSADWAGEADGFKANSQVCAEQPAVVGEQVQQLLAVCHSLSDGGHGNPGLVDFFVLRGEGDGFKVVAEKLSDTFGSDGQPGSVDILHLGSDFYGFIVHSFWMGQGLLLESQDLVVPGPKGLANAGSLRAHIDNSGSISCEDDAREPDQTEAQCRAEAFNVDFTLDVDSSNIQARTWPLQIHEHGTDCGVALDTTHTFALDTKTWTYPFPNALQREDCR
>NZ_CP017307.1|WP_011035757.1|626508_626781_-|DNA-binding-transcriptional-regulator-Fis
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGLT
>NZ_CP017307.1|WP_011035759.1|628483_628861_-|helix-turn-helix-transcriptional-regulator
MSKLYERVREARSLTKLTQEALAGELGVTRSAVAQWEMAEGTAPSVDNLIGLAKRSGMTFEYLATGRGERVFGPPVSSIAEEPAQYRHLDEQQRVLLSRFDALAPRQRTGLLDLLLAEGKPRRRR
>NZ_CP017307.1|WP_012437220.1|629009_629504_+|hypothetical-protein
MCKRLWGWRAAPRPKPVPPTPWPAYSPLDPAVARFAGAARYLVWRRDQDWTAVIDGLHWGPALAPRWWAWRHRHWRLLAAGMGVLGSAGGLWLASASAGGWLLAWAALGLVELGMRASAVRQASRWRCAALQRAGWQPVTQLRAISVEDAVTTARIRSGELRPE
>NZ_CP017307.1|WP_011035761.1|629505_630426_-|50S-ribosomal-protein-L11-methyltransferase
MPFLELTLPCTRATQPRFENALEDVGALAVTMLDAHAGTINERAILEPGVGEVRLWEETELTALFDGDSDPLMLLAALEAFDPSLDTRHATFRSVEDSAWERAWIDQFKPMRFGARTFIVPWNQDLPEEANTPDAAVVRLDPGLAFGSGTHQTTALCLRWLDALAGEGQLQGCSVLDFGCGSGILALAALKLGAANAVGVDYDPQALLATAENAERNAMEAQMQVYLPQDEPVQTYPVVLANILATALDALAETLAARVAPGGRIALSGIMQGQEQDLVQRYTPWFEHLHCEYDAEWVRIDGVRRH
>NZ_CP017307.1|WP_011035762.1|630870_631791_+|hypothetical-protein
MPLVRARHLWLLLAPAALAAAWWQARPQTAGVAPAAVVETAAAHVAPTAGQPHAVPERSAALQLARGTAGEPPQDLYRYAQQLQQQVRAGDAQAGWRLSRVYDYCAPYAVSPAGYAADSAWIASQPAPGVAAMHAARERVAQRCAGFAPSDGLSPRVVAQQRQAAARAGSLAAEAAMLALGEPLQTTPGYKRALVQRVLASRDPEAYLALAPAMGARASGDDSLDGYVAGDQFAELAWQVAACRLGLDCSAQSTLVTSYCANAGICSRDSAQDFVSFVFDAAVPRQGADKVDEMVDTLVTRSETQS
>NZ_CP017307.1|WP_011035763.1|631787_632153_+|hypothetical-protein
MNYRRLAHGAKFWFWVALFVAYSAAAVGIVMIDTADHRYQPLSVKRITVGADAQLRQHGASQVAAVYRASSGMPFASLPAGATFQVVWPDGSTETMTVVDPSSPSGAVPVPGSQQPAAKRR
>NZ_CP017307.1|WP_040940515.1|632689_634057_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGPAASSDSYLNIPALIAAAEVTDAQAIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGGPLGDEIVANTKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEELRAEIGKVCVDACIRIGYRGAGTFEFLFEGGRFYFIEMNTRIQVEHPVTERITGIDLVCEQLRIAAGHKLSIKQSDIVLRGHAIECRINAEDPETFMPNPGLITAFHPPGGPGVRVDTHIYAGYKVPPNYDSMIGKLIVHGPDRETAIARMRVALSEMVVDGIKTNIPLQQRIMRDKGFQAGGQNIHYLEKRLAERKNKSIALV
>NZ_CP017307.1|WP_014509172.1|634099_634411_-|four-helix-bundle-protein
MIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRRGAA
>NZ_CP017307.1|WP_011035766.1|634502_634985_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKIKKLIDLLEESNLAEIEIKEGEESVRLARVPKGTQVMSAPMQQYAPAPAAPAPAATMPMQSPTEASTGGAKQGAALPEGHVLRAPMVGTFYTSPSPDKPAFVTVGQQVKAGETLAIIEAMKMFNPIEADISGTIVAVLSDTGQPVEFDQPLFVIG
>NZ_CP017307.1|WP_011035767.1|635064_635511_-|type-II-3-dehydroquinate-dehydratase
MAHLLLLHGPNLNLLGTREPEVYGRTTLAQIDAALVDRAQAAGHTLDCLQSNAEHVLVERIHAAREDGTAFILINPAAFTHTSVSLRDALLGVGLPFVEIHLSNPHTREPFRHHSYLSDKAAGVICGFGADSYRLALEAVIARLERDS

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Crispr_ID: NZ_CP017307_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017307_2

694692-694833

Orphan

Consensus_repeat	Method
GCCAACGCATCAGCACCGTAGGAGCACGCTCGCGCGCGATGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017307_2

>merge|NZ_CP017307|2|694692-694833|CRISPRCasFinder
GCCAACGCATCAGCACCGTAGGAGCACGCTCGCGCGCGATGGGTGTTACCGGTAAGGCCTCGATCGCGCACCAGTGCGCTCCGACGCAAGCAGTTTCCAGCCAACGCATCAGCACCGTAGGAGCACGCTCGCGCGCGATGGG

>NZ_CP017307|2|2|694692-694833|CRISPRCasFinder
GCCAACGCATCAGCACCGTAGGAGCACGCTCGCGCGCGATGGG	TGTTACCGGTAAGGCCTCGATCGCGCACCAGTGCGCTCCGACGCAAGCAGTTTCCA
GCCAACGCATCAGCACCGTAGGAGCACGCTCGCGCGCGATGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017307.1\|WP_011269490.1\|686859_687363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017307.1\|WP_075285272.1\|697482_698322_+\|triphosphoribosyl-dephospho-CoA-synthase-MdcB	unknown	unknown	gnl\|CDD\|274440
NZ_CP017307.1\|WP_040940532.1\|687359_688220_-\|DUF2145-domain-containing-protein	unknown	unknown	gnl\|CDD\|370750
NZ_CP017307.1\|WP_075285274.1\|699495_700851_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|115789
NZ_CP017307.1\|WP_075285268.1\|690975_691764_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP017307.1\|WP_040942211.1\|688266_689214_-\|nucleoside-diphosphate-sugar-epimerase	unknown	unknown	gnl\|CDD\|377637
NZ_CP017307.1\|WP_011038694.1\|694259_694577_+\|malonate-decarboxylase-acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179367
NZ_CP017307.1\|WP_075285269.1\|691872_692406_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP017307.1\|WP_019237360.1\|695810_696515_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|369102
NZ_CP017307.1\|WP_011038697.1\|696517_697159_+\|malonate-decarboxylase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|234998
NZ_CP017307.1\|WP_011038703.1\|703516_703936_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP017307.1\|WP_075285273.1\|698485_699406_+\|malonate-decarboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|132175
NZ_CP017307.1\|WP_075285267.1\|686073_686631_-\|VUT-family-protein	unknown	unknown	gnl\|CDD\|224652
NZ_CP017307.1\|WP_075285275.1\|702800_703424_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319799
NZ_CP017307.1\|WP_011038701.1\|700930_701650_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP017307.1\|WP_042597212.1\|703932_704364_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP017307.1\|WP_012437248.1\|690030_690753_+\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
NZ_CP017307.1\|WP_075285271.1\|694899_695814_+\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NZ_CP017307.1\|WP_075285270.1\|692603_694250_+\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NZ_CP017307.1\|WP_011038689.1\|689349_689940_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040

Protein	Function_ID	Function_description	E-value
NZ_CP017307.1\|WP_075285272.1\|697482_698322_+\|triphosphoribosyl-dephospho-CoA-synthase-MdcB	gnl\|CDD\|274440	TIGR03132, malonate_mdcB, triphosphoribosyl-dephospho-CoA synthase MdcB. This protein acts in cofactor biosynthesis, preparing the coenzyme A derivative that becomes attached to the malonate decarboxylase acyl carrier protein (or delta subunit). The closely related protein CitG of citrate lyase produces the same molecule, but the two families are nonetheless readily separated. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.59579e-91
NZ_CP017307.1\|WP_040940532.1\|687359_688220_-\|DUF2145-domain-containing-protein	gnl\|CDD\|370750	pfam09916, DUF2145, Uncharacterized protein conserved in bacteria (DUF2145). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.33657e-89
NZ_CP017307.1\|WP_075285274.1\|699495_700851_+\|hypothetical-protein	gnl\|CDD\|115789	pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus. This family represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier.	4.82743e-64
NZ_CP017307.1\|WP_075285268.1\|690975_691764_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	7.47605e-92
NZ_CP017307.1\|WP_040942211.1\|688266_689214_-\|nucleoside-diphosphate-sugar-epimerase	gnl\|CDD\|377637	pfam06258, Mito_fiss_Elm1, Mitochondrial fission ELM1. In plants, this family is involved in mitochondrial fission. It binds to dynamin-related proteins and plays a role in their relocation from the cytosol to mitochondrial fission sites. Its function in bacteria is unknown.	1.75572e-94
NZ_CP017307.1\|WP_011038694.1\|694259_694577_+\|malonate-decarboxylase-acyl-carrier-protein	gnl\|CDD\|179367	PRK02103, PRK02103, malonate decarboxylase acyl carrier protein.	3.2252e-55
NZ_CP017307.1\|WP_075285269.1\|691872_692406_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.4638e-19
NZ_CP017307.1\|WP_019237360.1\|695810_696515_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|369102	pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyzes the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.	1.31084e-96
NZ_CP017307.1\|WP_011038697.1\|696517_697159_+\|malonate-decarboxylase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|234998	PRK02098, PRK02098, phosphoribosyl-dephospho-CoA transferase; Provisional.	1.02477e-90
NZ_CP017307.1\|WP_011038703.1\|703516_703936_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	8.94418e-23
NZ_CP017307.1\|WP_075285273.1\|698485_699406_+\|malonate-decarboxylase-subunit-epsilon	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	7.40671e-94
NZ_CP017307.1\|WP_075285267.1\|686073_686631_-\|VUT-family-protein	gnl\|CDD\|224652	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only].	7.26609e-31
NZ_CP017307.1\|WP_075285275.1\|702800_703424_-\|HAD-family-hydrolase	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.96818e-99
NZ_CP017307.1\|WP_011038701.1\|700930_701650_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	6.48359e-43
NZ_CP017307.1\|WP_042597212.1\|703932_704364_-\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	2.88494e-30
NZ_CP017307.1\|WP_012437248.1\|690030_690753_+\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	6.05654e-61
NZ_CP017307.1\|WP_075285271.1\|694899_695814_+\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	1.39048e-153
NZ_CP017307.1\|WP_075285270.1\|692603_694250_+\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NZ_CP017307.1\|WP_011038689.1\|689349_689940_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	2.14991e-128

>NZ_CP017307.1|WP_011038694.1|694259_694577_+|malonate-decarboxylase-acyl-carrier-protein
METLRYRFDGRNGARTGLDHALVGVVASGNLEVLVERVPLGGAMEIEIVTAARGFGEIWQAVLDDFAARHSLQDVRISINDVGATPAVVSLRLEQAIDVLQGADA
>NZ_CP017307.1|WP_075285270.1|692603_694250_+|malonate-decarboxylase-subunit-alpha
MSRQWDTQAESRRQRLQRAAALAPRGRVVAADDVVALLEAVIEPGDRVCLEGNNQKQADFLARCLTEVDPARVHDLHMVQSVLSLPAHLDVFERGIAKRLDFSFSGPQAARLAGLVSEGRIEIGAIHTYLELFGRYFIDLTPRIALVTAQAADRHGNLYTGPNTEDTPVIVEATAFKGGIVIAQVNEILDTLPRVDIPADWVDFVTHAPKPNYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVDRLNHGIGFDTAAIELLLPTYAESLGLKGKICRHWALNPHPALIPAIESGFVQSVHSFGSELGMEKYIAARPDVFFTGADGSMRSNRALSQTAGLYACDMFIGSTLQIDLQGNSSTATRDRIAGFGGAPNMGSDARGRRHASAAWLKAGREAARPGEMPRGRKLVVQMVETFREHMAPAFVDKLDAWELAERANLPLPPVMIYGDDVSHVLTEEGIANLLLCRTPEEREQAIRGVSGYTTVGLGRDKRMVENLRDRGVIKRPDDLGIRPRDATRDLLAARTVKDLVRWSGGLYDPPKRFRNW
>NZ_CP017307.1|WP_075285269.1|691872_692406_-|helix-turn-helix-transcriptional-regulator
MQAPSDPIAASDFDSPVGRARRGRTARPLGHGDLRLLLLALIEQQPRHGYELMRQIAQLFKGLYTPSAGTIYPALAQLEADGWVLTDQDHGRKRYQITEAGRGHASAHRDALDAALARTHRRARDLIKAQTPPPIRDAIHRIKHGLFARHGQWTEAETARIAALLNAAADGMEPGDT
>NZ_CP017307.1|WP_075285268.1|690975_691764_-|siderophore-interacting-protein
MAAHTNTQVRRDPRLRSVQVLRCETITPQMRRIVFGGSELAGFQSDAPDDHVKLFFPNADGAFVLPTMTAEGPRYDAGAVPSPGRDYTPRYFDPQSGELSIDFVLHGDGVASSWAAQAQPGDDLKIGGPRGSFLVADDYDHYVLLGDETALPAIGRWLEAMPADMHAEVYIEIADAAERQELLSAADVDIYWLERNGFDAATSTLLEDSLRDYEPHDGDTFYWIGAESMRARAMRKFLEEHLQVDKESVRAKGYWKANPAGE
>NZ_CP017307.1|WP_012437248.1|690030_690753_+|polyisoprenoid-binding-protein
MKTTHKLLLPLALTLAIAACSKPADNAAAPAAETPAATAPADAAAAAPAPAADASTAPAVQVASGTYTLDPTHTDVLAQWSHFGFSNPTAHFGNVDGTLVYDAADVTKSTVQVTLPLSGLNSFTAKFDEHLKSGDFFDAAKFPSATFKSTKVESAGTNKLTVTGDLTIKDQTKPVVLDVTLNGAGEHPMKKVPAAGFDATTTIKRSDFGVGQYAPNVSDEVKIRITTEALQAKAGDAAAK
>NZ_CP017307.1|WP_011038689.1|689349_689940_+|malonic-semialdehyde-reductase
MSDLLNAAALDQLFRTARTQNAFLDTPVSEDLLRELYDLVKWGPTAANGSPARFVFVTTAEGKEKLKPALSEGNAAKTLAAPVTAIIGFDEDFHEKLPYLFPHADAKSWFDGPRTARTESAFRNSSLQGAYLILAARALGLDAGPMSGFDNAKVDAAFFAGTPIKSNFLVNLGYGDPAGLFPRLPRLSFDEAARIA
>NZ_CP017307.1|WP_040942211.1|688266_689214_-|nucleoside-diphosphate-sugar-epimerase
MAVTWAVSDGRAGNARQAEALARALHPDTLHALHLQARAPWRWAAPRRLPGASAAFGPAFAAQLQQPPGLAIGCGRQAALATRLLRARGSVAVQILDPRLDRRQWDLVVVPEHDALRGENVLTLLGSLHPVDDAWLAAGRAAFPAVGALPGPRVALLIGGPTTQVPWTSQALAAQCNAVQAQVRAAGGSLLITASRRTPPEAVALLRTLQQGNPGLLWCDARDGANPYAGLLGWADAIVASADSVNLLSEACATPVPVVAACAEFARGRVGAYVQALQQRQRLCAADEVLAATAAMTPVRETERIAAQVRMRLGL
>NZ_CP017307.1|WP_040940532.1|687359_688220_-|DUF2145-domain-containing-protein
MQRSHGHRMRYAMAIMLFLATLPAIGAPTCIPHYPTPATLAAMFDLARSTQQTLDRLDGARVVLLARGGQDLSRYGLKHSHLAFALREDDGNWRVTHLLNHCKSDTSELYREGLSNFIGESALHADLRVGVPSPEVQQTLQHLLQDPGTLAHALHTPRYSMIAYPFSTDYQNSNQWVLEVLAAALAQSDAQATAVAAPVVDRRSAQAWLKHADYQPTRLHLDLSKRIGARFFVANAAVSDHPANERISGNYSVITVESVFDFLQQRKALLQEFSIPRSAAAHGASP
>NZ_CP017307.1|WP_011269490.1|686859_687363_-|hypothetical-protein
MTSSFRSVSLVALLALSAGQPMQAQAGLTTITRGDASAMSAILVISAPYFVSLALTHSAVAGSEALTHASNKASAGPLPPMRVTSVGPTPDGGSEVQLQDPAQAANTALLRWPVRNDAPAAGFRVGETVTFQPSPAGAGWTVQSAQGEALAFVPTAESAAQNSSQAW
>NZ_CP017307.1|WP_075285267.1|686073_686631_-|VUT-family-protein
MPAAPAPTFAPLTVRALLWAVSAMGAVVLLSNILVQYPINDWLTWGAFSYPLAFLVSNLINRRFGPRAARTVAWCGFALAVVLSIWLATPRIAIASCSAFIAAQLLDISVFDRLRNGNWWRAPIVATTCSATLDTAIFWSIAFAGAGLPWISWAAGDLAVKLGMGVFLLGPFRALLWRSAPRASR
>NZ_CP017307.1|WP_075285271.1|694899_695814_+|biotin-independent-malonate-decarboxylase-subunit-beta
MSTTVPMAERSYYEADARERIDGLLDAGSFTEFVGPRRRLISPHLAQLDTPGAFDDGIVVGEGRLRGRHVLIAAQQGAFMGGGVGEVHGAKLTGLLERAAATTPDAVVLLLDTGGVRLHEANAGLIAISEIMRATLGARAAGVPVLALIGSGNGAFGGMGIVARCCSAVIMSEEGRLSLSGPDVIETVRGVEEFDARDRALVWRVTGGKHRYLIGDAQTLVPDRIAAFADAAATTLYTLAEPQGDAALQALEREHHALAARITAYGDCRDGVEIWRRQGIADPERLPLLDTDAFLAATADRSTP
>NZ_CP017307.1|WP_019237360.1|695810_696515_+|biotin-independent-malonate-decarboxylase-subunit-gamma
MTLSALFDQLFPLGHAIACHDDVLTGSATTAAGEVTVIGTANKLEVGVDHALALAATVLASTRTHPQRPIVMLADTAGQRLARRDELLGINGYFAHLAKSLDLARARGARLVTLVYGESVSGGFLSFGLMADHIHALPDAQIRVMDLRAMARVTKQTVDTLQALSKSSPVFAPGVENYVRMGAVESLWDGDLAQALLDALATPSTGDQRRTLGAERGGRTLARDVSAAVAAGEA
>NZ_CP017307.1|WP_011038697.1|696517_697159_+|malonate-decarboxylase-holo-[acyl-carrier-protein]-synthase
MAGRHALVWLRADAPSQALTPGAQPRLQAWFAAGFPAVVARRDGAEQPGQVRLGVPLPPAQGKQRIALCAQVSDIARSVPALALPEVISHAPPQWQAALHALQAQATAIGMQPRVFGSFAFQAVTGLPYVHAASDVDLLWTLDTPTQAHAVVTLLQQWEHVTARRADGELLLPDGNAVNWREYAGDAQQVLVKRNDGCRLLPRTALFPERCAA
>NZ_CP017307.1|WP_075285272.1|697482_698322_+|triphosphoribosyl-dephospho-CoA-synthase-MdcB
MPSAATASHLTHRLGRLAVCALHAELACAPKPGLVTPFDAGSHTDMDASTFLRSLFALRGYFVAIAQAGIAQAPFEHLRQLGIAAEAAMARATGCINTHRGAIFSLGLLTAQAARLRAVHGRQPSGEQVCCAVQAWSAALQAAPLDSQSHGQRMRAQYRVAGVREQAAAGYPLLRDVALPSLRAALAGGASREAALAQTLMQLIAEVDDLNLLHRGGQAGLAHAQQQARAFLAAGGIAQAGWRAQLARIGDGFVVRRLSPGGSADLLACAWFLHAQEAL
>NZ_CP017307.1|WP_075285273.1|698485_699406_+|malonate-decarboxylase-subunit-epsilon
MSLAILCPGQGGQHAGMFARIAQLPVASEVIATAASVLGADPIALAADPRRFDNAIAQPLVCAGTLAHWQALRAQLPTPTLVLGYSVGELTAHAVAGSIDIPTCLHLAATRARVMDAASPADAGLMAVVGLPITALDALCQSHGVALAIINGDDHAVLGGPRSALAALGNDASARGARVTHLPVSVPAHTHWLQPAADAFAAVLQDSAVRAPTHRVLAGIDARAVTTPQAVVSSLSAQIARTVRWHDVLVQAAERGARVFLELGPGSALARMARELLPACEARSVEDFHSLDGAAEWVSAACERVA
>NZ_CP017307.1|WP_075285274.1|699495_700851_+|hypothetical-protein
MTPQIATILGLVIMFIVATALPINMGAVAFALAFIIGGVWVGLDGKEVLAGFPGDLFLTLVGITYLFAIAQKNGTIDLLVHWAVRAVRGRIVAIPWVMFLITGLLTAFGALGPAAVAIIGPVALRFAKQYRINPLMMGLLVIHGAQGGGFSPISVYGGITNKVVEKAGLDVTEMAVFLTSLGFNLMMAIICFCAFGGLQLMRRNELSLADAQYVPVADDQASKRPFAIEGHGALVAAGGGTLSTNPLALEAVAITRDRVITLVGLLGLGVAALVYNLNVGLVSITVAVALALISPSAQKGAVDGISWSTVLLISGVVTYVAVLEEAGAVDYIGTGVSHIGMPLLGALLVCYVGGIVSAFASSAAVLGATIPLAVPFLMQGHLGAAGVICALAVSSTIVDVSPFSTNGALVVASAAKEERDALFRRFLVYSGLVVVLGPLVAWLLFVVPGWL
>NZ_CP017307.1|WP_011038701.1|700930_701650_+|GntR-family-transcriptional-regulator
MTLAPDSRTTKKRVPLYEEVAERLRQKIYDYVLPPGEWIDEPALAEELGISRTPLRESLKLLAAEGLVQLDAGRGSRVTRLSLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELHAAMEAASAAGDLAEYYRNNYLIHETVQHYAGNPWLIRVTHDLHRILKMHRGRQLLTPGRMAQSLAEHRELMECVRRGDAEGAERTMHTHLLSQGQALAAYVAAGGMLNVPAPLPRSGGV
>NZ_CP017307.1|WP_075285275.1|702800_703424_-|HAD-family-hydrolase
MPTLIIFDFDGTLADSFGFFLSTQRTLAARHGFRAAEAHEVDAARRLTTRELLKHSGLRSWRLPLVAADFIRLMRAAPPPALFPGVDAALRALHASGTRLALVSSNSVENVQRALGAELSALFEVFEGGAHLLGKHRALRRVLRATGHTAAQAIYVGDQVADWEAAQVLGLPFAAVAWGYAHPDVFMQLPNTHLIEEVEGLIALPGH
>NZ_CP017307.1|WP_011038703.1|703516_703936_-|STAS-domain-containing-protein
MTTLAIQIDPPQDTRQRVTLSGRLDTHTFHDLDEALSPLLATPITTLVLDLADLEYISSAGIRSIFKARKALATRHGKVLVAHPQPQIRKVFDMVKAVPLSDVFASTEELDAYLSTMQRKVIEEHANGDAPIVSHFANA
>NZ_CP017307.1|WP_042597212.1|703932_704364_-|ATP-binding-protein
MKLDLAIAPSLAQLAGANDVLEDSLAREGLHAERIGQVRLIVEELGCNALTHGQCAEQPLQLYLQLDAQALVLELRDPGSAFDPCQASTPELEADLEARPIGGLGLYLVHQFADHIHYHRDGAYNVVRITLLQPYAPVPEALP

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Crispr_ID: NZ_CP017307_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017307_3

2659847-2659934

Orphan

Consensus_repeat	Method
TGCCCGGCCACCATCGCGGGACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017307_3

>merge|NZ_CP017307|3|2659847-2659934|CRISPRCasFinder
TGCCCGGCCACCATCGCGGGACACCCTTTAGAGCGGCTGATCTGCGACTTGGTTGCAAGGCCCCTGCCCGCCCACCATCGCGGGACAC

>NZ_CP017307|3|3|2659847-2659934|CRISPRCasFinder
TGCCCGGCCACCATCGCGGGACAC	CCTTTAGAGCGGCTGATCTGCGACTTGGTTGCAAGGCCCC
TGCCCGCCCACCATCGCGGGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017307.1\|WP_011037109.1\|2663213_2664401_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|237180
NZ_CP017307.1\|WP_114319350.1\|2669230_2670559_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|311255
NZ_CP017307.1\|WP_011037120.1\|2652784_2653117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017307.1\|WP_011037106.1\|2667810_2669010_+\|flagellin	unknown	unknown	gnl\|CDD\|236344
NZ_CP017307.1\|WP_011037119.1\|2653131_2653443_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP017307.1\|WP_075285693.1\|2664412_2666287_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|183697
NZ_CP017307.1\|WP_011037118.1\|2653509_2654154_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP017307.1\|WP_016945285.1\|2671128_2671422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340989
NZ_CP017307.1\|WP_002813454.1\|2656361_2656769_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_CP017307.1\|WP_011037112.1\|2658856_2659612_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP017307.1\|WP_050911506.1\|2656792_2657458_+\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|183639
NZ_CP017307.1\|WP_011037113.1\|2657489_2658713_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_CP017307.1\|WP_011037116.1\|2655956_2656358_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP017307.1\|WP_011037111.1\|2661390_2662083_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP017307.1\|WP_075285692.1\|2660566_2661352_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP017307.1\|WP_011037104.1\|2670706_2671120_+\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|235560
NZ_CP017307.1\|WP_011037121.1\|2651480_2652707_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NZ_CP017307.1\|WP_075285694.1\|2666286_2667492_+\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|236345
NZ_CP017307.1\|WP_014507703.1\|2662093_2663212_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_CP017307.1\|WP_011037117.1\|2654547_2655492_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151

Protein	Function_ID	Function_description	E-value
NZ_CP017307.1\|WP_011037109.1\|2663213_2664401_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|237180	PRK12711, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	0
NZ_CP017307.1\|WP_114319350.1\|2669230_2670559_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|311255	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus. The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.	4.59027e-57
NZ_CP017307.1\|WP_075285693.1\|2664412_2666287_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|183697	PRK12714, flgK, flagellar hook-associated protein FlgK; Provisional.	0
NZ_CP017307.1\|WP_011037106.1\|2667810_2669010_+\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	6.92586e-148
NZ_CP017307.1\|WP_011037119.1\|2653131_2653443_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.03432e-14
NZ_CP017307.1\|WP_011037118.1\|2653509_2654154_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	4.43762e-124
NZ_CP017307.1\|WP_016945285.1\|2671128_2671422_+\|hypothetical-protein	gnl\|CDD\|340989	cd17431, MFS_GLUT_Class1, Class 1 Glucose transporters (GLUTs) of the Major Facilitator Superfamily. GLUTs, also called Solute carrier family 2, facilitated glucose transporters (SLC2A), are a family of proteins that facilitate the transport of hexoses such as glucose and fructose. There are fourteen GLUTs found in humans; they display different substrate specificities and tissue expression. They have been categorized into three classes based on sequence similarity: Class 1 (GLUTs 1-4, 14); Class 2 (GLUTs 5, 7, 9, and 11); and Class 3 (GLUTs 6, 8, 10, 12, and HMIT). GLUTs 1-4 are well-established as glucose and/or fructose transporters in various tissues and cell types. GLUT1, also called solute carrier family 2, facilitated glucose transporter member 1 (SLC2A1), displays broad substrate specificity and can transport a wide range of pentoses and hexoses including glucose, galactose, mannose, and glucosamine. It is found in the brain, erythrocytes, and in many fetal tissues. GLUT2 (or SLC2A2) is found in the liver, islet of Langerhans, intestine, and kidney, and is the isoform that likely mediates the bidirectional transfer of glucose across the plasma membrane of hepatocytes and is responsible for uptake of glucose by beta cells. GLUT3 (or SLC2A3) is found in the brain and can mediates the uptake of glucose, 2-deoxyglucose, galactose, mannose, xylose and fucose, and dehydroascorbate. GLUT4 (or SLC2A4) is an insulin-regulated facilitative glucose transporter found in adipose tissues, and in skeletal and cardiac muscle. GLUT14 (or SLC2A14) is an orphan transporter expressed mainly in the testis. GLUT proteins are comprised of about 500 amino acid residues, possess a single N-linked oligosaccharide, and have 12 transmembrane segments. They belong to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.0014863
NZ_CP017307.1\|WP_002813454.1\|2656361_2656769_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	1.73515e-84
NZ_CP017307.1\|WP_011037112.1\|2658856_2659612_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	3.04931e-127
NZ_CP017307.1\|WP_050911506.1\|2656792_2657458_+\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|183639	PRK12634, flgD, flagellar basal body rod modification protein; Reviewed.	2.90571e-132
NZ_CP017307.1\|WP_011037113.1\|2657489_2658713_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	1.34821e-159
NZ_CP017307.1\|WP_011037116.1\|2655956_2656358_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.52839e-84
NZ_CP017307.1\|WP_011037111.1\|2661390_2662083_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	2.01452e-83
NZ_CP017307.1\|WP_075285692.1\|2660566_2661352_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	2.42352e-154
NZ_CP017307.1\|WP_011037104.1\|2670706_2671120_+\|flagellar-export-chaperone-FliS	gnl\|CDD\|235560	PRK05685, fliS, flagellar export chaperone FliS.	1.15393e-45
NZ_CP017307.1\|WP_011037121.1\|2651480_2652707_-\|sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.36825e-52
NZ_CP017307.1\|WP_075285694.1\|2666286_2667492_+\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|236345	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed.	2.68897e-153
NZ_CP017307.1\|WP_014507703.1\|2662093_2663212_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_CP017307.1\|WP_011037117.1\|2654547_2655492_+\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.15499e-39

>NZ_CP017307.1|WP_011037112.1|2658856_2659612_+|flagellar-basal-body-rod-protein-FlgF
MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFQIRGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHAVLDEGGNPMTIPPHQAMEIGSDGSISIIPQGEGPQTMAIVGKMKVVDAPADRLMRRPDGLMRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQSANSLLRVSG
>NZ_CP017307.1|WP_011037113.1|2657489_2658713_+|flagellar-hook-protein-FlgE
MAFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVSNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQGARLQVFAPNPSGNGFDVGRLSDLQLLTTDSPPKSTSTVNLAFTLPGNASAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFVKTANPNEWQVHNYVDGSAVGAPTTLQFSDTGSLTTPANGIVAMDPFTPSTGAGVLSMQLNVSGSTQYGEAFALRDTRQDGYASGKLNEISIDTSGVVFARYSNGADKALGQVALNSFVNPQGLQSQGNNMWAESYTSGAARVGAPDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINIR
>NZ_CP017307.1|WP_050911506.1|2656792_2657458_+|flagellar-basal-body-rod-modification-protein
MSTIGSDLYNSLGLTTSSKVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVGNFSDSMNSDQVLKGAALVGHNVLVPSAQVTIDATGSAKGVVAATSAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQTDTAGAKSKLATYVDAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS
>NZ_CP017307.1|WP_002813454.1|2656361_2656769_+|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQQNRQDPSLTSVNVKEITTTNAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR
>NZ_CP017307.1|WP_011037116.1|2655956_2656358_+|flagellar-basal-body-rod-protein-FlgB
MSSPFTSFLGIHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKAAEGVRDGGLMQATDAKHYEIGSTAGLNPFQITREADQPSLDGNTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAITGQ
>NZ_CP017307.1|WP_011037117.1|2654547_2655492_+|chemotaxis-protein-CheV
MTHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPTEFAGVADVRGRSVPVLDLGLAIGHPERDPHGDNGPGYLVVAEFNRSVQGFLVSGVERIVNIAVEDIHPPPELGAEATYLTAVTRFQGELIQVIDVESVLADIAKVSKDVQLDPGLQLVTSDRQFQVLVVDDSRVARQQIRSVLDQLGVAATLLSDGRQALDHLLQVAASGENPAERYAMVISDIEMPAMDGYTLTTEIRRTPGLQGLYVLLHTSLSGVFNNAMVEQVGANAFVAKYSAHELADYVLARLRVVAEAA
>NZ_CP017307.1|WP_011037118.1|2653509_2654154_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MRLLLLVILLVSAPAWADGYQSVDSIRAAALATVGPDAEAEATLDPGLRMPACPIALQAQPTGTNTVEVACPQPAGWRLFVPLKVRRNQDVLVLRRGITSGETISLADISIEKRDAARIVGAVLADPATAVGKTARRILPAGTLLSANDLVTPRLVRRGDTVPLVSRNGGLEVRMSGRALSDAGENERVSVENSSSRRVVQGIVEASGTVVVSR
>NZ_CP017307.1|WP_011037119.1|2653131_2653443_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIEGNLPTAATLRTATVGSKIASAGEDRASPVAATPPTDSVKLTGEATNLQALQRELSQSSAIDTGRVQAVKEALQNGSYSINPDAIASRMMDLNQQLAG
>NZ_CP017307.1|WP_011037120.1|2652784_2653117_-|hypothetical-protein
MNVNDSLQRLSDALAGERQALIEHDIESLMRHTQDKLAALRALEVQMPEGQEERLRELAEANRANGALLARRRREVNWALRHLGRTESAPSYDANGQSSVLRAGRSLAVA
>NZ_CP017307.1|WP_011037121.1|2651480_2652707_-|sensor-histidine-kinase
MTAKFFLNQTLLPSSAMLRAFGDQMLEGVLLFRADGQLIMANAIARQSLCKEDPTDDRNLGERISQVLPADALNQARSKGTWTGSLPVSDRVVIAHLYYNEEQGVGHFLALFHNIEGQQDYERELQQRHAELRQAYLRLNGAQDKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTLIEAYERALQAPDPKALIPEIDEIRNRADIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSDRSESWKMVDLHAGLESTINIIWNELKYKVTLERNYAELPLVECLPSELNQVYMNLLLNAGQAIVERGTITVTTGRDEAENVWIQFQDSGAGIAPDLLQRIFDPFFTTKPVGSGTGLGLSISYGIINKHHGRIDVESVPGQGASFRIVLPVRQPR
>NZ_CP017307.1|WP_075285692.1|2660566_2661352_+|flagellar-basal-body-rod-protein-FlgG
MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGEVVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAAQAAAQEIGALTLTDFINPSGLQAKGENLFVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEELVSMIETQRAYEMNAKAISTTDSMLGYLNNNV
>NZ_CP017307.1|WP_011037111.1|2661390_2662083_+|flagellar-basal-body-L-ring-protein-FlgH
MSRLPSLSSLCLAIACSALLGGCVAAGDVRPFAELAPIVPVVAPVAQPTAGAIYAAGPSLNLYGDRRARDVGDLLTVNLVENTTASSTANTSISKADTVDMSTPTLLGVPLTVNGIDVLRNSTSGDRSFDGKGNTAQSNRMQGSVTVTVMQRLPNGNLVIQGQKNLRLTQGDELVQVQGIVRAADIAPDNSVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY
>NZ_CP017307.1|WP_014507703.1|2662093_2663212_+|flagellar-basal-body-P-ring-protein-FlgI
MNLSSLPHRLLAAAVALCAIAAPASAERIKDLAQVGGVRGNALVGYGLVVGLDGSGDRTSQAPFTVQSLKNLLGELGVNVPANVNPQLKNVAAVAIHAELPPFAKPGQPIDITVSSIANAVSLRGGSLLMAPLKGADGQVYAMAQGNLVVGGFGAQGKDGSRVSVNIPSVGRIPNGATVERALPDVFAGSGEITLNLHQNDFTTVSRMVAAIDNSFGAGTARAVDGVTVSVRSPTDPSARIGLLARLENVELSPGDAPAKVVVNARTGTVVIGQLVRVMPAAIAHGSLTVTISENTNVSQPGAFSGGRTAVTPQSTITATSEGSRMFKFEGGTTLDQIVRAVNEVGAAPGDLVAILEALKQAGALTAELEVI
>NZ_CP017307.1|WP_011037109.1|2663213_2664401_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MRISASPIDLNPSTKADPAKIDKVSRQLEGQFAQMLVKSMRDASSGDPMFPGENQMFREMYDQQMAKALTDGKGLGLSAMISKQLSGDTGGPALNTSLSTADAAKAYALVAGKRDASLPLPARDGAATSVGASLGAAVGTAAGIGAGGLTGIGMSQVLDLIAGRTGGEAGGDDAAALSWPSANDRWSDVTATDAADANAAVNATAASSAAASLGERTPEGFVAKIWTHAQKAARELGVDPRALVAQAALETGWGRRGIGNGGDSNNLFGIKATGWNGAKVTTGTHEYVNGVKTTETADFRAYGSAEESFADYVRLLKNNSRYQTALQAGTDIKGFARGLQQAGYATDPGYAAKIAAIANGPTIDRAVAAIGNAAADLSNRYASTAEPVGLGTIRR
>NZ_CP017307.1|WP_075285693.1|2664412_2666287_+|flagellar-hook-associated-protein-FlgK
MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKISDVGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDSLYSNTATNVAGLWSNFFDSASALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGNSIDNASADLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAAKLTTVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSNVLEPTQAELGRLAVGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGSAALTASFSNLGAVDGQNVTLSFDAGSWKATRTDTGSTVPLTGTGTAADPLVVNGVSMVVGGTPANGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATIANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQYTIDGTGPFAYTPGQTISANGWSFALDGAPKAGDTFGVGPMGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSVGSAARAANYAADAQEVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTIFQAILGAVR
>NZ_CP017307.1|WP_075285694.1|2666286_2667492_+|flagellar-hook-associated-protein-FlgL
MTNRISTSMMYSQSVSAMTAKQSRLNQLEAQLSSGQRLVTAKDDPVAAGTAVGLDRALAAITRFGENANNVQNRLGLQENALAQAGDKMARVTELAVQSNNSSLSPDDRKAIASELTALRDSMVSLANSTDGTGRYLFAGTSDGNAPFIKGNGNVLYNGDQTQKQVEVAPDTFVSDTLPGSEIFMRIRTGDGSVDSHANATNTGTGLLLDFSRDASSGSWNGGSYSVQFTAADTYEVRDSTNALVSTGTYKDGEDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDMVAALNSDTQTPTQKAAMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLSSIRDLDYASAIGQYELERASLQAAQTIFQQMQSSSLFNLIR
>NZ_CP017307.1|WP_011037106.1|2667810_2669010_+|flagellin
MAQVINTNVMSLNAQRNLNTNSSSMALSIQQLSSGKRITSASVDAAGLAISERFTTQIRGLDVASRNANDGISLAQTAEGAMVEIGNNLQRIRELSVQSANATNSATDREALNSEVKQLTSEIDRVANQTSFNGTKLLNGDFSGALFQVGADAGQTIGINSIVDANVDSLGKANFAASVSGAGVTGAATASGSLSGITLAFKDASGAAKSVAVADIKIASGDTAADINKKVASAINDKLDQTGMYASIDTSGNVKLESLKAGQDFTSLSGGTSGAAGITAGAGIQTASAASGSTASTLSSLDISTFSGAQKALEIVDKALTSVNSSRADMGAVQNRFTSTIANLAATSENLTASRSRIADTDYAKTTAELTRTQILQQAGTAMLAQAKSVPQNVLSLLQ
>NZ_CP017307.1|WP_114319350.1|2669230_2670559_+|flagellar-filament-capping-protein-FliD
MASVISTSSSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVVSSADTNAYKASVPTDAGFTATTTSSAAPGNYSVEVVSLASAQKLASGAFTADATVGSGTLTIGYGDKSITVDISGTDKLTDIAAAINKAAGGKGVTASVVTANDGQHLVFNAVDTGTKGALTVSASDPSLSALTFGAGVTGGLTQQVAAADALVRVDGFERTSSSNTVTDIVPGVVLNLTKAAEGTKVTLGVTADTSGLKGNLTAFAAAYNTANTLLKNSSSYNAETRIASALTGDSLVRGLQQQLRGQVSGSISELKALGLTIDKDGVMSFDGGKFDTAIAADGGAAAEALGKDSKFGSGLTKLLDANVNVNNGTLTLRSDSLNKQIKGFEADLDNLDARMEKLTDRYTAQFTAMETMISKMQGATGSLSSLLAIK
>NZ_CP017307.1|WP_011037104.1|2670706_2671120_+|flagellar-export-chaperone-FliS
MYGSNRQYAEQYRKVGVSTSVTEADPHKLVSLLFAGACQRIRLAQACLAQGDQARKGKAIGEACAIVGHLNGSLDHEAGGEIAGNLSALYDYVIQRLTAANLHNDETALTEALDLLSEIDSAWNSIPLDQRGIAAAS
>NZ_CP017307.1|WP_016945285.1|2671128_2671422_+|hypothetical-protein
MHSVQSLQDEVSEIRIAMSREEFEVMPHMLDVHDLHVQEYCKHADVAQDRDAVQALQAMQQELVRMMRERQRKLLELIRAQRTSATASRAYARVGRI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017307_1	1.20\|624272\|25\|NZ_CP017307\|CRISPRCasFinder	624272-624296	25	NZ_CP017307.1	624416-624440	1	0.96
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_CP017307.1	624512-624536	2	0.92
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_CP017307.1	624800-624824	2	0.92
NZ_CP017307_1	1.19\|624224\|25\|NZ_CP017307\|CRISPRCasFinder	624224-624248	25	NZ_CP017307.1	624368-624392	2	0.92
NZ_CP017307_1	1.20\|624272\|25\|NZ_CP017307\|CRISPRCasFinder	624272-624296	25	NZ_CP017307.1	624992-625016	2	0.92

1. spacer 1.20|624272|25|NZ_CP017307|CRISPRCasFinder matches to position: 624416-624440, mismatch: 1, identity: 0.96

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcacgcaagggcagcgac	Protospacer
*********************.***

2. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to position: 624512-624536, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggcgacagttcg	Protospacer
******.******** *********

3. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to position: 624800-624824, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggggaaagttcg	Protospacer
******.*********** ******

4. spacer 1.19|624224|25|NZ_CP017307|CRISPRCasFinder matches to position: 624368-624392, mismatch: 2, identity: 0.92

gcagacctcgggtagcgagagttcg	CRISPR spacer
gcagacctccggtggcgagagttcg	Protospacer
********* ***.***********

5. spacer 1.20|624272|25|NZ_CP017307|CRISPRCasFinder matches to position: 624992-625016, mismatch: 2, identity: 0.92

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcgcgtaagggcagtgac	Protospacer
*********.**.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017307_1	1.1\|623360\|25\|NZ_CP017307\|CRISPRCasFinder	623360-623384	25	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	51121-51145	3	0.88
NZ_CP017307_1	1.2\|623408\|25\|NZ_CP017307\|CRISPRCasFinder	623408-623432	25	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	250941-250965	3	0.88
NZ_CP017307_1	1.2\|623408\|25\|NZ_CP017307\|CRISPRCasFinder	623408-623432	25	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	460308-460332	3	0.88
NZ_CP017307_1	1.2\|623408\|25\|NZ_CP017307\|CRISPRCasFinder	623408-623432	25	NZ_CP023450	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence	132960-132984	3	0.88
NZ_CP017307_1	1.2\|623408\|25\|NZ_CP017307\|CRISPRCasFinder	623408-623432	25	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	175194-175218	3	0.88
NZ_CP017307_1	1.2\|623408\|25\|NZ_CP017307\|CRISPRCasFinder	623408-623432	25	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	41928-41952	3	0.88
NZ_CP017307_1	1.2\|623408\|25\|NZ_CP017307\|CRISPRCasFinder	623408-623432	25	NZ_CP041018	Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence	158454-158478	3	0.88
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	NZ_CP010990	Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence	69855-69879	3	0.88
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	16607-16631	3	0.88
NZ_CP017307_1	1.8\|623696\|25\|NZ_CP017307\|CRISPRCasFinder	623696-623720	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	378085-378109	3	0.88
NZ_CP017307_1	1.8\|623696\|25\|NZ_CP017307\|CRISPRCasFinder	623696-623720	25	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	143684-143708	3	0.88
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	243232-243256	3	0.88
NZ_CP017307_1	1.14\|623984\|25\|NZ_CP017307\|CRISPRCasFinder	623984-624008	25	NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	152062-152086	3	0.88
NZ_CP017307_1	1.14\|623984\|25\|NZ_CP017307\|CRISPRCasFinder	623984-624008	25	NZ_CP026329	Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence	107106-107130	3	0.88
NZ_CP017307_1	1.14\|623984\|25\|NZ_CP017307\|CRISPRCasFinder	623984-624008	25	NZ_CP005987	Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence	163970-163994	3	0.88
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	27409-27433	3	0.88
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	209397-209421	3	0.88
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	11418-11442	3	0.88
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	65195-65219	3	0.88
NZ_CP017307_1	1.21\|624320\|25\|NZ_CP017307\|CRISPRCasFinder	624320-624344	25	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	50549-50573	3	0.88
NZ_CP017307_1	1.1\|623360\|25\|NZ_CP017307\|CRISPRCasFinder	623360-623384	25	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	859763-859787	4	0.84
NZ_CP017307_1	1.1\|623360\|25\|NZ_CP017307\|CRISPRCasFinder	623360-623384	25	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	461680-461704	4	0.84
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	NZ_CP046256	Sphingobium sp. CAP-1 plasmid p3, complete sequence	125194-125218	4	0.84
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	NZ_CP022748	Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence	107885-107909	4	0.84
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	59811-59835	4	0.84
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	MN204501	Gordonia phage Chikenjars, complete genome	29380-29404	4	0.84
NZ_CP017307_1	1.3\|623456\|25\|NZ_CP017307\|CRISPRCasFinder	623456-623480	25	NC_048793	Gordonia phage Kenosha, complete genome	29930-29954	4	0.84
NZ_CP017307_1	1.5\|623552\|25\|NZ_CP017307\|CRISPRCasFinder	623552-623576	25	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	351573-351597	4	0.84
NZ_CP017307_1	1.5\|623552\|25\|NZ_CP017307\|CRISPRCasFinder	623552-623576	25	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	52264-52288	4	0.84
NZ_CP017307_1	1.6\|623600\|25\|NZ_CP017307\|CRISPRCasFinder	623600-623624	25	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	395981-396005	4	0.84
NZ_CP017307_1	1.9\|623744\|25\|NZ_CP017307\|CRISPRCasFinder	623744-623768	25	NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	94006-94030	4	0.84
NZ_CP017307_1	1.9\|623744\|25\|NZ_CP017307\|CRISPRCasFinder	623744-623768	25	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	37310-37334	4	0.84
NZ_CP017307_1	1.9\|623744\|25\|NZ_CP017307\|CRISPRCasFinder	623744-623768	25	NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	33091-33115	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	68382-68406	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	186792-186816	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	315946-315970	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	73358-73382	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	41925-41949	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1577504-1577528	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	68399-68423	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP045095	Streptomyces sp. GY16 plasmid unnamed1, complete sequence	1473-1497	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	135413-135437	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1505773-1505797	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	70068-70092	4	0.84
NZ_CP017307_1	1.13\|623936\|25\|NZ_CP017307\|CRISPRCasFinder	623936-623960	25	MN062720	Microbacterium phage FuzzBuster, complete genome	23698-23722	4	0.84
NZ_CP017307_1	1.15\|624032\|25\|NZ_CP017307\|CRISPRCasFinder	624032-624056	25	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	69011-69035	4	0.84
NZ_CP017307_1	1.15\|624032\|25\|NZ_CP017307\|CRISPRCasFinder	624032-624056	25	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	911990-912014	4	0.84
NZ_CP017307_1	1.17\|624128\|25\|NZ_CP017307\|CRISPRCasFinder	624128-624152	25	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	156372-156396	4	0.84
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5969600-5969624	4	0.84
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1420670-1420694	4	0.84
NZ_CP017307_1	1.18\|624176\|25\|NZ_CP017307\|CRISPRCasFinder	624176-624200	25	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	152689-152713	4	0.84
NZ_CP017307_1	1.21\|624320\|25\|NZ_CP017307\|CRISPRCasFinder	624320-624344	25	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	118257-118281	4	0.84
NZ_CP017307_1	1.21\|624320\|25\|NZ_CP017307\|CRISPRCasFinder	624320-624344	25	NZ_CP021815	Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence	49071-49095	4	0.84
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	694675-694699	5	0.8
NZ_CP017307_1	1.11\|623840\|25\|NZ_CP017307\|CRISPRCasFinder	623840-623864	25	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	123372-123396	5	0.8
NZ_CP017307_1	1.14\|623984\|25\|NZ_CP017307\|CRISPRCasFinder	623984-624008	25	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	281685-281709	5	0.8
NZ_CP017307_1	1.14\|623984\|25\|NZ_CP017307\|CRISPRCasFinder	623984-624008	25	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	426616-426640	5	0.8
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	40969-40993	5	0.8
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	38468-38492	5	0.8
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	16093-16117	5	0.8
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	37490-37514	5	0.8
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	21314-21338	5	0.8
NZ_CP017307_1	1.16\|624080\|25\|NZ_CP017307\|CRISPRCasFinder	624080-624104	25	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	54715-54739	5	0.8
NZ_CP017307_1	1.21\|624320\|25\|NZ_CP017307\|CRISPRCasFinder	624320-624344	25	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	297223-297247	5	0.8

1. spacer 1.1|623360|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 3, identity: 0.88

gctcactggcgccgatcagagtcag	CRISPR spacer
acacacgggcgccgatcagagtcag	Protospacer
.* *** ******************

2. spacer 1.2|623408|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

3. spacer 1.2|623408|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

4. spacer 1.2|623408|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP023450 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

5. spacer 1.2|623408|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

6. spacer 1.2|623408|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

7. spacer 1.2|623408|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP041018 (Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

8. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatccaacggcatc	Protospacer
****************.**.***.*

9. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcttggccggatccgccagcagc	Protospacer
**** ************ ***** *

10. spacer 1.8|623696|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

11. spacer 1.8|623696|25|NZ_CP017307|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

12. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 3, identity: 0.88

gcagacggcgcaggacggcagcgac	CRISPR spacer
ggagacggtgcaggacggcagctac	Protospacer
* ******.************* **

13. spacer 1.14|623984|25|NZ_CP017307|CRISPRCasFinder matches to NC_015851 (Acidithiobacillus caldus SM-1 megaplasmid, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

14. spacer 1.14|623984|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP026329 (Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

15. spacer 1.14|623984|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP005987 (Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

16. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggctcggacagcact	Protospacer
******** **** **********.

17. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagcgac	Protospacer
******** *************. *

18. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

19. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

20. spacer 1.21|624320|25|NZ_CP017307|CRISPRCasFinder matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cccgaccgccggtgcggacagccgc	Protospacer
*.********************  *

21. spacer 1.1|623360|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

22. spacer 1.1|623360|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

23. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP046256 (Sphingobium sp. CAP-1 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

24. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP022748 (Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

25. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

26. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to MN204501 (Gordonia phage Chikenjars, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcaggatccaacagcacc	Protospacer
  ******* ******.********

27. spacer 1.3|623456|25|NZ_CP017307|CRISPRCasFinder matches to NC_048793 (Gordonia phage Kenosha, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcgggatccaacagcacc	Protospacer
  ******* ******.********

28. spacer 1.5|623552|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

29. spacer 1.5|623552|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

30. spacer 1.6|623600|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.84

ggaaaccgccggtgcagacagctcg	CRISPR spacer
cagaaccgccggtgcagacaggtcg	Protospacer
 ..****************** ***

31. spacer 1.9|623744|25|NZ_CP017307|CRISPRCasFinder matches to NC_008537 (Arthrobacter sp. FB24 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

32. spacer 1.9|623744|25|NZ_CP017307|CRISPRCasFinder matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

33. spacer 1.9|623744|25|NZ_CP017307|CRISPRCasFinder matches to NC_008539 (Arthrobacter sp. FB24 plasmid 3, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

34. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

35. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgccggacggcagcgcc	Protospacer
  ********* *********** *

36. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

37. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcaggcggcgcaggacggcaggatc	Protospacer
****.**************** . *

38. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcagacggcccagcacggcagcgga	Protospacer
********* *** *********.

39. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

40. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagccggcgcaggacggcatcgac	Protospacer
  ** *************** ****

41. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP045095 (Streptomyces sp. GY16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gaggacggcgcaggacgccagcgag	Protospacer
* .************** ******

42. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

43. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

44. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

45. spacer 1.13|623936|25|NZ_CP017307|CRISPRCasFinder matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 4, identity: 0.84

gcagacatccggcaacgacagctcg	CRISPR spacer
cgagacatccggcatcgacaggtcg	Protospacer
  ************ ****** ***

46. spacer 1.15|624032|25|NZ_CP017307|CRISPRCasFinder matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 4, identity: 0.84

atccaccgctggtgcggacagcacg	CRISPR spacer
ccccgccgctggtgcggacatcacg	Protospacer
 .**.*************** ****

47. spacer 1.15|624032|25|NZ_CP017307|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.84

atccaccgctggtgcggacagcacg	CRISPR spacer
cgccaccgctggggcggacagcccg	Protospacer
  ********** ********* **

48. spacer 1.17|624128|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

ccaaaccgcgcgcaagggtagcgac	CRISPR spacer
tgaaaacgcgcgcaagggtagcgtc	Protospacer
. *** ***************** *

49. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
cagcaccgccgacgcggacagcacc	Protospacer
*   *******.*************

50. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagggac	Protospacer
******** ************ . *

51. spacer 1.18|624176|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctccatcgccggcgcggacagcaaa	Protospacer
*** *.*****************

52. spacer 1.21|624320|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ggcgaccgcctgtgcggccagcacc	Protospacer
  ******** ****** *******

53. spacer 1.21|624320|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cacgaccgccggtgcggacagacct	Protospacer
* *******************  *.

54. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgcgacggcgcaggacggcagcaag	Protospacer
   *******************.*

55. spacer 1.11|623840|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgct	Protospacer
  ************** ****** .

56. spacer 1.14|623984|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
aggaaccgcccgtaccggcagcccc	Protospacer
  .*******************  *

57. spacer 1.14|623984|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ggaatccgcccgtaccggcagcgtt	Protospacer
  ** ****************** .

58. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

59. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

60. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

61. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

62. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

63. spacer 1.16|624080|25|NZ_CP017307|CRISPRCasFinder matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

64. spacer 1.21|624320|25|NZ_CP017307|CRISPRCasFinder matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 5, identity: 0.8

ctcgaccgccggtgcggacagcacc	CRISPR spacer
aaagaccgccggtgcggacagaact	Protospacer
   ****************** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2451461 : 2556433

Xanthomonas_phage(33.33%)

integrase,protease,transposase

attL 2452984:2453000|attR 2488180:2488196

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100097322.1\|2451461_2454542_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.8e-51	25.2
2452984:2453000	attL	NA	NA	NA	NA
WP_044474912.1\|2454687_2456388_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_080601544.1\|2457412_2458381_+	hypothetical protein	NA	NA	NA	NA
WP_129589028.1\|2458488_2460279_+	hypothetical protein	NA	NA	NA	NA
WP_019238197.1\|2462080_2463961_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_019238198.1\|2464561_2467519_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_057672720.1\|2468689_2469745_+	DNA-binding protein	NA	NA	NA	NA
WP_100097353.1\|2470595_2473787_+	Avirulence protein AvrBs3	NA	NA	NA	NA
WP_157769441.1\|2474269_2474503_+	hypothetical protein	NA	NA	NA	NA
WP_075285681.1\|2475150_2475615_+	hypothetical protein	NA	NA	NA	NA
WP_075285680.1\|2475611_2476337_+	hypothetical protein	NA	NA	NA	NA
WP_005918301.1\|2476426_2476714_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_011037183.1\|2477876_2478386_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_011269772.1\|2478768_2479821_+	chemotaxis protein CheB	NA	NA	NA	NA
WP_075285679.1\|2479959_2480880_+	M14 family metallocarboxypeptidase	NA	NA	NA	NA
WP_075287245.1\|2480948_2482754_-	EAL domain-containing protein	NA	NA	NA	NA
WP_114319347.1\|2483066_2484198_+\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	4.9e-54	44.1
WP_100097351.1\|2484635_2496521_+	hypothetical protein	NA	NA	NA	NA
2488180:2488196	attR	NA	NA	NA	NA
WP_075285678.1\|2496604_2499436_-	S8 family serine peptidase	NA	NA	NA	NA
WP_016945305.1\|2500939_2501536_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_162808730.1\|2501477_2502128_+	alpha/beta fold hydrolase	A0A1L7N183	Ralstonia_phage	4.4e-07	31.6
WP_075285676.1\|2502344_2504309_-	beta-N-acetylglucosaminidase	NA	NA	NA	NA
WP_011269768.1\|2505021_2505795_-	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_075285675.1\|2505924_2507196_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_011037194.1\|2507858_2508275_+	membrane protein	NA	NA	NA	NA
WP_040941293.1\|2508271_2509582_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_011037196.1\|2509797_2510835_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_075285674.1\|2511213_2511909_+	thermonuclease family protein	NA	NA	NA	NA
WP_075285673.1\|2512016_2514107_-	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	1.6e-66	27.8
WP_012438415.1\|2514309_2515185_-	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_011037200.1\|2515495_2515927_+	DUF2946 family protein	NA	NA	NA	NA
WP_014507786.1\|2516444_2516927_+	SCO family protein	NA	NA	NA	NA
WP_012438417.1\|2517017_2517596_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_012438418.1\|2517648_2518857_-	MFS transporter	NA	NA	NA	NA
WP_011037204.1\|2519099_2519516_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012438420.1\|2519761_2520016_-	hypothetical protein	NA	NA	NA	NA
WP_162808615.1\|2520012_2521350_-	TFIIB-type zinc ribbon-containing protein	NA	NA	NA	NA
WP_011037207.1\|2521365_2522508_-	SPFH domain-containing protein	NA	NA	NA	NA
WP_016945311.1\|2522706_2522982_-	hypothetical protein	NA	NA	NA	NA
WP_011037208.1\|2523113_2523539_-	DedA family protein	NA	NA	NA	NA
WP_012438425.1\|2523831_2525880_+	TonB-dependent receptor	NA	NA	NA	NA
WP_016945312.1\|2526132_2528241_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	27.9
WP_012438427.1\|2528594_2528903_+	hypothetical protein	NA	NA	NA	NA
WP_087942079.1\|2528971_2529770_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012438430.1\|2530000_2531392_-	alginate export family protein	NA	NA	NA	NA
WP_050911475.1\|2531398_2532289_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_050911474.1\|2532586_2532895_-	XapX domain-containing protein	NA	NA	NA	NA
WP_043890335.1\|2534525_2536634_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.3e-11	51.2
WP_012438434.1\|2537158_2537527_-	response regulator	NA	NA	NA	NA
WP_029217096.1\|2537610_2538927_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_012438436.1\|2538999_2539284_+	hypothetical protein	NA	NA	NA	NA
WP_012438437.1\|2539330_2540032_-	response regulator transcription factor	NA	NA	NA	NA
WP_016944917.1\|2540019_2541723_-	ATPase	NA	NA	NA	NA
WP_012438442.1\|2543766_2544618_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_014507805.1\|2544754_2545063_-	hypothetical protein	NA	NA	NA	NA
WP_075285672.1\|2545421_2546003_-	DUF3693 domain-containing protein	A0A077JCZ5	Xanthomonas_phage	1.8e-52	82.8
WP_100097350.1\|2546403_2547444_+	inovirus-type Gp2 protein	A0A077JDC0	Xanthomonas_phage	2.0e-198	97.7
WP_100097349.1\|2547440_2547737_+	DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	1.1e-45	90.8
WP_157769269.1\|2547952_2548090_+	hypothetical protein	NA	NA	NA	NA
WP_162808616.1\|2548217_2549408_+	hypothetical protein	NA	NA	NA	NA
WP_100097327.1\|2549404_2549680_+	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_100097347.1\|2549676_2550756_+	Zonular occludens toxin	E5F074	Ralstonia_phage	7.3e-31	31.5
WP_100101048.1\|2550766_2551009_-	hypothetical protein	NA	NA	NA	NA
WP_100097345.1\|2551047_2551431_-	hypothetical protein	A0A077JDD0	Xanthomonas_phage	4.0e-48	73.2
WP_114319348.1\|2551608_2551974_+	hypothetical protein	A0A077JDD0	Xanthomonas_phage	7.9e-22	52.1
WP_162808731.1\|2552014_2553073_-	Zonular occludens toxin	E5F074	Ralstonia_phage	2.5e-28	31.0
WP_100097327.1\|2553090_2553366_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_162808617.1\|2553362_2554556_-	hypothetical protein	NA	NA	NA	NA
WP_157769269.1\|2554683_2554821_-	hypothetical protein	NA	NA	NA	NA
WP_100097342.1\|2555036_2555330_-	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	1.5e-26	65.6
WP_100097343.1\|2555326_2556433_-	replication protein	S0F3I3	Stenotrophomonas_phage	3.1e-154	70.9

DBSCAN-SWA_2

2689856 : 2735386

Leptospira_phage(60.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942069.1\|2689856_2690988_+\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_016945281.1\|2691164_2691536_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_011037092.1\|2691549_2693271_+	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_075272170.1\|2693260_2694271_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_011037090.1\|2694267_2694888_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_012438339.1\|2694884_2696261_+	flagellar protein export ATPase FliI	NA	NA	NA	NA
WP_011037088.1\|2696264_2696720_+	flagellar export protein FliJ	NA	NA	NA	NA
WP_075285705.1\|2696716_2697997_+	flagellar protein	NA	NA	NA	NA
WP_011037086.1\|2698187_2698706_+	flagellar biosynthesis protein	NA	NA	NA	NA
WP_011037085.1\|2698718_2699732_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_075285706.1\|2699728_2700067_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_012438337.1\|2700063_2700471_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA
WP_011037082.1\|2700472_2701315_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_011037081.1\|2702421_2702691_+	flagellar biosynthesis	NA	NA	NA	NA
WP_011037080.1\|2702703_2703495_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA
WP_075285707.1\|2703599_2706590_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_075285708.1\|2709734_2711825_+	bifunctional diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	2.3e-20	35.7
WP_075285709.1\|2712265_2713396_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
WP_011037075.1\|2713392_2715486_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_011037074.1\|2716340_2718008_+	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
WP_010374294.1\|2717994_2718879_+	MinD/ParA family protein	NA	NA	NA	NA
WP_011037072.1\|2718875_2719643_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_014507662.1\|2719666_2720059_+	chemotaxis protein CheY	NA	NA	NA	NA
WP_012438328.1\|2720058_2720685_+	chemotaxis protein	NA	NA	NA	NA
WP_012438327.1\|2720687_2722343_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_075286544.1\|2722568_2722964_-	NERD domain-containing protein	NA	NA	NA	NA
WP_087942080.1\|2723176_2724321_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-88	58.8
WP_162808515.1\|2724381_2724807_-	hypothetical protein	NA	NA	NA	NA
WP_075272173.1\|2724811_2725534_-	hypothetical protein	NA	NA	NA	NA
WP_011037067.1\|2725614_2726232_-	hypothetical protein	NA	NA	NA	NA
WP_011269786.1\|2726754_2728266_-	hypothetical protein	NA	NA	NA	NA
WP_161963385.1\|2728238_2728619_-	hypothetical protein	NA	NA	NA	NA
WP_012438322.1\|2728954_2729107_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_162808733.1\|2729241_2729718_-	hypothetical protein	NA	NA	NA	NA
WP_087942069.1\|2730054_2731187_-\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_075286263.1\|2731622_2732321_+\|transposase	transposase	NA	NA	NA	NA
WP_012437264.1\|2732864_2733746_+	hypothetical protein	NA	NA	NA	NA
WP_011038664.1\|2733910_2734321_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_087942065.1\|2734277_2735386_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.9

DBSCAN-SWA_3

2939985 : 2950461

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011036903.1\|2939985_2941950_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-12	43.6
WP_011036902.1\|2943164_2943377_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	1.5e-12	65.5
WP_012438559.1\|2943518_2946167_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.4e-83	39.8
WP_011036900.1\|2946268_2946757_-	recombination regulator RecX	NA	NA	NA	NA
WP_011036899.1\|2946872_2947904_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.6e-112	61.3
WP_011269877.1\|2948076_2948718_-	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_011036897.1\|2948784_2950461_-	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	9.3e-41	27.7

DBSCAN-SWA_4

3446964 : 3510189

Leptospira_phage(57.14%)

integrase,transposase

attL 3438841:3438856|attR 3522048:3522063

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3438841:3438856	attL	NA	NA	NA	NA
WP_012438063.1\|3446964_3447945_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.7e-98	60.7
WP_075285884.1\|3448679_3448907_+\|transposase	transposase	NA	NA	NA	NA
WP_029629011.1\|3449453_3452219_-	serine kinase	NA	NA	NA	NA
WP_011036412.1\|3453228_3453963_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_011036411.1\|3454112_3454739_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011036410.1\|3454821_3455946_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_011036409.1\|3455957_3456749_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_075286575.1\|3456745_3457993_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_075285885.1\|3458028_3459483_-	hypothetical protein	NA	NA	NA	NA
WP_011036405.1\|3460799_3461330_-	VOC family protein	NA	NA	NA	NA
WP_075285887.1\|3462796_3464536_+	SIR2 family protein	NA	NA	NA	NA
WP_075285888.1\|3464535_3465984_+	nuclease PIN	NA	NA	NA	NA
WP_075285889.1\|3466213_3466579_+	hypothetical protein	NA	NA	NA	NA
WP_075285890.1\|3466623_3468216_-	MobA/MobL family protein	NA	NA	NA	NA
WP_046346036.1\|3468475_3468781_+	hypothetical protein	NA	NA	NA	NA
WP_046343958.1\|3468876_3469869_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_075285891.1\|3469990_3470908_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_075285892.1\|3471015_3472179_+	TDT family transporter	NA	NA	NA	NA
WP_046343962.1\|3472180_3472783_-	uracil-DNA glycosylase	NA	NA	NA	NA
WP_075285893.1\|3472878_3475473_-	hypothetical protein	NA	NA	NA	NA
WP_075285894.1\|3475508_3476150_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_075285895.1\|3476344_3476545_-	hypothetical protein	NA	NA	NA	NA
WP_075285896.1\|3476614_3477094_-	DNA repair protein RadC	NA	NA	NA	NA
WP_162808655.1\|3477491_3477716_-	hypothetical protein	NA	NA	NA	NA
WP_100097370.1\|3478171_3479303_+\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	1.9e-53	43.7
WP_162808656.1\|3479304_3479463_-	hypothetical protein	NA	NA	NA	NA
WP_075285902.1\|3480013_3480757_-	hypothetical protein	NA	NA	NA	NA
WP_075285903.1\|3481412_3482804_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_075285904.1\|3484137_3484809_-	hypothetical protein	NA	NA	NA	NA
WP_081377977.1\|3485196_3486006_-	OBAP family protein	NA	NA	NA	NA
WP_075285905.1\|3486046_3488674_-	DNA ligase D	A0A068CDF3	Rhizobium_phage	2.4e-43	35.3
WP_075285906.1\|3488687_3488864_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_075285907.1\|3490279_3490924_+	hypothetical protein	NA	NA	NA	NA
WP_075285908.1\|3491142_3491499_+	hypothetical protein	NA	NA	NA	NA
WP_075285909.1\|3491502_3491949_-	hypothetical protein	NA	NA	NA	NA
WP_075285910.1\|3492073_3492463_-	hypothetical protein	NA	NA	NA	NA
WP_075286578.1\|3492462_3493323_-	hypothetical protein	NA	NA	NA	NA
WP_075285923.1\|3493434_3493812_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157769446.1\|3494418_3494721_-	hypothetical protein	NA	NA	NA	NA
WP_157769447.1\|3494717_3498218_-	wall-associated protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.5e-08	35.1
WP_114319368.1\|3498262_3500521_-	RHS repeat protein	NA	NA	NA	NA
WP_100097370.1\|3500799_3501931_+\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	1.9e-53	43.7
WP_075285952.1\|3503119_3503428_+	hypothetical protein	NA	NA	NA	NA
WP_075285983.1\|3503414_3504908_+	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	3.1e-80	36.4
WP_075285992.1\|3504894_3506064_+	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.9e-72	46.3
WP_114319354.1\|3506066_3506711_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_157769448.1\|3506760_3507060_+	hypothetical protein	NA	NA	NA	NA
WP_157769449.1\|3507056_3507269_+	hypothetical protein	NA	NA	NA	NA
WP_075285998.1\|3507467_3508283_-	nucleotide-binding protein	NA	NA	NA	NA
WP_075286002.1\|3508275_3510189_-\|integrase	integrase	NA	NA	NA	NA
3522048:3522063	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3691654 : 3749278

Leptospira_phage(12.5%)

tail,protease,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942069.1\|3691654_3692787_-\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_011269959.1\|3697132_3698023_-	Mrr restriction system protein	NA	NA	NA	NA
WP_011269960.1\|3698063_3698372_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_019237868.1\|3698377_3698641_-	hypothetical protein	NA	NA	NA	NA
WP_043877930.1\|3698736_3699264_-	hypothetical protein	NA	NA	NA	NA
WP_162808662.1\|3699412_3699964_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_075286060.1\|3700351_3701215_+	hypothetical protein	NA	NA	NA	NA
WP_162808663.1\|3701240_3702566_+	hemolysin	NA	NA	NA	NA
WP_162808739.1\|3702763_3703519_-	hypothetical protein	NA	NA	NA	NA
WP_075286062.1\|3703698_3706371_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.3e-73	27.0
WP_011036253.1\|3706538_3707831_-	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	6.4e-74	38.0
WP_162808740.1\|3708213_3708411_-	DUF2065 family protein	NA	NA	NA	NA
WP_075286064.1\|3708605_3709469_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_014506921.1\|3709468_3710611_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_011036249.1\|3711576_3711963_-	response regulator	W8CYM9	Bacillus_phage	7.4e-10	31.8
WP_011036248.1\|3712279_3713170_-	DnaJ domain-containing protein	F2Y2Y5	Organic_Lake_phycodnavirus	1.4e-06	45.2
WP_011036247.1\|3713312_3713789_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_011036246.1\|3713949_3714432_+	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	4.9e-27	39.5
WP_011036245.1\|3714474_3715035_+	bacterioferritin	NA	NA	NA	NA
WP_050911667.1\|3715670_3718094_-	penicillin-binding protein 1C	NA	NA	NA	NA
WP_011036243.1\|3718198_3719038_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012439027.1\|3719107_3720055_-	glycerophosphodiester phosphodiesterase family protein	A0A0S2MYI4	Enterococcus_phage	5.8e-08	36.8
WP_019237893.1\|3720158_3723251_-	TonB-dependent receptor	NA	NA	NA	NA
WP_075286065.1\|3724022_3724490_+	hypothetical protein	NA	NA	NA	NA
WP_075286066.1\|3724844_3729782_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_075286591.1\|3730672_3731623_-	nucleoside hydrolase	NA	NA	NA	NA
WP_011036237.1\|3731747_3733964_-	TonB-dependent receptor	NA	NA	NA	NA
WP_075286067.1\|3734218_3735418_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_011036235.1\|3735511_3735829_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_043877819.1\|3735825_3736068_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_075286068.1\|3736154_3738749_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_075286069.1\|3738933_3740088_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_012439038.1\|3740163_3741060_-	methylisocitrate lyase	NA	NA	NA	NA
WP_011036230.1\|3741205_3742807_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_014506900.1\|3742903_3743233_-	hypothetical protein	NA	NA	NA	NA
WP_011036228.1\|3743440_3743665_-	hypothetical protein	NA	NA	NA	NA
WP_139145255.1\|3744123_3744342_+	hypothetical protein	NA	NA	NA	NA
WP_016944826.1\|3744384_3744669_+	hypothetical protein	NA	NA	NA	NA
WP_012439043.1\|3744722_3745010_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_016944825.1\|3745234_3745399_+	hypothetical protein	NA	NA	NA	NA
WP_016944824.1\|3745621_3745858_+	hypothetical protein	NA	NA	NA	NA
WP_075286070.1\|3745850_3746285_+	hypothetical protein	NA	NA	NA	NA
WP_012439047.1\|3746298_3746766_+	hypothetical protein	NA	NA	NA	NA
WP_012439049.1\|3747220_3748273_+\|head	head decoration protein	NA	NA	NA	NA
WP_146011549.1\|3748481_3748667_+	hypothetical protein	NA	NA	NA	NA
WP_012439051.1\|3748669_3749278_+\|tail	tail assembly protein	W0LI27	Edwardsiella_phage	8.0e-51	53.1

DBSCAN-SWA_6

4200169 : 4210030

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040941821.1\|4200169_4201516_+	phosphohexose mutase	A0A127AWJ1	Bacillus_phage	1.6e-30	26.2
WP_011035868.1\|4201561_4202965_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	29.9
WP_075286171.1\|4203086_4203995_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.5e-29	33.9
WP_011035866.1\|4203991_4204549_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-43	49.4
WP_075286172.1\|4204545_4205433_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.2e-94	57.8
WP_012439278.1\|4205496_4206552_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.0e-82	47.6
WP_011035863.1\|4206780_4207527_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_019237972.1\|4207526_4208471_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011035861.1\|4208530_4208878_+	WxcH protein	NA	NA	NA	NA
WP_019237974.1\|4208926_4210030_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.1e-45	33.2

DBSCAN-SWA_7

4725350 : 4807859

Leptospira_phage(28.57%)

integrase,transposase

attL 4714702:4714718|attR 4778443:4778459

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4714702:4714718	attL	NA	NA	NA	NA
WP_075286325.1\|4725350_4726439_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_075286326.1\|4726693_4728016_+	fibronectin-binding protein (FBP)	NA	NA	NA	NA
WP_075286327.1\|4728012_4730133_+	ATP-binding protein	NA	NA	NA	NA
WP_075286328.1\|4730236_4731175_-	hypothetical protein	NA	NA	NA	NA
WP_100097384.1\|4731391_4731631_-	hypothetical protein	NA	NA	NA	NA
WP_157769272.1\|4732108_4733248_+	AAA family ATPase	NA	NA	NA	NA
WP_114319358.1\|4733471_4736354_+	avirulence protein	NA	NA	NA	NA
WP_087942069.1\|4736380_4737513_-\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_100097386.1\|4738648_4739686_+	hypothetical protein	NA	NA	NA	NA
WP_014125898.1\|4739673_4740741_-	cointegrate resolution protein T	NA	NA	NA	NA
WP_040942478.1\|4741908_4744869_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_044474917.1\|4746102_4746546_-	hypothetical protein	NA	NA	NA	NA
WP_100097387.1\|4746850_4750705_-	avirulence protein	NA	NA	NA	NA
WP_075286660.1\|4751006_4752206_-	hypothetical protein	NA	NA	NA	NA
WP_075286661.1\|4752287_4753919_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_157769450.1\|4754139_4755132_-	hypothetical protein	NA	NA	NA	NA
WP_075286663.1\|4755369_4758831_-	AAA family ATPase	NA	NA	NA	NA
WP_075286664.1\|4758833_4760075_-	DNA repair exonuclease	NA	NA	NA	NA
WP_075286665.1\|4760443_4764079_-	hypothetical protein	NA	NA	NA	NA
WP_075286666.1\|4764140_4764503_-	hypothetical protein	NA	NA	NA	NA
WP_114319359.1\|4765351_4766776_+	hypothetical protein	NA	NA	NA	NA
WP_157769452.1\|4767014_4767860_+	hypothetical protein	NA	NA	NA	NA
WP_100097274.1\|4768030_4769011_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	2.8e-98	61.0
WP_157769453.1\|4769782_4770502_+	hypothetical protein	NA	NA	NA	NA
WP_114319360.1\|4770494_4772348_+	hypothetical protein	NA	NA	NA	NA
WP_075286647.1\|4772407_4773412_+	AAA family ATPase	NA	NA	NA	NA
WP_100097409.1\|4776659_4778465_+	S8 family peptidase	NA	NA	NA	NA
4778443:4778459	attR	NA	NA	NA	NA
WP_011345684.1\|4778532_4778784_+	hypothetical protein	NA	NA	NA	NA
WP_100097393.1\|4778913_4779711_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_011345686.1\|4779707_4780331_+	hypothetical protein	NA	NA	NA	NA
WP_075286648.1\|4780327_4783639_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	7.2e-29	28.4
WP_011345688.1\|4783742_4784249_+	hypothetical protein	NA	NA	NA	NA
WP_011345689.1\|4784248_4784719_+	hypothetical protein	NA	NA	NA	NA
WP_011345690.1\|4784699_4785191_+	hypothetical protein	NA	NA	NA	NA
WP_011345691.1\|4785187_4786546_+	thiamine biosynthesis protein ThiF	NA	NA	NA	NA
WP_011345692.1\|4786553_4787093_+	hypothetical protein	NA	NA	NA	NA
WP_011345693.1\|4787230_4787713_-	hypothetical protein	NA	NA	NA	NA
WP_041854960.1\|4788019_4789081_+	hypothetical protein	NA	NA	NA	NA
WP_011345695.1\|4789380_4791483_+	hypothetical protein	NA	NA	NA	NA
WP_042840993.1\|4791950_4792841_-	hypothetical protein	NA	NA	NA	NA
WP_042840992.1\|4792965_4793592_+	hypothetical protein	A0A2H4J137	uncultured_Caudovirales_phage	1.6e-46	49.3
WP_046937630.1\|4793594_4794713_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	1.9e-66	42.0
WP_074038299.1\|4794744_4795038_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_100097370.1\|4795243_4796375_+\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	1.9e-53	43.7
WP_019238220.1\|4796569_4797640_+	acyltransferase	NA	NA	NA	NA
WP_155247748.1\|4798148_4798586_+	hypothetical protein	NA	NA	NA	NA
WP_155247747.1\|4799780_4800809_-	hypothetical protein	NA	NA	NA	NA
WP_019238215.1\|4801012_4801276_+	hypothetical protein	NA	NA	NA	NA
WP_019238214.1\|4801484_4801754_+	hypothetical protein	NA	NA	NA	NA
WP_019238213.1\|4801877_4802609_+	hypothetical protein	NA	NA	NA	NA
WP_044474909.1\|4802601_4804458_+	hypothetical protein	NA	NA	NA	NA
WP_100097410.1\|4804526_4805516_+	Type II secretory pathway, component ExeA	NA	NA	NA	NA
WP_100097394.1\|4805515_4806826_+	hypothetical protein	NA	NA	NA	NA
WP_100097274.1\|4806878_4807859_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	2.8e-98	61.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017307

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection