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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022291 Staphylococcus aureus subsp. aureus strain EDCC5464 chromosome, complete genome 8 crisprs cas3,DEDDh,RT,DinG,csa3,WYL 3 0 10 0

Results visualization

1. NZ_CP022291
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_1 596174-596261 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_2 880185-880269 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_3 1152972-1153063 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_4 1869223-1869365 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_5 1903304-1903393 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_6 2151881-2151983 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_7 2232126-2232250 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022291_8 2605778-2605859 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP022291_5 5.1|1903336|26|NZ_CP022291|CRISPRCasFinder 1903336-1903361 26 NZ_CP022291.1 768264-768289 0 1.0
NZ_CP022291_5 5.1|1903336|26|NZ_CP022291|CRISPRCasFinder 1903336-1903361 26 NZ_CP022291.1 1904796-1904821 0 1.0
NZ_CP022291_5 5.1|1903336|26|NZ_CP022291|CRISPRCasFinder 1903336-1903361 26 NZ_CP022291.1 2258448-2258473 0 1.0
NZ_CP022291_1 1.1|596204|28|NZ_CP022291|CRISPRCasFinder 596204-596231 28 NZ_CP022291.1 1903395-1903422 1 0.964
NZ_CP022291_8 8.1|2605802|34|NZ_CP022291|CRISPRCasFinder 2605802-2605835 34 NZ_CP022291.1 977679-977712 2 0.941

1. spacer 5.1|1903336|26|NZ_CP022291|CRISPRCasFinder matches to position: 768264-768289, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

2. spacer 5.1|1903336|26|NZ_CP022291|CRISPRCasFinder matches to position: 1904796-1904821, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

3. spacer 5.1|1903336|26|NZ_CP022291|CRISPRCasFinder matches to position: 2258448-2258473, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

4. spacer 1.1|596204|28|NZ_CP022291|CRISPRCasFinder matches to position: 1903395-1903422, mismatch: 1, identity: 0.964

ggtgtgggccccaacacagagaatttca	CRISPR spacer
ggtgtgggccccaacatagagaatttca	Protospacer
****************.***********

5. spacer 8.1|2605802|34|NZ_CP022291|CRISPRCasFinder matches to position: 977679-977712, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagaggaattggatttccaat	Protospacer
******************.*********.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 700831 : 708652 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 720625 : 734593 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 979033 : 987506 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1247668 : 1254026 9 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_5 1553202 : 1561532 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1630924 : 1639967 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1762925 : 1775664 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_8 1778825 : 1787829 9 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_9 1794399 : 1833849 45 Staphylococcus_phage(82.76%) transposase,protease NA
DBSCAN-SWA_10 1928810 : 2027252 113 Staphylococcus_phage(84.42%) terminase,head,capsid,protease,integrase,holin,tail,transposase,portal attL 1951016:1951075|attR 2012860:2015059
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage