CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022438	Streptomyces peucetius subsp. caesius ATCC 27952 chromosome, complete genome	12 crisprs	cas5,cas7,cse2gr11,cas8e,cas3,csa3,DEDDh,WYL,cas4,c2c9_V-U4,DinG	2	12	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022438_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_1

107895-107973

TypeI-E

Consensus_repeat	Method
CTACGCCCCGCGCGAGCGGGGGTGCTCCG	CRISPRCasFinder

1 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP022438_1

>merge|NZ_CP022438|1|107895-107973|CRISPRCasFinder
CTACCCCCTGCGCCAGCGGGGACTCCGCCAGCAGGCTCAACCATGGCCCCGCAGTCCCGCGTCAGCGGGAGTGTTTCGA

>NZ_CP022438|1|1|107895-107973|CRISPRCasFinder
CTACCCCCTGCGCCAGCGGGGACTCCGCC	AGCAGGCTCAACCATGGCCC
CGCAGTCCCGCGTCAGCGGGAGTGTTTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100110879.1\|120497_124151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP022438.1\|WP_100105381.1\|100923_102078_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP022438.1\|WP_100105374.1\|95434_96163_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP022438.1\|WP_100105386.1\|110598_111423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105389.1\|124355_125156_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367510
NZ_CP022438.1\|WP_159026685.1\|112008_112314_+\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|197851
NZ_CP022438.1\|WP_100105390.1\|125213_125990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105377.1\|97100_97913_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP022438.1\|WP_100105387.1\|111610_112159_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378194
NZ_CP022438.1\|WP_100105383.1\|102871_104440_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP022438.1\|WP_100105376.1\|96162_96372_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105380.1\|100132_100927_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP022438.1\|WP_100105378.1\|97909_99460_-\|recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP022438.1\|WP_100105379.1\|99482_100136_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP022438.1\|WP_100105382.1\|102209_102875_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP022438.1\|WP_100105385.1\|109240_110467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367510
NZ_CP022438.1\|WP_100105388.1\|113271_113691_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379733
NZ_CP022438.1\|WP_159026686.1\|112370_112574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105384.1\|104814_107715_-\|CRISPR-associated-endonuclease-Cas3''	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP022438.1\|WP_100110878.1\|113693_120275_-\|type-IV-secretion-protein-Rhs	unknown	unknown	gnl\|CDD\|373061

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100110879.1\|120497_124151_-\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	9.35668e-24
NZ_CP022438.1\|WP_100105381.1\|100923_102078_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.06215e-97
NZ_CP022438.1\|WP_100105374.1\|95434_96163_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	2.37846e-16
NZ_CP022438.1\|WP_100105388.1\|113271_113691_-\|hypothetical-protein	gnl\|CDD\|379733	pfam15588, Imm10, Immunity protein 10. A predicted immunity protein with a mostly all-beta fold and a conserved arginine residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Pput_2613 deaminase domain. The protein is also found in heterogeneous poly-immunity loci.	4.24537e-09
NZ_CP022438.1\|WP_100105389.1\|124355_125156_+\|hypothetical-protein	gnl\|CDD\|367510	pfam03457, HA, Helicase associated domain. This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.	4.37469e-11
NZ_CP022438.1\|WP_159026685.1\|112008_112314_+\|PASTA-domain-containing-protein	gnl\|CDD\|197851	smart00740, PASTA, PASTA domain.	1.17026e-07
NZ_CP022438.1\|WP_100105377.1\|97100_97913_-\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	2.48055e-16
NZ_CP022438.1\|WP_100105387.1\|111610_112159_-\|hypothetical-protein	gnl\|CDD\|378194	pfam09509, Hypoth_Ymh, Protein of unknown function (Hypoth_ymh). This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.	1.7298e-17
NZ_CP022438.1\|WP_100105383.1\|102871_104440_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	4.69598e-66
NZ_CP022438.1\|WP_100110878.1\|113693_120275_-\|type-IV-secretion-protein-Rhs	gnl\|CDD\|373061	pfam14427, Pput2613-deam, Pput_2613-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Pseudomonas Pput_2613. Members of this family are predicted to function as toxins in bacterial polymorphic toxin systems.	2.95012e-18
NZ_CP022438.1\|WP_100105380.1\|100132_100927_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.0707e-34
NZ_CP022438.1\|WP_100105378.1\|97909_99460_-\|recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	3.54416e-09
NZ_CP022438.1\|WP_100105379.1\|99482_100136_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.72699e-44
NZ_CP022438.1\|WP_100105382.1\|102209_102875_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	0.000212776
NZ_CP022438.1\|WP_100105385.1\|109240_110467_+\|hypothetical-protein	gnl\|CDD\|367510	pfam03457, HA, Helicase associated domain. This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.	9.99054e-12
NZ_CP022438.1\|WP_100105384.1\|104814_107715_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.68698e-49

>NZ_CP022438.1|WP_100105384.1|104814_107715_-|CRISPR-associated-endonuclease-Cas3''
MSVLDDGRLAGIDLAPWGKFDVLTGAVYPLLFHQIDAGAAAEALWDRFLSPSQRAQIAGGLGESEPRARQVVAFLAAQHDVGKLIPCFQCDVPAARRRLGEDLLADMGRVVEVSHARASMHVGLGLLEELGFAREGNDSPAVRGAQVLGGHHGRYLQIDVDQGASAARVEALLGGPLWRDLRRRYTRLMWHIFDVEEAPKEFSVEAAVLITGLIMVADRLVSRRRFWLPLANTLSFGAFEHAARVRELAWEAVEKAGLDRITLPRAAFTAVHEGVAGPNALQASVLEQLPGWVRQRGSGIAVVTDATGSGKSVNGLEMARIFNAECGTNGVLWLLPTTATADAAFERLDRYVRAHGPERVPTAVVHSGQWLSDAYPDHTLTDDGGSVIDGPGDPADPQGRGSGPTEETDGDATGGGDGVKPAVPDSWQRGWDRALLAQFTVATVDQAQMAVLPVRFNALRMLGICGKTVVVDEAHTLEPFSQLQLRRLLNWLGSLRCPVVLLSATLPASTSSELIRAYLSGAGHTPRMLRDRSWDPGYPGWVFVDAASATAHRMDEEARDAHAAVQRRRVRISTVPVTYRRLGERGRPTEEGERLAAAEAALAPVLQSGAGCAAVVCATVADAQDTYAFLRHRWQGPAGDLVLLHARREDHRRERTIRWLRRRLGKYGPRPRRLVVVTTSLLDVSLDIDVDLMVSDLASIGRLMQRAGRLGRFTHLWAGLEGRRPPWWDEAEGPTLTVLHPVGSRGATALPPGWGSVEPAVTQHATAHLLTSRAVTTLTLPDDVQDFVEQVHGQGSAFAAETDTMQRLLAGHHARTDRQLHTGAVHLIPPPARVSSLADLHRQHLTTAQAATRLGTMPRRLVPCYRTPQGTWTLDPDGRHPLPDKPRLTPRDVRSILAHSLPVPAAWVTRPHPRTTPPDSWQRHALLAGMILLPTDPDHPNELHRTGHYELRMDAELGLVHRRDQH
>NZ_CP022438.1|WP_100105383.1|102871_104440_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MPSLPSPPSAFSAADHPWIDVRTGHRYDQTGLRALFLTAHTIDDLAIPYPPAASALLRIAIAITARITGLDDPDLTATQWTRLRRQALARGAFDPEAVHTYFDQHHFDVFHPTRPWLQDPRLPDQCTRTEGINRFTPGRPGGNNLAWFSAHHHELATPLPTGQALQYLLIHHFYGPSGTGTPRTAGGTTSRTLSSGPLRATVSFHPLGRTLHETLLAGLPKFLGDEQLLADTCPWEEGHVPDDPAAAPHPVTWPGRLLTGRSRHAVLMVPGDDQQTVTDAYVTWSTQQPRLETTDPYLVYRIDPEKPVDRRRTARRADATRAWWRELEPLVLAPDEHRAQRRPEVFDTLNDLPADVRSTLRVRVHGFDQDGKVNNRQWYTALTPPLWAWTQEHDPERAQRIAECCQAAEDIAVRLTQAADQAWADTTTPRNGSDPAKQRKPKASVWAAKAAAVYWPLAETTFWQLLDDDTPADRVFARQAVTALRQVTRTARARSQQAARAVAIAVKTLHSKDLPPKKSSRR
>NZ_CP022438.1|WP_100105382.1|102209_102875_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTPTPDERRARYDEFVASIHDLCTNPGIRAALAKGRGRPVEQCGFMDRYLTRSTAGRPGRRAHYTIAGLIALAGPAAHTPGVRPDPPHPATPANPPRSTTTTSALAAMPDSPVITTVAPAVDEAVDWVKRPNLGATLAAAVTSCGYSEERTGEQLHVLTRLGDDQVYRRLPSHITRLLGDGLTPNWAVLLSDLIQRPYQRDAVSLRWRDSFYLGLDAPRRT
>NZ_CP022438.1|WP_100105381.1|100923_102078_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MHTPARFLDLHILQPVTPANLNRDENQEPKTILVGNAIRAMVSSQSWKRQNRLGVERDLDEPAARTRLVPVIVADRLRDAGWPDDLATFTSAQIVLSAKDKGLKHNANEQYRTQAMLYLPKDAVDHLVTLCETHRPDLEEALAEHTASTKKKTPTPVLPVKAINAQLTRRTASISLFGRMLAELPNGHVEAAVQMAPAFTVHPSDPQPDFFTTVEDWPQPDDPGSAHLQTAYLTGGLFYRYSTVNITELKRNHTDGTSTLEELIELYVWHFIMSMPRAKATSTAPHTIPDLVHYVVRDSRPISYGAAFEQPVKAAPQGGYTRPARAALADYATTIDRLVGTRRRIDHGHTNFDKPLDMLGTHHECFEDLAVACAASGLAPTPTR
>NZ_CP022438.1|WP_100105380.1|100132_100927_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTGLILRLAGLQQAWGERGVFHHRDTTAFPTRSALIGLFAAAGGRSREDALTPYQQLPGTPSHHGLTFTIRIDTPGTLHHDFHTVGGGYPPEQRLRTADGGRRSEAKSTLVSHRTYLAGAVFTLAVEGPRPLLDHIADALEHPAFGIYLGRRSCPPDTPLVLATHSPDPVGELRDTVPLTLPAPPADDATHVPVTFVYEQPTDSAHASVLPDRESNSEPVDFTPINRRHLPRPLWITPEELRASLYAGPRPIDALATYITQGHP
>NZ_CP022438.1|WP_100105379.1|99482_100136_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTPTLTLLTLNPHHKTVRADLTSAVGLHKTLMRLVPDNLGPTPRAEAGLLFRLETGPAPRLLIQTRHQPDPTRLPRNYATHQMRSLTPMLNALSTGLTVRYRITAAPAASLTAHATPHPTTGKVRGKPTPLTGDDAITWWQRRATAAGLHTLTIDATPVPRRFPRTNRQGPGPNAVLTQFDGLARITDPTQLATALTTGIGRAKSYGAGLLSLTPA
>NZ_CP022438.1|WP_100105378.1|97909_99460_-|recombinase
MNPSPDITALRTTAVRRLLKLAEEHQLTRARITGVADAFGVEARTVDRWIAIARNNNGTYIPAPRPRFELTPAMLDAIARWRGNATAAYRELKADNTPNLPSSATFHRAAARALTPGMRAGLRHGEKARRAYDIAGKRPRHHRNYAWETDHVEASVRVRIDGHIRKPWITFFADCAASTLCGLAITPQRPSREAVLVAIRDAVLIDDHHGPFGGVPDRVRVDGGKEFLCKTVGEAFGVLGTERIELPPFTPEGKPIVEAINGAIKKTLFAGMPGYTHAPTLLGGKPVDPDQPLLHFEAFVAHVRTWVHWWNHEHTLDSLSGRTPAQAWNDDTTPIETIDAAALHTYTLERHGKPLTINNTGVRWRNADYIADWMHGFVGDKVTLRYLPHHDHRVELYDPTSGHHLGPAFMANQATPQQIRDLKRAQRREADRLRAKLKKAEKNRNIRYAAATQPQPPTPLLAMTEDTALEHLRDLDGHDLRDQALPDLLPLPKPADDWTRPLNTPTPEPDNEQDHP
>NZ_CP022438.1|WP_100105377.1|97100_97913_-|ATP-binding-protein
MNQPHTTERRPSQLPPPDRDHYIGLTGAHTMGTQALAATEDRIRKAIKHNAIVAIHGHVGLGKTFAVHTALRRRAPHTTLRLEFRQAPNMSELRGSLWRALDLPGEPPQSADESGQRIKRALEQSPDAVLLLDEVQWLSKTALEYIRDLWGDAERRAAVVLVGSGNTRQKILSCPALHSRVLDWYQFAPLTPAEVLTTIPAYHPMWTGADPDLILYTDDHAGHGSFRNWAKLTVHLTDALEENPNLTLSKDLIRWSFSRLDSTTRFPPSN
>NZ_CP022438.1|WP_100105376.1|96162_96372_-|hypothetical-protein
MAGKPPEGYYRVRSHWRRKPGPSRKKMSGWTIAAIVAGIWLWGQLIGFGETGESPAPAPNPAVSSSAER
>NZ_CP022438.1|WP_100105374.1|95434_96163_-|restriction-endonuclease
MSRRRLRPRMPRGAGEWAAVVALAAVTLLTKTAVAIAVAAQRAWPVLVALAAAGLLCTGWRAWRSARAARMRAQSLARLRITLMQIDAMDDQDFEFALRDLLIRDGWSARRVGQQGDQAADAIGQHPQYGRIVIQAKHTTVGAKVGSHVMYQVKGTAGPVHGADHSVVVTNGTFTRDAKAWGERHQVHWVDRDQLRAWAEHGIPLHNLLRLSPRPTRSRRTFRSRPMSSSGRRQRNARLVRR
>NZ_CP022438.1|WP_100105385.1|109240_110467_+|hypothetical-protein
MITAPNRDSSSEGTHTSHEASGHCTRRTLLPKAAWSTRLRHLGENHPEQRGESQQTSEAQQEVDRVTSVVVNFASPRDAADIAALTRCRVIRPQSLVWLEGYQALVRWRAENGITGLYAVPYDVETKAGTTKAFPLGRWVHQMRKSLRAGELDPHRKDLLDDAGMVWEPGDEAWENKLAALRSYHRAHGHLSPRQDAVWGEGEAMVPIGQHMANLRRKDGLGKDPERAAERAKQLIAVDPDWNCPWPLDWQRHYKVLADLAADEPDGVLPAIEPGVLFEGDDIGRWLQRQKNPGTWAQLSSDQQERLSKLGVQPTEGPSHAPAAARSTKGSGKAQQAFQRGLAALAQWVEREGQRPVPRGHAEEISIDGETEPVVVKLGVWVSNTKARRDKLTQEQLNALRELGMEWA
>NZ_CP022438.1|WP_100105386.1|110598_111423_+|hypothetical-protein
MLTEALLAVAGAGGTALVQAAGTDAWTGLRQRAARLLGRGDTQRERAELERLDRTAQALEEADTTGDAERTRLRQEASWQTRFESLLENLEDSEQQQVATELQALVAEQREFAARQCVVDNTFNGPAALQVGNHNQQENRFHIASYLPAPVGPRLVLHVSNSIPVYDLPDGSQDLGDHFVSVEAVNTGDQPIAITSWGIELPGDRRMFVTRGENWATPLPHVLVPGAPPARFLIRADELRRVEREQRIPYTQMRPYVGLADGTAIHADHSVPLA
>NZ_CP022438.1|WP_100105387.1|111610_112159_-|hypothetical-protein
MRTPWRSLGPSPGPCRPCRAVRRSRCWWDLLTRPRLHPGRTARGCRRCASSSCRTPSRPPTASRSATGSATLSPQTAAETLTTQVKARSGLSSMDATNVYEKVFAARAPVLRWPGDANDRTVSSMQNGLAKYAPGLNMTVRNTATHEAADEMTAQQALERLAALSLLAHWIDECEGPIPTED
>NZ_CP022438.1|WP_159026685.1|112008_112314_+|PASTA-domain-containing-protein
MKHNDDNREQFARDAAEAASADPTSTETAELPDMVGMDLDSAQEIAKVYGFRYFIDEDHSGQDRLQILDNEWTVCTQDPAPGTERVEILVTLHAVKDDETC
>NZ_CP022438.1|WP_159026686.1|112370_112574_-|hypothetical-protein
MPRLRGPNSGPAKELDALAFSYCVRMLAGAPKGFDDVTDRLVLDSIQWCTPALDVAAQTRALRLVQD
>NZ_CP022438.1|WP_100105388.1|113271_113691_-|hypothetical-protein
MATRWPIRKVHAEENVPDSCFIFGMSEDEMGEGRYLIFQSGLREPTPQQQRLGLDSYCILNEEDGQCFGGVEEVVVSEQSLHLSLTEEAASELGVADRSFDLTIEADGGGREVYEGLRRALAWGNPELHPRRVEFRTQG
>NZ_CP022438.1|WP_100110878.1|113693_120275_-|type-IV-secretion-protein-Rhs
MPAGLTPIAAATEPLGRPGVPGPRVSKVIPAPTGAKKARESVAKAKADNAKLAQTARAERAVTWPKPTSHIRELGAKPASTDLVQLRPAAPAKDTKRSAAKTTQGADGSATVEVLDQKAARKAGITGVLFTAAAEVPGAAQVTVDYKPFASALGGNWAGRLGLVSLPACALTTPQKPACRKQTPLPSTNDTIAQTVTAPTTVTAATTGKEAPASASPGGAKTATMTAPTVMALTATSGSSERGDHTATPLSSSATWEAGSSSGSYSWSYPIAVPPAVAGPVPPLSLSYDSGSIDGRTANTNNQGSQVGTGFDLTSSYVERKYGSCDDDGQDGKADLCWKYENATLVLNGQAIELVKDDTSGAWRLKNDDASKVAHKTGADNGDDGDDIVNGTGDGKGEHWVLTKGDGTTYTFGLNKLPGAGTERTNSVWTVPVFGEDSGEPGYSSGSTFAGRAKTQAWRWNLDFVQDVHGNASTYWYTAEGNHYAKNGDKTNLAAYTRGGYLKQIQYGQRADTLFTGVTASKIDFTYAERCTAADCSSLNADTADNWPDVPFDALCTASETDCIATGPAFFTRKRLTGIDTSVWSTAVEPDAFKPVDSYKLTQEFLDGQDIGNSSDQSLTLKSLQRTGKNGTAITLPAVDFTYHMRPNRVDSPSDNIAPVSMPRLNQVVSETGAITTITMSAPECVIGSKMPAAEDNNNLSCFPVYWPINAGDPALDWFHKYNVTAVTVSDPAGNNEALEYSYTYETPGWHYNDDPLTKENERTWSSWRGYQKVTAYTGDSAHPRTKTVKLFMQGMHGDKRKDGTTRTAVVKGIDLDNDPSTTTDNRDLGDANDLDVYAGQLRQQITYNGATAIANTFNSIWFKQTASQQKSYAHTKAYFVRTSRTYSDTYLTAAKKWRTAVTSYTFDDTYGMPTRTENHGDWAKAGDETCTRTWYARNPDAGLTSLVSRTRTVGSACLASGVLITDDQLDLPANSDTPGDVLSDTATVYDTPNATGWIANQTPSLGLPTWTGRAKAYPAPIGTADRHPAVNGGWQTVSHTTYDTATSKLGRPISITNADGKTSTTTYYPAATGPLTSTIITGPALASNGQTHKAYTYFDPARGTITRNFDANLKRTEHTYDALGRITATWLPNRDKSAGYSASVTYAYHLIRNAEPWTSTSTLKADGTTYQTSYAISDSLLRPLQTQTASPLGGRILTDTRYDSRGLAYETYGDIYDNANAPNGTYTRASYAHTPVLNQTTFDAAARPTTSSLLVLGVKKWETTTSYTGDSVASTAVQGGTATRTVTDALGRTAETRTYAGTTPADPQYGQATGTPYTSVTYVYGRDDKPAQITGPDNAKWTYVYDLFGRQVRATDPDSGTRTTTYTALDQTATTTDARGKTLHYSYDELGRKTGLWQTAKTDGNKLAAWTYDTLLKGLPTASTRYVGGVAGEAYTKKVTAYDSLGRATSTELSLPADHPLVVSGAISATTTFGTAYRVDGTISNVKEPAAAGLPAEIVSPKYNSYGLPIELSGTSSYLLGVSYTALGQVQQMTLGTSDAFGIKKAYLTNKFEEGTGRLLQSMVTDQSHPWTLQDLNYTYAPAGNVTSISDPSTLGGTSEADHQCFTYDGQRRLTEAWTPKTNDCSTTGRTAANLDGPAPYWTSYTYNTAGQRTTETQHTTSGNTTRTYCYSDTRTHALTATTTGSCTGAAAQYTYDAGGNTTRRVEKTGSTTSQDLDWNSEGQLSRLTEGTSSTDYLYDADGELLIRRTVGGETILYLGSTEVHATGTKQWANRYYSVGGNTIAVRSNESGIAQLSWLAGDHHGTQSLAVDAGSAQTFSKRYMSPFGANRGTPTGGPWPDDKGFLGKTNDKSTGLTHIGARQYDPAIGQFISVDPLLIPEQHQSLNGYSYANQHPTTTSDPTGLCEDPGNGRCHQSSTTGSGKGPTYDTAFPENPGVDYTPVVDVNLDSGNGRGKDSGACSVLAGNCSRDAMTGPADPGVFWSAVLGLMANIPYTVELFGWPVDGDCRTGGGPGTPGCDYGAQYDQWAAASGVETASGEYLLPGLIAALLSKHPGRGGYKPGAGTIVGPRTNNTHWASVTVQDSGGNHVNAFSLRSGSQTPGERALGFPNNAQASHTEARAARMVGGSATVKITNDGYSNTVPVSSGDTVTIYALRPPCGQCQGSMSRAAEETGTTFVYIWGKGNSWSSEG
>NZ_CP022438.1|WP_100110879.1|120497_124151_-|hypothetical-protein
MPALPAAVAAPVVTPAATAAVSAVSDDQKALAEAAETGERVEVAGERTERETVFANPDGVTFTLEKSITPVRVAAPEGGWVAPDATLVRRSDGSVGPKAAAVDLAFSAGGDGKDLVRIADDGQAVALGWPGELPPPRLEGERAVYPNVLPDVDLIMTATVEGFRQVLEVKTPEAAANPALRTLDFALGTDNLRMERGAGGGVDALDGNGQVVFRSPAARMWDSAGDAAQPADGVNTQVAGVRPLGESAAESDPMPAGPVEEGDPLAGPGAGDESAVLDLEVSKDTVTVTPDAEMLSGTAADAFPLYIDPSVELNESERTVLSSDGDVFYNFSGGDTGMSVGKCGTGVVNGVAYYCGSGYVNRMYFEFAPGNLKGKHVLDATFRVTETWSFACEARWVDLERTNNISSASKWPGPAKLDQMGDRNVSAGRNTLCDPSQPRAPIEFNDYPAEPDENLTPTVRAFADGKFARLTLMLMAKDESDTVAWKRFDDDAVLSVDYVGKPALPSNIGLVTGTNTQTCRTTEATALTVTDPTPAITATPQTAAGGEAGAQLRAVMDTEKKSGTSWTNLADIERPTSGYVGDNVRVTVSTPTLEENALYRYRAWTRSYYGGGYLSGPSNASTTGWCYFKVDSTAPKAPTITFNGPYTQCATTCDPRGGVGIEGKFTLGPAAGDVNTAYRYKLSTNNTWSGWISGATVQISVTPTTSGTILLSAEAKDTVGDGAETTVQFNVKEGNGPLGSWDFDTTDATTGAVIDTSTTNSALRDDATLYGGATLTDRGRRGQLTGTDTDRGLSLNGTTAYAATSGPVIDTRASYAVAAWVHMDQPTGNHTALGQDGVNRSPFLLGYEHSLKKWTFRAVDSDAPADGTWSYQRVASQNNAVSGVWTHLVGTYDAAAKTLSLYVNGQLQGTTAYTTAWNATGPLQIGRVKWSGSYVTYFPGSIDEVAIWQQAATTAGDQFVKHAELKDANGKPHTELVASYRPAGAQGTSLADTSGYGRPLTLAAGASLNGEELVLDGTSGAGTAAGPLVDDSGSFTVTTEALVDSAKMLTKTDGYKAQILGQRTATGSSWSLWFEKTKTRDEVVRDEYGDPVFDENGEFQYRKVPVGRWHFGRLTADGSGVSVSSIEDPLADDEVRLTGVFNAQAGTISLYLTAEQQNHALAYTAAVGSGEFAVGKGYLNSVWGNYLPGRISDIRLWSGALADGQHVADVLGTNSTT
>NZ_CP022438.1|WP_100105389.1|124355_125156_+|hypothetical-protein
MRTHARTTEHQTQPLRRLRTVSVNELLSRHRSHLLKRFPQRTFLEAEFIGPGHRVATSAIRANPIQLHRATIATNFEHEAHHFRPLEADGAAAGLSAKRRRELDDIDPAWCPVWPVAWQHCFHLARTHVADGGTLVEDSGLLIIQGEDIGRWVRSQRTEWDALLPVQQWLLAESLGLGPLEEEKPAADRTEAVPRRSRAQMWAANLAAARQYAQREGHLNVPRSHIETLDGEQQALGVFIANSRARRASLAPERIEELTAIGMRWS
>NZ_CP022438.1|WP_100105390.1|125213_125990_+|hypothetical-protein
MRRRPHLAQAMLDGYDGWHMVNPLVVRRHELIVAFGGQALTAEDVFTTTAESPFHTYRPTLGGAVASSAQEQIADIIWRAAWEELLREETLPKEDLDATNAVIERWAATHAALAQYLRDNPAERDIRMVAATFMIGDLKLEIAQACARADVSGEELAAHLQPENVVGFFTRLPFTGRVLQVTQTRLRNPSDKWVNHDLNDLYFLACSAAYADHVVAEKKTGHLLNVAGRTLPAQRASVHLNLRSLVRDTQVSGSSQGR

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Crispr_ID: NZ_CP022438_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_2

108150-108361

TypeI-E

Consensus_repeat	Method
CTACGCCCCGCGCGAGCGGGGGTGCTCCG	CRISPRCasFinder

3 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP022438_2

>merge|NZ_CP022438|2|108150-108361|CRISPRCasFinder
CTACGCCCCGCGCGAGCGGGGGTGCTCCGTTCGCCGCGGACCACGGCCCCGTCGTCTACACTACGCCCCGCGCGAGCGGGGGTGCTCCGTCCACCGCGAGACGACGGCCGCAGCCGCACGCCTACGCCCCGCGCAAGCGGGGGTGCTCCGGTGCGGCAGTGCAGGTCACTTTCGACGCCGATCTACGCCCCGCGCGAGCGGGGGTGCTCCGG

>NZ_CP022438|2|2|108150-108361|CRISPRCasFinder
CTACGCCCCGCGCGAGCGGGGGTGCTCCG	TTCGCCGCGGACCACGGCCCCGTCGTCTACA
CTACGCCCCGCGCGAGCGGGGGTGCTCCG	TCCACCGCGAGACGACGGCCGCAGCCGCACGC
CTACGCCCCGCGCAAGCGGGGGTGCTCCG	GTGCGGCAGTGCAGGTCACTTTCGACGCCGAT
CTACGCCCCGCGCGAGCGGGGGTGCTCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100110879.1\|120497_124151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP022438.1\|WP_100105381.1\|100923_102078_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP022438.1\|WP_100105374.1\|95434_96163_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP022438.1\|WP_100105386.1\|110598_111423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105389.1\|124355_125156_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367510
NZ_CP022438.1\|WP_159026685.1\|112008_112314_+\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|197851
NZ_CP022438.1\|WP_100105390.1\|125213_125990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105377.1\|97100_97913_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP022438.1\|WP_100105387.1\|111610_112159_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378194
NZ_CP022438.1\|WP_100105383.1\|102871_104440_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP022438.1\|WP_100105376.1\|96162_96372_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105380.1\|100132_100927_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP022438.1\|WP_100105378.1\|97909_99460_-\|recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP022438.1\|WP_100105379.1\|99482_100136_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP022438.1\|WP_100105382.1\|102209_102875_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP022438.1\|WP_100105385.1\|109240_110467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367510
NZ_CP022438.1\|WP_100105388.1\|113271_113691_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379733
NZ_CP022438.1\|WP_159026686.1\|112370_112574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105384.1\|104814_107715_-\|CRISPR-associated-endonuclease-Cas3''	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP022438.1\|WP_100110878.1\|113693_120275_-\|type-IV-secretion-protein-Rhs	unknown	unknown	gnl\|CDD\|373061

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100110879.1\|120497_124151_-\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	9.35668e-24
NZ_CP022438.1\|WP_100105381.1\|100923_102078_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.06215e-97
NZ_CP022438.1\|WP_100105374.1\|95434_96163_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	2.37846e-16
NZ_CP022438.1\|WP_100105388.1\|113271_113691_-\|hypothetical-protein	gnl\|CDD\|379733	pfam15588, Imm10, Immunity protein 10. A predicted immunity protein with a mostly all-beta fold and a conserved arginine residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Pput_2613 deaminase domain. The protein is also found in heterogeneous poly-immunity loci.	4.24537e-09
NZ_CP022438.1\|WP_100105389.1\|124355_125156_+\|hypothetical-protein	gnl\|CDD\|367510	pfam03457, HA, Helicase associated domain. This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.	4.37469e-11
NZ_CP022438.1\|WP_159026685.1\|112008_112314_+\|PASTA-domain-containing-protein	gnl\|CDD\|197851	smart00740, PASTA, PASTA domain.	1.17026e-07
NZ_CP022438.1\|WP_100105377.1\|97100_97913_-\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	2.48055e-16
NZ_CP022438.1\|WP_100105387.1\|111610_112159_-\|hypothetical-protein	gnl\|CDD\|378194	pfam09509, Hypoth_Ymh, Protein of unknown function (Hypoth_ymh). This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.	1.7298e-17
NZ_CP022438.1\|WP_100105383.1\|102871_104440_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	4.69598e-66
NZ_CP022438.1\|WP_100110878.1\|113693_120275_-\|type-IV-secretion-protein-Rhs	gnl\|CDD\|373061	pfam14427, Pput2613-deam, Pput_2613-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Pseudomonas Pput_2613. Members of this family are predicted to function as toxins in bacterial polymorphic toxin systems.	2.95012e-18
NZ_CP022438.1\|WP_100105380.1\|100132_100927_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.0707e-34
NZ_CP022438.1\|WP_100105378.1\|97909_99460_-\|recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	3.54416e-09
NZ_CP022438.1\|WP_100105379.1\|99482_100136_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.72699e-44
NZ_CP022438.1\|WP_100105382.1\|102209_102875_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	0.000212776
NZ_CP022438.1\|WP_100105385.1\|109240_110467_+\|hypothetical-protein	gnl\|CDD\|367510	pfam03457, HA, Helicase associated domain. This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.	9.99054e-12
NZ_CP022438.1\|WP_100105384.1\|104814_107715_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.68698e-49

>NZ_CP022438.1|WP_100105384.1|104814_107715_-|CRISPR-associated-endonuclease-Cas3''
MSVLDDGRLAGIDLAPWGKFDVLTGAVYPLLFHQIDAGAAAEALWDRFLSPSQRAQIAGGLGESEPRARQVVAFLAAQHDVGKLIPCFQCDVPAARRRLGEDLLADMGRVVEVSHARASMHVGLGLLEELGFAREGNDSPAVRGAQVLGGHHGRYLQIDVDQGASAARVEALLGGPLWRDLRRRYTRLMWHIFDVEEAPKEFSVEAAVLITGLIMVADRLVSRRRFWLPLANTLSFGAFEHAARVRELAWEAVEKAGLDRITLPRAAFTAVHEGVAGPNALQASVLEQLPGWVRQRGSGIAVVTDATGSGKSVNGLEMARIFNAECGTNGVLWLLPTTATADAAFERLDRYVRAHGPERVPTAVVHSGQWLSDAYPDHTLTDDGGSVIDGPGDPADPQGRGSGPTEETDGDATGGGDGVKPAVPDSWQRGWDRALLAQFTVATVDQAQMAVLPVRFNALRMLGICGKTVVVDEAHTLEPFSQLQLRRLLNWLGSLRCPVVLLSATLPASTSSELIRAYLSGAGHTPRMLRDRSWDPGYPGWVFVDAASATAHRMDEEARDAHAAVQRRRVRISTVPVTYRRLGERGRPTEEGERLAAAEAALAPVLQSGAGCAAVVCATVADAQDTYAFLRHRWQGPAGDLVLLHARREDHRRERTIRWLRRRLGKYGPRPRRLVVVTTSLLDVSLDIDVDLMVSDLASIGRLMQRAGRLGRFTHLWAGLEGRRPPWWDEAEGPTLTVLHPVGSRGATALPPGWGSVEPAVTQHATAHLLTSRAVTTLTLPDDVQDFVEQVHGQGSAFAAETDTMQRLLAGHHARTDRQLHTGAVHLIPPPARVSSLADLHRQHLTTAQAATRLGTMPRRLVPCYRTPQGTWTLDPDGRHPLPDKPRLTPRDVRSILAHSLPVPAAWVTRPHPRTTPPDSWQRHALLAGMILLPTDPDHPNELHRTGHYELRMDAELGLVHRRDQH
>NZ_CP022438.1|WP_100105383.1|102871_104440_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MPSLPSPPSAFSAADHPWIDVRTGHRYDQTGLRALFLTAHTIDDLAIPYPPAASALLRIAIAITARITGLDDPDLTATQWTRLRRQALARGAFDPEAVHTYFDQHHFDVFHPTRPWLQDPRLPDQCTRTEGINRFTPGRPGGNNLAWFSAHHHELATPLPTGQALQYLLIHHFYGPSGTGTPRTAGGTTSRTLSSGPLRATVSFHPLGRTLHETLLAGLPKFLGDEQLLADTCPWEEGHVPDDPAAAPHPVTWPGRLLTGRSRHAVLMVPGDDQQTVTDAYVTWSTQQPRLETTDPYLVYRIDPEKPVDRRRTARRADATRAWWRELEPLVLAPDEHRAQRRPEVFDTLNDLPADVRSTLRVRVHGFDQDGKVNNRQWYTALTPPLWAWTQEHDPERAQRIAECCQAAEDIAVRLTQAADQAWADTTTPRNGSDPAKQRKPKASVWAAKAAAVYWPLAETTFWQLLDDDTPADRVFARQAVTALRQVTRTARARSQQAARAVAIAVKTLHSKDLPPKKSSRR
>NZ_CP022438.1|WP_100105382.1|102209_102875_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTPTPDERRARYDEFVASIHDLCTNPGIRAALAKGRGRPVEQCGFMDRYLTRSTAGRPGRRAHYTIAGLIALAGPAAHTPGVRPDPPHPATPANPPRSTTTTSALAAMPDSPVITTVAPAVDEAVDWVKRPNLGATLAAAVTSCGYSEERTGEQLHVLTRLGDDQVYRRLPSHITRLLGDGLTPNWAVLLSDLIQRPYQRDAVSLRWRDSFYLGLDAPRRT
>NZ_CP022438.1|WP_100105381.1|100923_102078_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MHTPARFLDLHILQPVTPANLNRDENQEPKTILVGNAIRAMVSSQSWKRQNRLGVERDLDEPAARTRLVPVIVADRLRDAGWPDDLATFTSAQIVLSAKDKGLKHNANEQYRTQAMLYLPKDAVDHLVTLCETHRPDLEEALAEHTASTKKKTPTPVLPVKAINAQLTRRTASISLFGRMLAELPNGHVEAAVQMAPAFTVHPSDPQPDFFTTVEDWPQPDDPGSAHLQTAYLTGGLFYRYSTVNITELKRNHTDGTSTLEELIELYVWHFIMSMPRAKATSTAPHTIPDLVHYVVRDSRPISYGAAFEQPVKAAPQGGYTRPARAALADYATTIDRLVGTRRRIDHGHTNFDKPLDMLGTHHECFEDLAVACAASGLAPTPTR
>NZ_CP022438.1|WP_100105380.1|100132_100927_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTGLILRLAGLQQAWGERGVFHHRDTTAFPTRSALIGLFAAAGGRSREDALTPYQQLPGTPSHHGLTFTIRIDTPGTLHHDFHTVGGGYPPEQRLRTADGGRRSEAKSTLVSHRTYLAGAVFTLAVEGPRPLLDHIADALEHPAFGIYLGRRSCPPDTPLVLATHSPDPVGELRDTVPLTLPAPPADDATHVPVTFVYEQPTDSAHASVLPDRESNSEPVDFTPINRRHLPRPLWITPEELRASLYAGPRPIDALATYITQGHP
>NZ_CP022438.1|WP_100105379.1|99482_100136_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTPTLTLLTLNPHHKTVRADLTSAVGLHKTLMRLVPDNLGPTPRAEAGLLFRLETGPAPRLLIQTRHQPDPTRLPRNYATHQMRSLTPMLNALSTGLTVRYRITAAPAASLTAHATPHPTTGKVRGKPTPLTGDDAITWWQRRATAAGLHTLTIDATPVPRRFPRTNRQGPGPNAVLTQFDGLARITDPTQLATALTTGIGRAKSYGAGLLSLTPA
>NZ_CP022438.1|WP_100105378.1|97909_99460_-|recombinase
MNPSPDITALRTTAVRRLLKLAEEHQLTRARITGVADAFGVEARTVDRWIAIARNNNGTYIPAPRPRFELTPAMLDAIARWRGNATAAYRELKADNTPNLPSSATFHRAAARALTPGMRAGLRHGEKARRAYDIAGKRPRHHRNYAWETDHVEASVRVRIDGHIRKPWITFFADCAASTLCGLAITPQRPSREAVLVAIRDAVLIDDHHGPFGGVPDRVRVDGGKEFLCKTVGEAFGVLGTERIELPPFTPEGKPIVEAINGAIKKTLFAGMPGYTHAPTLLGGKPVDPDQPLLHFEAFVAHVRTWVHWWNHEHTLDSLSGRTPAQAWNDDTTPIETIDAAALHTYTLERHGKPLTINNTGVRWRNADYIADWMHGFVGDKVTLRYLPHHDHRVELYDPTSGHHLGPAFMANQATPQQIRDLKRAQRREADRLRAKLKKAEKNRNIRYAAATQPQPPTPLLAMTEDTALEHLRDLDGHDLRDQALPDLLPLPKPADDWTRPLNTPTPEPDNEQDHP
>NZ_CP022438.1|WP_100105377.1|97100_97913_-|ATP-binding-protein
MNQPHTTERRPSQLPPPDRDHYIGLTGAHTMGTQALAATEDRIRKAIKHNAIVAIHGHVGLGKTFAVHTALRRRAPHTTLRLEFRQAPNMSELRGSLWRALDLPGEPPQSADESGQRIKRALEQSPDAVLLLDEVQWLSKTALEYIRDLWGDAERRAAVVLVGSGNTRQKILSCPALHSRVLDWYQFAPLTPAEVLTTIPAYHPMWTGADPDLILYTDDHAGHGSFRNWAKLTVHLTDALEENPNLTLSKDLIRWSFSRLDSTTRFPPSN
>NZ_CP022438.1|WP_100105376.1|96162_96372_-|hypothetical-protein
MAGKPPEGYYRVRSHWRRKPGPSRKKMSGWTIAAIVAGIWLWGQLIGFGETGESPAPAPNPAVSSSAER
>NZ_CP022438.1|WP_100105374.1|95434_96163_-|restriction-endonuclease
MSRRRLRPRMPRGAGEWAAVVALAAVTLLTKTAVAIAVAAQRAWPVLVALAAAGLLCTGWRAWRSARAARMRAQSLARLRITLMQIDAMDDQDFEFALRDLLIRDGWSARRVGQQGDQAADAIGQHPQYGRIVIQAKHTTVGAKVGSHVMYQVKGTAGPVHGADHSVVVTNGTFTRDAKAWGERHQVHWVDRDQLRAWAEHGIPLHNLLRLSPRPTRSRRTFRSRPMSSSGRRQRNARLVRR
>NZ_CP022438.1|WP_100105385.1|109240_110467_+|hypothetical-protein
MITAPNRDSSSEGTHTSHEASGHCTRRTLLPKAAWSTRLRHLGENHPEQRGESQQTSEAQQEVDRVTSVVVNFASPRDAADIAALTRCRVIRPQSLVWLEGYQALVRWRAENGITGLYAVPYDVETKAGTTKAFPLGRWVHQMRKSLRAGELDPHRKDLLDDAGMVWEPGDEAWENKLAALRSYHRAHGHLSPRQDAVWGEGEAMVPIGQHMANLRRKDGLGKDPERAAERAKQLIAVDPDWNCPWPLDWQRHYKVLADLAADEPDGVLPAIEPGVLFEGDDIGRWLQRQKNPGTWAQLSSDQQERLSKLGVQPTEGPSHAPAAARSTKGSGKAQQAFQRGLAALAQWVEREGQRPVPRGHAEEISIDGETEPVVVKLGVWVSNTKARRDKLTQEQLNALRELGMEWA
>NZ_CP022438.1|WP_100105386.1|110598_111423_+|hypothetical-protein
MLTEALLAVAGAGGTALVQAAGTDAWTGLRQRAARLLGRGDTQRERAELERLDRTAQALEEADTTGDAERTRLRQEASWQTRFESLLENLEDSEQQQVATELQALVAEQREFAARQCVVDNTFNGPAALQVGNHNQQENRFHIASYLPAPVGPRLVLHVSNSIPVYDLPDGSQDLGDHFVSVEAVNTGDQPIAITSWGIELPGDRRMFVTRGENWATPLPHVLVPGAPPARFLIRADELRRVEREQRIPYTQMRPYVGLADGTAIHADHSVPLA
>NZ_CP022438.1|WP_100105387.1|111610_112159_-|hypothetical-protein
MRTPWRSLGPSPGPCRPCRAVRRSRCWWDLLTRPRLHPGRTARGCRRCASSSCRTPSRPPTASRSATGSATLSPQTAAETLTTQVKARSGLSSMDATNVYEKVFAARAPVLRWPGDANDRTVSSMQNGLAKYAPGLNMTVRNTATHEAADEMTAQQALERLAALSLLAHWIDECEGPIPTED
>NZ_CP022438.1|WP_159026685.1|112008_112314_+|PASTA-domain-containing-protein
MKHNDDNREQFARDAAEAASADPTSTETAELPDMVGMDLDSAQEIAKVYGFRYFIDEDHSGQDRLQILDNEWTVCTQDPAPGTERVEILVTLHAVKDDETC
>NZ_CP022438.1|WP_159026686.1|112370_112574_-|hypothetical-protein
MPRLRGPNSGPAKELDALAFSYCVRMLAGAPKGFDDVTDRLVLDSIQWCTPALDVAAQTRALRLVQD
>NZ_CP022438.1|WP_100105388.1|113271_113691_-|hypothetical-protein
MATRWPIRKVHAEENVPDSCFIFGMSEDEMGEGRYLIFQSGLREPTPQQQRLGLDSYCILNEEDGQCFGGVEEVVVSEQSLHLSLTEEAASELGVADRSFDLTIEADGGGREVYEGLRRALAWGNPELHPRRVEFRTQG
>NZ_CP022438.1|WP_100110878.1|113693_120275_-|type-IV-secretion-protein-Rhs
MPAGLTPIAAATEPLGRPGVPGPRVSKVIPAPTGAKKARESVAKAKADNAKLAQTARAERAVTWPKPTSHIRELGAKPASTDLVQLRPAAPAKDTKRSAAKTTQGADGSATVEVLDQKAARKAGITGVLFTAAAEVPGAAQVTVDYKPFASALGGNWAGRLGLVSLPACALTTPQKPACRKQTPLPSTNDTIAQTVTAPTTVTAATTGKEAPASASPGGAKTATMTAPTVMALTATSGSSERGDHTATPLSSSATWEAGSSSGSYSWSYPIAVPPAVAGPVPPLSLSYDSGSIDGRTANTNNQGSQVGTGFDLTSSYVERKYGSCDDDGQDGKADLCWKYENATLVLNGQAIELVKDDTSGAWRLKNDDASKVAHKTGADNGDDGDDIVNGTGDGKGEHWVLTKGDGTTYTFGLNKLPGAGTERTNSVWTVPVFGEDSGEPGYSSGSTFAGRAKTQAWRWNLDFVQDVHGNASTYWYTAEGNHYAKNGDKTNLAAYTRGGYLKQIQYGQRADTLFTGVTASKIDFTYAERCTAADCSSLNADTADNWPDVPFDALCTASETDCIATGPAFFTRKRLTGIDTSVWSTAVEPDAFKPVDSYKLTQEFLDGQDIGNSSDQSLTLKSLQRTGKNGTAITLPAVDFTYHMRPNRVDSPSDNIAPVSMPRLNQVVSETGAITTITMSAPECVIGSKMPAAEDNNNLSCFPVYWPINAGDPALDWFHKYNVTAVTVSDPAGNNEALEYSYTYETPGWHYNDDPLTKENERTWSSWRGYQKVTAYTGDSAHPRTKTVKLFMQGMHGDKRKDGTTRTAVVKGIDLDNDPSTTTDNRDLGDANDLDVYAGQLRQQITYNGATAIANTFNSIWFKQTASQQKSYAHTKAYFVRTSRTYSDTYLTAAKKWRTAVTSYTFDDTYGMPTRTENHGDWAKAGDETCTRTWYARNPDAGLTSLVSRTRTVGSACLASGVLITDDQLDLPANSDTPGDVLSDTATVYDTPNATGWIANQTPSLGLPTWTGRAKAYPAPIGTADRHPAVNGGWQTVSHTTYDTATSKLGRPISITNADGKTSTTTYYPAATGPLTSTIITGPALASNGQTHKAYTYFDPARGTITRNFDANLKRTEHTYDALGRITATWLPNRDKSAGYSASVTYAYHLIRNAEPWTSTSTLKADGTTYQTSYAISDSLLRPLQTQTASPLGGRILTDTRYDSRGLAYETYGDIYDNANAPNGTYTRASYAHTPVLNQTTFDAAARPTTSSLLVLGVKKWETTTSYTGDSVASTAVQGGTATRTVTDALGRTAETRTYAGTTPADPQYGQATGTPYTSVTYVYGRDDKPAQITGPDNAKWTYVYDLFGRQVRATDPDSGTRTTTYTALDQTATTTDARGKTLHYSYDELGRKTGLWQTAKTDGNKLAAWTYDTLLKGLPTASTRYVGGVAGEAYTKKVTAYDSLGRATSTELSLPADHPLVVSGAISATTTFGTAYRVDGTISNVKEPAAAGLPAEIVSPKYNSYGLPIELSGTSSYLLGVSYTALGQVQQMTLGTSDAFGIKKAYLTNKFEEGTGRLLQSMVTDQSHPWTLQDLNYTYAPAGNVTSISDPSTLGGTSEADHQCFTYDGQRRLTEAWTPKTNDCSTTGRTAANLDGPAPYWTSYTYNTAGQRTTETQHTTSGNTTRTYCYSDTRTHALTATTTGSCTGAAAQYTYDAGGNTTRRVEKTGSTTSQDLDWNSEGQLSRLTEGTSSTDYLYDADGELLIRRTVGGETILYLGSTEVHATGTKQWANRYYSVGGNTIAVRSNESGIAQLSWLAGDHHGTQSLAVDAGSAQTFSKRYMSPFGANRGTPTGGPWPDDKGFLGKTNDKSTGLTHIGARQYDPAIGQFISVDPLLIPEQHQSLNGYSYANQHPTTTSDPTGLCEDPGNGRCHQSSTTGSGKGPTYDTAFPENPGVDYTPVVDVNLDSGNGRGKDSGACSVLAGNCSRDAMTGPADPGVFWSAVLGLMANIPYTVELFGWPVDGDCRTGGGPGTPGCDYGAQYDQWAAASGVETASGEYLLPGLIAALLSKHPGRGGYKPGAGTIVGPRTNNTHWASVTVQDSGGNHVNAFSLRSGSQTPGERALGFPNNAQASHTEARAARMVGGSATVKITNDGYSNTVPVSSGDTVTIYALRPPCGQCQGSMSRAAEETGTTFVYIWGKGNSWSSEG
>NZ_CP022438.1|WP_100110879.1|120497_124151_-|hypothetical-protein
MPALPAAVAAPVVTPAATAAVSAVSDDQKALAEAAETGERVEVAGERTERETVFANPDGVTFTLEKSITPVRVAAPEGGWVAPDATLVRRSDGSVGPKAAAVDLAFSAGGDGKDLVRIADDGQAVALGWPGELPPPRLEGERAVYPNVLPDVDLIMTATVEGFRQVLEVKTPEAAANPALRTLDFALGTDNLRMERGAGGGVDALDGNGQVVFRSPAARMWDSAGDAAQPADGVNTQVAGVRPLGESAAESDPMPAGPVEEGDPLAGPGAGDESAVLDLEVSKDTVTVTPDAEMLSGTAADAFPLYIDPSVELNESERTVLSSDGDVFYNFSGGDTGMSVGKCGTGVVNGVAYYCGSGYVNRMYFEFAPGNLKGKHVLDATFRVTETWSFACEARWVDLERTNNISSASKWPGPAKLDQMGDRNVSAGRNTLCDPSQPRAPIEFNDYPAEPDENLTPTVRAFADGKFARLTLMLMAKDESDTVAWKRFDDDAVLSVDYVGKPALPSNIGLVTGTNTQTCRTTEATALTVTDPTPAITATPQTAAGGEAGAQLRAVMDTEKKSGTSWTNLADIERPTSGYVGDNVRVTVSTPTLEENALYRYRAWTRSYYGGGYLSGPSNASTTGWCYFKVDSTAPKAPTITFNGPYTQCATTCDPRGGVGIEGKFTLGPAAGDVNTAYRYKLSTNNTWSGWISGATVQISVTPTTSGTILLSAEAKDTVGDGAETTVQFNVKEGNGPLGSWDFDTTDATTGAVIDTSTTNSALRDDATLYGGATLTDRGRRGQLTGTDTDRGLSLNGTTAYAATSGPVIDTRASYAVAAWVHMDQPTGNHTALGQDGVNRSPFLLGYEHSLKKWTFRAVDSDAPADGTWSYQRVASQNNAVSGVWTHLVGTYDAAAKTLSLYVNGQLQGTTAYTTAWNATGPLQIGRVKWSGSYVTYFPGSIDEVAIWQQAATTAGDQFVKHAELKDANGKPHTELVASYRPAGAQGTSLADTSGYGRPLTLAAGASLNGEELVLDGTSGAGTAAGPLVDDSGSFTVTTEALVDSAKMLTKTDGYKAQILGQRTATGSSWSLWFEKTKTRDEVVRDEYGDPVFDENGEFQYRKVPVGRWHFGRLTADGSGVSVSSIEDPLADDEVRLTGVFNAQAGTISLYLTAEQQNHALAYTAAVGSGEFAVGKGYLNSVWGNYLPGRISDIRLWSGALADGQHVADVLGTNSTT
>NZ_CP022438.1|WP_100105389.1|124355_125156_+|hypothetical-protein
MRTHARTTEHQTQPLRRLRTVSVNELLSRHRSHLLKRFPQRTFLEAEFIGPGHRVATSAIRANPIQLHRATIATNFEHEAHHFRPLEADGAAAGLSAKRRRELDDIDPAWCPVWPVAWQHCFHLARTHVADGGTLVEDSGLLIIQGEDIGRWVRSQRTEWDALLPVQQWLLAESLGLGPLEEEKPAADRTEAVPRRSRAQMWAANLAAARQYAQREGHLNVPRSHIETLDGEQQALGVFIANSRARRASLAPERIEELTAIGMRWS
>NZ_CP022438.1|WP_100105390.1|125213_125990_+|hypothetical-protein
MRRRPHLAQAMLDGYDGWHMVNPLVVRRHELIVAFGGQALTAEDVFTTTAESPFHTYRPTLGGAVASSAQEQIADIIWRAAWEELLREETLPKEDLDATNAVIERWAATHAALAQYLRDNPAERDIRMVAATFMIGDLKLEIAQACARADVSGEELAAHLQPENVVGFFTRLPFTGRVLQVTQTRLRNPSDKWVNHDLNDLYFLACSAAYADHVVAEKKTGHLLNVAGRTLPAQRASVHLNLRSLVRDTQVSGSSQGR

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Crispr_ID: NZ_CP022438_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_3

108514-109031

TypeI-E

Consensus_repeat	Method
CTACGCCCCGCGCGAGCGGGGGTGCTCCG	CRISPRCasFinder

8 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP022438_3

>merge|NZ_CP022438|3|108514-109031|CRISPRCasFinder
CTCAACCCCGCGCGAGCGGGGGTGCTTCGCGGGGGATCGGCTGTCACCGCCACACGCCGCGCTACGCCCCGCGCCAGCGGGGGTGACTCTGCCTCAGCCTCCTTGGCCACGTGGTGGAAATCTAGTCCGCGCGCAAGCGCGGGTGACTCCACTGGGACGATCATCCGGGCGATGTTCATCGCGCCTCCCACCCCGCGCCAGCGGGGGTGCTCCAGCCCTCGTCGCCCTCAACACCGTCCAGGAGACCTACATCCCGCGCAAGCGAGGGTGTTCCGACGGGCCACTGCTGCCGCGCGCACCAGGCGGCCTACGCCCCGCGCGAGCGGGGGTGCTCCGGCCCACCTGCGGTCCGTGCCGAAGTCGGAGGACTACGCCCTGCGCGAGCGGGGGTGCTCCGTGCCTCGCCTTGGGACGCGTCCACACCTGTCGTAAGTCCCGCGCGAGCGGGAGTGACTCGGCGCCGGGATCCCAGTCCATGGCCAACGCGTCGTAAGCCCTGCGCGAGCAGGTGTGCTCAT

>NZ_CP022438|3|3|108514-109031|CRISPRCasFinder
CTCAACCCCGCGCGAGCGGGGGTGCTTCG	CGGGGGATCGGCTGTCACCGCCACACGCCGCG
CTACGCCCCGCGCCAGCGGGGGTGACTCT	GCCTCAGCCTCCTTGGCCACGTGGTGGAAAT
CTAGTCCGCGCGCAAGCGCGGGTGACTCC	ACTGGGACGATCATCCGGGCGATGTTCATCGCGCC
TCCCACCCCGCGCCAGCGGGGGTGCTCCA	GCCCTCGTCGCCCTCAACACCGTCCAGGAGAC
CTACATCCCGCGCAAGCGAGGGTGTTCCG	ACGGGCCACTGCTGCCGCGCGCACCAGGCGGC
CTACGCCCCGCGCGAGCGGGGGTGCTCCG	GCCCACCTGCGGTCCGTGCCGAAGTCGGAGGA
CTACGCCCTGCGCGAGCGGGGGTGCTCCG	TGCCTCGCCTTGGGACGCGTCCACACCTGTC
GTAAGTCCCGCGCGAGCGGGAGTGACTCG	GCGCCGGGATCCCAGTCCATGGCCAACGCGTC
GTAAGCCCTGCGCGAGCAGGTGTGCTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100110879.1\|120497_124151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP022438.1\|WP_100105381.1\|100923_102078_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP022438.1\|WP_100105374.1\|95434_96163_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP022438.1\|WP_100105386.1\|110598_111423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105389.1\|124355_125156_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367510
NZ_CP022438.1\|WP_159026685.1\|112008_112314_+\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|197851
NZ_CP022438.1\|WP_100105390.1\|125213_125990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105377.1\|97100_97913_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP022438.1\|WP_100105387.1\|111610_112159_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378194
NZ_CP022438.1\|WP_100105383.1\|102871_104440_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP022438.1\|WP_100105376.1\|96162_96372_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105380.1\|100132_100927_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP022438.1\|WP_100105378.1\|97909_99460_-\|recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP022438.1\|WP_100105379.1\|99482_100136_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP022438.1\|WP_100105382.1\|102209_102875_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP022438.1\|WP_100105385.1\|109240_110467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367510
NZ_CP022438.1\|WP_100105388.1\|113271_113691_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379733
NZ_CP022438.1\|WP_159026686.1\|112370_112574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100105384.1\|104814_107715_-\|CRISPR-associated-endonuclease-Cas3''	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP022438.1\|WP_100110878.1\|113693_120275_-\|type-IV-secretion-protein-Rhs	unknown	unknown	gnl\|CDD\|373061

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100110879.1\|120497_124151_-\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	9.35668e-24
NZ_CP022438.1\|WP_100105381.1\|100923_102078_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.06215e-97
NZ_CP022438.1\|WP_100105374.1\|95434_96163_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	2.37846e-16
NZ_CP022438.1\|WP_100105388.1\|113271_113691_-\|hypothetical-protein	gnl\|CDD\|379733	pfam15588, Imm10, Immunity protein 10. A predicted immunity protein with a mostly all-beta fold and a conserved arginine residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Pput_2613 deaminase domain. The protein is also found in heterogeneous poly-immunity loci.	4.24537e-09
NZ_CP022438.1\|WP_100105389.1\|124355_125156_+\|hypothetical-protein	gnl\|CDD\|367510	pfam03457, HA, Helicase associated domain. This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.	4.37469e-11
NZ_CP022438.1\|WP_159026685.1\|112008_112314_+\|PASTA-domain-containing-protein	gnl\|CDD\|197851	smart00740, PASTA, PASTA domain.	1.17026e-07
NZ_CP022438.1\|WP_100105377.1\|97100_97913_-\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	2.48055e-16
NZ_CP022438.1\|WP_100105387.1\|111610_112159_-\|hypothetical-protein	gnl\|CDD\|378194	pfam09509, Hypoth_Ymh, Protein of unknown function (Hypoth_ymh). This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.	1.7298e-17
NZ_CP022438.1\|WP_100105383.1\|102871_104440_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	4.69598e-66
NZ_CP022438.1\|WP_100110878.1\|113693_120275_-\|type-IV-secretion-protein-Rhs	gnl\|CDD\|373061	pfam14427, Pput2613-deam, Pput_2613-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Pseudomonas Pput_2613. Members of this family are predicted to function as toxins in bacterial polymorphic toxin systems.	2.95012e-18
NZ_CP022438.1\|WP_100105380.1\|100132_100927_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.0707e-34
NZ_CP022438.1\|WP_100105378.1\|97909_99460_-\|recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	3.54416e-09
NZ_CP022438.1\|WP_100105379.1\|99482_100136_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.72699e-44
NZ_CP022438.1\|WP_100105382.1\|102209_102875_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	0.000212776
NZ_CP022438.1\|WP_100105385.1\|109240_110467_+\|hypothetical-protein	gnl\|CDD\|367510	pfam03457, HA, Helicase associated domain. This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.	9.99054e-12
NZ_CP022438.1\|WP_100105384.1\|104814_107715_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.68698e-49

>NZ_CP022438.1|WP_100105384.1|104814_107715_-|CRISPR-associated-endonuclease-Cas3''
MSVLDDGRLAGIDLAPWGKFDVLTGAVYPLLFHQIDAGAAAEALWDRFLSPSQRAQIAGGLGESEPRARQVVAFLAAQHDVGKLIPCFQCDVPAARRRLGEDLLADMGRVVEVSHARASMHVGLGLLEELGFAREGNDSPAVRGAQVLGGHHGRYLQIDVDQGASAARVEALLGGPLWRDLRRRYTRLMWHIFDVEEAPKEFSVEAAVLITGLIMVADRLVSRRRFWLPLANTLSFGAFEHAARVRELAWEAVEKAGLDRITLPRAAFTAVHEGVAGPNALQASVLEQLPGWVRQRGSGIAVVTDATGSGKSVNGLEMARIFNAECGTNGVLWLLPTTATADAAFERLDRYVRAHGPERVPTAVVHSGQWLSDAYPDHTLTDDGGSVIDGPGDPADPQGRGSGPTEETDGDATGGGDGVKPAVPDSWQRGWDRALLAQFTVATVDQAQMAVLPVRFNALRMLGICGKTVVVDEAHTLEPFSQLQLRRLLNWLGSLRCPVVLLSATLPASTSSELIRAYLSGAGHTPRMLRDRSWDPGYPGWVFVDAASATAHRMDEEARDAHAAVQRRRVRISTVPVTYRRLGERGRPTEEGERLAAAEAALAPVLQSGAGCAAVVCATVADAQDTYAFLRHRWQGPAGDLVLLHARREDHRRERTIRWLRRRLGKYGPRPRRLVVVTTSLLDVSLDIDVDLMVSDLASIGRLMQRAGRLGRFTHLWAGLEGRRPPWWDEAEGPTLTVLHPVGSRGATALPPGWGSVEPAVTQHATAHLLTSRAVTTLTLPDDVQDFVEQVHGQGSAFAAETDTMQRLLAGHHARTDRQLHTGAVHLIPPPARVSSLADLHRQHLTTAQAATRLGTMPRRLVPCYRTPQGTWTLDPDGRHPLPDKPRLTPRDVRSILAHSLPVPAAWVTRPHPRTTPPDSWQRHALLAGMILLPTDPDHPNELHRTGHYELRMDAELGLVHRRDQH
>NZ_CP022438.1|WP_100105383.1|102871_104440_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MPSLPSPPSAFSAADHPWIDVRTGHRYDQTGLRALFLTAHTIDDLAIPYPPAASALLRIAIAITARITGLDDPDLTATQWTRLRRQALARGAFDPEAVHTYFDQHHFDVFHPTRPWLQDPRLPDQCTRTEGINRFTPGRPGGNNLAWFSAHHHELATPLPTGQALQYLLIHHFYGPSGTGTPRTAGGTTSRTLSSGPLRATVSFHPLGRTLHETLLAGLPKFLGDEQLLADTCPWEEGHVPDDPAAAPHPVTWPGRLLTGRSRHAVLMVPGDDQQTVTDAYVTWSTQQPRLETTDPYLVYRIDPEKPVDRRRTARRADATRAWWRELEPLVLAPDEHRAQRRPEVFDTLNDLPADVRSTLRVRVHGFDQDGKVNNRQWYTALTPPLWAWTQEHDPERAQRIAECCQAAEDIAVRLTQAADQAWADTTTPRNGSDPAKQRKPKASVWAAKAAAVYWPLAETTFWQLLDDDTPADRVFARQAVTALRQVTRTARARSQQAARAVAIAVKTLHSKDLPPKKSSRR
>NZ_CP022438.1|WP_100105382.1|102209_102875_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTPTPDERRARYDEFVASIHDLCTNPGIRAALAKGRGRPVEQCGFMDRYLTRSTAGRPGRRAHYTIAGLIALAGPAAHTPGVRPDPPHPATPANPPRSTTTTSALAAMPDSPVITTVAPAVDEAVDWVKRPNLGATLAAAVTSCGYSEERTGEQLHVLTRLGDDQVYRRLPSHITRLLGDGLTPNWAVLLSDLIQRPYQRDAVSLRWRDSFYLGLDAPRRT
>NZ_CP022438.1|WP_100105381.1|100923_102078_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MHTPARFLDLHILQPVTPANLNRDENQEPKTILVGNAIRAMVSSQSWKRQNRLGVERDLDEPAARTRLVPVIVADRLRDAGWPDDLATFTSAQIVLSAKDKGLKHNANEQYRTQAMLYLPKDAVDHLVTLCETHRPDLEEALAEHTASTKKKTPTPVLPVKAINAQLTRRTASISLFGRMLAELPNGHVEAAVQMAPAFTVHPSDPQPDFFTTVEDWPQPDDPGSAHLQTAYLTGGLFYRYSTVNITELKRNHTDGTSTLEELIELYVWHFIMSMPRAKATSTAPHTIPDLVHYVVRDSRPISYGAAFEQPVKAAPQGGYTRPARAALADYATTIDRLVGTRRRIDHGHTNFDKPLDMLGTHHECFEDLAVACAASGLAPTPTR
>NZ_CP022438.1|WP_100105380.1|100132_100927_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTGLILRLAGLQQAWGERGVFHHRDTTAFPTRSALIGLFAAAGGRSREDALTPYQQLPGTPSHHGLTFTIRIDTPGTLHHDFHTVGGGYPPEQRLRTADGGRRSEAKSTLVSHRTYLAGAVFTLAVEGPRPLLDHIADALEHPAFGIYLGRRSCPPDTPLVLATHSPDPVGELRDTVPLTLPAPPADDATHVPVTFVYEQPTDSAHASVLPDRESNSEPVDFTPINRRHLPRPLWITPEELRASLYAGPRPIDALATYITQGHP
>NZ_CP022438.1|WP_100105379.1|99482_100136_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTTPTLTLLTLNPHHKTVRADLTSAVGLHKTLMRLVPDNLGPTPRAEAGLLFRLETGPAPRLLIQTRHQPDPTRLPRNYATHQMRSLTPMLNALSTGLTVRYRITAAPAASLTAHATPHPTTGKVRGKPTPLTGDDAITWWQRRATAAGLHTLTIDATPVPRRFPRTNRQGPGPNAVLTQFDGLARITDPTQLATALTTGIGRAKSYGAGLLSLTPA
>NZ_CP022438.1|WP_100105378.1|97909_99460_-|recombinase
MNPSPDITALRTTAVRRLLKLAEEHQLTRARITGVADAFGVEARTVDRWIAIARNNNGTYIPAPRPRFELTPAMLDAIARWRGNATAAYRELKADNTPNLPSSATFHRAAARALTPGMRAGLRHGEKARRAYDIAGKRPRHHRNYAWETDHVEASVRVRIDGHIRKPWITFFADCAASTLCGLAITPQRPSREAVLVAIRDAVLIDDHHGPFGGVPDRVRVDGGKEFLCKTVGEAFGVLGTERIELPPFTPEGKPIVEAINGAIKKTLFAGMPGYTHAPTLLGGKPVDPDQPLLHFEAFVAHVRTWVHWWNHEHTLDSLSGRTPAQAWNDDTTPIETIDAAALHTYTLERHGKPLTINNTGVRWRNADYIADWMHGFVGDKVTLRYLPHHDHRVELYDPTSGHHLGPAFMANQATPQQIRDLKRAQRREADRLRAKLKKAEKNRNIRYAAATQPQPPTPLLAMTEDTALEHLRDLDGHDLRDQALPDLLPLPKPADDWTRPLNTPTPEPDNEQDHP
>NZ_CP022438.1|WP_100105377.1|97100_97913_-|ATP-binding-protein
MNQPHTTERRPSQLPPPDRDHYIGLTGAHTMGTQALAATEDRIRKAIKHNAIVAIHGHVGLGKTFAVHTALRRRAPHTTLRLEFRQAPNMSELRGSLWRALDLPGEPPQSADESGQRIKRALEQSPDAVLLLDEVQWLSKTALEYIRDLWGDAERRAAVVLVGSGNTRQKILSCPALHSRVLDWYQFAPLTPAEVLTTIPAYHPMWTGADPDLILYTDDHAGHGSFRNWAKLTVHLTDALEENPNLTLSKDLIRWSFSRLDSTTRFPPSN
>NZ_CP022438.1|WP_100105376.1|96162_96372_-|hypothetical-protein
MAGKPPEGYYRVRSHWRRKPGPSRKKMSGWTIAAIVAGIWLWGQLIGFGETGESPAPAPNPAVSSSAER
>NZ_CP022438.1|WP_100105374.1|95434_96163_-|restriction-endonuclease
MSRRRLRPRMPRGAGEWAAVVALAAVTLLTKTAVAIAVAAQRAWPVLVALAAAGLLCTGWRAWRSARAARMRAQSLARLRITLMQIDAMDDQDFEFALRDLLIRDGWSARRVGQQGDQAADAIGQHPQYGRIVIQAKHTTVGAKVGSHVMYQVKGTAGPVHGADHSVVVTNGTFTRDAKAWGERHQVHWVDRDQLRAWAEHGIPLHNLLRLSPRPTRSRRTFRSRPMSSSGRRQRNARLVRR
>NZ_CP022438.1|WP_100105385.1|109240_110467_+|hypothetical-protein
MITAPNRDSSSEGTHTSHEASGHCTRRTLLPKAAWSTRLRHLGENHPEQRGESQQTSEAQQEVDRVTSVVVNFASPRDAADIAALTRCRVIRPQSLVWLEGYQALVRWRAENGITGLYAVPYDVETKAGTTKAFPLGRWVHQMRKSLRAGELDPHRKDLLDDAGMVWEPGDEAWENKLAALRSYHRAHGHLSPRQDAVWGEGEAMVPIGQHMANLRRKDGLGKDPERAAERAKQLIAVDPDWNCPWPLDWQRHYKVLADLAADEPDGVLPAIEPGVLFEGDDIGRWLQRQKNPGTWAQLSSDQQERLSKLGVQPTEGPSHAPAAARSTKGSGKAQQAFQRGLAALAQWVEREGQRPVPRGHAEEISIDGETEPVVVKLGVWVSNTKARRDKLTQEQLNALRELGMEWA
>NZ_CP022438.1|WP_100105386.1|110598_111423_+|hypothetical-protein
MLTEALLAVAGAGGTALVQAAGTDAWTGLRQRAARLLGRGDTQRERAELERLDRTAQALEEADTTGDAERTRLRQEASWQTRFESLLENLEDSEQQQVATELQALVAEQREFAARQCVVDNTFNGPAALQVGNHNQQENRFHIASYLPAPVGPRLVLHVSNSIPVYDLPDGSQDLGDHFVSVEAVNTGDQPIAITSWGIELPGDRRMFVTRGENWATPLPHVLVPGAPPARFLIRADELRRVEREQRIPYTQMRPYVGLADGTAIHADHSVPLA
>NZ_CP022438.1|WP_100105387.1|111610_112159_-|hypothetical-protein
MRTPWRSLGPSPGPCRPCRAVRRSRCWWDLLTRPRLHPGRTARGCRRCASSSCRTPSRPPTASRSATGSATLSPQTAAETLTTQVKARSGLSSMDATNVYEKVFAARAPVLRWPGDANDRTVSSMQNGLAKYAPGLNMTVRNTATHEAADEMTAQQALERLAALSLLAHWIDECEGPIPTED
>NZ_CP022438.1|WP_159026685.1|112008_112314_+|PASTA-domain-containing-protein
MKHNDDNREQFARDAAEAASADPTSTETAELPDMVGMDLDSAQEIAKVYGFRYFIDEDHSGQDRLQILDNEWTVCTQDPAPGTERVEILVTLHAVKDDETC
>NZ_CP022438.1|WP_159026686.1|112370_112574_-|hypothetical-protein
MPRLRGPNSGPAKELDALAFSYCVRMLAGAPKGFDDVTDRLVLDSIQWCTPALDVAAQTRALRLVQD
>NZ_CP022438.1|WP_100105388.1|113271_113691_-|hypothetical-protein
MATRWPIRKVHAEENVPDSCFIFGMSEDEMGEGRYLIFQSGLREPTPQQQRLGLDSYCILNEEDGQCFGGVEEVVVSEQSLHLSLTEEAASELGVADRSFDLTIEADGGGREVYEGLRRALAWGNPELHPRRVEFRTQG
>NZ_CP022438.1|WP_100110878.1|113693_120275_-|type-IV-secretion-protein-Rhs
MPAGLTPIAAATEPLGRPGVPGPRVSKVIPAPTGAKKARESVAKAKADNAKLAQTARAERAVTWPKPTSHIRELGAKPASTDLVQLRPAAPAKDTKRSAAKTTQGADGSATVEVLDQKAARKAGITGVLFTAAAEVPGAAQVTVDYKPFASALGGNWAGRLGLVSLPACALTTPQKPACRKQTPLPSTNDTIAQTVTAPTTVTAATTGKEAPASASPGGAKTATMTAPTVMALTATSGSSERGDHTATPLSSSATWEAGSSSGSYSWSYPIAVPPAVAGPVPPLSLSYDSGSIDGRTANTNNQGSQVGTGFDLTSSYVERKYGSCDDDGQDGKADLCWKYENATLVLNGQAIELVKDDTSGAWRLKNDDASKVAHKTGADNGDDGDDIVNGTGDGKGEHWVLTKGDGTTYTFGLNKLPGAGTERTNSVWTVPVFGEDSGEPGYSSGSTFAGRAKTQAWRWNLDFVQDVHGNASTYWYTAEGNHYAKNGDKTNLAAYTRGGYLKQIQYGQRADTLFTGVTASKIDFTYAERCTAADCSSLNADTADNWPDVPFDALCTASETDCIATGPAFFTRKRLTGIDTSVWSTAVEPDAFKPVDSYKLTQEFLDGQDIGNSSDQSLTLKSLQRTGKNGTAITLPAVDFTYHMRPNRVDSPSDNIAPVSMPRLNQVVSETGAITTITMSAPECVIGSKMPAAEDNNNLSCFPVYWPINAGDPALDWFHKYNVTAVTVSDPAGNNEALEYSYTYETPGWHYNDDPLTKENERTWSSWRGYQKVTAYTGDSAHPRTKTVKLFMQGMHGDKRKDGTTRTAVVKGIDLDNDPSTTTDNRDLGDANDLDVYAGQLRQQITYNGATAIANTFNSIWFKQTASQQKSYAHTKAYFVRTSRTYSDTYLTAAKKWRTAVTSYTFDDTYGMPTRTENHGDWAKAGDETCTRTWYARNPDAGLTSLVSRTRTVGSACLASGVLITDDQLDLPANSDTPGDVLSDTATVYDTPNATGWIANQTPSLGLPTWTGRAKAYPAPIGTADRHPAVNGGWQTVSHTTYDTATSKLGRPISITNADGKTSTTTYYPAATGPLTSTIITGPALASNGQTHKAYTYFDPARGTITRNFDANLKRTEHTYDALGRITATWLPNRDKSAGYSASVTYAYHLIRNAEPWTSTSTLKADGTTYQTSYAISDSLLRPLQTQTASPLGGRILTDTRYDSRGLAYETYGDIYDNANAPNGTYTRASYAHTPVLNQTTFDAAARPTTSSLLVLGVKKWETTTSYTGDSVASTAVQGGTATRTVTDALGRTAETRTYAGTTPADPQYGQATGTPYTSVTYVYGRDDKPAQITGPDNAKWTYVYDLFGRQVRATDPDSGTRTTTYTALDQTATTTDARGKTLHYSYDELGRKTGLWQTAKTDGNKLAAWTYDTLLKGLPTASTRYVGGVAGEAYTKKVTAYDSLGRATSTELSLPADHPLVVSGAISATTTFGTAYRVDGTISNVKEPAAAGLPAEIVSPKYNSYGLPIELSGTSSYLLGVSYTALGQVQQMTLGTSDAFGIKKAYLTNKFEEGTGRLLQSMVTDQSHPWTLQDLNYTYAPAGNVTSISDPSTLGGTSEADHQCFTYDGQRRLTEAWTPKTNDCSTTGRTAANLDGPAPYWTSYTYNTAGQRTTETQHTTSGNTTRTYCYSDTRTHALTATTTGSCTGAAAQYTYDAGGNTTRRVEKTGSTTSQDLDWNSEGQLSRLTEGTSSTDYLYDADGELLIRRTVGGETILYLGSTEVHATGTKQWANRYYSVGGNTIAVRSNESGIAQLSWLAGDHHGTQSLAVDAGSAQTFSKRYMSPFGANRGTPTGGPWPDDKGFLGKTNDKSTGLTHIGARQYDPAIGQFISVDPLLIPEQHQSLNGYSYANQHPTTTSDPTGLCEDPGNGRCHQSSTTGSGKGPTYDTAFPENPGVDYTPVVDVNLDSGNGRGKDSGACSVLAGNCSRDAMTGPADPGVFWSAVLGLMANIPYTVELFGWPVDGDCRTGGGPGTPGCDYGAQYDQWAAASGVETASGEYLLPGLIAALLSKHPGRGGYKPGAGTIVGPRTNNTHWASVTVQDSGGNHVNAFSLRSGSQTPGERALGFPNNAQASHTEARAARMVGGSATVKITNDGYSNTVPVSSGDTVTIYALRPPCGQCQGSMSRAAEETGTTFVYIWGKGNSWSSEG
>NZ_CP022438.1|WP_100110879.1|120497_124151_-|hypothetical-protein
MPALPAAVAAPVVTPAATAAVSAVSDDQKALAEAAETGERVEVAGERTERETVFANPDGVTFTLEKSITPVRVAAPEGGWVAPDATLVRRSDGSVGPKAAAVDLAFSAGGDGKDLVRIADDGQAVALGWPGELPPPRLEGERAVYPNVLPDVDLIMTATVEGFRQVLEVKTPEAAANPALRTLDFALGTDNLRMERGAGGGVDALDGNGQVVFRSPAARMWDSAGDAAQPADGVNTQVAGVRPLGESAAESDPMPAGPVEEGDPLAGPGAGDESAVLDLEVSKDTVTVTPDAEMLSGTAADAFPLYIDPSVELNESERTVLSSDGDVFYNFSGGDTGMSVGKCGTGVVNGVAYYCGSGYVNRMYFEFAPGNLKGKHVLDATFRVTETWSFACEARWVDLERTNNISSASKWPGPAKLDQMGDRNVSAGRNTLCDPSQPRAPIEFNDYPAEPDENLTPTVRAFADGKFARLTLMLMAKDESDTVAWKRFDDDAVLSVDYVGKPALPSNIGLVTGTNTQTCRTTEATALTVTDPTPAITATPQTAAGGEAGAQLRAVMDTEKKSGTSWTNLADIERPTSGYVGDNVRVTVSTPTLEENALYRYRAWTRSYYGGGYLSGPSNASTTGWCYFKVDSTAPKAPTITFNGPYTQCATTCDPRGGVGIEGKFTLGPAAGDVNTAYRYKLSTNNTWSGWISGATVQISVTPTTSGTILLSAEAKDTVGDGAETTVQFNVKEGNGPLGSWDFDTTDATTGAVIDTSTTNSALRDDATLYGGATLTDRGRRGQLTGTDTDRGLSLNGTTAYAATSGPVIDTRASYAVAAWVHMDQPTGNHTALGQDGVNRSPFLLGYEHSLKKWTFRAVDSDAPADGTWSYQRVASQNNAVSGVWTHLVGTYDAAAKTLSLYVNGQLQGTTAYTTAWNATGPLQIGRVKWSGSYVTYFPGSIDEVAIWQQAATTAGDQFVKHAELKDANGKPHTELVASYRPAGAQGTSLADTSGYGRPLTLAAGASLNGEELVLDGTSGAGTAAGPLVDDSGSFTVTTEALVDSAKMLTKTDGYKAQILGQRTATGSSWSLWFEKTKTRDEVVRDEYGDPVFDENGEFQYRKVPVGRWHFGRLTADGSGVSVSSIEDPLADDEVRLTGVFNAQAGTISLYLTAEQQNHALAYTAAVGSGEFAVGKGYLNSVWGNYLPGRISDIRLWSGALADGQHVADVLGTNSTT
>NZ_CP022438.1|WP_100105389.1|124355_125156_+|hypothetical-protein
MRTHARTTEHQTQPLRRLRTVSVNELLSRHRSHLLKRFPQRTFLEAEFIGPGHRVATSAIRANPIQLHRATIATNFEHEAHHFRPLEADGAAAGLSAKRRRELDDIDPAWCPVWPVAWQHCFHLARTHVADGGTLVEDSGLLIIQGEDIGRWVRSQRTEWDALLPVQQWLLAESLGLGPLEEEKPAADRTEAVPRRSRAQMWAANLAAARQYAQREGHLNVPRSHIETLDGEQQALGVFIANSRARRASLAPERIEELTAIGMRWS
>NZ_CP022438.1|WP_100105390.1|125213_125990_+|hypothetical-protein
MRRRPHLAQAMLDGYDGWHMVNPLVVRRHELIVAFGGQALTAEDVFTTTAESPFHTYRPTLGGAVASSAQEQIADIIWRAAWEELLREETLPKEDLDATNAVIERWAATHAALAQYLRDNPAERDIRMVAATFMIGDLKLEIAQACARADVSGEELAAHLQPENVVGFFTRLPFTGRVLQVTQTRLRNPSDKWVNHDLNDLYFLACSAAYADHVVAEKKTGHLLNVAGRTLPAQRASVHLNLRSLVRDTQVSGSSQGR

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Crispr_ID: NZ_CP022438_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_4

2439667-2439771

Orphan

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGGGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022438_4

>merge|NZ_CP022438|4|2439667-2439771|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGATCGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGGGGAT

>NZ_CP022438|4|4|2439667-2439771|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGAT	CGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGGGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100107050.1\|2443604_2445527_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP022438.1\|WP_100107053.1\|2447487_2448483_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_CP022438.1\|WP_100107042.1\|2434421_2437046_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP022438.1\|WP_159026777.1\|2430506_2431013_-\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|379275
NZ_CP022438.1\|WP_100107043.1\|2437042_2437459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107055.1\|2450434_2451724_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP022438.1\|WP_159026780.1\|2438578_2438743_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107047.1\|2439875_2440244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107048.1\|2440309_2441755_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP022438.1\|WP_159026778.1\|2431954_2432266_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107038.1\|2431410_2431911_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP022438.1\|WP_100107045.1\|2438306_2438603_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107051.1\|2445623_2446730_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_CP022438.1\|WP_100107052.1\|2446894_2447515_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107041.1\|2433192_2433837_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP022438.1\|WP_100107056.1\|2451858_2453184_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_CP022438.1\|WP_100107040.1\|2432619_2433036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107054.1\|2448489_2450400_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP022438.1\|WP_159026779.1\|2437799_2438108_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP022438.1\|WP_100107049.1\|2441874_2443608_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100107050.1\|2443604_2445527_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP022438.1\|WP_100107053.1\|2447487_2448483_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	8.51831e-21
NZ_CP022438.1\|WP_100107042.1\|2434421_2437046_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.73228e-07
NZ_CP022438.1\|WP_159026777.1\|2430506_2431013_-\|DUF4440-domain-containing-protein	gnl\|CDD\|379275	pfam13577, SnoaL_4, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.13572e-17
NZ_CP022438.1\|WP_100107048.1\|2440309_2441755_+\|sugar-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	1.96307e-119
NZ_CP022438.1\|WP_100107056.1\|2451858_2453184_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP022438.1\|WP_100107038.1\|2431410_2431911_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.01978e-09
NZ_CP022438.1\|WP_100107051.1\|2445623_2446730_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	3.04297e-160
NZ_CP022438.1\|WP_100107054.1\|2448489_2450400_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP022438.1\|WP_100107041.1\|2433192_2433837_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	6.02986e-47
NZ_CP022438.1\|WP_100107055.1\|2450434_2451724_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.28876e-73
NZ_CP022438.1\|WP_159026779.1\|2437799_2438108_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.72997e-18
NZ_CP022438.1\|WP_100107049.1\|2441874_2443608_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.65034e-163

>NZ_CP022438.1|WP_159026780.1|2438578_2438743_+|hypothetical-protein
MAGRPHFLKVWAPELTGQFLDFVKDDWLYELWHGFIFLGPRRGEMAAPLDRGQH
>NZ_CP022438.1|WP_100107045.1|2438306_2438603_+|hypothetical-protein
MAARYYCADSENGDHVDDPSEDTLFMLIDDLNDTDNTFVVIQPAQDDPSWFASVAVLKNGGYEIVRRDTTRHEHDVVVATSTDHIAGDLTKWLAARTS
>NZ_CP022438.1|WP_159026779.1|2437799_2438108_+|IS3-family-transposase
MIGKVHADNYGVYGVRKVWAELKHQGHQVARCTVQRLMRSEGLSGAVRGNKIRTTVPGERAVRAPDLVDRDFVAPAPPADRVRNRTRRGRAGGRPPALDQQH
>NZ_CP022438.1|WP_100107043.1|2437042_2437459_-|hypothetical-protein
MDPVVVAAGTALVGAMATDAWQHARAGVVGLWRRGRLDQAEMVQADLAQARTEVLAAREAGDDTTEEALAGVWRMRMQQLLRDSPELAPELRRLLDETLTPHLTPEEREGVTSIELRAAARDHGRVYQAGRDQHITER
>NZ_CP022438.1|WP_100107042.1|2434421_2437046_-|tetratricopeptide-repeat-protein
MNGGSRGEKRPEVSLRAGAHDGGRIYQAVGDQYIYEGLPVAPASVTNTLPRDTFAFEGRDGELQKLVDAVRHASAPRGPLPVYAIDGMPGVGKTAFAVRAAHLLADAFPDGTLFVNLHAHSAGQLPVEPVDVLGSLLSIAGVAAQYIPAGLDARAAMWRDRLAGKRVLLILDNAAGHHQVEPLLPGTDNCLNLVTSRRRLSALDGAVSISLGTLAPDEAINLLSTLSGRDVSCEEAAADALVRLCGCLPLAVSMLAGRLRHHPSWLLGDLIEDMADAQTRLDELRAEDSAVAATFELSYQDLPDDRKLFFRRLGLHPGDEIDDWAAAALVGVPRRQARRHLAALYDDHLIDELRHGRYRMHDLIRDYTRALADTDGEAGNEEAMGHLFDYYQRTASLADRQLSHTLRTGIPSISGVPSCPDLATRTEALKWMESERANLLACAQRTIQHGQHPRVVRFAEAMAGYLQQAGPWDRAIEIHRAATAAAQRSADPSEQARALIRLATVQYLSGDYPQAREAVNRALGLYRDVSVLSGQASALCHLGIIHKLTNEHEVSTQALERALSLYRHLGDQEGQADALTQLGIVRYWQSDYPGASQLLEQALKLYRDVENLLGQANALHHLGLVRWLLDDYPVAAEVLEKAMALHHDLGNRIGMAEAQNWLGAVWCTTGRYEAAAEAQSEALTVFREMGSRFNESEALYNLGFTLLSAEEHDAAVKYLEEALVVCRCVDSPLGEADVLWALGSAHVRTGDPTLAAELLDQSLTLYREMENSLGEAATLNEIGKLSFASGRHAQALEHHELALSLARSLNSPFEEALALAGIGRHAHYEGETGVAIDHFRNAYAILERIGAAEAKNIQRELADLLPGMLDERGK
>NZ_CP022438.1|WP_100107041.1|2433192_2433837_-|isochorismatase-family-protein
MTENLPGSSRFHTPLTGENAALLLVDHQIGLFTGVRDIEVATLKHNVAALAKAAQVLEIPTVVTTTMADGMWGPLVPELAEVLPAGLEVIDRSTVNAWDDDRVRQAVEATGRKKLIIAGVSIEVCLAFPAISVTAAGYDAYAAIDASGTFSETKRTAGLLRMQQAGVIVTDYATTMVEILADNSHPKGYEVYAALDMPFATLVGQLSTAYAKNG
>NZ_CP022438.1|WP_100107040.1|2432619_2433036_-|hypothetical-protein
MTLWNVTAPTLRTVGNEEVRGTQTWVVQARRNVDAVRQVITRAAGEDAVRHRRGAVTDPSALTATRWTSPNGPLGPTSMCPRSPLSGSLSGGRAHRCPTASISIVTDAVSAIFPFPYGDGLERAADSGQNLDSQVYYQ
>NZ_CP022438.1|WP_159026778.1|2431954_2432266_-|hypothetical-protein
MVHGEADTGVPSVQSRTYVTAALERDDRAECVGIPVADHFDVIDPAHPAWQAVVRRLPAPAADRRGVSAVRAAWCESTGPGDEVMKVGRPLRGRYPGLDRRCG
>NZ_CP022438.1|WP_100107038.1|2431410_2431911_+|MarR-family-transcriptional-regulator
MRRSERKLKDPDLGILSTRLLFSIQKELFETLAEQGHPQLRPQHGAVLGFLDSEGTRATELSRQSGTHKQVIGNLIDELEALEYVERQPDPRDRRAKLIVPTSRGRDQMEKSDAIMAAIEQRHAEAIGERKYATFKGAFREIAAQQLAQFDEAAASRREPRKGTGR
>NZ_CP022438.1|WP_159026777.1|2430506_2431013_-|DUF4440-domain-containing-protein
MKTIRRAAAPVVGVLAGAVATGLLLGGNATATESGSTGDRFAIREVIDRHQMYIDLKDADSYADLYAKDGHYRSPFGSADGRNEIKAMFIDLAEKGFTQGKRHMSGPAMIEVSGTTATARSWYWVAETEAEHAVYATGTYTDKLRKVNGEWEIVQRVQTLDELAPESQ
>NZ_CP022438.1|WP_100107047.1|2439875_2440244_+|hypothetical-protein
MAPGDHSSRRVGGQHRRNGRVSPMRYKLTFVAGLAIGFVLGTRAGRERYEQLKKSARQISQNPAVRNVAESAAMSGREAAGKAYHAVSDKVGDRVPESVAGRVRALRERGSGVEDDWGTSNT
>NZ_CP022438.1|WP_100107048.1|2440309_2441755_+|sugar-kinase
MGIVAGLDSSSGFTRIVVCDADTGAVLRQGYAPHPVEPKATEIDPQAWLLSLGEAATGGLLEGVQAIGVSAQQHGLITLDAQDGLVRPALLGNDKRAQVAAADLIDALGGRQAWAEAVGSVPQSGQPVAKLRWLARAEPEAARRVAAVMQPHDWLVWQLLGRPSRKTTDRGGASGTGYWSAGTGAYRPDLVELALGQQCVLPDVLGPAEAAGTTPEGLLISAGTGETMAAAFGLGVAVGDAVVSLGASGSVMAVHHEALPDPGGMITSFADATGMHLPVVHTLNAVRALRGSAELLGVADLYELSALAMKSTPGSSGLVLLPYLEGERTPELPHTAGTLTGLRRESMKPEHLARASFEGMLCSLADAMDVLRGRGVEVRRVFLLGAAAELPAVQAIAPAIFGAQVVVPQPADYTALGAARQAAWALGAAQGTLTPQAPPAWQGAAAQVLEPGEELPVGQAVRQQYGATRDQVHPGAFTTSP
>NZ_CP022438.1|WP_100107049.1|2441874_2443608_+|ABC-transporter-ATP-binding-protein
MLIRLLRTYLSPYKKPIGLLVALQLLQTSATLYLPTLNADIIDNGVVKGDTGHILALGALMIGVSVVQVLCNIGAVFYGARTASALGRDVRADVFGRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAVLLAVVPVLGICVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKGRFREANEELTDVSLSTGRLMALMFPTVMTVVNVSSVAVVWFGAHRIDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVPPLAPVTELRSRGRLEVRGVDFRYPGAEESVLRGIDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVRDLDPATTARTVGLVPQKPYLFSGTVATNLRYGKPDAGDEELWQALEVAQAADFVRGLEGGLNAPIAQGGTNVSGGQRQRLAIARTLVQRPEIYLFDDSFSALDYATDAALREALARETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGSHHELMQSNETYREIVLSQLTEAEAA
>NZ_CP022438.1|WP_100107050.1|2443604_2445527_+|ABC-transporter-ATP-binding-protein
MSGPGGRMMMGPVERSMDFRGSGKRLLRQLAPERATLWVMLAAGVLSVAFAVVGPKILGRATDLVFAGVVGREMPDGTSKEQAVEGLRQSGDEGMADMLSGVDFVPGHGIDFTAVGDVLLLALAVYVAAGLTMLVATRLSITVINRSVYRMREDVQAKLSRLPLSYFDKAKRGEVLSRATNDIDNISQTLQQTMGQMINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKVGKRSQPQFVAQWKSTGALNAHIEEMYTGHSLVKVFGRQEESAKAFAEQNEALYEAGFKAQFNSGMMQPLMFFISNLNYVLVAVVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAPSAERLERPRGRVSLEQVSFRYEPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSREDLRSGIGMVLQDTWLFGGTIADNIAYGASREVTREEIEDAARAAHADRFIRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEGLLAAGGAYARLYSAQFAEAVVEVE
>NZ_CP022438.1|WP_100107051.1|2445623_2446730_-|RNA-polymerase-sigma-factor
MQTQTLTETHTDAVAAVLATAVEQVPVQGLPAGHPDALPGSAVEEVVETEPPEPPRPTVRNTEGSGPSSDLFRQYLREIGRIPLLSAAEEVELARRVEAGLFAEEKLADTTDPDSQLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVATHLELTSERVSEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDGDAASPVESAAFLLLREHLDAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD
>NZ_CP022438.1|WP_100107052.1|2446894_2447515_+|hypothetical-protein
MPVHESCEYETHVTVRCSGGTGGDRLDAWARAAGLKVTHIVLARGRMVRQPMLTWTGRDGFAAQRAAAEALVARLRADGFDPVRVKIESVPWAPEVRPDGDGYFEHHLKLLLDEDFDREALTALAVRHGAHLSWNARRVAGRGRHERFVTQRCRWVPAQEAGRACDALVAELKDAGHEVLSEEREFVLYDSDLSVDDGWMEEGAAQ
>NZ_CP022438.1|WP_100107053.1|2447487_2448483_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MDGGGGGTVTETGRRPIPGGPEDLAEPVADIRRRTTQLPRTLDVGVEHKGARRQVFDPALKHFTRAFRPLDADAPDASAWQAARRTALETVLTGVSRSGWADSLVLRGSMLMAVWFGQDAREPKDLDFVVVPADWNIEEERTGTMLAEIASAAERAAGERGGPTIDASGAESEYIWTYDRVPGRRMVLPWRAPGLPGGQVQLDFVFNERLPREPVRVAVAGTEVQAASPELSLAWKIQWLLTDGYAQGKDLYDAALLAERHPLRYELLHEVFRLSGEWPYPQQQEVDFADLEQAVGYVEWDHFAADYPQFADDEQVYARRLLTALEPTFTR
>NZ_CP022438.1|WP_100107054.1|2448489_2450400_-|DNA-primase
MAGRINDDDVKAVRDAVPIDAVVSEYLQLRNAGGGNLKGLCPFHDEKSPSFQVSPSKGLFHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAQAGITLRYEEGGYNPTHQRGERIRLVEAHKIAAQFYVEQLDGPEAEIGRKFLAERGFDQAAAQHFGVGYSPAGWDHLTRFLRGKGFSDKELTLSGLSQEGRRGPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPETAIYKKSQVLYGIDLAKKEIARTSTAVVVEGYTDVMACHLAGVTTAIATCGTAFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAAETSIAITPGGMDPCELRLAEGDDSVRGLVESRTPLFEFAIRHVVTRHNLETPAGRAAALDEAAPIVAGIKNIAIQHESAVQLAGILGILDTQFVVKRVAQLARWARDRGGDRGGRGGGPSRTQRPGPAAPAPTAPSGPALNLRSPAHRTERELLKLALQHPGLVSPAFDAYGVDEFTAPPYAAVRRTIEEAGGAEQGTHDTSGYLARVRDAAPDDTVRALVTELAVEAVHARTVDEMYAGVQLVQVRLRAVDRRIRDIQGTMARLGSNADPERYAAVANELWVLQQYAQSLRNQGAAAL
>NZ_CP022438.1|WP_100107055.1|2450434_2451724_-|FAD-dependent-oxidoreductase
MVDAHRTFVIVGGGLAGAKAAETLRAEGFTGRVILIGDERDHPYERPPLSKAFLTGKDERDSVFVHEPGWYAQADIELHLGQTVVSIDRETRSVRLGDGTVVHYDKLLLATGAEPRRLDIPGTGLAGVHHLRRLAHADRLRHVLAALGRDNGHLVIAGAGWIGLEVAAAARGYGAEVTVVEAEATPLHQAIGPELGQFFAELHREHGVRFHFGARLTEIIGQDGMVLAARTDDGEEHPAHEVLAAIGAAPRTALADAAGLDLAGREHGGGVAVDESLRTCDPDIYAAGDVAAARHPLLGIPLRVEHWANALNGGPAAARAMLGQDVTYDRVPYFFSDQYDLGMEYSGWAPPGSYDQVVLRGDVGKREFIAFWLKGRRVLAGMNVNVWDVTAPIQQLIRSRVEVDPQILGDPTLPLTALTDPTGPGDLAG
>NZ_CP022438.1|WP_100107056.1|2451858_2453184_-|deoxyguanosinetriphosphate-triphosphohydrolase
MDGTTSTSGKGNGTGTGSDGYDDSAAERWAAEPDKRRGRTAFQRDRARVLHSSALRRLAGKTQVVTPGTRSHAWDASPRTRLTHSLECAQVGRELGAALGCDPDLVEAACLAHDMGHPPFGHNGEQALNEFAQDCGGFEGNAQSLRLLTRIEPKRFVHAPETGEPVSVGLNLTRATLDAATKYPWPRGGHPTEPGSGKFGVYEDDLPVFEWARLGAPAYRKCLEAQVMDWSDDVAYSVHDFEDGLHAGHIDPNCLLSETERAGIWSVAVGRYVPYDTDPQELSDALDRLVDQVWWPHHYDGSAVAQARLKDAASQLIGRFALAAEGATRQAYGAGGLTRYAAELVVPRSTRNECAVLKAVADRYVMQRAEQEALRADQRVVLAELAQALTARAPEALEPQFHAMFESAADDRARKRVIVDQIANLTDASARTLHARLTTRR

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Crispr_ID: NZ_CP022438_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_5

3191080-3191141

Orphan

Consensus_repeat	Method
AAGCCCGGCGACAAGCCGGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022438_5

>merge|NZ_CP022438|5|3191080-3191141|CRISPRCasFinder
CCGGGCGAGGACAAGCCCGGCGACAAGCCGGGCGAGGACAAGCCCGGTGAGAAGCCGGGCGA

>NZ_CP022438|5|5|3191080-3191141|CRISPRCasFinder
CCGGGCGAGGACAAGCCCGGCGA	CAAGCCGGGCGAGGAC
AAGCCCGGTGAGAAGCCGGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100107554.1\|3186755_3187619_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP022438.1\|WP_100107558.1\|3191449_3194179_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NZ_CP022438.1\|WP_100107565.1\|3202139_3202826_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP022438.1\|WP_100111159.1\|3195402_3196089_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP022438.1\|WP_100111158.1\|3187764_3188202_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP022438.1\|WP_100107559.1\|3194395_3195403_+\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
NZ_CP022438.1\|WP_100111160.1\|3196163_3196985_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|184509
NZ_CP022438.1\|WP_100107555.1\|3188890_3189775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107549.1\|3179057_3182042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107548.1\|3178206_3178521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107562.1\|3198626_3199736_-\|galactokinase	unknown	unknown	gnl\|CDD\|223231
NZ_CP022438.1\|WP_100107553.1\|3186552_3186759_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP022438.1\|WP_159026793.1\|3183972_3184584_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100111157.1\|3178617_3179061_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP022438.1\|WP_100107556.1\|3189958_3190429_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107564.1\|3200697_3201741_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NZ_CP022438.1\|WP_100107560.1\|3197117_3197615_+\|MarR-family-transcriptional-regulator-TamR	unknown	unknown	gnl\|CDD\|197670
NZ_CP022438.1\|WP_100107561.1\|3197573_3198353_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP022438.1\|WP_100107552.1\|3184779_3186426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373949
NZ_CP022438.1\|WP_100107563.1\|3199732_3200701_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100107554.1\|3186755_3187619_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.9216e-08
NZ_CP022438.1\|WP_100107558.1\|3191449_3194179_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NZ_CP022438.1\|WP_100107565.1\|3202139_3202826_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.60437e-35
NZ_CP022438.1\|WP_100111159.1\|3195402_3196089_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.22388e-20
NZ_CP022438.1\|WP_100111158.1\|3187764_3188202_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	4.50229e-16
NZ_CP022438.1\|WP_100111160.1\|3196163_3196985_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|184509	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional.	1.16284e-120
NZ_CP022438.1\|WP_100107559.1\|3194395_3195403_+\|acyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	5.50231e-69
NZ_CP022438.1\|WP_100107562.1\|3198626_3199736_-\|galactokinase	gnl\|CDD\|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	1.8223e-122
NZ_CP022438.1\|WP_100111157.1\|3178617_3179061_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	0.00179047
NZ_CP022438.1\|WP_100107552.1\|3184779_3186426_-\|hypothetical-protein	gnl\|CDD\|373949	pfam15575, Imm49, Immunity protein 49. A predicted immunity protein with an all alpha-helical fold and a conserved proline residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-REAse-1 or Tox-REase-6 families.	7.37545e-35
NZ_CP022438.1\|WP_100107564.1\|3200697_3201741_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	1.11984e-121
NZ_CP022438.1\|WP_100107560.1\|3197117_3197615_+\|MarR-family-transcriptional-regulator-TamR	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.21326e-19
NZ_CP022438.1\|WP_100107561.1\|3197573_3198353_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.18175e-40
NZ_CP022438.1\|WP_100107553.1\|3186552_3186759_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	2.29789e-19
NZ_CP022438.1\|WP_100107563.1\|3199732_3200701_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.17596e-171

>NZ_CP022438.1|WP_100107556.1|3189958_3190429_+|hypothetical-protein
MKRNSSGRMLVHTRNAAMALVALLLLVAGFWSSWGAAQHILLSKGREHGTLAVSRCDDDTCTGAYTPKAPAPDRAEVTIEKSVSVRKGVTLSVVLKPGTGEAVRTGPAGGLYAWVPLGGALLLSALVIGGGLRLTRLAWGAAGVGGALLLASFLAL
>NZ_CP022438.1|WP_100107555.1|3188890_3189775_+|hypothetical-protein
MVSSPHEAMHRIFQEYPGLFSRVSEVLGVPFTAPVSATLLPTDLTEARPVERRIDTLLRIDTEDDETFLLAIEAQGKRDPDKPASWAYYLSFLYTKYRTPPLLLVVCQDRATAEWASRPVPIGPRKWPALTLRPLVVGPHNMPVIIDVAEARKDLALATLAAITHAGDPDIGAILKTLSAALRDAPEAIADPIVELTAQGLGNRPAADQWRNLVAVDLSFYTSPLSEEIRDEGRAEGRAKGLADAILLVLQQRGLAVPDEARERITTCDDTQLMSTWLSRAVTAASTEAIFTAE
>NZ_CP022438.1|WP_100111158.1|3187764_3188202_+|ATP-binding-protein
MNPQITRIESSASVRKFTVLLSPTRRGARLARLLTAAQLTRWGIESEPAVQVVAELAANAALHGRVPGRDFRLDLAVREDGKRLRIEVTDTRGEHLVSRPEPVGLDHASESGRGLLIVEALADRWGVTPGPVPRKTVWADVDLLP
>NZ_CP022438.1|WP_100107554.1|3186755_3187619_-|helix-turn-helix-domain-containing-protein
MTAEVTRDCTADEPDRDVDLEDDSGAVIAAVGRQIRLWREAAGMRAAELGAAIGYGENQVYKVETGKRIPKPEFLDKVDEVLGAGGKLAAMKKDVAEARYPKKVRDLARLEAEAVELGAYGNHNMHGLLQTEEYARALYEMRRPSFSRDQVDRYVAGRMARQEILQRQPLTTLTFVQEEVTIKRPLGGRAVARRQLEHLLGIGQLRNVEIQVMPTDREDHAGMGGQLQLLKFDDGTAVAHWEGQLSNRLTSDPKEVRIIELRYGIIRAQALTPRESLAFIEKALGET
>NZ_CP022438.1|WP_100107553.1|3186552_3186759_-|DUF397-domain-containing-protein
MTGKASGTDDSMLRWVKSSYSSNDGPECVEVAAATGTIHVRDSKNLPGPRLGFTSDAWAEFVTYASED
>NZ_CP022438.1|WP_100107552.1|3184779_3186426_-|hypothetical-protein
MLTAAQAAHLRELAAPYTDNSRTYSLQNLAHTCRRAPEDRWPELVETHFARLRAAGRGDESAAELLSGVHARLLPTDSITPDLVGAMRYARVVADGLVFAYALDQPTTVRILTDPDVERAGLEELGEAAYANLMRVPVEHEEVAIEGRALLHSVYGDSPFVASKALFLSELARQVTGEPLPDAGALVVVPTRHLLAFHPIVDGSVADAINDLAQYALGAYQDGPGALSPRVYWWHRGGLTSLTVIDTETNTFSLQPPPELLGILKGLVRLDRAGRLAGRTAAKEPDIGGLRDTAAEAIARIDQDPSGLGGAFTSTIQLAHAHCAADPDLSHVDSWDAWASAVQLGTALFTGAQPQECHLGGDLVRQLPAVPAEPPADARAWVDAFYAAVVCRQSARIDRLCQVPLAVLRQDDSIDEYVLHWIDTLQTYWAERSMDDVVEKLLATMTTSAPDAVTRAPKDFVNLIDYQPVALFHRLITRDHEAFAEALTEALAHHATYWGDCPAPRAQVALGPLAMASLAYDYGFPVDLEQPYLPTYLLNRERIEKIPG
>NZ_CP022438.1|WP_159026793.1|3183972_3184584_-|hypothetical-protein
MLAPVGVSIEVLIVDWAHIEAAPPDERADLLEEAAFGEETRPNADEGWIWPTRSAADWYASYEFSRTLGSYKPHFWAGERWERLRDFADPQLRGMLDRFASVLFWHGLEYMEDIDAEQVPERSSPWQTSTLMWSSPIEAAELKVLWEGVSPQLEALREPFDRHVARPEGWINDFDSFVTFLEGWNEVVTAAHARGWGIVGLRC
>NZ_CP022438.1|WP_100107549.1|3179057_3182042_+|hypothetical-protein
MSGNIPVDPYEIPHFTGSWCELDLRVKALSGASTKIPTAAGDVHTTFGGLRAYYAAPEAEQLFAVTEPVKSTAQLIGSDLSVIAGALRTYAQDAQPLAKQLDELRAEAEAFRAKVADDDEWREDGDLIDENLERRNKVAEVWAAFQDVELACHNKIVALVDGTPLMKHDGSDKKGMYGYDAEALKQAKSLPWGDAVEESTPGWQVWEHAADFVTGFVVDGVWATVVGLGTLAGFNGWDAAGEAWSGLATLGEGLRYTIIFGIDSPYWTTPEDELPPRLRESRVAIKETGKALLAWDDWDAHPGRAAGAVTFNVLTTVFTGGAGGAASTAGKAGAAARALAVAGKVSRVVDPMTYVFKGAGAGLTKLGDVMAGLKGMGRIEVPPLPEGAIALPPGAYKLPDGTLHLPEGAAMPEGAFAVPKRTVLLPEGTPVPTGAVDLGDGMVQLPRRGEVPAGSVAVPEGTIKVPGGATALPPGTAPAGTGSLFSPEGHLLATDGSLLQHADDAPKATTPDPAAGADVSSPTPPVRQPALVGAGASDDAARLGTGLGDDHIRLGDEAPDTGTFPDRTPGGGAGPSMPTNNLDNGVDGGASRAGDNTPTGGADGHADTPSTGSDGRDVPGGSTVDNGLPDRSAAWNGDGSGSRHGETPGAGGVDDVARTDDALVPSAQDALGGGPLPGGPRPAQVPEPPSSMRQGNNPYGPRGSLTADQIREIQVYRANYEPGYFEKYYTIDGRRLRTVIFDESGFAPPHVIRPTPNHPWIAASDAPPPIPERYFNGDGVSRNRKEVLDEETLEILDEAAARRRSLIDYAMASERHRDMHSGLPDGDPARLDTTYEYRSAAYAQTKASEAYGEAVAEHQVIPEHYNDIVVKETLHGPKNGNDQFDQVYRREDGSFVVVEAKSNVRTPLKPRQLPGGGRAMQGSREYFFDILRMMQSRSRQYPTEGALADELEAALKEGKLDYILVKGKSDGPRYDGYVMEKFDIRKSDEIGENL
>NZ_CP022438.1|WP_100111157.1|3178617_3179061_+|hypothetical-protein
MTAWDIEPQGVQGQLQLTGTRAGSLEKVLTAMIGDLSAAAQAAGTAVPGSAVHPTQVGPVAPGPRPSPLMPPQKAMGPVAAALSQYAEKRSPALKAMADRIQAAVLGAAKATGEYVEGDLASAKEAQDAARQVRLDLLMRDTGGNQR
>NZ_CP022438.1|WP_100107548.1|3178206_3178521_+|hypothetical-protein
MAGAGSDRRSYDTGASNEAQGNIQAVIARLELVIAARDAQVKNAMKDFAADGVADEYHGKELRWYSTSEEVRNIIRLLKTTLEKNDATAQQTLARAKAAVDGIG
>NZ_CP022438.1|WP_100107558.1|3191449_3194179_-|phosphoenolpyruvate-carboxylase
MSSADQTPTASAELRADIRRLGDLLGETLVRQEGPELLDLVERVRALTRTDGEAAAQLLGDTDLETAAKLVRAFSTYFHLANVTEQVHRGHEMREKRAAEGGLLARTADRLKDADPQHLRETVKNLNVRPVFTAHPTEAARRSVLNKLRRIAELLENPGIAADRRRHDLRLAEHIDLIWQTDELRVVRPEPADEARNAIYYLDELHAGAVGDVLEDLAAELERVGVELPPGTRPLTFGTWIGGDRDGNPNVTPAVTWDVLILQHEHGITDAIEVIDYLRGLLSNSIRYAGATDELLASLETDLERLPEISPRYKRLNAEEPYRLKATCIRQKLVNTRERLAKGTPHEEGRDYLGTAELIADLTVVQTSLRAHRGGLFADGRMDRVIRTLSAFGLQLATMDVREHADAHHHALGQLFDRLGEESWRYADMPREYRQKLLAKELRSRRPLAPTPAPLDAAGEKTLGVFHTVKEAFERFGPEVIESYIISMCQGADDVFAAAVLAREAGLIDLHAGWAKIGIVPLLETTDELKAADVILEGMLADPSYRRLVSLRGDVQEVMLGYSDSSKFGGITTSQWEIHRAQRRLRDVAHRHGVRLRLFHGRGGTVGRGGGPSHDAILAQPWGTLEGEIKVTEQGEVISDKYLIPSLARENLELTVAATLQASALHTAPRQSDEALASWDAAMDTVSDAAHAAYRRLVEDPDLPAYFFAATPVDQLAELHLGSRPSRRPDSGAGLDGLRAIPWVFGWTQSRQIVPGWFGVGSGLKALREAGLDTVLTEMHERWHFFRNFLANVEMTLAKTDLRIARHYVDTLVPDNLKHVFETIEAEHALTVSEVLKVTGNDELLGSNPVLQQTFSIRDAYLDPISYLQVALLKRQRDAAERGEEPDPLLARALLLTVNGVAAGLRNTG
>NZ_CP022438.1|WP_100107559.1|3194395_3195403_+|acyl-CoA-desaturase
MTTSPDLDDVPKIPESPLPIATRGGDSKRSIEQITLLLFITVPFLALLAAVPLAWGWGVSWLDLGLLVAMYYIGCHGITIGFHRYFTHGSFKAKRPLRIALAIMGSLAVEGPLVRWVADHRRHHKFSDAEGDPHSPWRFGETVPALMKGLWWAHIGWMFDEEQTPQHKYAPDLIKDPALRRISRDFIYWTVLSLAIPPLVGGLVTMSWWGAFTAFFWGSLVRVALLHHVTWSINSICHAVGKRPFKSRDRSGNVWWLAVLSCGESWHNLHHADPTSARHGVLRGQLDSSARLIRWFEKAGWAYDVRWPQQYRIDARRSDSEAGEARRERGAAKTA
>NZ_CP022438.1|WP_100111159.1|3195402_3196089_+|TetR/AcrR-family-transcriptional-regulator
MDVVASDGSIGSPDKIRTPGGRRARRVRMTGAERREQLLDIGRALFAEKGFEGTSVEEIAAKAGVSKPVVYEHFGGKEGLYAVVVDREMRQLLDMVTGALTAGHPRELLEQAAFALLDYIERYTDGFRILVRDSPVAQSTGTFASLISDIATQVEDILGMEFKNRGFDPKLAPLYAQALVGMVALTGQWWLDARRPKKAEVAAHLVNLAWHGLDGLEQKPRLIGHRKS
>NZ_CP022438.1|WP_100111160.1|3196163_3196985_-|trans-aconitate-2-methyltransferase
MHSAPTWDPEQYLRHAGHRTRPFLDMLARIPTLPSGNRPARIADIGCGPGNVTALLADRWPDARITGFDLSPQMLAQAENEHAGTTPGGGRLDFRPADAAHWTPEEPYDLIVSNAALQWVPNHPESFAAWIEGLVPGGTFAFQVPGNFTSPSHALLAELCETPQWRSRLGGHGRRYVHVLEPADYLGRLADLGCDADAWETTYLQLLGGEDPVLDWVKGTALRPVLTELADDPEARAEFLGQYRDLLRKAYPPGPHGTVFPFRRIFAVGRKVS
>NZ_CP022438.1|WP_100107560.1|3197117_3197615_+|MarR-family-transcriptional-regulator-TamR
MEDEVDRLVAAWRRERPDLDVEPLEVLSRVSRLARHLDRARRIAFSEHQLEPWEFDVLTSLRRAGAPYQLSPGQLLTQTLVTSGTMTNRIDRLAKKNLVERLPDPSDRRGVLVRLTPEGRDRADQALAGLLAQERAILSELSRAQRAELAALLRQLTAPFDNIPG
>NZ_CP022438.1|WP_100107561.1|3197573_3198353_-|response-regulator-transcription-factor
MVRIRVLVVDDHRIFAESLAAALAAEPDVEVAAAGSGPAALRCLERAAAESRRFDVMLVDADLGAASAVPPTAVAVARAVPDGGADGPVDGISLVAGVRSLQPAVRSVVLAQKDDARRAALALQAGASGWVAKDCSLQRLLAVVRGVLRDETHLAPALLTGVLREMTAARKHRTESERLVESLTPREQEVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHSTLAAVALARRAGVGPAELAGDVVERGGQLA
>NZ_CP022438.1|WP_100107562.1|3198626_3199736_-|galactokinase
MITGEGVWAAPGRVNLIGEHTDYNDGFVMPFALPHTTVATVARRDDGVLRLTSADMPGGAVELHVDELAPGGPAGWTDYPAGVVWALREARHAVSGADIHYESTVPTGAGLSSSAALEVVTALALNDLYELGLERWRLARLCRRAENVYVGAPTGIMDQTAAACCTEGHALYLDTRDLSQRQIPFDLAAHGLELLVVDTRVKHSHSDGEYGKRRAGCEAGAAALGVEALRDVPYEGLDHALARLADPEVRPLVRHIVTENHRVERVIAHLEAGEVRAIGPVLTEGHTSLRDDFRISCPELDLVVESALAAGALGARMTGGGFGGSAIVLTETSQAPTVTKSVLAAFETSSLQPPRVFTAIPSAGARRLS
>NZ_CP022438.1|WP_100107563.1|3199732_3200701_-|UDP-glucose-4-epimerase-GalE
MSKKYLVTGGAGYVGSVVAQHLLEAGHRVRVLDDLSTGFREGVPAGAEFVEGRIQDAARWLDASYDAVLHFAAFSQVGESVAEPEKYWANNVGGTMELLAAMRSAGVRTLVFSSTAATYGEPVSTPVTESDPTSPTSPYGASKLAVDHMITGEAAAHGLAAVSLRYFNVAGAYGSCGERHDPESHLIPLVLQVALGRRESISVYGDDYPTPDGTCVRDYIHVADLAEAHLLALDAATAGEHLICNLGNGNGFSVREVIETVRRVTGHPVPEVLAERRGGDPAVLVASAATAQERLGWKPSRADLADIVTDAWAFARRRDNAS
>NZ_CP022438.1|WP_100107564.1|3200697_3201741_-|galactose-1-phosphate-uridylyltransferase
MKKTSTRLADGRELLYYDSRGDAERDAVDHRPLDAVTTTAEIRHDVLLGDSVAIASHRQGRTYHPPADECPLCPSREGSPSEIPAADYEVVVFENRFPSLAGDAGRCEVVCFTSDHDASFADLTEEQAGLVLGAWTDRTAELAGLPQVKQVFCFENRGAEIGVTLGHPHGQIYGYPFITPRTELMLRSLASHRARTGRNLFDDVVAREREEGVRVVLEGEHWIAFVPYAAHWPFEVHLHPKRRVPDLRDLGDAARTEFPQIYLELLRRFDRIFGTGEPPTPYIAAWHQAPFEGEERDAFGLHLELFTIRRTSGKLKFLAGSESGMSVFINDVPPEAAARRLREVASK
>NZ_CP022438.1|WP_100107565.1|3202139_3202826_-|response-regulator-transcription-factor
MGVRLMVVDDHRLLAEALASALKLRGHRVLAAAAPASGAAELVIARSPDVCLLGTATPAEPGAFDPVVRIKRERPQVAVVVLGPVPSPRGIAAAFAAGASGYVRHDERIEGVERAMAKARAGEAVVAPQLLQGAFAELLNPAAQPDDEGQRLLQLLTPREVEVLVRVAEGEDTRLIAVGMGIAPSTARTHVQRVLMKLGVGSRLEAAALAARTGLLERAAYGRPPRPS

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Crispr_ID: NZ_CP022438_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_6

3204685-3204760

Orphan

Consensus_repeat	Method
CCGTAGCCGGGCTCCGCCGGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022438_6

>merge|NZ_CP022438|6|3204685-3204760|CRISPRCasFinder
CCGTAGCCGGGCTCCGCCGGCGGCGGGGCCTGCGGAGGCGTCTGCGGGTAACCGTAGCCGGGCTCCGCCGGCGGCG

>NZ_CP022438|6|6|3204685-3204760|CRISPRCasFinder
CCGTAGCCGGGCTCCGCCGGCGGCG	GGGCCTGCGGAGGCGTCTGCGGGTAA
CCGTAGCCGGGCTCCGCCGGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100107558.1\|3191449_3194179_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NZ_CP022438.1\|WP_100107575.1\|3216423_3218154_+\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224839
NZ_CP022438.1\|WP_100107568.1\|3207112_3208918_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP022438.1\|WP_100107565.1\|3202139_3202826_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP022438.1\|WP_100107569.1\|3208961_3210275_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376607
NZ_CP022438.1\|WP_100111159.1\|3195402_3196089_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP022438.1\|WP_100107567.1\|3205008_3206853_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|370676
NZ_CP022438.1\|WP_100111160.1\|3196163_3196985_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|184509
NZ_CP022438.1\|WP_100107559.1\|3194395_3195403_+\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
NZ_CP022438.1\|WP_100107572.1\|3213984_3214854_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP022438.1\|WP_100107574.1\|3215482_3216361_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP022438.1\|WP_100107562.1\|3198626_3199736_-\|galactokinase	unknown	unknown	gnl\|CDD\|223231
NZ_CP022438.1\|WP_100111161.1\|3212350_3213613_-\|resuscitation-promoting-factor	unknown	unknown	gnl\|CDD\|226111
NZ_CP022438.1\|WP_100107570.1\|3210588_3211497_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|235110
NZ_CP022438.1\|WP_100107563.1\|3199732_3200701_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NZ_CP022438.1\|WP_100107564.1\|3200697_3201741_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NZ_CP022438.1\|WP_100107571.1\|3211493_3212354_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP022438.1\|WP_100107560.1\|3197117_3197615_+\|MarR-family-transcriptional-regulator-TamR	unknown	unknown	gnl\|CDD\|197670
NZ_CP022438.1\|WP_100107561.1\|3197573_3198353_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP022438.1\|WP_100107573.1\|3214887_3215352_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100107558.1\|3191449_3194179_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NZ_CP022438.1\|WP_100107575.1\|3216423_3218154_+\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224839	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].	1.31285e-28
NZ_CP022438.1\|WP_100107568.1\|3207112_3208918_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.65772e-165
NZ_CP022438.1\|WP_100107565.1\|3202139_3202826_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.60437e-35
NZ_CP022438.1\|WP_100107569.1\|3208961_3210275_-\|acyltransferase-family-protein	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	6.06932e-13
NZ_CP022438.1\|WP_100111159.1\|3195402_3196089_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.22388e-20
NZ_CP022438.1\|WP_100107567.1\|3205008_3206853_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	3.90233e-11
NZ_CP022438.1\|WP_100111160.1\|3196163_3196985_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|184509	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional.	1.16284e-120
NZ_CP022438.1\|WP_100107559.1\|3194395_3195403_+\|acyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	5.50231e-69
NZ_CP022438.1\|WP_100107572.1\|3213984_3214854_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.2227e-93
NZ_CP022438.1\|WP_100107574.1\|3215482_3216361_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	3.64984e-109
NZ_CP022438.1\|WP_100107562.1\|3198626_3199736_-\|galactokinase	gnl\|CDD\|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	1.8223e-122
NZ_CP022438.1\|WP_100111161.1\|3212350_3213613_-\|resuscitation-promoting-factor	gnl\|CDD\|226111	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown].	6.16068e-52
NZ_CP022438.1\|WP_100107570.1\|3210588_3211497_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|235110	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	3.65345e-148
NZ_CP022438.1\|WP_100107563.1\|3199732_3200701_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.17596e-171
NZ_CP022438.1\|WP_100107564.1\|3200697_3201741_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	1.11984e-121
NZ_CP022438.1\|WP_100107571.1\|3211493_3212354_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	7.13331e-129
NZ_CP022438.1\|WP_100107560.1\|3197117_3197615_+\|MarR-family-transcriptional-regulator-TamR	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.21326e-19
NZ_CP022438.1\|WP_100107561.1\|3197573_3198353_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.18175e-40
NZ_CP022438.1\|WP_100107573.1\|3214887_3215352_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00549662

>NZ_CP022438.1|WP_100107565.1|3202139_3202826_-|response-regulator-transcription-factor
MGVRLMVVDDHRLLAEALASALKLRGHRVLAAAAPASGAAELVIARSPDVCLLGTATPAEPGAFDPVVRIKRERPQVAVVVLGPVPSPRGIAAAFAAGASGYVRHDERIEGVERAMAKARAGEAVVAPQLLQGAFAELLNPAAQPDDEGQRLLQLLTPREVEVLVRVAEGEDTRLIAVGMGIAPSTARTHVQRVLMKLGVGSRLEAAALAARTGLLERAAYGRPPRPS
>NZ_CP022438.1|WP_100107564.1|3200697_3201741_-|galactose-1-phosphate-uridylyltransferase
MKKTSTRLADGRELLYYDSRGDAERDAVDHRPLDAVTTTAEIRHDVLLGDSVAIASHRQGRTYHPPADECPLCPSREGSPSEIPAADYEVVVFENRFPSLAGDAGRCEVVCFTSDHDASFADLTEEQAGLVLGAWTDRTAELAGLPQVKQVFCFENRGAEIGVTLGHPHGQIYGYPFITPRTELMLRSLASHRARTGRNLFDDVVAREREEGVRVVLEGEHWIAFVPYAAHWPFEVHLHPKRRVPDLRDLGDAARTEFPQIYLELLRRFDRIFGTGEPPTPYIAAWHQAPFEGEERDAFGLHLELFTIRRTSGKLKFLAGSESGMSVFINDVPPEAAARRLREVASK
>NZ_CP022438.1|WP_100107563.1|3199732_3200701_-|UDP-glucose-4-epimerase-GalE
MSKKYLVTGGAGYVGSVVAQHLLEAGHRVRVLDDLSTGFREGVPAGAEFVEGRIQDAARWLDASYDAVLHFAAFSQVGESVAEPEKYWANNVGGTMELLAAMRSAGVRTLVFSSTAATYGEPVSTPVTESDPTSPTSPYGASKLAVDHMITGEAAAHGLAAVSLRYFNVAGAYGSCGERHDPESHLIPLVLQVALGRRESISVYGDDYPTPDGTCVRDYIHVADLAEAHLLALDAATAGEHLICNLGNGNGFSVREVIETVRRVTGHPVPEVLAERRGGDPAVLVASAATAQERLGWKPSRADLADIVTDAWAFARRRDNAS
>NZ_CP022438.1|WP_100107562.1|3198626_3199736_-|galactokinase
MITGEGVWAAPGRVNLIGEHTDYNDGFVMPFALPHTTVATVARRDDGVLRLTSADMPGGAVELHVDELAPGGPAGWTDYPAGVVWALREARHAVSGADIHYESTVPTGAGLSSSAALEVVTALALNDLYELGLERWRLARLCRRAENVYVGAPTGIMDQTAAACCTEGHALYLDTRDLSQRQIPFDLAAHGLELLVVDTRVKHSHSDGEYGKRRAGCEAGAAALGVEALRDVPYEGLDHALARLADPEVRPLVRHIVTENHRVERVIAHLEAGEVRAIGPVLTEGHTSLRDDFRISCPELDLVVESALAAGALGARMTGGGFGGSAIVLTETSQAPTVTKSVLAAFETSSLQPPRVFTAIPSAGARRLS
>NZ_CP022438.1|WP_100107561.1|3197573_3198353_-|response-regulator-transcription-factor
MVRIRVLVVDDHRIFAESLAAALAAEPDVEVAAAGSGPAALRCLERAAAESRRFDVMLVDADLGAASAVPPTAVAVARAVPDGGADGPVDGISLVAGVRSLQPAVRSVVLAQKDDARRAALALQAGASGWVAKDCSLQRLLAVVRGVLRDETHLAPALLTGVLREMTAARKHRTESERLVESLTPREQEVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHSTLAAVALARRAGVGPAELAGDVVERGGQLA
>NZ_CP022438.1|WP_100107560.1|3197117_3197615_+|MarR-family-transcriptional-regulator-TamR
MEDEVDRLVAAWRRERPDLDVEPLEVLSRVSRLARHLDRARRIAFSEHQLEPWEFDVLTSLRRAGAPYQLSPGQLLTQTLVTSGTMTNRIDRLAKKNLVERLPDPSDRRGVLVRLTPEGRDRADQALAGLLAQERAILSELSRAQRAELAALLRQLTAPFDNIPG
>NZ_CP022438.1|WP_100111160.1|3196163_3196985_-|trans-aconitate-2-methyltransferase
MHSAPTWDPEQYLRHAGHRTRPFLDMLARIPTLPSGNRPARIADIGCGPGNVTALLADRWPDARITGFDLSPQMLAQAENEHAGTTPGGGRLDFRPADAAHWTPEEPYDLIVSNAALQWVPNHPESFAAWIEGLVPGGTFAFQVPGNFTSPSHALLAELCETPQWRSRLGGHGRRYVHVLEPADYLGRLADLGCDADAWETTYLQLLGGEDPVLDWVKGTALRPVLTELADDPEARAEFLGQYRDLLRKAYPPGPHGTVFPFRRIFAVGRKVS
>NZ_CP022438.1|WP_100111159.1|3195402_3196089_+|TetR/AcrR-family-transcriptional-regulator
MDVVASDGSIGSPDKIRTPGGRRARRVRMTGAERREQLLDIGRALFAEKGFEGTSVEEIAAKAGVSKPVVYEHFGGKEGLYAVVVDREMRQLLDMVTGALTAGHPRELLEQAAFALLDYIERYTDGFRILVRDSPVAQSTGTFASLISDIATQVEDILGMEFKNRGFDPKLAPLYAQALVGMVALTGQWWLDARRPKKAEVAAHLVNLAWHGLDGLEQKPRLIGHRKS
>NZ_CP022438.1|WP_100107559.1|3194395_3195403_+|acyl-CoA-desaturase
MTTSPDLDDVPKIPESPLPIATRGGDSKRSIEQITLLLFITVPFLALLAAVPLAWGWGVSWLDLGLLVAMYYIGCHGITIGFHRYFTHGSFKAKRPLRIALAIMGSLAVEGPLVRWVADHRRHHKFSDAEGDPHSPWRFGETVPALMKGLWWAHIGWMFDEEQTPQHKYAPDLIKDPALRRISRDFIYWTVLSLAIPPLVGGLVTMSWWGAFTAFFWGSLVRVALLHHVTWSINSICHAVGKRPFKSRDRSGNVWWLAVLSCGESWHNLHHADPTSARHGVLRGQLDSSARLIRWFEKAGWAYDVRWPQQYRIDARRSDSEAGEARRERGAAKTA
>NZ_CP022438.1|WP_100107558.1|3191449_3194179_-|phosphoenolpyruvate-carboxylase
MSSADQTPTASAELRADIRRLGDLLGETLVRQEGPELLDLVERVRALTRTDGEAAAQLLGDTDLETAAKLVRAFSTYFHLANVTEQVHRGHEMREKRAAEGGLLARTADRLKDADPQHLRETVKNLNVRPVFTAHPTEAARRSVLNKLRRIAELLENPGIAADRRRHDLRLAEHIDLIWQTDELRVVRPEPADEARNAIYYLDELHAGAVGDVLEDLAAELERVGVELPPGTRPLTFGTWIGGDRDGNPNVTPAVTWDVLILQHEHGITDAIEVIDYLRGLLSNSIRYAGATDELLASLETDLERLPEISPRYKRLNAEEPYRLKATCIRQKLVNTRERLAKGTPHEEGRDYLGTAELIADLTVVQTSLRAHRGGLFADGRMDRVIRTLSAFGLQLATMDVREHADAHHHALGQLFDRLGEESWRYADMPREYRQKLLAKELRSRRPLAPTPAPLDAAGEKTLGVFHTVKEAFERFGPEVIESYIISMCQGADDVFAAAVLAREAGLIDLHAGWAKIGIVPLLETTDELKAADVILEGMLADPSYRRLVSLRGDVQEVMLGYSDSSKFGGITTSQWEIHRAQRRLRDVAHRHGVRLRLFHGRGGTVGRGGGPSHDAILAQPWGTLEGEIKVTEQGEVISDKYLIPSLARENLELTVAATLQASALHTAPRQSDEALASWDAAMDTVSDAAHAAYRRLVEDPDLPAYFFAATPVDQLAELHLGSRPSRRPDSGAGLDGLRAIPWVFGWTQSRQIVPGWFGVGSGLKALREAGLDTVLTEMHERWHFFRNFLANVEMTLAKTDLRIARHYVDTLVPDNLKHVFETIEAEHALTVSEVLKVTGNDELLGSNPVLQQTFSIRDAYLDPISYLQVALLKRQRDAAERGEEPDPLLARALLLTVNGVAAGLRNTG
>NZ_CP022438.1|WP_100107567.1|3205008_3206853_-|PQQ-binding-like-beta-propeller-repeat-protein
MTQPPSQQPPQPGFGAPQDPQQGAHQPPAQPPQMPPAPQGPPQTPPTTPPGAPAPGYGYPQQPPAQPGYGYPLGAPSGPHGPGGQPPGQPGPYNQPQGPYNQPAGPYNQPGPYGGFPTQPQYPGAPTPGGGSGGGFFKGRTGVIVAAAAAALLVVGGGTWFALSGDDKEDKPNVSKSSDDPKPTGSESVDQGDGSGTGGEGDEDLNAGRKDGEAKVLFLTKNDIDLPRNGADVFGPWVNGDTVVKAMYREVAGYSVTDGQKKWSVPLPADVCSASVQSSSDGKIVVGVKDGLTDKAKCNDLQMIDMNTGKAGWKKSIPKPSGIFASLADYTLSISGKTLAVGGGSNSYGYDVVTGKQLFGTPKSGCEPFAYAGGTKLIAGAACDSDPEKPKHQVQQIDPATGKPQWTYNTPEGWEIDKVYSVSPLVVSITQREPEKKWSIIALTDNGKLRSQIAGGKSDKFQPRCGGAFVIFGQNLEGCTGVAADAKHFYMATETEYGKANELVAFDLDTGKEAWRSPAGGERKMTPLRMEGGNVLVYMQPSYNTGGGVATVAPTGGAPKTLLQHPASTAEIESSFYSPKMAYADGRFFLASGRVSAPNDKAEEETKTMMGFGQ
>NZ_CP022438.1|WP_100107568.1|3207112_3208918_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MAVNLVNVEAVSKVYGTRALLDGVSLGVSEGDRIGVVGRNGDGKTTLIRMLAKLEEPDTGRVTQSGGLRLGVLTQHDSLDPEATIRHEVIGDLADHEWAGNAKIRDVLTGLFDGLDLSGFPQGLDTVIGPLSGGERRRIALAKLLIAEQDLIILDEPTNHLDVEGIAWLAKHLQARRSALVCVTHDRWFLDQVCTRMWDVQRGDVYEYEGGYSDYVFSRAERERIAATEEAKRQNLMRKELAWLRRGAPARTSKPRYRIEAANELIADVPPPRDTSELMKFASARLGRTVFDLEDVTVQAGPKVLLKHLTWQLGPGDRIGLVGVNGAGKTSLLRTLTTAAFSQGEEQPVAGRVVVGRTVRLAYLSQDVTELPPTLRVLEAVQQVRDRVDLGKGREMTAGQLCEQFGFGKEKQWTPVGDLSGGERRRLQLLRLLMDEPNVLFLDEPTNDLDIETLTQLEDVLDGWPGSLVVISHDRFFIERTTDRTFALLGDGTLRMLPRGIDEYLERRARMVEAAAPTPPPAPAGAVKEKSAADARAAKKELQRIERQLDKVSGKETKLHEQIAENATDFEKVAKLDAELRELADERDELEMRWLELAEDA
>NZ_CP022438.1|WP_100107569.1|3208961_3210275_-|acyltransferase-family-protein
MGTTARELAAATPGTRDRYIDLLRVASLGTVVGGHWLMAAVTGDGVGNLLAVVPELQLLTWGLQVMPVFFFVGGFSHALSYRSLRRRYPDRSVYSVFLRVRLQRLLRPTMAFVLVWGAAALVVQLLGGGGGMTGVALRLVAQPLWFIGIYLAMVAFTPPLLRLHERYGWGAFGGLAGAAVAVDVLRFAAHVPFVEFLNFAFVWLAVHQLGFLRADGRIRMPAALAATGLAGAAALVALGPYPLSMVGMPGEKISNMAPPTLALLLHGLWLVGAVELLRGPGTRFVRRARVWRGVVAANGIAMTAFLWHLTAMLGVYGAMIAAGLALPEPATAAWWAQVPLRVAVAAGLTALLVAGFRRFERPAHGSAAPVRGTAPIAAAGITLCLFGVLGLSMVGFGGLLEGRTAMLVAVQVSAPAAVVMALGGWLLVERAGRGSRA
>NZ_CP022438.1|WP_100107570.1|3210588_3211497_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTVRSVTVRVPAKVNVQLAVGGARPDGFHDLANVFLAVGLYDEVTVRPAASLTITCTGPDAEQVPLDRTNLAARAAELLAARHGIAPDVHIHIAKDIPVAGGMAGGSADGAGALLACDTLWGLGSSREELLSICAELGSDVPFSLVGGAALGTGRGERLTELEVGGSFHWVFAVADGGLSTPAVYGEFDRLNEGVSVPDPVASPALLDALRTGDVLALADAVSNDLQPAALSLRPSLADTLAVGAGAGALASLVSGSGPTTAFLVKDEDAAEGVATALRASGTCRAARVAGAPATGARVVAV
>NZ_CP022438.1|WP_100107571.1|3211493_3212354_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MSTTDPDALLGPADIRELAAALGVRPTKQRGQNFVIDANTVRRIVRTAEVKPDDVVVEVGPGLGSLTLGLLEAADRVVAVEIDDVLAGALPSTVAARLPERASRFSLVHSDAMHVQELPGPPPTALVANLPYNVAVPVLLHMLDRFPTIERTLVMVQAEVADRLAARPGNKVYGVPSVKANWYCEVKRAGAIGRNVFWPAPNVDSGLVSLVRRTSPVATTASKAEVFSVVDAAFAQRRKTLRAALAGWAGSPAAAEAALVAAGVSPQARGESLTVEEFARIAEAKK
>NZ_CP022438.1|WP_100111161.1|3212350_3213613_-|resuscitation-promoting-factor
MGEAGRSGPPLPRQSSPPGAADRVRGDADGVDTAEGARRPGRAQARRGARRRRPAERPEALRRLVPQALVVAFLAGGTSAFVADDKAVRLTVDGAPRTTHTFADDVSELLEEEGVDLRAHDVVAPGTDAALDSGDEITVRYGKPLTLTLDGRRERVWTTARTVEAALRELGVRAEGAYISVPRSTPIPRTGLVLDVRTERTVTFTADGRERAIRTNAATVREVLGEAGIVLRGQDTTSVSPTGFPRDGQAVTVLRISGGREVREEPVDFAVARTRDPALFAGTEVVVQQGEPGVRRVTYAVRTVNGVSKKPRRIDDELVREPVTQQVRTGTRQPPSSVRGVDGLNWEALAACESGGRPDAVDASGNHGGLYQFDTATWRSLGGSGRPQDAPAEEQTYRAKKLYVQRGASPWPHCGRRLYR
>NZ_CP022438.1|WP_100107572.1|3213984_3214854_-|TatD-family-hydrolase
MSSKSAPPPLPEPLGVAVADSHTHLDMQEGTVEEALARAAAVGVTTVVQVGCDIKGSRWAAETAAAHREVHAAVALHPNEAPRIVLGDPEGWSRQGARDAGGDAALDDALAEIDRLAALDEVKAVGETGLDHFRTGPEGIAAQERSFRAHIEIAKRHDRALVIHDRDAHADVLRILAEEGAPERTVFHCYSGDAEMAEVCAAAGYFMSFAGNVTFKNAQPLRDALAVAPAELVLVETDAPFLTPAPYRGRPNAPYLIPVTLRAMAAVKGMDEDALAGAIAANTARAFGY
>NZ_CP022438.1|WP_100107573.1|3214887_3215352_-|hypothetical-protein
MSETTHTATVHEAYSFACMRCGHGWEQSYEIEHHTDPAGEDFVVYKTDGRRVPSPLSSPTCGNCGGHVVRIMQPGRVSTVRTLMGLTEPGTAPPVSSVSPAEPVTPVAAPVATAPPPSGPTVDESTADPGTAQTEPEAHHWHLSDLLHPFHHRK
>NZ_CP022438.1|WP_100107574.1|3215482_3216361_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MTGTLVLAGTPIGDVADAPPRLAAELEGADIVAAEDTRRLRRLTQALGVHTRGRVVSYFEGNEAARTPELVAALAGGARVLLVTDAGMPSVSDPGYRLVAAAVEQEIKVTAVPGPSAVLTALALSGLPVDRFCFEGFLPRKASERLGRLREVEGERRTLVYFEAPHRLDDTLAAMAEVFGPGRRAAVCRELTKTYEEVKRGGLGELAAWAAEGVRGEITVVVEGAPETGPQELDADELVRRVRVREEAGERRKEAIAAVAAQAGLPKREVFDAVVAAKNAAGPASGEGKGLS
>NZ_CP022438.1|WP_100107575.1|3216423_3218154_+|phospholipid-carrier-dependent-glycosyltransferase
MTSTAPQPLRGKDDTEQQPPGWEHRLRRFGYTPKPVIGLRDRLVPPYVRPSRQLWTVFGIPPWAVEPLLRVAAWGGPLLVALVAGVLRFWNLGQPHAVIFDETYYAKDAWALINQGYEGSWPKDIDESILDDPSAVTIPTDPGYVVHPPVGKWVIGLGEKMIDFTPFGWRFMVALLGTLSVLMLCRIGRRLFRSTFLGCLAGLLLAVDGLHFVMSRTALLDLVLMFFVLAAFGALLLDRDRARLRLAAALPADDDGTLRPDARIAQTLRLGWRPWRLTAGVMLGLAAGTKWNGLFILAAFGLMTVLWDVGSRRTAGAVRPYLAVLRKDLVPAFLSTVPVAFVTYMASWTGWLATDKGYYRDWASDGGGKDSNWSWLFPDWWRSFWHYENQVFDFHVGLTSGHTYESNAWSWLVLGRPVSYYYEDPKPGVEGCPKDAVDKCASEVLALGTPLLWWAACFAICYIAWRWLFRRDWRAGAILCAILAGWLPWLHYQERTIFLFYAVVFVPFLCLAVAMMIGAILGPPGSDERRRAIGAIGAGVLVLLIVWNFIYFYPIYTGTPIPMDDWRNRMWLDTWV

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Crispr_ID: NZ_CP022438_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_7

3565932-3566114

Orphan

Consensus_repeat	Method
CGGTCGCCGGGCGCGGCCCGGAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP022438_7

>merge|NZ_CP022438|7|3565932-3566114|PILER-CR
CGGTCGGCGGGCGCGGCCCGGAAACCGGGGCAGCCGATTCACCGGCGGCGGGACGTCGCCGGAAACCGGGGCAGCCGGTTCGCCGGAGGCGGGACGTCGCCGGGCGCGGGCCGGAAGTCGAGCGGGGCCGTGACCGGGCGTGGTCCGAGAGGGCGCAGCGCGGTCGCCGGGCGCGGCCCGGGG

>NZ_CP022438|7|1|3565932-3566114|PILER-CR
CGGTCGGCGGGCGCGGCCCGGAA	ACCGGGGCAGCCGATTCACCGGCGGCGGGACGTCGCCGGAAACCGGGGCAGCCGGTTCGCCGGAGGCGGG
ACGTCGCCGGGCGCGGGCCGGAA	GTCGAGCGGGGCCGTGACCGGGCGTGGTCCGAGAGGGCGCAGCG
CGGTCGCCGGGCGCGGCCCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100111191.1\|3560737_3563221_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|379300
NZ_CP022438.1\|WP_100107815.1\|3559618_3560638_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237871
NZ_CP022438.1\|WP_100107817.1\|3563874_3565530_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP022438.1\|WP_100111192.1\|3566740_3568696_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP022438.1\|WP_100107816.1\|3563183_3563747_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP022438.1\|WP_100107819.1\|3569885_3572144_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP022438.1\|WP_100111193.1\|3573033_3574236_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP022438.1\|WP_100107824.1\|3575879_3576809_+\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP022438.1\|WP_100107820.1\|3572223_3572892_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226789
NZ_CP022438.1\|WP_100107823.1\|3574918_3575833_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP022438.1\|WP_100107810.1\|3553955_3554621_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP022438.1\|WP_100107811.1\|3554731_3555742_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP022438.1\|WP_100107822.1\|3574505_3574862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107818.1\|3566151_3566337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107809.1\|3553728_3553995_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107814.1\|3558029_3559004_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP022438.1\|WP_100107821.1\|3574242_3574509_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
NZ_CP022438.1\|WP_100107813.1\|3557190_3558015_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP022438.1\|WP_100107825.1\|3576905_3577691_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP022438.1\|WP_100107812.1\|3556126_3557194_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100111191.1\|3560737_3563221_+\|DNA-binding-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	9.11504e-42
NZ_CP022438.1\|WP_100107815.1\|3559618_3560638_-\|hypothetical-protein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	0.000273825
NZ_CP022438.1\|WP_100107817.1\|3563874_3565530_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	5.31909e-108
NZ_CP022438.1\|WP_100111192.1\|3566740_3568696_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	5.09607e-66
NZ_CP022438.1\|WP_100107816.1\|3563183_3563747_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.53185e-24
NZ_CP022438.1\|WP_100107812.1\|3556126_3557194_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	6.64839e-78
NZ_CP022438.1\|WP_100111193.1\|3573033_3574236_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.19337e-81
NZ_CP022438.1\|WP_100107824.1\|3575879_3576809_+\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	9.70873e-162
NZ_CP022438.1\|WP_100107820.1\|3572223_3572892_+\|hypothetical-protein	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	2.33812e-41
NZ_CP022438.1\|WP_100107823.1\|3574918_3575833_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.58046e-67
NZ_CP022438.1\|WP_100107810.1\|3553955_3554621_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	3.2089e-22
NZ_CP022438.1\|WP_100107811.1\|3554731_3555742_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.56455e-84
NZ_CP022438.1\|WP_100107814.1\|3558029_3559004_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.18021e-71
NZ_CP022438.1\|WP_100107821.1\|3574242_3574509_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	7.45425e-35
NZ_CP022438.1\|WP_100107813.1\|3557190_3558015_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.62238e-133
NZ_CP022438.1\|WP_100107825.1\|3576905_3577691_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.69314e-27
NZ_CP022438.1\|WP_100107819.1\|3569885_3572144_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP022438.1|WP_100107817.1|3563874_3565530_+|DEAD/DEAH-box-helicase
MNGPLIVQSDKTLLLEVDHEQADACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDVAETMARYGRLTLSKHPTHGLVLTTTDRPVLEEILRSRKIQPLVGNRIDPDSVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHRIDLDESGWALRPYQKQAVEGFWHGGSGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELVKRTTLTEDEIGEYSGTKKEIRPVTIATYQVLTTKRKGIYPHLELFDSRDWGLVVYDEVHLLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPADCVEVRVNLSDSERLAYATAEQEEKYRYCATTATKRRVTEQLVHKHAGQQILVIGQYIDQLDELGEHLDAPVIKGETPNAQREKLFDAFRTGEISVLVVSKVANFSIDLPEATIAIQVSGTFGSRQEEAQRLGRVLRPKADGHKAHFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIVDADDLLAGEDPVH
>NZ_CP022438.1|WP_100107816.1|3563183_3563747_-|VanZ-family-protein
MNTDARSRSEWGRTVLRAGLVVCAFAALVLFSAVLARLTLAPSHASEGVASANMRPGASLRQYVTGYTFLAAAKQIGGNLLLGMPFGVLLPVLVPRSLRLLRVMVLTIVVMALVELAQGAIVTGRAFDVDDVILNTTGALTGYILLGRRLGRAWRRRRGEAEQPDEPAAGSSGWRLRWRRRRVPPRP
>NZ_CP022438.1|WP_100111191.1|3560737_3563221_+|DNA-binding-protein
MPEGSGGSPRTLAEALRARDDEELAALLRARPDLLSPVPNDVSQLATRAGTRASVVRALERLDRFALQTAEALAVATDPAPYGELLALMTGDDGDTTTEAALPQALETLRRQALVWGGDDRLRLVRTARELLAPSPTRPSPTGLGPTVTEATAGMSPGRLQEILAVAGLGTTHDPVSAVAALTSLFTDRTRMAALLDTAPSDALAVLDRLVWGPPYGEVTADPTPPVRWLRDHGLLLPASARTVVLPREVALHLRAGRAHRTPEPVPPAVVPAAEHRPQIVDSTAAGQAFTALTTVEDLLKDWHEGGPAVLRSGGLAVRDLKRTAAALDTSEQLAAFWLELAYSTGLLASDGEAAERYAPTPAYDEWLELPPAERWGELAVAWLTATRTPGLVGSQDAKGRTLSALGPELDRSAAVEVRHRVLELAAGLPHGAAPDPETLLSRLRWERPLRGDTAGTGKDLRARVATWTLSEAELLGVTGRGALSTHGRALLDREPVDGDGGKPADGEALADRRARAVKALAPLLPEPLDHVLLQADLTAVAPGPLERPLAETLAVLADVESKGGATVYRFTPASVRRALDAGKAASDLHTFLATHSRTPVPQPLSYLIDDVARRHGHLRVGAASAYVRCDDDAVLGEILADKRSQGLGLRRLAPTVLAAQADPKALLEGLRAMGYAPAAESAEGDVLITRAHARRTPPRTAPSPAPEGPPVPDGTLLGAAVKAIRAGDMAATVARKPAAEQVGPRPGALPRTTSAETLATVQAAALTGSTLWIGYVNAEGTASQRVIAPVRVEGGFVTAYDHTADEVRTYPLHRITGVAELADDAT
>NZ_CP022438.1|WP_100107815.1|3559618_3560638_-|hypothetical-protein
MGIESDQLVYDYLSRVGDLAQQAQLPSGTRMRLVSTLRSEIEKQRSKVGGDSPAGVRRILGRLGTPDEVVASAVSDDGGSPGPGPAATVTEPEREPAPPPPPAAALPRQRGWRRVPRPRNADAPPVPAPRAAASPPHLAGMDELGPSGSEPDWWRIDPGAMGASDGVAGFVGGVEIPEILKPPPPVSSEDEEPEAEEEAGPDRRRRRLLPRLLRRRAAAAPAEPAPRAGFGSPVLLLAAALLVAGAALGQLIALGLGWLLAYASRRLSHTEAKLAVLGIPGTAAAAGALWLWGRVNGHWGEAISEGGIRDALSGTWPWVLRAAAVGSAVFLVWRARRTR
>NZ_CP022438.1|WP_100107814.1|3558029_3559004_+|iron-siderophore-ABC-transporter-substrate-binding-protein
MNNTLGRRGLLAGSLALTAAVALSGCGTKNDADSSDSSKAGGTHKVKTAMGDVEVPDAPKRVVVLDTAELDSAITLGVKPVGATHTGTASGFLNYLPKDKLEGITDVGEMMTPNLEAIAALKPDLILTSKIRHGDKYAELKKIAPTVMTETTGLPWKENFQLHADALGKKTEAQKAVADYEAHAGKVTAALGGKEKAATTKVNVVRFVEGADIRIYGKQNYISTILADVGLGRPAITDKAKDGFSYDVSPEKIDLADTDVVFHSTYGDPEKAKQKQTLDSALWKGMKAAKNDKAFGVDDELWIQGIGYTAANEILDELQGHLAG
>NZ_CP022438.1|WP_100107813.1|3557190_3558015_+|ABC-transporter-ATP-binding-protein
MSRLTARELTLAYDDRTVVHELDLAVPDGQVTVIVGPNACGKSTTLRALGRLLKPKGGAVLLDGAELAKIPTKKIARSIGLLPQSPVAPEAITVVDLVTRGRQPHQHWWQQWSQEDERAVTDAMERTDVTALADRPVDELSGGQRQRVWIAMALAQETDLLLLDEPTTFLDIAHQVEVLDLVRQLNHERGRTVVAVLHDLNQAARYADHLVAMKAGRIVAEGHPDDVVNAELVREVFGMESVVVPDPVTGSPLVVPGAPYSPAPQDPTPAPQSV
>NZ_CP022438.1|WP_100107812.1|3556126_3557194_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSADTVTTVRPAGYGLVRTGRRGSFLLHRRAAGVALGLAATLAAACVAYLCVGESFVAPGEVLKVVFGQPSPDELVVGTLRLPRMVLGLLVGAAFGVAGALIQTVARNPLASPDIIGISQGASAVTVGALTFGVTSYTVLPYLSVTGGILAAALVYVFAWRGGLHATRFVLIGIGFAIALRSITTLFMTKGDYLVAQQAQIWMTGSLNGRGWEEAAPLGWTLLALVPAVLWAARAQRTVSMDDDTATALGVRLGRVRLGLVLLGVVLASIATGAAGPVDFVALLAPQIARRMTRTAQIPLLCSALLGAVIVVLADLAARRMFSPTELPVGVLTAAIGAPYLIWLIIRSRTAGGTS
>NZ_CP022438.1|WP_100107811.1|3554731_3555742_+|iron-ABC-transporter-permease
MSARRALAARRIGWTAAAVAALVFAVLLSLAVGARPVAPSAVLDAVLNGGDSADAEVVRELRVPRTLIGLMVGAALALAGTALQGITRNPIADPGILGISQGASVGVVLAIAFAGVHTLAGYVWFAFAGAAIASVAVYAIAARGRGGATPVKLALSGAAINALLVSVTMGVLTTKAAALDEFRFWQVGSVAGRDAEVVDQIWPFLLVGAVLVMAVARGLDALALGEDVAKGLGQNVATVRIVGGVGATVLTGAGVAAAGPIAFIGLAVPHIARAIVGSDHRWVLPMAALIGPVMLLVSDVIGRIVFPPSEVPAGVMTALIGVPFLVALVRRKAVPA
>NZ_CP022438.1|WP_100107810.1|3553955_3554621_-|HAD-family-hydrolase
MAPHPSPRPPTAGPTVGFDLDMTLIDSRPGIHAAYRALSAETGVWIDADLAVTRLGPPLEQELAHWFPDGQIQEMGDRYREIYPVHAIGPTSAMPGAREAVAAVQELGGRAIVVTAKHEPNAVLHLAHLGIAPDETIGRLWAEAKAEALREHGASVYVGDHLGDVRGARVAGALSVAVPTGPCDAHELRAAGADVVLEDLTAFPQWLRSYSADRADRLDLA
>NZ_CP022438.1|WP_100107809.1|3553728_3553995_+|hypothetical-protein
MTATPQAAAPAPGDGLVRAGAIVFIVGAVATLVTVAPLFLGTDPFPTVAYAVSMLMGVGFLVAAAGVLRSIAAQRRQARSSRSARSAL
>NZ_CP022438.1|WP_100107818.1|3566151_3566337_-|hypothetical-protein
MTTATLTPGTHPHHGAAASGAGTRPQHRVGSALRAVKVLAGAVFSVAVLGEYAEEAGVRRR
>NZ_CP022438.1|WP_100111192.1|3566740_3568696_+|AAA-family-ATPase
MREDVQSLDIKDVTANWVNAAVLQSQIEDRIKALADLSHTPLFFGRLDYLPTTQDGRRFYIGRRHVHDAGGDPMVIDWRAPVSQPFYRASRKDPQDVGLRRRFGYTAGDLTAYEDEHLTDPSEAEQTSKLLQAEIERPRVGPMRDIVATIQPEQDEIVRSGLSGTVCVQGGPGTGKTAVGLHRVAYLLYAHRERLARTGTLVIGPNRSFLHYIEQVLPALGELEVKQSTVDDLVAHVDVRGEDTAAAAVVKGDARMAQVLRRAVRSHVTIPTEPVVVVRGSRRWRVPAYQLEEIVRELLDRDIRYGAARDALPQRIAHTVLVLMEQSGEAPDDRVQDSVARNAAVKAAVRAIWPPVDPAKVVLRLLSDAEFLAEHAEGLLSAGEQATILFAKPPRSVKSAKWSAADAVLIDEATDLVRRTQSLGHVVLDEAQDLSPMQYRAVGRRCSTGSATVLGDLAQGTTPWATASWTEALSHLGKPEAAVEELTAGFRVPREVIAYASRLLPHMSPGLAAVSSVRETPGSLDVRSVLDDLDGAVVAACAESLRHEGSMGLIAADARVPALASALASAGLPYLSPGEETTPESRLTLVPASLAKGLEYDYVVLDEPSSIVAAEPDLRTGLRRLYVALTRAVSGLTVLHARPLPSELSWP
>NZ_CP022438.1|WP_100107819.1|3569885_3572144_+|copper-translocating-P-type-ATPase
MPQSTTTTEPRSVELVIGGMTCASCAARIEKKLNRMDGVEATVNYATEKAKVTFAEGVQVADLIGTVEATGYTAAEPAPPPPPPQAQARDDGKADEELRPLRQRLITAVVLAVPVIATAMVPALQIEYWQWLSLTLAAPVVTYAAWPFHRAAWTNAKHGAATMDTLISVGTSAAFLWSLWALFFGTAGTPGMTHPFEFTIARSDGAGNIYLEAAAGVTAFILAGRYFEARSKRKAGAALKALLELGAKEVTVLRGDRQETIPTAQLQVGDRFLVRPGEKIATDGTVVEGSSAVDASMLTGESVPVEVSVGDTVTGATLNAGGRLVVEATRVGADTQLARMAKLVEDAQNGKAAAQRLADRISAVFVPVVIALALGTLGFWLGNGSGLTAAFTAAVAVLIIACPCALGLATPTALMVGTGRGAQLGILIKGPEVLESTRKVDTIVLDKTGTVTTGRMTLLAVHTADTTTETEVLRLAGALEHASEHPIARAVATGAMDKVGALPAPEDFANVPGLGVQGIVDGHAVLVGREKLLQEWAMELPADLVRARQDAEAAGRTAIAVAWDGQARAVLEVADAVKESSAEAIRRLRTLGLTPILLTGDNQAVAEAVAAEVGIDEVIAEVMPEDKVDVVKKLQAEGRSVAMVGDGVNDAAALAQADLGLAMGTGTDAAIEAGDLTLVRGDLNAAADAIRLSRRTLGTIRSNLFWAFAYNVAALPLAAAGLLNPMIAGAAMAFSSVFVVGNSLRLRGFKAA
>NZ_CP022438.1|WP_100107820.1|3572223_3572892_+|hypothetical-protein
MAAVPQHPAHEDLRSRWLRALLAARDSEDCAIDPYAYADNLLARWAEPQRRYHTTDHLVAVLDRIDELEQYADDPALVRLAAWFHDAVYLPDRSANEERSARLAERALPEAGVSDGATAEVARLVRLTVTHDPDAADRNGQVLCDADLAVLAAAPDAYAAYAAAVREEYAFVPEEAFRDGRAGVLRQLLGLPYLFRTPHGQREWEERARHNITVELELLAAS
>NZ_CP022438.1|WP_100111193.1|3573033_3574236_+|MFS-transporter
MPLAVYILGLSVFALGTSEFMLSGLLPPIAADMDVSIPRAGLLTSAFAVGMVVGAPLLAVATLRLPRRTTLVTLISVFGLGQVAGALAPTYEVLFASRLISALACAGFWAVGAAVAIAMVPVNQRARAMAVMIGGLSIANVLGVPAGAFLGEQLGWRSAFWAVGAASAVALVGVLTRIPYIPLPERKPQLRQELTIYRDRQVWLAVAITALAAGGVFCLFTYLSPLLTDVAGLDAGWVPTVLALFGIGALAGSTIGGRVADAHLFGVMLGGIAASAVLLTALALFSSYAAVAVALSFLLGFSSFFTAPALNARMFNVAGAAPTLAGATTTAAFNLGNTGGPWLGGVVIDADLGFASTAWAGAAMMVVAIAVVMVALRLHGRSRVVARSVAGDRSVRTEHV
>NZ_CP022438.1|WP_100107821.1|3574242_3574509_-|DUF4031-domain-containing-protein
MTVYIDPPTWPGHGRMWSHLVSDVSFEELHAFAAKIGCPSRAFERDHYDVPSHRYADAVAAGAVEVSSRDVVRLLTAAGLRRPKGRQV
>NZ_CP022438.1|WP_100107822.1|3574505_3574862_-|hypothetical-protein
MDDSNPLEKALHTARALVLADLAARAVAEATVVSMVEDAVAHRRWWVEQWPEGVAYVAGLVAQDVQDALLEKHGRWPLCPVCDAGEPHALEVEPELGPDPHWVCTKAGVVVAPIGGLR
>NZ_CP022438.1|WP_100107823.1|3574918_3575833_+|MurR/RpiR-family-transcriptional-regulator
MTNPVKEIFIGDAPAPAALAAKVRTLSPSMTRSMQRVAEAVADDPAGCAALTVTGLAELTGTSEATVVRTARLLGYPGYRDLRLALAGLAAHQESGRAPAITTDIAVDDPIADVVAKLAYDEQQTLADTAAGLDTVQLGAAVSAAATARRIDIYGVGASSLVGMDLAQKLLRIGLIAHAHADPHLAVTNAVQLRSGDVAIAITHSGSTGDVIEPLRVAFDRGATTIAITGRPDGPVSQYADHILTTSTARESELRPAAMSSRTSQLLVVDCLFIGVAQRTYESAAPALAASYEALAHRHNPRTR
>NZ_CP022438.1|WP_100107824.1|3575879_3576809_+|N-acetylmuramic-acid-6-phosphate-etherase
MTSTYGELRAQLASLTTEAFRPELADIDRLPTLEIARLMNGEDETVPAAVAAQLPAIAAAIDGTAERMARGGRLIYAGAGTAGRLGVLDASECPPTFNTEPSEVLGLIAGGPTAMVEAVEGAEDSKEFAAADLDGLELTADDTVVGISASGRTPYAIGAVEHARGLGALTIGLSCNADSALAAAADHGIEVVTGPELLTGSTRLKAGTAQKLVLNMISTITMIRLGKTYGNLMVDVRASNDKLRARSRRIVALATGASDEEIESALEATDGEVKNAILVILGGVDAPTASTLLARSSGHLRAALLATQE
>NZ_CP022438.1|WP_100107825.1|3576905_3577691_+|Crp/Fnr-family-transcriptional-regulator
MVRQPEGSMERIPVEDVRAFARTYRGAWPTPSFLAQLDAAELDTVATAGTVVRFARSETLIREGDDGSDVYLLLTSTAKVSARTDGGGRALLAVRVAGDAVGELAALDGAARTATVEVCGRDPLVALRLERGAFLRTMEALPAVSLTLTASVARKLRTATRRRVDYTGSSSRVKLARVLVEMAEDYGRLSHGNSVVIGVDLTQVEWGALIGASESTAYRTMRALRELGLVDPGARRLVVRDLPGLRDVAYPASCTPPYPVS

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Crispr_ID: NZ_CP022438_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_8

3696849-3696985

Orphan

Consensus_repeat	Method
AACCCCGAACGGGCTCGGGCGGAGCCCGGCACGGGTCCGGGGCGGAGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022438_8

>merge|NZ_CP022438|8|3696849-3696985|CRISPRCasFinder
AACCCCGAACGGGCTCGGGCGGAGCCCGGCACGGGTCCGGGGCGGAGCCCGGTAGGGGCCGGGGCGAAGCCCCCAAACCGCCGCGCGAACCCCGAACGGGCTCGGGCGGAGCCCGGCACGGGTCCGGAGCGGAGCCC

>NZ_CP022438|8|7|3696849-3696985|CRISPRCasFinder
AACCCCGAACGGGCTCGGGCGGAGCCCGGCACGGGTCCGGGGCGGAGCCC	GGTAGGGGCCGGGGCGAAGCCCCCAAACCGCCGCGCG
AACCCCGAACGGGCTCGGGCGGAGCCCGGCACGGGTCCGGAGCGGAGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100107924.1\|3702785_3703211_+\|SseB-family-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100111210.1\|3691540_3691960_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239645
NZ_CP022438.1\|WP_100107917.1\|3694442_3695516_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NZ_CP022438.1\|WP_100111211.1\|3701068_3702628_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP022438.1\|WP_100111209.1\|3690236_3691544_+\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377493
NZ_CP022438.1\|WP_100107925.1\|3703207_3703855_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107921.1\|3698932_3699277_+\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376835
NZ_CP022438.1\|WP_100107927.1\|3708564_3708960_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379731
NZ_CP022438.1\|WP_100107922.1\|3699298_3699637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107916.1\|3693450_3694446_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|273992
NZ_CP022438.1\|WP_100107923.1\|3699820_3700657_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100107912.1\|3685875_3686793_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP022438.1\|WP_100107918.1\|3695523_3696300_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184587
NZ_CP022438.1\|WP_100107915.1\|3692222_3693356_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
NZ_CP022438.1\|WP_100107913.1\|3686789_3687737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378925
NZ_CP022438.1\|WP_100107920.1\|3698118_3698739_-\|DUF47-domain-containing-protein	unknown	unknown	gnl\|CDD\|224310
NZ_CP022438.1\|WP_100107919.1\|3697114_3698113_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP022438.1\|WP_100107914.1\|3687949_3690178_+\|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl\|CDD\|235469
NZ_CP022438.1\|WP_100107926.1\|3703882_3708559_+\|type-IV-secretion-protein-Rhs	unknown	unknown	gnl\|CDD\|225750
NZ_CP022438.1\|WP_100107911.1\|3685483_3685879_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100111210.1\|3691540_3691960_+\|NUDIX-hydrolase	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	4.10206e-44
NZ_CP022438.1\|WP_100107917.1\|3694442_3695516_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.43991e-84
NZ_CP022438.1\|WP_100111211.1\|3701068_3702628_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	7.10763e-36
NZ_CP022438.1\|WP_100111209.1\|3690236_3691544_+\|CHAD-domain-containing-protein	gnl\|CDD\|377493	pfam05235, CHAD, CHAD domain. The CHAD domain is an alpha-helical domain functionally associated with the pfam01928 domains. It has conserved histidines that may chelate metals.	7.21479e-07
NZ_CP022438.1\|WP_100107921.1\|3698932_3699277_+\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	1.71259e-32
NZ_CP022438.1\|WP_100107927.1\|3708564_3708960_+\|hypothetical-protein	gnl\|CDD\|379731	pfam15585, Imm7, Immunity protein 7. A predicted immunity protein with an alpha+beta fold and a conserved GxaG motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Tox-REase-3 domain.	2.53186e-55
NZ_CP022438.1\|WP_100107916.1\|3693450_3694446_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	4.69482e-88
NZ_CP022438.1\|WP_100107912.1\|3685875_3686793_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.2986e-67
NZ_CP022438.1\|WP_100107918.1\|3695523_3696300_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184587	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional.	0
NZ_CP022438.1\|WP_100107915.1\|3692222_3693356_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	1.36866e-82
NZ_CP022438.1\|WP_100107913.1\|3686789_3687737_+\|hypothetical-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.01751e-05
NZ_CP022438.1\|WP_100107920.1\|3698118_3698739_-\|DUF47-domain-containing-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	4.62476e-31
NZ_CP022438.1\|WP_100107919.1\|3697114_3698113_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	2.32277e-100
NZ_CP022438.1\|WP_100107914.1\|3687949_3690178_+\|RNA-degradosome-polyphosphate-kinase	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP022438.1\|WP_100107926.1\|3703882_3708559_+\|type-IV-secretion-protein-Rhs	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	3.73185e-44
NZ_CP022438.1\|WP_100107911.1\|3685483_3685879_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	2.12807e-29

>NZ_CP022438.1|WP_100107918.1|3695523_3696300_+|phosphate-ABC-transporter-ATP-binding-protein
MAKRIDVSGLTAYYGSHKAIDDISMTVEPRSVTAFIGPSGCGKSTFLRTLNRMHEVTPGGRVEGKVMLDDEDLYGSNVDPVAVRRTVGMVFQRPNPFPTMSIFDNVAAGLRLNGSYKKNQLAEVVERSLKGANLWNEVKDRLNKPGSGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLIGELKERFTIVIVTHNMQQAARVSDRTAFFNLAAVGQPGKLIEIDDTERIFANPSVQATEDYISGRFG
>NZ_CP022438.1|WP_100107917.1|3694442_3695516_+|phosphate-ABC-transporter-permease-PstA
MSQTLQDKRPVATVRTAPLSHARMPRWAPAAIAVGSIAAGCGIGIAAGWHSRVQWGMIAALVFVLATYVITTKVENSRQAKDRVATSLVWVCFVLAVVPLFSLAWVTVEEGMEVVDGYFLSHSMNGVLEVQPGGGIYHALLGTIEQVLIAAVIAAPIGLLTAIYLVEYGRGKLAKAVTFFVDVMTGIPSIVAGLFVLATWNLMLGFGPSGFAGGLALAILMMPVVVRSTEEMLKLVPNELREASLALGVPKWRTILKVVLPTAIGGITTGVMLAVARVTGETAPVLLLVFGTQLINPNPFEGAQSSLPLYVYQQYAVGTDASIARAWGAALVLIAFVMILNLVARGIARWKAPKTGK
>NZ_CP022438.1|WP_100107916.1|3693450_3694446_+|phosphate-ABC-transporter-permease-subunit-PstC
MDTTTTASAPPPRAPEAERTMRGKPRPGDRIFLGLSRGAGISLLVIMAAIAGFLAYRAGIAISKDDANFLTESEWNPAGNPPVFGIAVLAFGTIVSSVIAMIIAVPVAIGIALFISHYAPRKIAAPLAYVVDLLAAVPSIIYGLWGALFLVPYLDGLNSWLDEYLGWTYIFEKTGEGVARNLFTVGILLAIMILPIITNVTREVFLQVPKMHEEAALALGATRWEVIRMSVLPFGRSGIISASMLGLGRALGETMAVAVVLSPSFVISGHLLDPGGGTFAQNIAAKFNEADGFGRDALIASGLVLFVITLLVNGAARAIIARRKEYSGANA
>NZ_CP022438.1|WP_100107915.1|3692222_3693356_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKLQRKNGLRATALGALAISGALVLTACGSDNNTGADTSGEKTSAASNIKCDEAKGQILAAGSSAQKNAVDVWVNAFQAACSGVEVNYQAIGSGGGITKFNQGQVAFAGSDSALKPEEVEESKKICKGGQGINLPMVGGPVAIGYNLEGVDNLVLDATTIAKIFDSKITKWNDPAIAKLNPDAKLPDSSIQAFHRSDESGTTQNLHKYLSEAAPADWKHDPKSKSWLAPGGQAANGSSGVASQVKQTQGSIGYFELSYATSQSISTVKLDTGAAAPVEATTENASKAIAAAKIKGTGKDLALSLDYKTKAEGAYPIILVTYEIACDKGNKAETLPTLKAFLNYTASEEGQKVLSDAGYAPLPAEIATKVREIVPTLS
>NZ_CP022438.1|WP_100111210.1|3691540_3691960_+|NUDIX-hydrolase
MNGRDTVLAAGCVLWRRSPYGHDGLEICLVHRPKYDDWSHPKGKLKRGEDTLAAALREVLEETGHRCVPGARLPTVRYLANGRPKQVTYWAAEATTGSFASGKEVDRIVWLPPAAARNRLTQPRDRTLVDALLQALNRA
>NZ_CP022438.1|WP_100111209.1|3690236_3691544_+|CHAD-domain-containing-protein
MAHYLHAQAAEFLRSLRRHGESGAETAAVAESARALRAASRRISGTLHTFRPLLDAAWADGLRAELAWLSTTLAQEHACTSRLSRLLDALSRLSGTSPLPPARGESLPLRGPGAAAGGGDLSAPARRGSHGNGHAAVRTASGPSAAGDTTVATGADHSGPAPGTPPGASNNGAPTAGRFDGRSGSAAGPGAADDTPGPDAAVGDGPEGRTRSARGAGRGGGGALDVGAARAGALLERQLTLARTRAHSAALQALGSSRFHAVADAVALLASELPLGPAAAGPAAETLSLPAAAAERRLLAAVAELPLGRAAHPYNAEALFSGLAAAAAGEAQDAPWHEVRRLLRLHRYAQEVLHPGADPVLCHAGVVLDRHRDAAEAAAAAAAAARTPRIAPATAYALGVLHADQRHEVEAARFAFQQEWHHATAPHATTAVTAP
>NZ_CP022438.1|WP_100107914.1|3687949_3690178_+|RNA-degradosome-polyphosphate-kinase
MSQQPAEVPVQHPQPSVASIAAHRPHTVAATVSDLEPDLDSDLDSYEEVESRLGSELPQGRFLDRERSWLAFNERVLELAEDPATPLLERANFLAIFASNLDEFFMVRVAGLKRRIATGVATRSASGLQPREVLDLIWTRSRELMARHAACYQQDVAPSLADEGIHLIRWPELTEKEQARLFTLFRQQIFPVLTPLAVDPAHPFPYISGLSLNLAVVVRNPVSGHRHFARVKVPPLLSRFLEASPQRYVPLEDVIAAHLEELFPGMEVLAHHMFRVTRNEDLEVEEDDAENLLQALEKELMRRRFGPPVRLEVEESIDPYVLDLLVRELKVSDAEVYPLPGPLDLTGLFGISALDRPELKFPKFVAGTHRDLSEVESASAPDIFMALRERDVLLHHPYDSFSTSVQAFLEQAAADPDVLAIKQTLYRTSGDSPIVDALIDAAESGKQVLVLVEIKARFDEQANIKWARKLEESGCHVVYGLVGLKTHCKLSLVVRQEGETLRRYSHVGTGNYHPKTARLYEDLGLLTADPQVGADLSDLFNRLSGYSRRETYRRLLVAPKSLRDGLIARINKEIVHHRAGRPAYVRIKVNSMVDEAIIDACYRAATAGVPVDIWVRGICAIRPGVTGLSENIRVRSVLGRFLEHSRIFAFGNGGEPEVWFGSADMMHRNLDRRIEALVRVTDPAHRAALTRLFETGMSDTTSSWHLGPDGAWTRHATDSDGQPLRHVQETLIDARRRRRAQP
>NZ_CP022438.1|WP_100107913.1|3686789_3687737_+|hypothetical-protein
MSTLTTSRPRLRLRGVTWLVAHQHRRILTTAAALLVAAAVGTSGLRVAYEATPYDDTATGLFTNSAYRGGIAAVADFFAHAALLLPLLVAAVVAGPMVARELESGTYKLVWSQSVHPARWFAAKVALPAVAVGVVTIGLIGLFRVLWGPAAGDYRLSWHERQVFLVLGPTLLAYGLLAVTVGALTGLLVRRTMVAMSAAGLATGTVMAAMFALSEHLWAPASATSGDPDSVQSVPGEFVVDTGLLTASGERLPEGVCFVPQYAACYTEHGVVGRWWDYHPDSHLWPLQLVETGIVLALAAAVAYAALRIFRSRHA
>NZ_CP022438.1|WP_100107912.1|3685875_3686793_+|ABC-transporter-ATP-binding-protein
MTATAIEANGLGLGYGRRGRRALDDCSFRVPAGRVCALAGPNGAGKSTLLALAAGLLRPTDGTLRVLGGTPSDVRAGTSRAEGLRERIAYVAQDKPLYPQLTIGETLRLGHELNPGRWDAAVAERIVEEDGGLDPGARVRSLSGGQRTRVALALALAKRPELMLLDEPMADLDPLARHRLTAALMTEAADHGTTIVISSHILSELEATCDYVLLLDGGHVRLAGETEDLVCAHTLLTGPVAELPDHTVVESRTTGRQLTALVRGSGAVGGGWRTSQPSLEELLMAHLRSPDAPPLLTPSAEVATA
>NZ_CP022438.1|WP_100107911.1|3685483_3685879_+|GntR-family-transcriptional-regulator
MVEFRIDRRSGVATYLQIVQQTKQALRLGLLEPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRGLGTFVTRTLGGPAADTPLRAELADWLDRARKAGLEQDDITALFTSVLEERADNHKGDGA
>NZ_CP022438.1|WP_100107919.1|3697114_3698113_-|inorganic-phosphate-transporter
MDTFALVVTIGVALFFTYTNGFHDSANAIATSVSTRALTPRVALAMAAVMNLAGAFLGQGVAKTVSEGLIETPVGSRGMGILFAALVGAIVWNLITWYFGLPSSSSHALFGGMVGAALAGGTEVIWTGVLEKVVIPMFVSPVVGLVVGYLVMVSIMWIFRNSNPHKAKRGFRIAQTVSAAGMALGHGLQDAQKTMGIVVMALVIADVGDAGDPIPVWVKIACAVMLSLGTYAGGWRIMRTLGRKIIELDPPQGFAAETTGASIMFGSAFLFHAPISTTHVITSAIMGVGATKRVNAVRWGVAKNIILGWFITMPAAALVAALSYGVVYLIFG
>NZ_CP022438.1|WP_100107920.1|3698118_3698739_-|DUF47-domain-containing-protein
MRFRLTPRETSFYDMFAASADNIVTGSKLLMELLGADSSARAEIAERMRAAEHAGDDATHAIFHQLNSSFITPFDREDIYSLASSLDDIMDFMEEAVDLVVLYNVEELPKGVEQQIEVLARAAELTAEAMPHLRTMDHLTEYWIEVNRLENQADQIHRKLLAHLFNGKYDAIEVLKLKQIVDVLEEAADAFEHVANTVETIAVKES
>NZ_CP022438.1|WP_100107921.1|3698932_3699277_+|metal-sensitive-transcriptional-regulator
MTTTEAAGLPVTDHETDHDRGVHGYHKQKDEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADAAVKGGDEIDAKVEEATKAIARLLRT
>NZ_CP022438.1|WP_100107922.1|3699298_3699637_-|hypothetical-protein
MHVAPTRTATVHDDHVALAEIELCGELMIAASAAAGERLSADRIDEVLMVAADRARRVDRGDCADLQGLTSPRQPGPGGRQASGRPESLTDKIKPPSPPPVVRGRRRADHSP
>NZ_CP022438.1|WP_100107923.1|3699820_3700657_-|hypothetical-protein
MVVQHKRRGGAVAVVAAMAVATVGGCSGGGAAAVDGDGGAVRAGGSADEVRKAADTLAGARSSKARTSMEMASGGTRVTIRGEGGYDFARGMGSLKVVLPPDAAGEEEHEPITELLTPGALYMKNRGAGVPADKWVRVDTTTLDDGNLVTGGATDPLAAAELLRGADRVKYVGDVQLSGEKVRHFKGTTHIGRAARVALPHSRASLAAAAEGFAKDVVPFDAYLDEEGRLRKVRHHFTFANEGRTVDVTSTTVLFDFGASVVVQLPEEKDIYSGKVGV
>NZ_CP022438.1|WP_100111211.1|3701068_3702628_+|FAD-binding-oxidoreductase
MDRRALLTTAVALTAGTAVGCTNQEAGAPPRTPAPTRTLPTPSATTTAAPDWAALARGLDGQLIRPGDAEYPSARQLYNTRFDSLKPAAVAYVAGEDDVKECLAYAKAHGTPVSIRNGGHSYGGWSSGNGRLVIDVSSLNRIEADGSIGAGAKLVDVYNTLARHGRTVPAGSCPTVGVSGLALGGGHGVTSRAYGLTCDSLTGATIVTADGRRLTVDADENKDLFWALRGAGNGNFGVVTRLRFRTHSTPDTVSAFLNWPWQRAEPVLAAWQRWGPDQPDEIWSSLHLAAGPGGSRPTLSVAAFTLGSESDLQNALDRLVDAVGSPATSVALRPRSYRDAMLGYANCLSLTEEQCRLPGTTPGRDRQGALPRETYASASDFYDRDIAAGGRRALIAAAEAFTRLPAAAGGGGSIALTALGGAVNRVDPLATSFVHRRSRMLAQYIAAWRPGTGGTTQQAWLKDTHASMRRYASGAAYQNYADPNLADWRRAYYGPALDRLTRLKRRYDPDRLFDYPQAL
>NZ_CP022438.1|WP_100107924.1|3702785_3703211_+|SseB-family-protein
MNTDTPLEERIAELRAGIGDPRAMVGELRRAVVLVPLEGGGLWTAESGGVRWILGFSDEEALARFARARDAGDGRDTGRSWEFAALLGARLLDEIVPAIGVPAGLAMNVADPDGAMLFPPVMGIVPDAVAVDVDETPGGQG
>NZ_CP022438.1|WP_100107925.1|3703207_3703855_+|hypothetical-protein
MMGSGAEGLGVDRHSVQRITHGLRAAVSELREVGTGTGSVLGKGFSELAMTGMEAGHHGLAVDFEDYAERWEWGVRALVQDANTIAAKLGLAAGLIWEEDQYVQGTFKIVVNAGVGNPHASEDEIVSQNWGDVFTPDYLDPDYSPESFQQAGEEAAQTWKDTGRALLTEGNGGRRASALNDLIGIDQEDFDRAVDDTFGPSPEERARQEQGDAGN
>NZ_CP022438.1|WP_100107926.1|3703882_3708559_+|type-IV-secretion-protein-Rhs
MGIGDFVSDITPDVVEDAVEDATEWAGDRVEDAGNWTADRLEDVGWESGADWVREQSRSLANRMGAEVDEMNLGQTEDKSKLVYGSPSKLRSTASHLKDFKQAFNNVGLGLEGLDSDSLKGQAADAFRRTVAIEPPKWFKAADAAEKAAGALESFAGTVEWAQGRAQTAIEKWKAGTKASEDAMDAHNKKVDEYNKAADRYNAQPADQRDPASLPPKPGAFTDPGKAQMEEAQEILAEARKQRNTAAETARKAVQAARDAAPPKPSYAEQAVDGLSELEVMKTHFGGGIIKGTAGLLTFVRSVNPLDLYNITHPAEYALSLNNMAAGLVQVANDPWGAGKQMLDDFMKDPAEGFGRLVPDALLAVATGGAGAGVKGVRLADDLSDAARRADNAADASRKVTDKCCGREPVDFATGRMLLAESDVFLPGTLPLEFRRDYESSYRAGRWFGPSWSSTIDQRLTVDSLGVVFHGEDNLLLAFPHPAPGLPVLAEAGPRWPLERNVDGGYVLTDPDNGHVRRFLAPPGAEPGGDGIAPLAEIEDRNGHTITAEYDETGAPLSLSHSGGYRLVFTTEDGRITSLRLDDATPGTPEPSSTQLVRYGYRDGDLTEVTRSSGLPLRFEYDSESRITAWTDTNDSSFTFVYDEYDRCVSQTGTEGHLRTEFHYSEPDTTTGLRTTTVTDSLGHVWRYTVNARLQVIAETDPTGATVRTTYDRYNRLLTRTDPLGATTVFDYDDDGHLTGVTHADGSRMHAAYNGLGLPVELTREGGARWQQEFDERGNRLSVTDPAGRTTRYTHDVRGHVTSITDAQGGVTRLRHDPAGLLLEQEEPTGGVTRYIRDAFGRITALVRPDGAVSRFEWTPEGRLERCTGPDGATETWTYDGEGNCVRHTDPMGGVTHFAYTHFDLLASRTDPDGTRHEFDHDTELRLTRVTGPHGLDWCYTYDSAGRLIAETDFDDRTVGYEVDPLGRVSARITPLGETIRYERDVRGRVTSKDAAGHVTSYSYDAAGRLLQAVGPESEVVYQYDREGRVKAELVDGRAVTYAYDTAGRRVRRTTPSGQVTSYAYDASGRAAQLVAGGHQVDFERDRSGREVVRRVGEALTLTSRRDGAGRVTAQEISAGGRSLNRRSYTYREDGHLTEIDDALNGRRRFRLDAVGRVNAVTAARWTESYAYDRLGNQTAASWPDRHADSEAGGDRTYAGTRVVRAGANRYEHDAAGRMIRRTRSRLSKKPATWRYAYDVEDRLVEAVTPDDTVWRYRYDPLGRRTSKERMAPDGGVAERIDFTWDGTLLAEQTTRPADAPVATLTWDHHGLTPVAQTERLADTATGQEIDTRFFAIVTDLIGTPTELVDDEGSIAWRSRTTLWGTTTWNRDATTYTPLRFPGQYYDPETGLHYNHYRYYDPQTARYTTPDPLGLAPAPNPVAYVHNPHTWSDPLGLAPYENNGGLGELVKVHKPDPAADALAERLGGESRVKFENDPKGREIDAISDEYVAQSKPEGMQMGSALRNQAKATFEYALQSGRTPYFHFDGEPGPGVIDKLKEYGRRYGIEPVIDTTPLE
>NZ_CP022438.1|WP_100107927.1|3708564_3708960_+|hypothetical-protein
MYEFHGWFGIAESPEEADAGTLDPGIAELRQRIAGIDWATGEVALKVHNGEYFVLANGLMNRRRDEAADLDGLLHHIATRFPGSWGLLYERSSDMDEPPGQGAFRVRVMARGEIQVRLDPFLSPVRPVIED

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Crispr_ID: NZ_CP022438_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_9

4777150-4777263

Orphan

Consensus_repeat	Method
CCGCCGCTGCCGTTGCTGTAGGTGCTCTTGCGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022438_9

>merge|NZ_CP022438|9|4777150-4777263|CRISPRCasFinder
CCGCCGCTGCCGTTGCTGTAGGTGCTCTTGCGCCAGGTGGCCGCGCCGGGGAACGCCTCCGCGACCTCGACGCAGTCCCCGCCGGTGCCGTTGCTGTAGGTGCTCTTGCGCCAG

>NZ_CP022438|9|8|4777150-4777263|CRISPRCasFinder
CCGCCGCTGCCGTTGCTGTAGGTGCTCTTGCGCCAG	GTGGCCGCGCCGGGGAACGCCTCCGCGACCTCGACGCAGTCC
CCGCCGGTGCCGTTGCTGTAGGTGCTCTTGCGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100108721.1\|4774724_4775315_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP022438.1\|WP_100108717.1\|4771503_4772082_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100108731.1\|4784618_4785350_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP022438.1\|WP_100111309.1\|4783441_4784338_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP022438.1\|WP_100108726.1\|4778308_4778512_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226909
NZ_CP022438.1\|WP_100108719.1\|4772838_4773648_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP022438.1\|WP_100108725.1\|4777278_4778133_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP022438.1\|WP_100108722.1\|4775666_4776038_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP022438.1\|WP_100108720.1\|4774179_4774614_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP022438.1\|WP_100108723.1\|4776473_4776989_+\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|214864
NZ_CP022438.1\|WP_100108727.1\|4779663_4780614_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379650
NZ_CP022438.1\|WP_100111307.1\|4769561_4770431_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP022438.1\|WP_159026829.1\|4782726_4783233_-\|DUF1877-family-protein	unknown	unknown	gnl\|CDD\|378105
NZ_CP022438.1\|WP_100108732.1\|4785349_4786405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP022438.1\|WP_159026828.1\|4780719_4781601_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234700
NZ_CP022438.1\|WP_100108718.1\|4772145_4772739_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP022438.1\|WP_100108715.1\|4766812_4767340_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379649
NZ_CP022438.1\|WP_100108729.1\|4781602_4782490_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100111308.1\|4778880_4779615_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100108716.1\|4771014_4771332_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379736

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100108721.1\|4774724_4775315_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.91913e-31
NZ_CP022438.1\|WP_159026828.1\|4780719_4781601_+\|hypothetical-protein	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	0.00671925
NZ_CP022438.1\|WP_100108731.1\|4784618_4785350_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	2.32152e-29
NZ_CP022438.1\|WP_100108726.1\|4778308_4778512_+\|hypothetical-protein	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0.000970637
NZ_CP022438.1\|WP_100108719.1\|4772838_4773648_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.5754e-08
NZ_CP022438.1\|WP_100108725.1\|4777278_4778133_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.00257e-07
NZ_CP022438.1\|WP_100108722.1\|4775666_4776038_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.31608e-15
NZ_CP022438.1\|WP_100108720.1\|4774179_4774614_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	6.44623e-35
NZ_CP022438.1\|WP_100108723.1\|4776473_4776989_+\|SMI1/KNR4-family-protein	gnl\|CDD\|214864	smart00860, SMI1_KNR4, SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.	2.79791e-06
NZ_CP022438.1\|WP_100108727.1\|4779663_4780614_+\|hypothetical-protein	gnl\|CDD\|379650	pfam14568, SUKH_6, SMI1-KNR4 cell-wall. Members of this family are related to the SMI1/KNR4-like or SUKH superfamily of proteins.	0.00175775
NZ_CP022438.1\|WP_100111307.1\|4769561_4770431_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.60832e-30
NZ_CP022438.1\|WP_159026829.1\|4782726_4783233_-\|DUF1877-family-protein	gnl\|CDD\|378105	pfam08974, DUF1877, Domain of unknown function (DUF1877). This domain is found in a set of hypothetical bacterial proteins.	0.000756855
NZ_CP022438.1\|WP_100108718.1\|4772145_4772739_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.827e-17
NZ_CP022438.1\|WP_100108715.1\|4766812_4767340_+\|hypothetical-protein	gnl\|CDD\|379649	pfam14567, SUKH_5, SMI1-KNR4 cell-wall. Members of this family are related to the SMI1/KNR4-like or SUKH superfamily of proteins.	0.00385028
NZ_CP022438.1\|WP_100108732.1\|4785349_4786405_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.53145e-06
NZ_CP022438.1\|WP_100111309.1\|4783441_4784338_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	1.34975e-23
NZ_CP022438.1\|WP_100108716.1\|4771014_4771332_-\|hypothetical-protein	gnl\|CDD\|379736	pfam15595, Imm51, Immunity protein 51. A predicted immunity protein with an alpha+beta fold and a conserved tryptophan and Dx[DE] motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-RES or Tox-URI1 families. Proteins containing this domain are present in heterogeneous poly immunity loci in polymorphic toxin systems.	1.55496e-12

>NZ_CP022438.1|WP_100108723.1|4776473_4776989_+|SMI1/KNR4-family-protein
MASLDDIRALLGEPRFGWSDPAPWHRLEEELGIVFPDDFREFCDAYGPVRINNQVHTTHPGVAHGNLGRLIRSDIEAWAHAPEDMVTQPVGTGPGELFPWGSAASGETMFFRVPKDASEAWSVFVHESDEGEFLEYAMSFGDWMLAYVRGEDVGVCSRNFAPEGPFFQPFG
>NZ_CP022438.1|WP_100108722.1|4775666_4776038_+|MarR-family-transcriptional-regulator
MNSHHFAATAGESLVAGDLADRARLTTGAVTGVLNRLEKAGYIRRQADPRDRRRVQVVMEESALERILEVYGPFYERLGMLFADYGPDEIAVLADWFTRAKALFQDSLDEIRQGVSEWPPSDR
>NZ_CP022438.1|WP_100108721.1|4774724_4775315_+|flavodoxin-family-protein
MTTPVVSIAYHSGYGHTAVIAEAVRDGAAAAGATVHLIKVDEIDEAQWELLDGSDAIVFGSPTYMGTASGAFHKFAEDSSKRWFTDAWKNKLAAGFSNSGSKSGDKLHTLQYFATLAAQHGMHWVNLGLKPGWNSTEGSEHDLNRLGFFFGAAAQTNSDEGPEGVHKADIATAQHLGWRVAETARTFIAGQAAVAA
>NZ_CP022438.1|WP_100108720.1|4774179_4774614_-|helix-turn-helix-transcriptional-regulator
MQTSETSTQQESSGACPDDDLAFDVFSRNCPSRGTLEHVTGRWGSLTVGALHDTTFRFNELRRRVDGVSEKMLSQTLHALERDGLVQREAQPTNPPRVDYELTPLGHEVAERLLDLIHFLEGRMPEVLAARERYDEMREGLGSR
>NZ_CP022438.1|WP_100108719.1|4772838_4773648_+|alpha/beta-hydrolase
MSMSPQSIVLIHGLWLSPHSWQPWIDRYRAQGHTVHAPAWPGISELHEPLDHDRAPAGLGVREIADHYESFVRTLDAPPVIIGHSFGGLVTQILLDRGLGAAGVALHPAPAKGVLRLPLSTLRATRSVLANPANRNGTVKLTDRQFHYAFANTVSLEQAAAERARWAVPGVGRTLFQAGFANFTPAARAATAVGFDNPDRAPLLLVAGTADHIVPAAVVRETHHRYRRSAALTEYRECPGRDHGTGLHDGWEAVADDALDWALRTRQPA
>NZ_CP022438.1|WP_100108718.1|4772145_4772739_-|TetR/AcrR-family-transcriptional-regulator
MDTVPDPAAVRPKPRERLLETASDLFYAEGIHAVGVDRLIAEAGVPKATFYRHFPSKDDLVLAYLRGRDATIRARLAAASANTGTPQQVLDLLIAGISEESCGPGFRGCPFINAAAEYPNPEHAVRRLIAEHRAWFCDALTSLAAACGHPDPPTAAATLVLLRDGAMVGGYLDRAATPDALARAVHAVLGGPGPSPA
>NZ_CP022438.1|WP_100108717.1|4771503_4772082_+|hypothetical-protein
MTDLETLRQLMPPKAAPDTSVDWARMGESWGTEFPPDYRAFMEVWGPGAIDDFFQVQVPEPKAEELTSPYGGMLVETLTAEDAWANFGQEPELEGTQPRLIAWGSDAAADIICWDASGDDPSAWPVLVYHRGKGVWRRHDCGMVEFLVRVLRAEFPANPLSDLSLWGRHPALFLSESEEERLLEQGLDPWAE
>NZ_CP022438.1|WP_100108716.1|4771014_4771332_-|hypothetical-protein
MTITLHDFDGEHSLTLAVGDLAADAAVVAAGHEPNGYFWEGLVQFAWPDLAERLDFDSEGGMFCALGSLSDLARLKTSLEPVISSPSTVREIVARAETAGFEFDA
>NZ_CP022438.1|WP_100111307.1|4769561_4770431_+|IS5-family-transposase
MPTRRPYPSDLSDARWELIEPVLSAWRFERRGRALDFGRPPEHDLRDIMDAILYVDRTGIQWRYLPHDFPHWNTVYGYFTKWQQEDVFAQLNGLLRQLLRQKEGRDAEPSACVIDAQSVKTSTRVHASSQGIDAGKKIVGRKRSIVTDTIGLLMAVLVTAASVQDSAAGTRLLDQVAADHPGIRKVWVDGGYRQHLVEHAATLGIDMEITARTPGTRGFNPIPKRWAVERTYGWLMLHRRLARDYETLPERSEAMIHLAMTDLMARRLTGENTISWRDPTPQTKQSIPG
>NZ_CP022438.1|WP_100108715.1|4766812_4767340_+|hypothetical-protein
MWVERIAEATNWEPLALELPWGSVEEDLGTSLPEDYKRLVETFGKGEFSEFMNVFCVDATGQFDLTRIWHKYLGHSPEEGPHPVVKPYQMYRPGGRGLIPWAFGERECSYFWLASAEEDPATWPIVTKGDPYPWHEVRMSTSEFVYRVLADPEFEPFSIARLFPQPDFYPMGPVV
>NZ_CP022438.1|WP_100108725.1|4777278_4778133_-|helix-turn-helix-transcriptional-regulator
MGQRKDIDGSASVPTFYGSELRWKREEAGLTLQQLVEGSFYGPSHLSEIERGTRRMPAELAEHVDEVLGTDGFFKRRCEDVRKAKRRGHASYFERVLEAEKHAKAIEEWCPTLIPGLLQTDAYARALVQAAMPLALDDEVEEKVSARMARARLFEDSHRTPMYWAILSEVLLRQPVLPPEQTAEQLEHIAALARRRRIVPQILPWNCGPHPLMMGMAKVMTFPDAPPLVYLESQHSGDTIDDPVLVEKYRRSYDLLRAAAMPPEASLAMIEEAAEDVRNGNHQD
>NZ_CP022438.1|WP_100108726.1|4778308_4778512_+|hypothetical-protein
MHDHPDAQTCAEELRAALAAHGITLPSLGVDLPTFAARYPDRPLIALGNCNLLTARALVAALRKGAA
>NZ_CP022438.1|WP_100111308.1|4778880_4779615_-|hypothetical-protein
MMSSVTKSADLIPTWIPGYDGGPLTHRPELLDERLFWLGHLYTCAHDEEGEELLFGADLDAAADFHRELHERADWPVFTVPLAAGHHLHVVYRTFEDDPGTDCLAHHPDWDRAERLAVADGHFMGPALSWPELVAAADNGLPGGSTTDPDARLLLLLPALGDDDVPDDAAERLTSALRALIGVEDPEALAAALLDGQGAPGPATWTTTGDGVRINDGPYSYRNPANRFALPPARLARVSAALAF
>NZ_CP022438.1|WP_100108727.1|4779663_4780614_+|hypothetical-protein
MDEREELRLEELLSAVHRLAAPGTGDLACAAPGHPAGHVCLAPSAELGLPALQEALDGQYGQPRNLAMGGYADPTVTGRTGLPLLTPFGERIVEMRAWAYADRWIGCGTARAGDGDGDGVRLVALVAEREDPAADMAEGTSWVDGVVAVTGWDTTRVRTVDWAAVETRLGTALPSDYKRLAEIFGAGAFDGFLQLQIPDAAFESGDIVRHTEWLGEWARTRGGELWRPYEVYPAPGGLLKWASSEQADEFYWLTEDPDPDKWPVLVTEDIPDSWVRFDGTTAEFVLRMLTEREHPFSTARYFDTHWFQSYGSEDRP
>NZ_CP022438.1|WP_159026828.1|4780719_4781601_+|hypothetical-protein
MRTRPRRTAVLVLPLALALALAACGTEAEEPAGAEGPEAAPSSSPAPEPSEAPESAEDFLDLAEKAMAEESAWTFSVEGDEGLTLQGQKSAATYRGTVRRGMGTATLHSQGVSTSSKGKKKTEELYVIGEAGYLKEGGAAWKAVSPADPEMRNKVEDPVSVVDEFRIYAQASGGGVKVTEAGDGTVELRVASGRQKLSAVQGRAWAKKAKREFDPTAEQLREAGIPVQDAQLTLSGLEEVLVLDAKTYRIKSHRLDFGFLIPYNGQDITFEQQVGEENQGPYDGKIELPAGVR
>NZ_CP022438.1|WP_100108729.1|4781602_4782490_+|hypothetical-protein
MEIVPLTGVSGAAFGQSRASVRAVRGEPDSAFRRGADAPLTDMYADESYVSFEYDDADLLHAIEIASPGPVTLHGVRLLGRPEDEVVGELRAAGHEVVAEEEAGSIGWALPALGVTLGGTAQDTDGFESVRFRGVPATLDAFEFFEGPDGRSGPGEAVVLPHRGIGAVRIGAARSAMRRLLGPGIGSVPEFGAAWQDTFFSGVVLAYDADETVVRIAVTGRTSVGHDGVPLLGRPRRDVRAQATEAGLRVLDREAELVFPDAGFSVLTARDGDALPTTAVVLPAPVPPPAVTRLW
>NZ_CP022438.1|WP_159026829.1|4782726_4783233_-|DUF1877-family-protein
MSFHTHLRAVQESAIEGFDHARLVDFMGAAWDWDVRQAEHSSGVAYSIEKVFASVNDLCQAGAALPEGLDGAWGLPVFGGRVLHDPKSPEAPFAVLDPAGTARAAVFLTAVPFDTLWDVAGAKLRDGFGPGWDADEIRGMHAGYHTGLRIFYERAAASGQAVAKAFWY
>NZ_CP022438.1|WP_100111309.1|4783441_4784338_+|L,D-transpeptidase-family-protein
MSLVSACGGGEEPADAAASVSPGAVSGAGDQAGSSATPSPSASASASASASPSVSASVSAKAPGGASPKPTATGASGSGGSGSGSGSGSGGSEQSAAPAAAPDFPVPVEVGNATQVITVKAGGSYATVTAWQKGSSGWKAQFSTSAGRVGSNGVVPGSTRKQSTYTTPSGTYTITEGFGVESSGTAMPYTKVNDSHWWVQDPESKFYNQMHTAEGADFPLTESGERGSEHLINYPTQYAKALVINFNRWPAVPGRGAGIFLHVNGSGATAGCVSVPRATMDKFMGWVQPSAHPRIAIG
>NZ_CP022438.1|WP_100108731.1|4784618_4785350_+|RNA-polymerase-sigma-factor
MLGDDAELTAAVLAAQDGDEDAFRAVYRAVHPRLIGYVRTLVGDADVEDVTSEAWLQIARDLDRFSGDADRFRGWAARIARNRALDHIRMRGRRPAVGGDETELTGRPAESDTVDEAMESISTSSTMALIAQLPQDQAEAVVLRVVVGLDAKSAAKTLGKRPGAVRTAAHRGLKRLAELLGADGVTALESADGSPRDATRRGGEGPAQTAPELGGLPSQRDSRPGAAAPAGVTHSRLRTQKDM
>NZ_CP022438.1|WP_100108732.1|4785349_4786405_+|hypothetical-protein
MADERYEWLDRDAAERLLRGETVEAADERARTEAARLLAALESATDPDYRYDDGELPGEAAAMAAFRKARADVAASAGTSLGTVRVARADRTGRGTGLVRPLRFGIAAALAGCAIGGVAVAAGSGVLPSFGDNGPAPASSVSAAATPEPLGSPTQSGGGTGSQPRSPGAAGTPPALPPVGSATPSPADTGKATPGGPVDDGRATPGADGSARKGDLYRKTVEACRDYRSGRIAEDRKRTLEAAAKGATRVERFCDELLGSGSGDGAVGGAGDADSSGGSGGDNGEGDNDGGDGDKDSGGSGDGDRDADGDDLPQPPATPQVSWSLFPAPSAAVTPSGTSGTPSLSAVVQPS

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Crispr_ID: NZ_CP022438_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_10

5600559-5600706

Orphan

Consensus_repeat	Method
CTGTGCCTCGATCGCCGGCGGGGCCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP022438_10

>merge|NZ_CP022438|10|5600559-5600706|CRISPRCasFinder
CTGTGCCTCGATCGCCGGCGGGGCCGGCACGTACTCGTCTTGTCGGGCCTCCGTCCTGGGTGCTGTGCCTCGATCGCCGGCGGGGCCGGTGCTTGCCCGCAAGGTCGTCCCGCCGCGGGATGTGTGCCCCGACACCGGGCCGGCCCGG

>NZ_CP022438|10|9|5600559-5600706|CRISPRCasFinder
CTGTGCCTCGATCGCCGGCGGGGCCGG	CACGTACTCGTCTTGTCGGGCCTCCGTCCTGGGTG
CTGTGCCTCGATCGCCGGCGGGGCCGG	TGCTTGCCCGCAAGGTCGTCCCGCCGCGGGAT
GTGTGCCCCGACACCGGGCCGGCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100109327.1\|5583514_5585197_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP022438.1\|WP_100109334.1\|5594560_5598400_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372376
NZ_CP022438.1\|WP_005311457.1\|5609724_5610138_-\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|367422
NZ_CP022438.1\|WP_100109343.1\|5610147_5613783_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|377989
NZ_CP022438.1\|WP_100109331.1\|5592039_5592660_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP022438.1\|WP_100109340.1\|5603798_5604404_-\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_CP022438.1\|WP_100109329.1\|5587286_5588906_+\|citramalate-synthase	unknown	unknown	gnl\|CDD\|237068
NZ_CP022438.1\|WP_100109328.1\|5585208_5586279_+\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NZ_CP022438.1\|WP_100109337.1\|5600827_5602033_-\|erythromycin-esterase-family-protein	unknown	unknown	gnl\|CDD\|350610
NZ_CP022438.1\|WP_100109335.1\|5598652_5600236_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|130187
NZ_CP022438.1\|WP_100109339.1\|5603236_5603818_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_CP022438.1\|WP_100109338.1\|5602091_5602841_+\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133400
NZ_CP022438.1\|WP_100109333.1\|5593104_5594331_-\|sugar-hydrolase	unknown	unknown	gnl\|CDD\|185759
NZ_CP022438.1\|WP_100109342.1\|5608621_5609203_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_CP022438.1\|WP_005311461.1\|5604541_5604955_-\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|214939
NZ_CP022438.1\|WP_100109341.1\|5604965_5608271_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NZ_CP022438.1\|WP_100111386.1\|5586338_5586893_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379409
NZ_CP022438.1\|WP_100109336.1\|5600263_5600476_+\|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|379386
NZ_CP022438.1\|WP_005311458.1\|5609183_5609588_-\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NZ_CP022438.1\|WP_100109330.1\|5590605_5591793_+\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173790

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100109327.1\|5583514_5585197_+\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP022438.1\|WP_100109334.1\|5594560_5598400_+\|hypothetical-protein	gnl\|CDD\|372376	pfam12905, Glyco_hydro_101, Endo-alpha-N-acetylgalactosaminidase. Virulence of pathogenic organisms such as the Gram-positive Streptococcus pneumoniae is largely determined by the ability to degrade host glycoproteins and to metabolize the resultant carbohydrates. This family is the enzymatic region, EC:3.2.1.97, of the cell surface proteins that specifically cleave Gal-beta-1,3-GalNAc-alpha-Ser/Thr (T-antigen, galacto-N-biose), the core 1 type O-linked glycan common to mucin glycoproteins. This reaction is exemplified by the S. pneumoniae protein Endo-alpha-N-acetylgalactosaminidase, where Asp764 is the catalytic nucleophile-base and Glu796 the catalytic proton donor.	1.13067e-153
NZ_CP022438.1\|WP_005311457.1\|5609724_5610138_-\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	9.82692e-24
NZ_CP022438.1\|WP_100109343.1\|5610147_5613783_-\|sensor-histidine-kinase	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	6.59723e-37
NZ_CP022438.1\|WP_100109331.1\|5592039_5592660_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	6.10663e-62
NZ_CP022438.1\|WP_100109340.1\|5603798_5604404_-\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	1.5587e-43
NZ_CP022438.1\|WP_100109329.1\|5587286_5588906_+\|citramalate-synthase	gnl\|CDD\|237068	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional.	0
NZ_CP022438.1\|WP_100109328.1\|5585208_5586279_+\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	1.88597e-157
NZ_CP022438.1\|WP_100109337.1\|5600827_5602033_-\|erythromycin-esterase-family-protein	gnl\|CDD\|350610	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins. This group contains erythromycin esterase, which shares conserved active site residues of the Tiki/TraB family. Erythromycin esterases (EreA and EreB) disrupt erythromycin via the hydrolysis of the macrolactone ring. A critical catalytic histidine acts as a general base in the activation of a water molecule. Macrolides act by inhibiting bacterial protein synthesis by binding at the exit tunnel of ribosomal subunit 50s, blocking the translation of the polypeptide. Erythromycin esterase, typically found in integrons and transposons, confers antibiotic resistance through the disruption of the drug ring structure. EreB substrate profile is substantially broader than that for EreA, being able to also metabolize semisynthetic derivatives such as azalide azithromycin.	1.60431e-70
NZ_CP022438.1\|WP_100109335.1\|5598652_5600236_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP022438.1\|WP_100109339.1\|5603236_5603818_-\|ATP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	1.56372e-46
NZ_CP022438.1\|WP_100109338.1\|5602091_5602841_+\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133400	cd04773, HTH_TioE_rpt2, Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.	6.89841e-41
NZ_CP022438.1\|WP_100109333.1\|5593104_5594331_-\|sugar-hydrolase	gnl\|CDD\|185759	cd09220, GH64-GluB-like, glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains are found associated with other domains such as in the Catenulispora acidiphila DSM 44928 carbohydrate binding family 6 protein in which they are positioned N-terminal of a carbohydrate binding module, family 6 (CBM_6) domain.	9.98085e-180
NZ_CP022438.1\|WP_100109342.1\|5608621_5609203_-\|ATP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	7.32306e-46
NZ_CP022438.1\|WP_005311461.1\|5604541_5604955_-\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	1.75382e-22
NZ_CP022438.1\|WP_100109341.1\|5604965_5608271_-\|HAMP-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	3.64816e-29
NZ_CP022438.1\|WP_100111386.1\|5586338_5586893_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	4.00967e-19
NZ_CP022438.1\|WP_100109336.1\|5600263_5600476_+\|acyl-CoA-carboxylase-subunit-epsilon	gnl\|CDD\|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	1.99518e-09
NZ_CP022438.1\|WP_005311458.1\|5609183_5609588_-\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	6.3171e-42
NZ_CP022438.1\|WP_100109330.1\|5590605_5591793_+\|S8-family-peptidase	gnl\|CDD\|173790	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.	5.35438e-115

>NZ_CP022438.1|WP_100109336.1|5600263_5600476_+|acyl-CoA-carboxylase-subunit-epsilon
MSTPTDPSSLLRVEKGHAEPEELAAITAVLLARASAAQPDAAPAHRGRTTAGWRRLERQRGFQPSHSWQG
>NZ_CP022438.1|WP_100109335.1|5598652_5600236_+|acyl-CoA-carboxylase-subunit-beta
MTVLDETTSEPSDARGRVAELHEIREQALRGPSEKATEAQHAKGKLTARERIALLLDEGSFREVEQLRRHRATGFGLEAKKPYTDGVVTGWGTVEGRTVFVYAHDFRIFGGALGEAHATKIHKIMDMAIAAGAPLVSLNDGAGARIQEGVSALAGYGGIFQRNTRASGVIPQISVMLGPCAGGAAYSPALTDFVFMVRETSQMFITGPDVVKAVTGEEISQNGLGGADVHAETSGVAHFAYDDEETCIAEVRYLLSMLPSNNRENPPTGSCDDPAERRSDVLLDLVPADGNRPYDMAKVIEELVDDGEYLEVHERWARNIICALARLDGQVVGIVANQPQSLAGVLDIEASEKAARFVQMCDAFNIPILTLLDVPGFLPGVDQEHGGIIRHGAKLLYAYCNATVPRISLILRKAYGGAYIVMDSQSIGADLTYAWPTNEIAVMGAEGAANVIFRRQIADAEDPEAMRTRMVKEYKAELMHPYYAAERGLVDDVIDPAETRSVLIASLAMLRTKHADLPSRKHGNPPQ
>NZ_CP022438.1|WP_100109334.1|5594560_5598400_+|hypothetical-protein
MPRRFRAACSLLAASCAVFALAGPAYPAPPDDGPGAVATSGAGPVMSSGRLSVAVADDFPRVLSYTDRASGASLLGSTAPVTEVTLNGKPYEVRTDAAPRFEGSAARYTLVFPELPGVAMDAVLSVSGRAVTFKITAVRDTEAFRVGTIDIPGHDLVSVGSTEQGAATAFTRLDPDSTRTADVFADVTAATPADAAPVGASYAIVNTGSLAAAVESNSSYDRPSGPTGGDDARFWHQARKKADGSTRVGVRSGQWTYRGDGAPQPESGGNLPWAKVVVTPDANGDRTVDWQDGAIAFRTIGVTAPGSKDTPDRVITHIPFNFASQATHPFLRTLDDVKRISLATDGLGQLAVLKGYGAEGHDSAHPDYGGNYNKRAGGLTDLNKLLEDGEKWGATFGVHVNATESYPEANAFDEKLVDKTKPGWNWLNQSYYIDQRRDINSGDLARRFRQLRDETHRSLNFLYIDVYYTHGWIADKTIQAVRNQGWHVGTEWADKFERASLWSHWANDLDYGGKTNKGLNSQIIRFIRNGEKDIWNNHPVLGQTALEDFEGWTGETDWNAFYDNIWQRDLPAKYLQHERISRWNGNDIRFTGGLRGTVEDGRRTFYDHDRKVLDGDRYLLPWDGGKKLYHYNQAGGTSSWAVDGNATYTVYKLTDNGRVKTGTVRPKDGRITLSAPAGQPYVLYPQHAPEQRDARWGEGGPVADPGFNDAGLDDWTTAGSVGRDTDDQGRNSAALGGPGAASLTQQLGGLQAGERYTASAWIEVEPGKSRRTTLSIGGESVTLERSTARNQVAASDWHSTYLQRAKVSFTAPDGTATLRIDAAADSDARVRIDDVRVVAGAPATEPGALVHEDFEAVDQGWGPFLKGDAGGATDPRTHVSRLHAPYTRAGWNGKLIDDVIGGKESLKAHDENTGLVYRTAPWTVPMKDGHSYRVQYDYQSSHAGAYAWVTGYDRATGGSVETRRTPVGQQRTTGHFAETVTAGCGDTWTGLRKRADAPDGADFVMDGFTVTDLGPTAEQTACGTLAVTAPETLEPGDGNEIRAAFTNDETTAAGDVRLGLQLPEGWTAEPAGPVTFETVAPGAEVTGTWQVTPPADAEYRTYSLGATAAYTVDGSARRLTAAAPVRTLPPPRVADAWASDLDWTSAENGWGPVERDLSNGETGTGDGSPLRIGGVVYEKGLGSHAPARIRYYLGGRCTSFTAQVGVDDVQTSRGSVRFGVSADGTEKAASPVLRAADPAWSLTADVTGADYVELVVSDGGDGNGNDHADWGAARFHCGG
>NZ_CP022438.1|WP_100109333.1|5593104_5594331_-|sugar-hydrolase
MISRRTFLTGAAATATALTYPAWGSALSPGAGAAPATCELALENKSLPGTVHAYVTGHEDGSGDWVLLRADGSVHKPADPSAPQTPLGVDCAIPLKGAGEGPVVLTLPRMFGARVYFVRDGKLDFFVNPGPSLVEPAFATPADPNYGRTWSFCEFTFNAQQLYANISYVDLVTALPIGLTLTGDATHTVAPLPAGALEKIADDLTTQASRDGQPWDKLIVRGDGGRVLRVISPQSVMAPYFDRPSEMPFRDAFDSYIERVWEKYRSEDLRVDLQGGRGVLAGRVSGDVLTFAGGHTFTKPSSRDVFTCNHGPFANNPNDPDDKKALLARISAAFNRTTLLTHPDQPNGATAADYYRDPRTNHWSRVVHANSPIGYAFPYDDVRPDGQPDVSGAAHDGNPKRFTVNVGS
>NZ_CP022438.1|WP_100109331.1|5592039_5592660_-|YceI-family-protein
MGLFNRKNDTAETTTAVATVDPALAGLTGEYTIDPAHSSIGFTVRHAMVTNVRGSFGEHEGTLQLDGAYPSRSTASIDVAMASIDTGIADRDGHLRSGDFFDVERFPKMTFRSTGAEQLGGDRYRIIGDLTIKDVTRPLAIDLEFQGSATDVYGNERVGFEGGTEILRSDWGLTWNAALEAGGVMVSDKVKLTFDISAIKAVAPAA
>NZ_CP022438.1|WP_100109330.1|5590605_5591793_+|S8-family-peptidase
MRNRTRLKAFAAVAVTTLLASAGPLSATARSAAPAPELAPLHRSANAVPGRYIVTLAEAADSAVMTGEVGVKALFTYSSALRGFAADLTEEQLRQIRLMPGVVAVEEDATVTATDAPSSLAPAASWGLDRIDQRKLPLDDDFAAADSGQGVNAYVLDTGIDYAHSEFGGRATFGFDAVGDGRRGQDCQGHGTHVAGTVGGRSYGVARKASLVSVRVLDCAGSGMLSSVIAGMDWVAANGKQPAVLNASLGSTKSTTVNNAADALADSGVLPVVAAGNETQNACNVSPASAERVLAVGATDSSDQQADFSNYGACLSLYAPGASIVSAKLGGGSVSQNGTSMASPHVAGVAALYKSEHPTATAAEVKSWLIDNSTKNVVTGIGPGSPNRLLHTGGL
>NZ_CP022438.1|WP_100109329.1|5587286_5588906_+|citramalate-synthase
MTTTAGDHDQQVDDSFHVFDTTLRDGAQREGINLTVADKLTIARHLDDFGVGFIEGGWPGANPRDTEFFARARQEITFRNAQLVAFGATRRAGARASEDPQVKALLDSGAPVITLVAKSHDRHVELALRTTLDENLEMVRDTVSYLREQGRRVFVDCEHFFDGYRANPEYAKAVVRTAHEAGADVVILCDTNGGMLPAQVQAVVSTVLADTGARLGIHAQDDTGCAVANTLAAVDAGATHVQCTANGYGERVGNANLFPVVAALELKYGKKVLPDGALADMTRVSHAIAEVVNLTPSTHQPYVGVSAFAHKAGLHASAIKVDPDLYQHIDPELVGNTMRMLVSDMAGRASIELKGKELGIDLGGDRELVGRVVERVKERELQGYTYEAADASFELLLRAEAEGRVRHYYRTESWRAIVEDRPDGTHANEATVKLWAKGERIVATAEGNGPVNALDRAMRVGLEKIYPQLAKLELIDYKVRILEGRHGTGSTTRVLITTGDGTGEWATVGVADNIIAASWQALEDAYTYGLLRAGVEPTE
>NZ_CP022438.1|WP_100111386.1|5586338_5586893_+|TetR-family-transcriptional-regulator
MLAAAMATIAERGLDGLTMAGLGRQVGMSSGHLLYYFGSKDELLLQTLEWSEGRLGLERGALLSRQAPARERLDAYVALYIPDGPRDPHWTLWLEVWNRSQNADADMRGRQAAIEGAWHRDLVALLAEGVSRGEFRAVDPDRFAARLRALLDGFSVHVAVGIPGVGREQVLMHVGEFLREGLLR
>NZ_CP022438.1|WP_100109328.1|5585208_5586279_+|agmatine-deiminase-family-protein
MTFRMPPEWAPHERTWMAWPGPNPTFTNDAELTGARTAWASVARAVRRFEPVTVVAGPGQSRSARELLGPDIDIVERDLDDAWMRDIGPTFVTDGSRLAAIDWVFNGWGAADWARWEHDSKIARHVADLAGVPVHPSPLVNEGGAIHVDGEGTVLLTDTVQLGPERNPEWTRAEVEAEIHARLGTKKAIWLPRGLSGDYGMYGTRGHVDIVAAFARPGVVVVHTQPDPSHPDHELCQANVALLSAETDAKGRRLEVVEVPAPTVLVDDKGEWVDYSYINHYICNGGVVLCGFDDPRDEIAAGIFRRLFPERTVTLVDARAIFAGGGGIHCITQQQPRVRPSQLRAAGDGGSGRTYT
>NZ_CP022438.1|WP_100109327.1|5583514_5585197_+|urease-subunit-alpha
MDPYEYASVHGPRAGDRVVLGDSGLVVRVESDAQKPGDEFLAGFGKTARDGLHLKAAAVRDTCDVVISNVLVIDAVQGIRKVSVGIREGRIHAVGRAGNPDTLDGVDVVVGTGTSIVSGEGLIATAGAVDTHVHLLSPRIMEASLASGVTTVIGQEFGPVWGVGVNSPWALKHAFNAFDAWPVNIGFLARGSSSDPAPLVEALAEGGASGFKVHEDMGAHTRALDTALRVAEEHDVQVALHSDGLNECLSVEDTLRVLDGRTIHAFHIEGCGGGHVPNVLKMAGVPNVIGSSTNPTLPFGRDAVAEHYGMIVSVHDLKTDLPGDAAMARDRIRSGTMGAEDVLHDLGAIGITSSDAQGMGRAGETVRRTFAMAGKMKAELGPMDGDGTHDDNARVLRYMAKLTINPALAHGLAHEIGSIEVGKMADIVLWRPEFFGAKPQLVLKSGFPAYGVVGDPNAATDTCEPLVLGPQFGAYGATPADISVSFVAQAAVEVGSDLMPTRRRRVAVRGTRGIGPRDLLLNSRLGDVSVDGRTGLVTLDGDPIRSEPAESISLNRLYFL
>NZ_CP022438.1|WP_100109337.1|5600827_5602033_-|erythromycin-esterase-family-protein
MATDIKDTAHAVEAAAVMRLLPVRPRLLALGEPTHGEDTLLEVRNELFRQLVEQEGYRTIAIESDCMMGLVVDDHVTSGTGTLDEVMEHGFGHGWGTSAANRELVRWMRAYNDGRPASERLRFAGFDGPLEITAAASPRQALTTLHGYLAARVDADLLPCTAKTLDRLLGTDDRWTNPAAMTDPSQSVGQSAEASQLRLLADDLVALLDAQTPHLITATSRDGWDRARLYGRTATGLLRYHYWMADTAPARMTRLIGLRDSMMADNLLAVAERGPALIHAHNSHLQREKSTMRMWDQPLLEWWSAGAIVSAHLGEEYAFVATALGTIRHRGVDTPPPDTVEGLLYALPKDRYVIDAPRLATALGDTRPAGRVSPWFGYSPLDPAHLADSDGIVFVKDVPQS
>NZ_CP022438.1|WP_100109338.1|5602091_5602841_+|MerR-family-DNA-binding-transcriptional-regulator
MRRNLQNGERLRPVDLARGHGLSTQAIRNYEEAGILPAAGRTPHGYRTYTSLHAGALSAFLALVPGHGHQTATSIMRAVNQGAVDEAFRLIDESHAQLLDDRRTLQAVESALRDLEPATAPEPGVGSEPVAVSGPGGTFIGTLAGKLGIRPATLRKWERAGLVRPRRDPRTGYRVYDDADVRDARLAHQLRRGGYLLEQIAPLIAQVRAAGGLEPLEAALCDWHGRLSARARAMLTGAAELEAYLRERG
>NZ_CP022438.1|WP_100109339.1|5603236_5603818_-|ATP-binding-protein
MDFASSSGSAARSTTSAKIVVAGGFGVGKTTFVGAVSEINPLRTEAVMTSASAGIDDLTHTGDKTTTTVAMDFGRITLDQDLILYLFGTPGQDRFWFMWDDLVRGAIGAVVLVDTRRLADCFPAVDYFENSGLPFVIALNGFDGHQPYNPEEVREALQIGPDTPIITTDARHRADAKSALITLVEHALMARLR
>NZ_CP022438.1|WP_100109340.1|5603798_5604404_-|DUF742-domain-containing-protein
MATPPGGRPYEGGHQPHGEHTDNRFNYPSTPGRQGAQQPYQQPQSPYEPSYAPSYDSSYGQPQPHRIEPVAPRRAQEPANASTAGPARHNPLVRPYAMTGGRTRPRYQLAIEALVSTTADPSRLQGQLPEHQRICRLCFEIKSVAEISALLSIPLGVARILVADLAEAGLVAIHQPGGDESAGGQPDVTLLERVLSGLRKL
>NZ_CP022438.1|WP_005311461.1|5604541_5604955_-|roadblock/LC7-domain-containing-protein
MSQAAQNLNWLITNFVDNTPGVSHTVVVSADGLLLAMSEGFPRDRADQLAAVASGLTSLTAGASRIFEGGAVNQTVVEMERGFLFIMSISDGSSLAVLAHPEADIGLVGYEMALLVDRAGSVLTPDLRAELQGSLLN
>NZ_CP022438.1|WP_100109341.1|5604965_5608271_-|HAMP-domain-containing-protein
MRRSKTSSAEQQARGNFTPPSRTAASPADASGASGTSPAVGRSSGTGSSSGRLSPRNWRVPTRLNAILLIPVLVGLMMGGFQVKQSIDTWSEAKDAEKTALIVRAASEYGQALLNERDLTAQPLLLATSEDARQVTVVTEAYDTTDAAKVKFDEAVADMPDGQGLDRRLQLFRQEEPKLADLRKAAYTKALDPVQTEEGYVKIQHVLMEFSNELGLGTGNVTSYGRTVYAVQLAKAAASLQRSIGMHLLLRPSKDEGVFDRQTVAFNSYNYLEQIAIGEYVSGGTEADTARLKEVMTGKATEGGKRLAAAGLNPPKGPDGSVFTGMATAIGSGISPTELKQQDVMPQTWMGAATAKFDGYTEIENDLVDRAVNEAAAISDDARNDAITTGAIVVIALLAAFILAGLMARQMSRSMRQLRTAAFGIAEQRLPMLVDQLSRTEPGRVDTRVQPIPINTQDEIGEVARAFDQVHREAVRLAAEQAMLRGNVNAIFTNLSRRNQSLIEGQLTLITDLENNEADPDQLENLFRLDHLATRMRRNGENLLVLAGEEPGRRWNQPVPLVDVLRAASSEVESYERIELSGVPETDIHGQAVTDLVHLLAELLENATTFSSPQTKVRVTATRLPDGRVMVEIHDKGIGLTAEDFADINHKLANPPTVDAAVSQRMGLFVVGRLADRHGIRVQLRPSGEQAGTTSLVMLPDAITHGGGGEALPEDDFTVSQIIPEQQSFESAPMRTAAELGFDDSRYEQPSEGNASQLDPVGRSLMREERRAALEAQAHGGERPLYRDEASYEQEQESQQQYGSEYGQEYAQGYTQNQQSAYEQNQQVGYEQNQQPGYDEYQGGYQETYQQQPAAGGYPEHTEQQDALQGAYAEATYQEPQTPEQQYDGQYDTQSHQAEWADQGGYQDAYEPEYRTESESSPGAPANAQERVGFDRPGPSPSSSHELTDAGLPRRGSSQKPPAQQSEPQWQQRSAEQAPSAGQSGQAAEAGSSTGSFGGGGSDTDSWRSKNDERWQRAEKLRDPKAGGVTSSGLPRRVPKANLIEGTAEQTPQGGPQVSRAPEDVRGRLSNLRRGVQQGRSAGTDTNGPGLGPGSTYNQER
>NZ_CP022438.1|WP_100109342.1|5608621_5609203_-|ATP-binding-protein
MDFASSSGGAARSTTSAKIVVAGGFGVGKTTFVGAVSEINPLRTEAVMTSASAGIDDLTHTGDKTTTTVAMDFGRITLDQDLILYLFGTPGQDRFWFMWDDLVRGAIGAVVLVDTRRLADCFPAVDYFENSGLPFVIALNGFDGYQPYNPEEVREALQIGPDTPIITTDARHRADAKSALITLVEHALMARLK
>NZ_CP022438.1|WP_005311458.1|5609183_5609588_-|DUF742-domain-containing-protein
MTPPPASHDPYGTSVDAYGDEGDQPLVRPYAMTGGRTRPRYQLAIEALVSTTADPALLAGLLPEHQRICHLCREVKSVAEISALLSMPLGVARILVADLAEAGMVAIHQPGNGEAGGTPDVTLLERVLSGLRKL
>NZ_CP022438.1|WP_005311457.1|5609724_5610138_-|roadblock/LC7-domain-containing-protein
MSQAAQNLNWLITNFVDNTPGVSHTVVVSADGLLLAMSEGFPRDRADQLAAVASGLTSLTAGASRIFEGGPVSQTVVEMERGFLFLMSVSDGSSLAVLAHPDCDIGLVGYEMALLVDRAGSVLTPDLRAELQGSLLH
>NZ_CP022438.1|WP_100109343.1|5610147_5613783_-|sensor-histidine-kinase
MGRPQAHQGQGEAAAEQEPRGTDRGSSGQHTPGQGPAASGDGGERSGRAGARTPGGRTTGVKPAPGDVAASSERSKGPTDTGSRIALRNWRISTRLVSLLTLPVVAATTLGGLRINESMDDMKQLDHMQLLTKMTTEATELAHALQQERDLSAGPLVNGAVDTDFKVSGPRTQTDRARKAFLDATRSIPNKDEDQALESIRANANQIAVQVNNLKNIRNSAYKGKIPKSQTIESYSRLIESLLSLSQDMAQATSNPEMIKRTRALAAFSSAKEYASIQRAVIAAALPGGDSDSVPGLSENDRLYGQAALENGETELKTFGSIYESTGGDSQELMAPLENENPTITAAEQYAKRVLENENGLAQLPSRSHLDWTDDYSVRINAMKTIEQTLLGQMEAEARKLREASQQDAIINGALILIVLGVSLVGAFVVARSMIRSLRRLQDTATKVAQDRLPELVKQLSESDPQDVDTSVESVGVHSRDEIGKVAAAFDDVHREAVRLAAEQALLRGNVNAMFTNLSRRSQGLIQRQLSLISELESREADPDQLSSLFKLDHLATRMRRNGENLLVLAGEEPGRRWTRPVPLVDVLRAAASEVEQYERIELASVPATEVAGRVVNDLVHLLAELLENATSFSSPQTKVRVTGHALPDGRVLVEIHDTGIGLSPEDLAAINERLASPPTVDVSVSRRMGLFVVGRLSLRHGIRIQLRPSDSGGTTALVMLPVDVAHGGKKAPAKPGAGGQEATAPTAGGAPAGLPGRPGAAGGRPGLGAGNGGPLGGAPSGTGGAPGNRLAGAQRGQVGAGSAPRAALPARDGAGRPVQGQPGHGQGQPSQGQPGQGGRHGSTQDASRQGGAFGAGPAQGAPVRNEAPQNGFRKGAPAGGDRGRQLPAPGGPRPELPGGSPAPRPGESIPPRPQRPQTTSWGNDQPPQRPSADLPRGHEDHDSSRGPGSTAEFARPDFNAGPPQAGRPAGPSAAGQFVRPDVYGAPNPSGAGRHGRPDAQDPAATAQFARPDFGAPQPPAPQRRDESSFAPPRPAAGLPAPQQPEALPPASGPGDGRTPLYDTLETNWFRGAQGGGRPAEQPQAPAERPAQSMPQRTPAPDPATPAGAPQASAAWRSSPNDELVRQAERVRKPAAGGVTTSGLPRRVPRANLVAGTAQEQNHQAGPQVSRAPDDVRGRLTNLRRGIQQGRQQNSSTTGSFDLGPSHQQER

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Crispr_ID: NZ_CP022438_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_11

5718965-5719050

Orphan

Consensus_repeat	Method
CCCGCGCCTCAATCGCCGGCGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022438_11

>merge|NZ_CP022438|11|5718965-5719050|CRISPRCasFinder
CCCGCGCCTCAATCGCCGGCGGGGCCGGAGCGGGCCGGTCTTGTCGGGGCTTTGCCCGAGCCCCGCGCCTCAATCGCCGGCGGGGC

>NZ_CP022438|11|10|5718965-5719050|CRISPRCasFinder
CCCGCGCCTCAATCGCCGGCGGGGC	CGGAGCGGGCCGGTCTTGTCGGGGCTTTGCCCGAGC
CCCGCGCCTCAATCGCCGGCGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100109422.1\|5724973_5725489_+\|HXXEE-domain-containing-protein	unknown	unknown	gnl\|CDD\|379370
NZ_CP022438.1\|WP_100109413.1\|5711680_5712181_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP022438.1\|WP_100109425.1\|5728141_5728840_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP022438.1\|WP_100109423.1\|5726260_5726968_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176499
NZ_CP022438.1\|WP_100109417.1\|5717748_5718876_-\|Rossmann-fold-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP022438.1\|WP_100109416.1\|5716720_5717752_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP022438.1\|WP_100109411.1\|5709660_5710812_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP022438.1\|WP_100111400.1\|5708211_5708976_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NZ_CP022438.1\|WP_100109418.1\|5719120_5720230_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100109419.1\|5721128_5722508_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235823
NZ_CP022438.1\|WP_100109410.1\|5707216_5708053_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP022438.1\|WP_100109424.1\|5726969_5727995_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_CP022438.1\|WP_100109412.1\|5711080_5711635_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373158
NZ_CP022438.1\|WP_100111402.1\|5720211_5720940_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP022438.1\|WP_100111401.1\|5709103_5709661_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP022438.1\|WP_100109420.1\|5722492_5723008_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214628
NZ_CP022438.1\|WP_100109414.1\|5712681_5713788_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|184689
NZ_CP022438.1\|WP_100109421.1\|5723172_5724612_+\|gamma-aminobutyraldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143411
NZ_CP022438.1\|WP_100109415.1\|5713967_5715065_+\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270263
NZ_CP022438.1\|WP_100109426.1\|5728812_5729385_-\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|378035

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100109422.1\|5724973_5725489_+\|HXXEE-domain-containing-protein	gnl\|CDD\|379370	pfam13787, HXXEE, Protein of unknown function with HXXEE motif. This domain contains an HXXEE motif, another conserved histidine and a YXPG motif. Its function is unknown.	1.56046e-26
NZ_CP022438.1\|WP_100109413.1\|5711680_5712181_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000100239
NZ_CP022438.1\|WP_100109425.1\|5728141_5728840_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	1.6389e-11
NZ_CP022438.1\|WP_100109423.1\|5726260_5726968_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176499	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases.	1.43044e-44
NZ_CP022438.1\|WP_100109417.1\|5717748_5718876_-\|Rossmann-fold-nucleotide-binding-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	3.82126e-13
NZ_CP022438.1\|WP_100109416.1\|5716720_5717752_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.16317e-121
NZ_CP022438.1\|WP_100109411.1\|5709660_5710812_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	3.25447e-76
NZ_CP022438.1\|WP_100111400.1\|5708211_5708976_+\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	3.44838e-135
NZ_CP022438.1\|WP_100109419.1\|5721128_5722508_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235823	PRK06541, PRK06541, aspartate aminotransferase family protein.	0
NZ_CP022438.1\|WP_100109410.1\|5707216_5708053_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.81459e-125
NZ_CP022438.1\|WP_100109424.1\|5726969_5727995_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	9.82476e-145
NZ_CP022438.1\|WP_100109412.1\|5711080_5711635_+\|hypothetical-protein	gnl\|CDD\|373158	pfam14610, DUF4448, Protein of unknown function (DUF4448). This is a family of predicted membrane glycoproteins from fungi. However there appears, visually, to be some similarity with the family of GPI-anchored fungal proteins, pfam10342.	0.000973766
NZ_CP022438.1\|WP_100111401.1\|5709103_5709661_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	7.76173e-101
NZ_CP022438.1\|WP_100111402.1\|5720211_5720940_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.07286e-65
NZ_CP022438.1\|WP_100109420.1\|5722492_5723008_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|214628	smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli).	9.63848e-31
NZ_CP022438.1\|WP_100109414.1\|5712681_5713788_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|184689	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP022438.1\|WP_100109421.1\|5723172_5724612_+\|gamma-aminobutyraldehyde-dehydrogenase	gnl\|CDD\|143411	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.	0
NZ_CP022438.1\|WP_100109415.1\|5713967_5715065_+\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270263	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily. Thiamin-binding protein TbpA is the periplasmic component of ABC-type transporter in E. coli, while the transmembrane permease and ATPase are ThiP and ThiQ, respectively. Thiamin (vitamin B1) is an essential confactor in all living systems that most prokaryotes, plants, and fungi can synthesized thiamin. However, in vertebrates, thiamine cannot be synthesized and must therefore be obtained through dietary absorption. In addition to thiamin biosynthesis, most organisms can import thiamin using specific transporters. After binding thiamine with high affinity, TbpA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The thiamine-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.56415e-104
NZ_CP022438.1\|WP_100109426.1\|5728812_5729385_-\|NADAR-family-protein	gnl\|CDD\|378035	pfam08719, DUF1768, Domain of unknown function (DUF1768). This is a domain of unknown function. It is alpha helical in structure. The GO annotation for this protein suggests it is involved in nematode larval development and has a positive regulation on growth rate.	8.04872e-77

>NZ_CP022438.1|WP_100109417.1|5717748_5718876_-|Rossmann-fold-nucleotide-binding-protein
MTATPHDREIESLEEFDQVVAHGSLVGYRLQSLDLTARTCDLLRVDATAAVFLGCRMEPDAAAKVRAEGALVFPPVPDLPFDPYRGRLYTPDDLFAGLTDSGGGYEATPDARAYAWFQRTKADGDIYASMLRAVHDDSISDALDELLVGKQVVGVMGGHAMGRGTDAYAGAARLGRELSRAGFTVATGGGPGAMEAANLGAYAAPHPDGMLDDALLLLAKAPSFVPSVTDWAEAAFEVRHRWPRGGDSVGIPTWFYGHEPPNAFADHIAKYFANATREDGLLARSTAGVIFLPGAAGTLQEVFDNATPNYYESRGEPTPMVLVNRSHWTDHLPAWPLLRSLARGRSMESRIALVDSVEEAPAVLKRLLAATPDAL
>NZ_CP022438.1|WP_100109416.1|5716720_5717752_+|ABC-transporter-ATP-binding-protein
MTLLELRGVTVRFGPRTALDTVDLQVAEHEIVCLLGPSGSGKSTLLRAVAGLQAVDAGRVLLGGADQAGVPVHRRGVGLMFQDHQLFPQRDVGGNVAFGLRMRGADRGEQARRTDELLRLVGLPGAQKRSVAALSGGEQQRVALARALAPEPRLLMLDEPLGQLDRGLRERLVVELRGLFGRLGTTVLAVTHDQGEAFALADRVVVMRDGRIAQAGTPLEVWQRPASPFVARFLGFENLVAASVGGAAADTVWGKLPVPDGSPQGARTLLVRPDGVRITDPSQGLRCTVESRTFRGTHVAVRLRPDDGPELEAECSLAQAPEEGAAVGVVFAADEVVVLGPEA
>NZ_CP022438.1|WP_100109415.1|5713967_5715065_+|thiamine-ABC-transporter-substrate-binding-protein
MNSQLRRAVGTALVGALGVSTLAACGGESKDSGSGDGSKSRTVTLVSHESFAASEAVLKEFTRQTGYTVKVLKSGDAGAALNKEILTKGSPQGDVFFGVDNTLLSRALDNDLFTPYKAKGLDQVVPEVQLDADKHRVTPVDTGDICVNYDKKFFADRKLAPPKTFADLAKPEYKNMLVVENAATSSPGLGFLLGSVGEYGESGWQGYWKKLKDNGVKVVDGWEQAYNEEFSGSAGGKKAGADRPLVVSYASSPPVEVLYSDPQPTEAPTGVATGTCFRQIEFAGLLEGAKNEAGGKALLDFLISKKFQEDMPLNMFVNPVMKDAKLPELFTEHGAVIEKPETVAADTIAKNREQWVRSWSSLVVK
>NZ_CP022438.1|WP_100109414.1|5712681_5713788_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MPKPGELTFVAPRGAKQPPRHLADLTPAERKEAVAAIGEKPFRAKQLSQHYFARYAHDPAQWTDIPAAAREKLAGELLPDLMSVVRHISCDSDTTRKTLWRLHDGTLVESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMGMGEPLANYKRVVGAVRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEYALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAQER
>NZ_CP022438.1|WP_100109413.1|5711680_5712181_+|hypothetical-protein
MEREHTPGPTESGLSTDDLAAPLERDAGRRSEEQPPSFPGEAPGATPEADAAPEAASSDSGEPRPVSDAPEVSAQEEVPQLLTSQDEEGFRTRWQEIQNRFVDDPREAVHEADGLVADVMQTLATTFSQHKQELEGQWSQGGEADTENLRMALRKYRSFFNRLLSS
>NZ_CP022438.1|WP_100109412.1|5711080_5711635_+|hypothetical-protein
MSTGTLLAIIVPVVVVVAALAALGWYTARRRRLRERFGPEYGRTVEEAGSRVAAERELSAREKRHDALDIRPLSPAARDRYAEDWQKVQGEFVDHPEDAVHEADLLVASLMRERGYPTDDLAQKLKDLSVEHGRTVEHYRAAHDVNESSLQHSATTEQLRGAMVHYRALFDELLSDGGRPQAHT
>NZ_CP022438.1|WP_100109411.1|5709660_5710812_+|phosphatidate-cytidylyltransferase
MNDSSWGPSHGAGYAGAWPPPDQGPLPAGPAHDGHDARYTSQTQPMPIVPDFPDAGRDTGGRRGEDREARDRGAARLGGPLFRDEMPQEPMPTPPPSGEPPPQSPRPEPPQKKRAGRDLRAAIGVGVGLGAVIVVSLFFVKAVFVGVIAVAVVVGVWELTSRLEERKQIKAPLVPLAVGGAAMVVAGYVAGAEGAWVAMALTALAVLLWRMTEPPEGYLKDVTAGIFAAFYVPFLATFVALMLTADDGPERVITFLLLTVVSDTGAYAVGWRFGRTKLAPRISPGKTREGLLGAVSFAMAAGALCMQFLVDDGIWWQGLLLGLAVAVSATLGDLGESMIKRDLGIKDMGTLLPGHGGIMDRLDSLLPTAPVVWLLLVLFVGSG
>NZ_CP022438.1|WP_100111401.1|5709103_5709661_+|ribosome-recycling-factor
MIEETLLEAEEKMEKAVLVAKDDFAAIRTGRAHPAMFNKIVADYYGALTPINQLASFSVPEPRMAVVTPFDKSALRNIEQAIRDSDLGVNPSNDGNIIRVVFPELTQDRRKEYIKVAKTKAEDAKISIRSVRRKAKETIDKLIKDGEVGEDEGRRAEKELDDTTAKYVAQVDELLKHKEAELLEV
>NZ_CP022438.1|WP_100111400.1|5708211_5708976_+|UMP-kinase
MNHGAVQSDDNHGKKSGRFMLKLSGEAFAGGGGLGVDPDVVHAIAREIAAVVRDGAEIAVVIGGGNFFRGAELQQRGMDRARSDYMGMLGTVMNCLALQDFLEKEGIDSRVQTAITMGQVAEPYIPLRAVRHLEKGRVVIFGAGMGMPYFSTDTTAAQRALEIDAEALLMGKNGVDGVYDSDPKANADAVKFDALEYGEVLSRNLKVADATAITLCRDNALPILVFELLTEGNIARAVKGEKIGTLVSDRGTRA
>NZ_CP022438.1|WP_100109410.1|5707216_5708053_+|elongation-factor-Ts
MANYTAADVKKLRELTGAGMMDCKKALDEAEGNVDKAVEALRIKGQKGVAKREGRSAENGAVVSLIADDSTSGVIVELKCETDFVAKGDKFQAVAGALAAHVAKTSPADLEALLGSEIEPGKTVQAYVDEANANLGEKIVLDRFAQFSGAYVASYMHRTMPDLPPQIGVLVELDKADADLAKGVAQHIAAFAPKYLSREDVPAEVVESERRVAEETTRAEGKPEAALPKIVEGRVNGFFKEATLLGQPYALDNKKTVQQILDEAGVTLKRFARIKVGI
>NZ_CP022438.1|WP_100109418.1|5719120_5720230_-|hypothetical-protein
MLALRLARGAHPLVLLRRLMVAAASAGVGFLLLCTLMYALSHPEDSAAVVRLLWCGLPLATTVYLAVTVARTDPGTRPRPGLFAVGLGPFRLCALAAASTALTCTLGSMVALLFFLHLRGDLSGLPFDGAAAGMLAAEQPLPLPATLTLLALVPLLATVATAVVLRPRAAAPDAEESSGTPGGLPWGIALVALGLAVETYTSDGRADDRPAGVLAGWALTAVGLWLVGPGVTHLCGRLLQSVRPGATRLLAGRILMAESRRLGPPLGVMCAVASGAVTATAAYGSAPQPWSPLTTLGATLVVVCTATTLLTTAIEVRGARSEATTALRIVGAPATILRRAAALRAGVLVTVFVPLTLTVGALAAAPLTR
>NZ_CP022438.1|WP_100111402.1|5720211_5720940_-|ATP-binding-cassette-domain-containing-protein
MVTPPDNDVIWARSLHHAHRGSPALVGVSLGVREGEILAVHGARGSGKTTLLQCLSGRLVAQQGEVWFNSSPVHTMPATARERLRRDRFGWIDPEPTLVPELHAWENAALPLLLAGVSRRAAKTTALEWMERLDIGTCANKRPCTLVRAEQQRVAVARALVTTPSVLFADEPTASLHSRDRVHVLRTLAAAVRSHRITMVLATHDPDVAALADRTITIADGRRVASPAATDAEGRAACSLSV
>NZ_CP022438.1|WP_100109419.1|5721128_5722508_-|aspartate-aminotransferase-family-protein
MGNPIAVSKDLSRTAYDHLWMHFTRMSSYENAPVPTIVRGEGTYIYDDKGKRYLDGLAGLFVVQAGHGRHELAETAYKQAQELAFFPVWSYAHPKAVELAERLAHHAPGDLNKVFFTTGGGEAVETAWKLAKQYFKLTGKPTKYKVISRAVAYHGTPQGALSITGLPSLKAPFEPLVPGAHKVPNTNIYRAPIHGDDPEAFGRWAADQIEQQILFEGPETVAAVFLEPVQNAGGCFPPPPGYFQRVREICDQYDVLLVSDEVICAFGRLGTMFACDKFGYVPDMITCAKGMTSGYSPIGACIISDRLAEPFYKGDNTFLHGYTFGGHPVSAAVGLANLDIFEREGLNQHVLDNEGNFLSTLQKLHDLPIVGDVRGNGFFYGIELVKDKATKESFTDEETERVLYGFLSKALYDNGLYCRADDRGDPVVQLAPPLISDQSTFDEIEQILRNVLAEAWTKL
>NZ_CP022438.1|WP_100109420.1|5722492_5723008_-|Lrp/AsnC-family-transcriptional-regulator
MQSEVVASRSADSRNGTASGSSTPTIDAVSLAIIEQLQEDGRRPYAAIGKAVGLSEAAVRQRVQKLLDQGVMQIVAVTDPLTVGLRRQAMVGITVEGDLDPVADALTAMAECEYVVMTAGSFDLMVEIVCEDDDHLLEVINKRIRALPGVRSTESFVYLKLKKQTYMWGTR
>NZ_CP022438.1|WP_100109421.1|5723172_5724612_+|gamma-aminobutyraldehyde-dehydrogenase
MTTELRRLRNYINGEFKDAADGRTIDIVNPATGEVYATSPLSGQADVDAAMEAAAAAFPAWRDTTPAERQKVLLKIADAFEERAEDLIAAESENTGKPLGLTRTEEIPPMVDQIRFFAGAARMLEGRSAGEYMEGMTSIIRRDPVGVCAQVAPWTYPMMMPVWKFAPALAAGNTVVLKPSDTTHASTVLMSEIIGAIAPKGVFNVVCGDRDTGRAMVEHPIPAMASITGSVRAGIQVAASAAKDVKRVHLELGGKAPVVVFEDTDIDKAVEDISVAGFFNAGQDCTAATRVLVHESIHDEFVSALAKAAAATRTGAPDDEDVLYGPLNNANQLDQVTGFIDRLPAHAKVEAGGQRVGDKGYFYAPTVVSGLKQDDEIIQNEVFGPVITVQSFSDEAQALEWANGVEYALASSVWTKDHARAMRMSKSLDFGCVWINTHIPLVAEMPHGGFKKSGYGKDLSAYGFDDYTRIKHVMTSLDG
>NZ_CP022438.1|WP_100109422.1|5724973_5725489_+|HXXEE-domain-containing-protein
MNATVTYGLLAAWALHDLEELATGPRWIRRNVPLLRKRFPQVPERVWRAVESVDQREFTAAVGVMAAIVGAAAVAGHRTGGRSAFYQGAVDGFGLHGLVHIAQAAAVRGYTPGSVTSPLIVVPFALWARGRLRRGGVLRPARARNAAAGLAVAAGATAVAHLVGRRISGTR
>NZ_CP022438.1|WP_100109423.1|5726260_5726968_-|glycerophosphodiester-phosphodiesterase
MRAVTVVAHRGDPYRFRENTLPSLRSALERGADAVEIDVRVTRDGVPVLLHDATLKRLWGHDRPLARLTKAEVDRLCHGGVPSLHEALTGLGPHRLMIDLPGATPESVRRVLDTVRECGAEEHVYYCAGPRTMLAVRAADGSAEIAMTWTTLAPPRPALLHAVKPRWLNYRFGLVGRELTDRVHRDGLLLSAWTADTRRTMRRLIGCGVDSITTNRADALRAVLDDPRSPEGARR
>NZ_CP022438.1|WP_100109424.1|5726969_5727995_-|adenosine-deaminase
MTDLHPFIAGLPKAELHVHHVGSASPRIVAELAANHPDSKVPTDPEALADYFTFTDFAHFVEVYLSVVDLIRTPDDVRLLTFEVARDMARQNIRYAELTITPFSSTRRGIEEKAFMAAIEDARRAAETELGVVLRWCFDIPGEAGLDAAEETARLAVDLHPEGLVSFGLGGPEIGVPRPQFKPYFDRAIAAGLRSVPHAGETTGPQTVWDALNDLGAERIGHGTSAVQDPRLLAHLAEHRIPLEVCPTSNIATRAVARLDEHPVKEMVSAGVLVTINSDDPPMFGTDLNNEYGVAARLLDLDERGLAGLAKNAVEASFLDPAGKARIVSEIDAYTTEWLAH
>NZ_CP022438.1|WP_100109425.1|5728141_5728840_+|DUF4190-domain-containing-protein
MSDNQAQPPGGPQPNDPWAPPESSSAAGRVPMDKPAVGPPPGVHDQPTVISMPAADDTGSVPPPPVAPGGPAQPAAGAYGYPAAQSLPHPPATGAPGFGAPDPYGAGYPGYPGYGQTAGWQQQPANGMGITAMVLGILSVCLFCLYGVVAIVLGILALIFGILGRKRAQRGEATNGGMALAGIILGVCGIVIGAVVIALIAWGITTAINEENKQDDYDYDSYSNYLVVDVTR
>NZ_CP022438.1|WP_100109426.1|5728812_5729385_-|NADAR-family-protein
MGIDELIKQTAEGQRVKYLHFWGHTARGDGTIGASCLSQWWPSPFDVDGVRYETAEHWMMASKARLFGDAEAERVALAARTPAEAKKAGRLVRGFDDAVWKRERFGVVRSGSVHKFGQDASLCDFLLATGDRVLVEASPMDRIWGIGLAADDERAQDPARWRGLNLLGFALMEAREELRGPDQRVTSTTR

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Crispr_ID: NZ_CP022438_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022438_12

7000916-7001109

Orphan

Consensus_repeat	Method
CGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTCCGACCAGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP022438_12

>merge|NZ_CP022438|12|7000916-7001109|CRISPRCasFinder
TGCCCCGCGCTCCACCCGGCGCCCGTGCCGGGTTGCGCTCGGGCTGCGTACCGGGGTTGGGCTCGGGCTTCGCGTGGGGCTGCGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTGCGACCAGG

>NZ_CP022438|12|11|7000916-7001109|CRISPRCasFinder
TGCCCCGCGCTCCACCCGGCGCCCGTGCCGGGTTGCGCTCGGG	CTGCGTACCGGGGTTGGGCTCGGGCTTCGCGTGGGGCTG
CGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTCCGACCAGG	GCCCGTGCCGGGTTCCGACCAGGGCC
CGTGCCGGGTTCCGACCAGGGCCCGTGCCGGGTTGCGACCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022438.1\|WP_100110174.1\|6994427_6997241_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP022438.1\|WP_100110171.1\|6991568_6992474_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115
NZ_CP022438.1\|WP_100111507.1\|6989508_6990414_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133411
NZ_CP022438.1\|WP_100111506.1\|6987875_6989381_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423
NZ_CP022438.1\|WP_100110181.1\|7008391_7009837_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP022438.1\|WP_100111511.1\|7005159_7005930_+\|3-oxoadipate--succinyl-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|224968
NZ_CP022438.1\|WP_100110177.1\|7003113_7004031_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP022438.1\|WP_100111510.1\|7004164_7005082_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP022438.1\|WP_100110184.1\|7011633_7012281_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP022438.1\|WP_100110172.1\|6992571_6993153_+\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|380416
NZ_CP022438.1\|WP_100110183.1\|7011024_7011555_-\|toxin-antitoxin-system,-toxin-component	unknown	unknown	unknown
NZ_CP022438.1\|WP_100111508.1\|6997448_6997952_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP022438.1\|WP_100110169.1\|6986474_6987626_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP022438.1\|WP_100110180.1\|7006746_7008018_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP022438.1\|WP_100110176.1\|7001782_7003006_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235741
NZ_CP022438.1\|WP_100110173.1\|6993152_6994205_+\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP022438.1\|WP_100110175.1\|6999378_7000866_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP022438.1\|WP_100110182.1\|7009833_7011021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022438.1\|WP_100110179.1\|7006035_7006746_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236211
NZ_CP022438.1\|WP_100111509.1\|6998039_6999209_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|237170

Protein	Function_ID	Function_description	E-value
NZ_CP022438.1\|WP_100110174.1\|6994427_6997241_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.99726e-15
NZ_CP022438.1\|WP_100110171.1\|6991568_6992474_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.39071e-60
NZ_CP022438.1\|WP_100111507.1\|6989508_6990414_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133411	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	7.19419e-25
NZ_CP022438.1\|WP_100111506.1\|6987875_6989381_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.80802e-09
NZ_CP022438.1\|WP_100110181.1\|7008391_7009837_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	4.00056e-09
NZ_CP022438.1\|WP_100111511.1\|7005159_7005930_+\|3-oxoadipate--succinyl-CoA-transferase-subunit-B	gnl\|CDD\|224968	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism].	4.11339e-43
NZ_CP022438.1\|WP_100110177.1\|7003113_7004031_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	7.8471e-64
NZ_CP022438.1\|WP_100111510.1\|7004164_7005082_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	5.27813e-54
NZ_CP022438.1\|WP_100110184.1\|7011633_7012281_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	4.21685e-07
NZ_CP022438.1\|WP_100110172.1\|6992571_6993153_+\|cysteine-dioxygenase	gnl\|CDD\|380416	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain. This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.13819e-30
NZ_CP022438.1\|WP_100111508.1\|6997448_6997952_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	3.54837e-08
NZ_CP022438.1\|WP_100110169.1\|6986474_6987626_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.14133e-56
NZ_CP022438.1\|WP_100110180.1\|7006746_7008018_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.29304e-48
NZ_CP022438.1\|WP_100110176.1\|7001782_7003006_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|235741	PRK06205, PRK06205, acetyl-CoA C-acetyltransferase.	0
NZ_CP022438.1\|WP_100110173.1\|6993152_6994205_+\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	3.15332e-62
NZ_CP022438.1\|WP_100110175.1\|6999378_7000866_+\|xylulokinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	6.9861e-136
NZ_CP022438.1\|WP_100110179.1\|7006035_7006746_+\|hypothetical-protein	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	2.0389e-47
NZ_CP022438.1\|WP_100111509.1\|6998039_6999209_-\|xylose-isomerase	gnl\|CDD\|237170	PRK12677, PRK12677, xylose isomerase; Provisional.	0

>NZ_CP022438.1|WP_100110175.1|6999378_7000866_+|xylulokinase
MPANAVVIGVDSSTQSTKAAFTDAETGRLLAVGRAPHRVSGAGGARETDPEVWWAALAEAVAAGLKELDGLGVTAPAVTGIAVAGQQHGLVVLDRAGTPLRPALLWNDTRSAPQAASLTEALGGRDAWTARTGSVPVASMTATKWQWLRENEPAVADAAAAVRLPHDFLTERLAGVAATDPGDASGTCWYSTATGAYDPVLLDLVGLDAALLPPVAPTGGTRVGSLTAAAAERLGLPAGIAVAAGTGDNMAAAVGLGLGGAGLLDHPVLSLGTSGTVFAATRTRPASAALAGFAAADGTYLPLACTLNCTLAVDKVASLLGLDREAAEAGGEVVLLPYLDGERTPDLPGASGLLTGLRHTTTRQQILGAAYEGAAVTVLRALDEVLRACGQDPAAPDTAARPLRLVGGGAMGRHWVETVRRLSGRPLLIPSSGELVALGAAALAAAAATGEDAVALATRWGAGSGKELPAVERDVEAWERVSSVLGRASGSLLGG
>NZ_CP022438.1|WP_100111509.1|6998039_6999209_-|xylose-isomerase
MTERFIPTPEDKFSFGLWTVGWQGRDPFGDATRPHLDPAESVRRLAGLGAYGVTFHDDDLIPFGANGSERESHIKRFRQALDDTGLVVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTVRNIDLAAELGARTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTEQGYDLRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHSIAQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDLRSAFWLVDLLETAGYAGPRHFDFKPPRTEDLDGVWESAAGCMRNYLILKERAAAFRADPEVRDALRASRLDELALPTAEDGLAALLADRSAFEEYDVDAAAERGMAFERLDQLAMDHLLGVR
>NZ_CP022438.1|WP_100111508.1|6997448_6997952_+|ATP-binding-protein
MAIKRAVNRASERAGPTSALRSLAHCAMPASPQAAGALRHFARAVARRWRLADHFDEALSVIVTELVTNVVLHSGSPWVSTVISVRGNALTVEVMDGGCWKHRVTRRKEPLDANVRCGRGLRLVEYYATRIVTQRMEKGSVVLAEIALHGEAPDVRDAAEAIEPRPL
>NZ_CP022438.1|WP_100110174.1|6994427_6997241_-|helix-turn-helix-transcriptional-regulator
MDTRSDEAADRWLERTLSDPSAGGSGPGGPALLLVEGAAGTGKTRLATRLVETAGGRSVRSVTVSFSSYGATVGVPRPPGPKAGDVPTPRTPPPPARAADDPPAADLPSAVDSLLEQGDRFLLVAEDVHRADRASLDLLRGLVERAPAGLTAVVTYRPEELREPGLALGKGAHFPAALAVLRLRLGPLDAGQVRTLVAEGLGESRCPTDLIMRLFECSGGVPQVVADVVALLRESGDGRERLSVRDLEAVGVPPRLAELALGRTAALRERIRPVAWAAAVLDEPVEAEELSAVAGLRREEGTDALVEALRAGVLREDGEGRYGFFVPMAAAAVYGQVPGPVRREMHRRAATALGRRNPVPWVPLARHRRHGGQVKAWLRAVEHAALQCAADGDHQAAIDLLERTLSRPTVPLSARARLAPLLAHSAVLGLRSDQTVTVLRQILDEQSLPAAVRGQIRLDLGLLLCNQAVAGMQGWLELQQAVEELEERPLMAARAMAALAMPLLSTVPLERNLYWLERAEKAGADSGDEEAATAVAANRAGTLMYIGDPSAWQVLEQLPRETDDPACRQHVARGLCNAADGALWLGQLGPARGLLAEGVELAARSGASYVEQGARGTLLLLDWAEGNWAELTTRARAFVAEADTMPGQGVDGRTVLGLMALSRGEWQQATAWLAGEGSQETNGSAVPHTATASGALIRMALVRDDVESAVAEASMAWDRIRDKGVWVWAAELAPWAVDATLRAGRRDTARGMVLEYEVGLEGRQAPASSAALNWCRALLAEADGEHREAAELYRRAAILYAGLPRPYATVLATEGAARCRLASGADTAAAVGELTSCVQQLTELGAVWDAARIRAELRAHQGADEQRPRGRPSYGDQLSPREQEVADLAATGLTNREIAATLHLSPRTVEQHVARARRKLESQSRQNLSRTRSQRPD
>NZ_CP022438.1|WP_100110173.1|6993152_6994205_+|putative-sulfate-exporter-family-transporter
MALLRERPAAPSRSAPAAGRRRGLTLAVLGVALAWCVHRLLPGVPTLTAAVVLGVLAAHLPLLRAAVRGAARPGLSYAGRRLMRAGIVLLGLQLGLDDVRRLGWATVAMVLVVVVATMLGTWWLGRRLGLPGDQPLLVATGYAVCGASAIGAVSEATDSDERDAATAVALVTLCGTLAIVVLPLLQGPLVLSDEEFGRWVGASVHDVGQVVATAQTAGGPALGEAVLVKLMRVALLAPLVAVVALSVRRGRKAEAGSRGAGRRRVPLVPLFVVGFLAAVAVRGTGLLPAEALEVAHTGQELLLAAALFGLGSAVDLPSLTRTGGRVAALGLSAWLVVAGVSYAGVLLVAG
>NZ_CP022438.1|WP_100110172.1|6992571_6993153_+|cysteine-dioxygenase
MTSASTAPGAFTAARTTERLDALIADVREAVGRGLPPDPTAYLVGERLAPYLGAPDLLTAEQRESDPTRYRQHLLHAEHDGSFSVVALVWLPGQGTSVHDHVSWCTTGVHEGQERERRYRLVPATGADDTARLVATADVVNAQGEFCGFAPPGDIHRVWNAGPRAAVSLHVYGADISRLRTSVRRVYDLPADR
>NZ_CP022438.1|WP_100110171.1|6991568_6992474_+|LysR-family-transcriptional-regulator
MFDSRHIMTFHEVVRTGSYSAAARALGYTQPAITQQMKALERDVGTALFVRVGRGMRLTEAGEALARHTTTILDSMSAAQEQMNALTRLRAGRVRICAFPSANSTLVPETLARLTAAHPAIRVDLLENEPPESLRRLARGECDISLAFTYPGLHEQVPDELVEIPLLEDQLTVLLPAGHHLARRRVVRLTDLEGERWIAGCPRCRANLLHECAEAGFVPDIAFMTDDNLAVQSLVAEGLGVAMIPALVLNFMRHAKVAGRPLQPASRRKISAYVLKEHLRVPATALVLDELRTVAANKTGC
>NZ_CP022438.1|WP_100111507.1|6989508_6990414_+|MerR-family-transcriptional-regulator
MWSIGELAERAGVTVKTVRFYSDRGLLPEATRSSGGHRRYGPEAVDRLRLIRSLRTLDLPVPDVGRILDHEDALEDVVARQLRAVGSQLAALRWREAALQLLRDCTPEERADRLRLIGAVSVPPSTAPMARFWRRWLLPARLPARLVSAIVDQAVPQPPDDPAPEQVLAFARLHALTTADCSGTGPCQPAAHRPETGFRAAVLYDGLAEAYALASAQMLAQRPPHQGEALDCFVSAYAHACRARDTPAFRHGLAGRLAADPRIDGYWQLTAELRGPSEPTAGAAHDWLCAALDLRTARPAA
>NZ_CP022438.1|WP_100111506.1|6987875_6989381_-|alpha/beta-fold-hydrolase
MTAFVLVPGTFTGGWVWQEVAARLRESGAEVHPVTLTGMDDRRHLAGPDTDLETHVDDVVRLIDEVAAPQVVIVGHDYGIHPVLGAADRRPERIARVVHLDAGIPQDGEPAAQMVTDQAVRDRLSGPADSDDDWRVQPPALDGWQRWGSTAGVPGDALALLSDRAAPQPRATLTQPLRLSGAASELPSTGVLCTANGSSIAIVQASVGLGDPRLKALTDPRVTFFELATGHWPMLSAPAELAEVLLRAAAGEGHRLTEAAGEPPPHLRPFLLDPPEQHRERVGRIDLHLPDADGPRPAVVFVHGGPVPAEARPTPRDWPGFAGYAQYVASLGAVGVTLDHRLHSVGDYGRAAEDVSATVDLVRADPRVDGERVALWFFSGGGLLSADWLASSRPWLRCVAATYPVLAPLPSWGLTDTRFRPATAVREAGRLPIVLTRVELELAEIAVTVEEFLAAAEDCEAAVEIVDVPGGHHGFETIDHTEQARDAVTRAVRSVLGHLRS
>NZ_CP022438.1|WP_100110169.1|6986474_6987626_-|serine-hydrolase
MTNLRTVLSKHVDSGSLPGAVALVARGDQVDVQAVGHTDRDGTAPMARDSIFRIASITKPVVAAAVMMLVEDGVIALDDPVDAWLPELAAPMVVRTPASPVDDVVPAVRPITVFDLLTSRAGYGFPSDFSLPAVAPLVSELKQGPPQPRNVPAPDAWMAALSRIPMLHQPGEAWLYNICSDIQGVLIARASGRTLPEFLVDRLFEPLGMTDTAFDVPSAKLDRFTSYYVPGPTGGPELADAPDGQWSTPPAFPSGAGGLVSTVDDYHAFARLLLAEGTAPDGRRLLTPESVRRMTTNHLTPGQRKAGGLFLEGMGWGFGAAVDVEPVDPWSVPGRYGWVGGTGTAAHITPSTGAVTILLTQLQMSGPSFPESMRDFWRYAAEA
>NZ_CP022438.1|WP_100110176.1|7001782_7003006_-|acetyl-CoA-C-acetyltransferase
MPGQPDVVICEPLRTPIGRFGGALAGLRPAALAAHVIAEVVRRTGIAPERVDEVILGHSYPTSDAPAIGRVAALDAGLPVSVTGVQIDRRCGSGLQAVLDAAMQIRAGFSDVVIAGGVEVMSAAPYYTHDGRWGIKGPGLQLHDSLARGRVTAGGVNHPVPGGMIETAENLRREYRISREDQDALALRSQQRAGRAIRAGLFAEEIVPVPVRTRKGETLVSADEHPRPDTTAEKLAALRPVTLGSDPEATVTAGNASGQNDAAAACLVTSAETADRLGLTPLVRLVSFARAGVPAATMGIGPVPATRAALERAGLGLADLDLIEVNEAFAAQVLACTRELGLTEADHERINVNGSGISLGHPVGATGGRILATLAREMRRREARYGLETMCIGGGQGLAAVFESITD
>NZ_CP022438.1|WP_100110177.1|7003113_7004031_-|LysR-family-transcriptional-regulator
MELRHLTSFLAVAEELHFGRAAKRLQMAQPPLSQQIRQLERELGVQLFERNTRSVRLTSAGQSFLEPVRTVLADLDIAVRVAKAAGQGEYGRVTVGFAGASSHDTLPLLTRAVRAAHPGLELVMQGQTYADVALAKVADGSLDLGFVRLPARRPGVETRVIGQEELLCALPQDHPLADQERISVADLAAEPFVTFPANAGSTLRDATFRACEDAGFHPRIVQEAPDSYTILALVAAGVGVTLTLSSCLHIQQTGMVHRPLAGPPTRLQAALAWRTDNPSAALRSVLAVAAAALPTPAGMEAGQHD
>NZ_CP022438.1|WP_100111510.1|7004164_7005082_+|CoA-transferase-subunit-A
MTMKDAIASFVHDGDTVSLEGFTHLIPTAAGHEIIRQGRRNLTVVRMTADIVVDQLLAGGCVTKLVSSFVGNSSAGSLGELRRRIEHADPEPLAFEEYSHYGMICRYLAGAQRLPFHPLRSYAGSDLPSVNPGIRKVTSPYPGPDGQPEQIYVVPPVNPDVTIVHAQRADRSGNTQVWGLTGVQAEAVYAARKAVVVVEEIVEDEVVRSDPNRTVIPSHAVHAVVACPRGAHPSFAQGYYDRDNAFYRAWSHISKDPARLREWMAEWVYGTRDHAEYVAKQGEEFWAGLAVGEAMSLPVNYGRRL
>NZ_CP022438.1|WP_100111511.1|7005159_7005930_+|3-oxoadipate--succinyl-CoA-transferase-subunit-B
MTATTTATSSELLSVVASRELVGKRTVFAGIGLPTLAASLAHLTVAPTLEIVYESGVCGAHPSHLPETIADAVLITGAEAVLSMATLFGSVLQGGHIDVGFLGAAQIDRHGNLNSSVIGDWDRPTVRLPGSGGAMEVMANSSEVFVVMRRHDPRSFMAELDFCTSPGPDRALADGITPRGAGVTRVITDLGILARAGAGEELQLVAVHPGVTVDQVCAATGWDLRTADEVTTVEPPTAAELRLLREDVDPARVYLR
>NZ_CP022438.1|WP_100110179.1|7006035_7006746_+|hypothetical-protein
MRPPDTPSNSPTPGRNPLATGDGNRPVHVPGDTPDAQELRGVLGEAGVVLDRGTGPADDSVVLVPVWGTTVAASVAEAGLPAARTLRVDPLSLPTRRRVLSMTPASDPDAVHDASAVLARPVGTGEPPAVSVVRDTAGSIAQRLLASVVTVAASIAERGIAAPADIDLAVTLGLGYPLGPLAWGEHTGAARMLDLHRALYATTGDPRYRPTRWVTERAQLGLPLTEPGTPPPHTAG
>NZ_CP022438.1|WP_100110180.1|7006746_7008018_-|ROK-family-protein
MNGNQSGSARRGTARPTPWGAKADRETVRRHNLSLVLRAVRDQVEATRAGVAARVGLTRAAVSSLVEQLLDSGFLSESGKTFSGQAGRPGTVLKVARTGVAGIGVEINVDYVSVCVVDLAGTDRVRLVEHLDNRGAAPAEVFGRAARITARALVSATEQELRPVGTQLALPGLVAAGTVLQAPNLGWTAVPAEAPFAEALAALRADEPPLPVRSDNEANLAALAELWFGGLGDIRSFLYLTGEIGVGGALVLDGELLRGANGFAGEIGHVSVSDDGPRCRCGSHGCLEQYAGQSALLRAAGLDEDSGSAGVAELERRAGAGDDAALTALSGAGRALGRALSGAVNLFDPDAVVLGGIYRPLLPWLAASVGAELEIRVVSGLWPAAGARLRASSPAADAARGAAALVVQGVLADPVAYAPGAPH
>NZ_CP022438.1|WP_100110181.1|7008391_7009837_-|FAD-dependent-oxidoreductase
MSSDPLRTRRSHGRRAVVIGGGLAGMLAAGVLGEYVDEVLVIERDVLPDGPRSRKSLPQAHHAHLLWSGGARAIESLLPGTTDRWLAAGARRIALPTGLVSMSSQGWFRRFPEMQFLIACSRDLLDWVVREQVLAGPRVTVLERTELLRLEASAGRVDGVRVRSSAEGERVLRADLVVDASGRGSRAPEWLRALGVGEVREEKVDSGLAYASRIFRSPEGSEEYPVVNVQADAREPRPGCTATIVPIEGRRWLATLSGTRGGQPTNAADEFEDFARSVRHPVVADLISRAEPLTDVVVSRSTVNRRRYYEKIRDWPEGFVALGDSVATYNPVYGHGMSVAAQGVLALRTALAAHGTDSPGLARRVQRAVAGPVGTAWDLATGQDILYPGAIGKDPGAGARVLRTYVDRLMLTATGRPLVAKALFDVMTLSAPTASLARPEIALAVLRGPKLPPLPGPPLSDDELRVAKAPQGEREADPAEA
>NZ_CP022438.1|WP_100110182.1|7009833_7011021_-|hypothetical-protein
MNGPDYYIPAAALGIALAFKIPGMRRNWRDPMLRSVCALLILGASTFFFAAPPTIAEVNRITGVSNFSAPLVYCILSAFSASCLVLLVNWRGGPPEETRRISLRWMAAYSVVVVALVVLFLLGDAPVERLRDLDTYYARTPGIREMIALYLAAHSVAAVGMTVLCWRWSLKVSGWLRGGLVIIVVGSLFNLAYGVSKSSAVAARWAGHDWDYLSTLAAPPLASVGALLSAVGFVLPLAGQRMSDSWHAWAAYRRLGTLWRELRSTAPQGTPSVRISLFSPAELRVTQRESDIHDGMLQLDPYFDRALREDSYAQALAGGADPRQAHAVADAAMVAAALRARAADPEGQIVKSAEAYTTVAAVGPRDLVRMSLALRHSPVVEAARTRAARSESGTL
>NZ_CP022438.1|WP_100110183.1|7011024_7011555_-|toxin-antitoxin-system,-toxin-component
MRRLCSELVGGIGLPAPAEPAELYSALCEGMSKHRGRPVRHRMASFPPGTASGLWLDMADQDLVVIEERTAPDHQLVILGHELWHMKAGHCSHHVEGAAVAARLLCDEADLQATVLKVAARTRFDQVEENEAESFGLLLGSKCRAWLAGSNGRGPVRRDGVAGRIEASLGYRGPQG
>NZ_CP022438.1|WP_100110184.1|7011633_7012281_-|helix-turn-helix-transcriptional-regulator
MTDGFSVPGPTATGPLAASVARVTELADKLGMSHGEVFDVQKLSEACGVPADVVRALLDGRPAGEPDLQARFLQRFDLLRRTRLKPNGRRYTQQEIADGAGMSRQQAGALINGDRRPTMEHCDAIQRFFKVHAGFLTADDADALDSALRRTEQRLLQDYAGDGDPLERLLQDHGVRGIAWRAAQLPSDKHRDKVTEWLDLLLESVKPGPGTPTEP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022438_5	5.1\|3191103\|16\|NZ_CP022438\|CRISPRCasFinder	3191103-3191118	16	NZ_CP022438.1	4957909-4957924	0	1.0
NZ_CP022438_12	12.2\|7001041\|26\|NZ_CP022438\|CRISPRCasFinder	7001041-7001066	26	NZ_CP022438.1	7001087-7001112	2	0.923

1. spacer 5.1|3191103|16|NZ_CP022438|CRISPRCasFinder matches to position: 4957909-4957924, mismatch: 0, identity: 1.0

caagccgggcgaggac	CRISPR spacer
caagccgggcgaggac	Protospacer
****************

2. spacer 12.2|7001041|26|NZ_CP022438|CRISPRCasFinder matches to position: 7001087-7001112, mismatch: 2, identity: 0.923

gcccgtgccgggttccgaccagggcc	CRISPR spacer
gcccgtgccgggttgcgaccaggccc	Protospacer
************** ******** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022438_3	3.1\|108543\|32\|NZ_CP022438\|CRISPRCasFinder	108543-108574	32	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	415047-415078	2	0.938
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	18440-18471	5	0.844
NZ_CP022438_12	12.2\|7001041\|26\|NZ_CP022438\|CRISPRCasFinder	7001041-7001066	26	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	195561-195586	5	0.808
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1847933-1847963	6	0.806
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1848087-1848117	6	0.806
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1847576-1847606	6	0.806
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1847520-1847550	6	0.806
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	172692-172722	6	0.806
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	84588-84618	6	0.806
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	172429-172459	6	0.806
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	13124-13155	6	0.812
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1944839-1944870	6	0.812
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	58076-58107	6	0.812
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	58076-58107	6	0.812
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	12800-12831	6	0.812
NZ_CP022438_3	3.6\|108850\|32\|NZ_CP022438\|CRISPRCasFinder	108850-108881	32	NC_018532	Arthrobacter sp. Rue61a plasmid p232, complete sequence	192505-192536	6	0.812
NZ_CP022438_10	10.2\|5600648\|32\|NZ_CP022438\|CRISPRCasFinder	5600648-5600679	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3510646-3510677	6	0.812
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_LR134452	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence	131807-131837	7	0.774
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP038146	Streptomyces sp. S501 plasmid unnamed, complete sequence	39288-39318	7	0.774
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1337305-1337335	7	0.774
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1740474-1740504	7	0.774
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	758754-758785	7	0.781
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	390176-390207	7	0.781
NZ_CP022438_3	3.2\|108604\|31\|NZ_CP022438\|CRISPRCasFinder	108604-108634	31	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	201912-201942	7	0.774
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	MN807247	Mycobacterium phage Chupacabra, complete genome	30846-30877	7	0.781
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	MF773750	Mycobacterium phage OKCentral2016, complete genome	30553-30584	7	0.781
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	JX307704	Mycobacterium virus Goose, complete genome	30650-30681	7	0.781
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	207077-207108	7	0.781
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NC_021295	Burkholderia insecticola plasmid p2, complete sequence	128575-128606	7	0.781
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	130954-130985	7	0.781
NZ_CP022438_3	3.5\|108789\|32\|NZ_CP022438\|CRISPRCasFinder	108789-108820	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	397393-397424	7	0.781
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_008441	Streptomyces laurentii plasmid pSLS DNA, complete sequence	6210-6240	8	0.742
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_LR134468	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence	27525-27555	8	0.742
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	777418-777448	8	0.742
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_022044	Paracoccus aminophilus JCM 7686 plasmid pAMI6, complete sequence	177336-177366	8	0.742
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	667257-667287	8	0.742
NZ_CP022438_3	3.2\|108604\|31\|NZ_CP022438\|CRISPRCasFinder	108604-108634	31	KF614509	Rhizobium phage vB_RleS_L338C, complete genome	37114-37144	8	0.742
NZ_CP022438_3	3.2\|108604\|31\|NZ_CP022438\|CRISPRCasFinder	108604-108634	31	MT778840	Rhizobium phage P11VFA, complete genome	54243-54273	8	0.742
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MH171096	Streptomyces phage Eddasa, complete genome	9172-9206	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541405	Streptomyces phage Celeste, complete genome	8976-9010	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541406	Streptomyces phage Dattran, complete genome	8975-9009	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541410	Streptomyces phage Ozzie, complete genome	8989-9023	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	KX507344	Streptomyces phage Godpower, complete genome	8993-9027	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MT310862	Streptomyces phage Itza, complete genome	9234-9268	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NC_021304	Streptomyces phage Sujidade, complete genome	9270-9304	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MK433276	Streptomyces phage Asten, complete genome	8968-9002	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	KX507345	Streptomyces phage Brataylor, complete genome	8978-9012	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN096373	Streptomyces phage TuanPN, complete genome	8978-9012	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541403	Streptomyces phage BeardedLady, complete genome	9256-9290	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN586009	Streptomyces phage Phettuccine, complete genome	9009-9043	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MH171097	Streptomyces phage Goby, complete genome	8978-9012	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN096381	Streptomyces phage Rusticus, complete genome	9172-9206	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541404	Streptomyces phage BryanRecycles, complete genome	9172-9206	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN284899	Streptomyces phage Whatever, complete genome	8976-9010	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NC_028892	Streptomyces phage Caliburn, complete genome	8989-9023	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NC_021298	Streptomyces phage Lika, complete genome	8994-9028	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NC_028976	Streptomyces phage Izzy, complete genome	9219-9253	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN096379	Streptomyces phage Yasdnil, complete genome	8974-9008	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN062705	Streptomyces phage Celia, complete genome	9311-9345	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MN234189	Streptomyces phage Urza, complete genome	9246-9280	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541408	Streptomyces phage Jash, complete genome	9172-9206	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MG757163	Streptomyces phage OzzyJ, complete genome	8969-9003	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	KX344445	Streptomyces phage Nanodon, complete genome	9168-9202	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MK433271	Streptomyces phage Indigo, complete genome	9009-9043	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NC_041860	Streptomyces phage Danzina, complete genome	9180-9214	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MF541409	Streptomyces phage Oliynyk, complete genome	9172-9206	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NC_021339	Streptomyces phage Zemlya, complete genome	8986-9020	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MH171095	Streptomyces phage Maneekul, complete genome	8977-9011	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	MH171098	Streptomyces phage Toma, complete genome	8978-9012	8	0.771
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	KT124229	Streptomyces phage Hydra, complete genome	9537-9571	8	0.771
NZ_CP022438_3	3.6\|108850\|32\|NZ_CP022438\|CRISPRCasFinder	108850-108881	32	NZ_CP022264	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence	27799-27830	8	0.75
NZ_CP022438_3	3.8\|108971\|32\|NZ_CP022438\|CRISPRCasFinder	108971-109002	32	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	44287-44318	8	0.75
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	MT114163	Mycobacterium phage Settecandela, complete genome	102500-102530	9	0.71
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	MK937592	Mycobacterium phage Phrappuccino, complete genome	102500-102530	9	0.71
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	272-302	9	0.71
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_014753	Oceanithermus profundus DSM 14977 plasmid pOCEPR01, complete sequence	62408-62438	9	0.71
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_015597	Sinorhizobium meliloti AK83 plasmid pSINME01, complete sequence	221226-221256	9	0.71
NZ_CP022438_2	2.1\|108179\|31\|NZ_CP022438\|CRISPRCasFinder	108179-108209	31	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	527670-527700	9	0.71
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	256742-256773	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	861183-861214	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_KX839208	Klebsiella pneumoniae strain KP1814 plasmid pKP1814-2, complete sequence	116055-116086	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP013323	Klebsiella pneumoniae strain CAV1193 plasmid pCAV1193-258, complete sequence	145753-145784	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP023417	Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence	53039-53070	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP040862	Klebsiella pneumoniae strain Xen39 plasmid unnamed3, complete sequence	9052-9083	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP019840	Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence	41154-41185	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP026186	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence	4567-4598	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP031851	Klebsiella pneumoniae strain 121 plasmid pKP121-2, complete sequence	39253-39284	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP028549	Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence	99218-99249	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	59238-59269	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP011587	Enterobacter asburiae strain CAV1043 plasmid pCAV1043-51, complete sequence	30255-30286	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	16604-16635	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP026397	Klebsiella pneumoniae strain KPNIH48 plasmid pKPN-10f7, complete sequence	202466-202497	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP022824	Klebsiella quasivariicola strain KPN1705 plasmid pKPN1705-1, complete sequence	75553-75584	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP024507	Klebsiella pneumoniae strain KSB2_1B plasmid unnamed1, complete sequence	181384-181415	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP011623	Klebsiella pneumoniae strain CAV1344 plasmid pCAV1344-250, complete sequence	138205-138236	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP033798	Enterobacter roggenkampii strain FDAARGOS_523 plasmid unnamed2, complete sequence	60339-60370	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP041936	Klebsiella pneumoniae strain KP14003 plasmid unnamed2, complete sequence	75585-75616	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	121723-121754	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP014763	Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence	9318-9349	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NC_019390	Klebsiella pneumoniae plasmid pKPN_CZ, complete sequence	74100-74131	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	MN657245	Enterobacteriaceae bacterium strain 23-16 plasmid pEC6332-T6, complete sequence	7708-7739	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	MN657246	Enterobacteriaceae bacterium strain 23-17 plasmid pEC6332-T7, complete sequence	7745-7776	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	LR134219	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 3	67295-67326	9	0.719
NZ_CP022438_2	2.2\|108239\|32\|NZ_CP022438\|CRISPRCasFinder	108239-108270	32	NZ_CP032169	Klebsiella pneumoniae strain AR_0076 plasmid unnamed2, complete sequence	110339-110370	9	0.719
NZ_CP022438_3	3.2\|108604\|31\|NZ_CP022438\|CRISPRCasFinder	108604-108634	31	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	284007-284037	9	0.71
NZ_CP022438_3	3.3\|108664\|35\|NZ_CP022438\|CRISPRCasFinder	108664-108698	35	NZ_CP048420	Sphingomonas insulae strain KCTC 12872 plasmid unnamed2, complete sequence	69443-69477	9	0.743
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	137621-137652	9	0.719
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	137621-137652	9	0.719
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	103425-103456	9	0.719
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	389493-389524	9	0.719
NZ_CP022438_3	3.4\|108728\|32\|NZ_CP022438\|CRISPRCasFinder	108728-108759	32	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	42412-42443	9	0.719
NZ_CP022438_3	3.6\|108850\|32\|NZ_CP022438\|CRISPRCasFinder	108850-108881	32	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	80054-80085	9	0.719
NZ_CP022438_3	3.6\|108850\|32\|NZ_CP022438\|CRISPRCasFinder	108850-108881	32	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	83599-83630	9	0.719
NZ_CP022438_10	10.2\|5600648\|32\|NZ_CP022438\|CRISPRCasFinder	5600648-5600679	32	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	32014-32045	9	0.719
NZ_CP022438_10	10.2\|5600648\|32\|NZ_CP022438\|CRISPRCasFinder	5600648-5600679	32	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	109343-109374	9	0.719
NZ_CP022438_3	3.7\|108911\|31\|NZ_CP022438\|CRISPRCasFinder	108911-108941	31	NC_047802	Pectobacterium phage PP99, complete genome	38973-39003	10	0.677
NZ_CP022438_10	10.2\|5600648\|32\|NZ_CP022438\|CRISPRCasFinder	5600648-5600679	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	298763-298794	10	0.688

1. spacer 3.1|108543|32|NZ_CP022438|CRISPRCasFinder matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 2, identity: 0.938

cgggggatcggctgtcaccgccacacgccgcg	CRISPR spacer
caggggatcggctgccaccgccacacgccgcg	Protospacer
*.************.*****************

2. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 5, identity: 0.844

tccaccg--cgagacgacggccgcagccgcacgc	CRISPR spacer
--caccgtccgagacgacgcccgcggccgcaccc	Protospacer
  *****  ********** ****.******* *

3. spacer 12.2|7001041|26|NZ_CP022438|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

gcccgtgccgggttccgaccagggcc	CRISPR spacer
gcgcgtgccgggttccggccaggctt	Protospacer
** **************.***** ..

4. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

5. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

6. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

7. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

8. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

9. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

10. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.806

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
atcgcctcggaccacggccccatcgccacca	Protospacer
 ***** **************.***.*  **

11. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

---acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
tgaacg---cactgatgccgcgcgcacccggcgcc	Protospacer
   ***   ***** ************* **** *

12. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

---acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
tgaacg---cactgatgccgcgcgcacccggcgcc	Protospacer
   ***   ***** ************* **** *

13. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.812

---acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
tgaacg---cactgatgccgcgcgcacccggcgcc	Protospacer
   ***   ***** ************* **** *

14. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

---acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
tgaacg---cactgatgccgcgcgcacccggcgcc	Protospacer
   ***   ***** ************* **** *

15. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.812

---acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
tgaacg---cactgatgccgcgcgcacccggcgcc	Protospacer
   ***   ***** ************* **** *

16. spacer 3.6|108850|32|NZ_CP022438|CRISPRCasFinder matches to NC_018532 (Arthrobacter sp. Rue61a plasmid p232, complete sequence) position: , mismatch: 6, identity: 0.812

gcccacctgcggtccgtgccgaagtcggagga	CRISPR spacer
gcccacttgcggtccgtgccggagtcgcggac	Protospacer
******.**************.***** .*.

17. spacer 10.2|5600648|32|NZ_CP022438|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.812

---tgcttgcccgcaaggtcgtcccgccgcgggat	CRISPR spacer
acctgctt---cgcaaggtcgtcgcgctgcgggag	Protospacer
   *****   ************ ***.******

18. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_LR134452 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence) position: , mismatch: 7, identity: 0.774

ttcgccgcggaccacggccccgtcgt-ctaca	CRISPR spacer
gtcgccgccgaccgcggccccgtcgcggtgc-	Protospacer
 ******* ****.***********.  *.*

19. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP038146 (Streptomyces sp. S501 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
ctggccgcggaccacggccgcgtcggcggcc	Protospacer
.* **************** ***** * .*

20. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.774

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gccgccgccgaccactgccccgtcggcgcca	Protospacer
 .****** ****** ********* *  **

21. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ttcgccgcggaccacggccccgtcgtctaca-	CRISPR spacer
atcgccgcgcaccaaggccccgtc-tatgcgc	Protospacer
 ******** **** ********* * *.*.

22. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.781

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
tgatccgcgcgacgccggccgcagccgcaccg	Protospacer
*   ***** **** ***************

23. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 7, identity: 0.781

-tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
ggccggcg-aaggcgacggccgccgccgcacgc	Protospacer
  **. ** .**.********** *********

24. spacer 3.2|108604|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 7, identity: 0.774

gcctcag----cctccttggccacgtggtggaaat	CRISPR spacer
----cagatttgctccttggccatgtggaggaaat	Protospacer
    ***     ***********.**** ******

25. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to MN807247 (Mycobacterium phage Chupacabra, complete genome) position: , mismatch: 7, identity: 0.781

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
gtcatcgacgccctcaacaccgtgcaggggtt	Protospacer
*.* *** *************** ****.* .

26. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to MF773750 (Mycobacterium phage OKCentral2016, complete genome) position: , mismatch: 7, identity: 0.781

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
gtcatcgacgccctcaacaccgtgcaggggtt	Protospacer
*.* *** *************** ****.* .

27. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to JX307704 (Mycobacterium virus Goose, complete genome) position: , mismatch: 7, identity: 0.781

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
gtcatcgacgccctcaacaccgtgcaggggtt	Protospacer
*.* *** *************** ****.* .

28. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
tccctcgtcgccttcaaccccgtctacggcac	Protospacer
 ***********.***** *****.* *. **

29. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NC_021295 (Burkholderia insecticola plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
cccggcacgtgctgccccgcgcaccaggctgc	Protospacer
 * ***   ******* ************ **

30. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 7, identity: 0.781

----acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
gatcccggg----tgctgccgcgcgtaccgggcggc	Protospacer
     ****    ************.***.******

31. spacer 3.5|108789|32|NZ_CP022438|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 7, identity: 0.781

----acgggccactgctgccgcgcgcaccaggcggc	CRISPR spacer
gatcccggg----tgctgccgcgcgtaccgggcggc	Protospacer
     ****    ************.***.******

32. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_008441 (Streptomyces laurentii plasmid pSLS DNA, complete sequence) position: , mismatch: 8, identity: 0.742

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
cgagccgcggcccaccgccccgtcgtcgtcg	Protospacer
.  ******* **** ***********  *.

33. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 8, identity: 0.742

ttcgccgcggaccacggccccgtcgtctaca-	CRISPR spacer
gtcggcgcgggccacggccccgtca-atgcgt	Protospacer
 *** *****.*************.  *.*.

34. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gacgccgccgaccacggccacgtcgatgaga	Protospacer
  ****** ********** ***** . * *

35. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_022044 (Paracoccus aminophilus JCM 7686 plasmid pAMI6, complete sequence) position: , mismatch: 8, identity: 0.742

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gacgcggcggaccacggccccggcgggcacg	Protospacer
  *** **************** **  .**.

36. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gacgccgccgaccacggccacgtcgatgaga	Protospacer
  ****** ********** ***** . * *

37. spacer 3.2|108604|31|NZ_CP022438|CRISPRCasFinder matches to KF614509 (Rhizobium phage vB_RleS_L338C, complete genome) position: , mismatch: 8, identity: 0.742

gcctcagcctccttggccacgtggtggaaat	CRISPR spacer
gtggtagcctccttggccacgtgcgggattt	Protospacer
*.  .******************  ***  *

38. spacer 3.2|108604|31|NZ_CP022438|CRISPRCasFinder matches to MT778840 (Rhizobium phage P11VFA, complete genome) position: , mismatch: 8, identity: 0.742

gcctcagcctccttggccacgtggtggaaat	CRISPR spacer
gtggtagcctccttggccacgtgcgggattt	Protospacer
*.  .******************  ***  *

39. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MH171096 (Streptomyces phage Eddasa, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

40. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541405 (Streptomyces phage Celeste, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

41. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541406 (Streptomyces phage Dattran, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

42. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541410 (Streptomyces phage Ozzie, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

43. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to KX507344 (Streptomyces phage Godpower, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

44. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MT310862 (Streptomyces phage Itza, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gccgagacgatcatccgggtgatgttgatctgcat-	Protospacer
.*.*.**************.****** *** **..

45. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NC_021304 (Streptomyces phage Sujidade, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

46. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MK433276 (Streptomyces phage Asten, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

47. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to KX507345 (Streptomyces phage Brataylor, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

48. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN096373 (Streptomyces phage TuanPN, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

49. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541403 (Streptomyces phage BeardedLady, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

50. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN586009 (Streptomyces phage Phettuccine, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

51. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MH171097 (Streptomyces phage Goby, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

52. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN096381 (Streptomyces phage Rusticus, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

53. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541404 (Streptomyces phage BryanRecycles, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

54. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN284899 (Streptomyces phage Whatever, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

55. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NC_028892 (Streptomyces phage Caliburn, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

56. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NC_021298 (Streptomyces phage Lika, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

57. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NC_028976 (Streptomyces phage Izzy, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

58. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN096379 (Streptomyces phage Yasdnil, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

59. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN062705 (Streptomyces phage Celia, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gccgagacgatcatccgggtgatgttgatctgcat-	Protospacer
.*.*.**************.****** *** **..

60. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MN234189 (Streptomyces phage Urza, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gccgagacgatcatccgggtgatgttgatctgcat-	Protospacer
.*.*.**************.****** *** **..

61. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541408 (Streptomyces phage Jash, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

62. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MG757163 (Streptomyces phage OzzyJ, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

63. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to KX344445 (Streptomyces phage Nanodon, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

64. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MK433271 (Streptomyces phage Indigo, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

65. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NC_041860 (Streptomyces phage Danzina, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

66. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MF541409 (Streptomyces phage Oliynyk, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

67. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NC_021339 (Streptomyces phage Zemlya, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

68. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MH171095 (Streptomyces phage Maneekul, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

69. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to MH171098 (Streptomyces phage Toma, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

70. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to KT124229 (Streptomyces phage Hydra, complete genome) position: , mismatch: 8, identity: 0.771

actgggacgatcatccgggcgatgttcatc-gcgcc	CRISPR spacer
gcggcgacgatcatccgggtgatgttgatctgcat-	Protospacer
.* * **************.****** *** **..

71. spacer 3.6|108850|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP022264 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence) position: , mismatch: 8, identity: 0.75

gcccacctgcggtccgtgccgaagtcggagga	CRISPR spacer
ggtcctgtgctgtccgtgccgaagacggaggg	Protospacer
* .* . *** ************* ******.

72. spacer 3.8|108971|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgccgggatcccagtccatggccaacgcgtc	CRISPR spacer
gcgccgggatccgactccatggcagccccttg	Protospacer
************ * ******** . * * *

73. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to MT114163 (Mycobacterium phage Settecandela, complete genome) position: , mismatch: 9, identity: 0.71

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gaacttgcggaccacggccccgtcgacttcg	Protospacer
    ..******************* ** *.

74. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to MK937592 (Mycobacterium phage Phrappuccino, complete genome) position: , mismatch: 9, identity: 0.71

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gaacttgcggaccacggccccgtcgacttcg	Protospacer
    ..******************* ** *.

75. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gcacgcgcggaccacgcccccgccgtctcct	Protospacer
 .   *********** *****.***** *

76. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_014753 (Oceanithermus profundus DSM 14977 plasmid pOCEPR01, complete sequence) position: , mismatch: 9, identity: 0.71

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gaagccgcggacgaaggccccgtcgttcatg	Protospacer
   ********* * ***********..*..

77. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_015597 (Sinorhizobium meliloti AK83 plasmid pSINME01, complete sequence) position: , mismatch: 9, identity: 0.71

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
cgacttggggaccacgggcccgtcgtgtaca	Protospacer
.   ..* ********* ******** ****

78. spacer 2.1|108179|31|NZ_CP022438|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.71

ttcgccgcggaccacggccccgtcgtctaca	CRISPR spacer
gacgccgccgaccacggccacgtcgatgagg	Protospacer
  ****** ********** ***** . * .

79. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
cggatgacgagaggacggccgccgccgcacgg	Protospacer
.  *. .***** ********* ********

80. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
tcgcgcgcgagacgatggccgccgccgccatt	Protospacer
**   **********.****** *****   .

81. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_KX839208 (Klebsiella pneumoniae strain KP1814 plasmid pKP1814-2, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

82. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP013323 (Klebsiella pneumoniae strain CAV1193 plasmid pCAV1193-258, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

83. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP023417 (Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

84. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP040862 (Klebsiella pneumoniae strain Xen39 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

85. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

86. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026186 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

87. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP031851 (Klebsiella pneumoniae strain 121 plasmid pKP121-2, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

88. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP028549 (Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

89. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

90. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP011587 (Enterobacter asburiae strain CAV1043 plasmid pCAV1043-51, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

91. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

92. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026397 (Klebsiella pneumoniae strain KPNIH48 plasmid pKPN-10f7, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

93. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP022824 (Klebsiella quasivariicola strain KPN1705 plasmid pKPN1705-1, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

94. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP024507 (Klebsiella pneumoniae strain KSB2_1B plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

95. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP011623 (Klebsiella pneumoniae strain CAV1344 plasmid pCAV1344-250, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

96. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP033798 (Enterobacter roggenkampii strain FDAARGOS_523 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

97. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP041936 (Klebsiella pneumoniae strain KP14003 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

98. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

99. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP014763 (Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

100. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NC_019390 (Klebsiella pneumoniae plasmid pKPN_CZ, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

101. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to MN657245 (Enterobacteriaceae bacterium strain 23-16 plasmid pEC6332-T6, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

102. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to MN657246 (Enterobacteriaceae bacterium strain 23-17 plasmid pEC6332-T7, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

103. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to LR134219 (Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 3) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

104. spacer 2.2|108239|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP032169 (Klebsiella pneumoniae strain AR_0076 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tccaccgcgagacgacggccgcagccgcacgc	CRISPR spacer
gacggcgcgagacgagggccgctgccgcgaac	Protospacer
  *. ********** ****** *****. .*

105. spacer 3.2|108604|31|NZ_CP022438|CRISPRCasFinder matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

gcctcagcctccttggccacgtggtggaaat	CRISPR spacer
gagtcagcctccttggcctcgtgttgctcga	Protospacer
*  *************** **** **   .

106. spacer 3.3|108664|35|NZ_CP022438|CRISPRCasFinder matches to NZ_CP048420 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

actgggacgatcatccgggcgatgttcatcgcgcc	CRISPR spacer
tatttcgcgatcatcccggcgatgttcgtcgcgct	Protospacer
  *   .********* **********.******.

107. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 9, identity: 0.719

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
atcgacagcgccctcaccgccgtccaggagat	Protospacer
..*  *. ******** *.************.

108. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 9, identity: 0.719

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
atcgacagcgccctcaccgccgtccaggagat	Protospacer
..*  *. ******** *.************.

109. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 9, identity: 0.719

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
atcgacagcgccctcaccgccgtccaggagat	Protospacer
..*  *. ******** *.************.

110. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 9, identity: 0.719

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
tgggccgacgccctcaacaccgtcgaggtgcc	Protospacer
    .** **************** *** * *

111. spacer 3.4|108728|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gccctcgtcgccctcaacaccgtccaggagac	CRISPR spacer
aacctcggtgccctcaacaccgtcctcgtcaa	Protospacer
. ***** .****************  *  *

112. spacer 3.6|108850|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 9, identity: 0.719

gcccacctgcggtccgtgccgaagtcggagga	CRISPR spacer
gcaaggttgcggtcggtgccgtagtcggagtt	Protospacer
**  . .******* ****** ********

113. spacer 3.6|108850|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 9, identity: 0.719

gcccacctgcggtccgtgccgaagtcggagga	CRISPR spacer
gcaaggttgcggtcggtgccgtagtcggagtt	Protospacer
**  . .******* ****** ********

114. spacer 10.2|5600648|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 9, identity: 0.719

tgcttgcccgcaaggtcgtcccgccgcgggat	CRISPR spacer
tgacctggcgcaaggtcgtcttgccgcgggaa	Protospacer
** ..   ************..*********

115. spacer 10.2|5600648|32|NZ_CP022438|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 9, identity: 0.719

tgcttgcccgcaaggtcgtcccgccgcgggat	CRISPR spacer
tgacctggcgcaaggtcgtcttgccgcgggaa	Protospacer
** ..   ************..*********

116. spacer 3.7|108911|31|NZ_CP022438|CRISPRCasFinder matches to NC_047802 (Pectobacterium phage PP99, complete genome) position: , mismatch: 10, identity: 0.677

tgcctcgccttgggacgcgtccacacctgtc	CRISPR spacer
cccctcgctttggtacgcgtccacaagacag	Protospacer
. ******.**** ***********

117. spacer 10.2|5600648|32|NZ_CP022438|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcttgcccgcaaggtcgtcccgccgcgggat	CRISPR spacer
gaagttcccggaagggcgtcccgccgcggatg	Protospacer
 .  * **** **** *************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

207702 : 237026

Acidianus_tailed_spindle_virus(100.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100105449.1\|207702_208362_-\|transposase	IS607 family transposase	A0A125SJ73	Acidianus_tailed_spindle_virus	8.2e-17	33.2
WP_100110885.1\|208806_209526_-\|transposase	transposase	NA	NA	NA	NA
WP_100105450.1\|209555_209924_-	hypothetical protein	NA	NA	NA	NA
WP_100105451.1\|210007_210451_+	hypothetical protein	NA	NA	NA	NA
WP_100105453.1\|212478_217068_+	AAA family ATPase	NA	NA	NA	NA
WP_159026699.1\|217130_218528_+	hypothetical protein	NA	NA	NA	NA
WP_100110886.1\|218937_219540_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_159026700.1\|219648_219813_-	hypothetical protein	NA	NA	NA	NA
WP_100110887.1\|220229_222347_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_100105455.1\|223092_223779_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_100105456.1\|223762_224914_-	PAS domain-containing protein	NA	NA	NA	NA
WP_159026701.1\|225342_226359_+	hypothetical protein	NA	NA	NA	NA
WP_100105458.1\|226618_226837_-	hypothetical protein	NA	NA	NA	NA
WP_100105459.1\|226833_227376_-\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_100105460.1\|228344_228758_+	hypothetical protein	NA	NA	NA	NA
WP_100105461.1\|228797_229283_+\|transposase	transposase	NA	NA	NA	NA
WP_100105462.1\|229169_229826_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_100105463.1\|229951_231355_-\|transposase	transposase	NA	NA	NA	NA
WP_159026702.1\|232315_233947_-	hypothetical protein	NA	NA	NA	NA
WP_159026703.1\|233828_235487_-	hypothetical protein	NA	NA	NA	NA
WP_159026704.1\|235974_236577_-	hypothetical protein	NA	NA	NA	NA
WP_159026705.1\|236654_237026_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

7901337 : 7957610

Lactobacillus_phage(100.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100111251.1\|7901337_7902132_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_100110787.1\|7902869_7903064_+	hypothetical protein	NA	NA	NA	NA
WP_100110788.1\|7905074_7905923_+	universal stress protein	NA	NA	NA	NA
WP_100111597.1\|7905990_7907655_+	cation:proton antiporter	NA	NA	NA	NA
WP_159026948.1\|7907866_7908331_+	CBS domain-containing protein	NA	NA	NA	NA
WP_100110790.1\|7908537_7909191_-	response regulator transcription factor	NA	NA	NA	NA
WP_100111598.1\|7909187_7910144_-	HAMP domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_100110791.1\|7910476_7910746_+	DUF3040 domain-containing protein	NA	NA	NA	NA
WP_100110792.1\|7910791_7912309_+	potassium/proton antiporter	NA	NA	NA	NA
WP_100110793.1\|7912867_7913341_-	hypothetical protein	NA	NA	NA	NA
WP_100110795.1\|7917265_7918732_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_100110796.1\|7918740_7919322_-	carbonic anhydrase	NA	NA	NA	NA
WP_100110797.1\|7919404_7919800_-	hypothetical protein	NA	NA	NA	NA
WP_100110798.1\|7919982_7920423_+	hypothetical protein	NA	NA	NA	NA
WP_159026949.1\|7921569_7921812_-	hypothetical protein	NA	NA	NA	NA
WP_159026950.1\|7921839_7925112_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_100110801.1\|7925235_7925574_-	hypothetical protein	NA	NA	NA	NA
WP_159026951.1\|7926045_7926237_+	hypothetical protein	NA	NA	NA	NA
WP_100110802.1\|7926674_7928399_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_159026952.1\|7928706_7929570_-	hypothetical protein	NA	NA	NA	NA
WP_100110804.1\|7930241_7931441_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_100110805.1\|7931861_7932158_+	hypothetical protein	NA	NA	NA	NA
WP_100110806.1\|7932982_7933675_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_100110807.1\|7934008_7934239_+	hypothetical protein	NA	NA	NA	NA
WP_100110808.1\|7934436_7935375_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_100110809.1\|7935449_7936016_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_100110810.1\|7936835_7937330_+	hypothetical protein	NA	NA	NA	NA
WP_100110811.1\|7937859_7938180_-	hypothetical protein	NA	NA	NA	NA
WP_100110812.1\|7938242_7938479_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_159026953.1\|7938489_7938630_+	hypothetical protein	NA	NA	NA	NA
WP_100110813.1\|7938682_7938871_-	hypothetical protein	NA	NA	NA	NA
WP_159026954.1\|7938892_7939030_-\|transposase	transposase	NA	NA	NA	NA
WP_100110815.1\|7939105_7939513_-	RidA family protein	NA	NA	NA	NA
WP_100110816.1\|7939594_7940224_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_100110817.1\|7940677_7942072_+	amidohydrolase family protein	NA	NA	NA	NA
WP_100110818.1\|7942345_7943185_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_100110819.1\|7943652_7944474_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_100110820.1\|7944470_7945166_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_100110821.1\|7945892_7946807_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_100110822.1\|7946961_7947210_-	hypothetical protein	NA	NA	NA	NA
WP_159026955.1\|7947337_7947601_-	hypothetical protein	NA	NA	NA	NA
WP_100110823.1\|7950113_7950365_+	hypothetical protein	NA	NA	NA	NA
WP_159026956.1\|7950886_7951699_-	hypothetical protein	NA	NA	NA	NA
WP_100111599.1\|7951927_7952185_-	hypothetical protein	NA	NA	NA	NA
WP_159026957.1\|7952364_7953411_+\|transposase	transposase	NA	NA	NA	NA
WP_100110825.1\|7954400_7955060_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	3.4e-07	26.9
WP_100109935.1\|7955195_7956431_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_107490014.1\|7956473_7957610_-\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022438

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection