CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP024829	Escherichia coli strain CREC-544 plasmid pCREC-544_3, complete sequence	0 crisprs	NA	0	1
NZ_CP024827	Escherichia coli strain CREC-544 plasmid pCREC-544_1, complete sequence	0 crisprs	csa3	0	1
NZ_CP024828	Escherichia coli strain CREC-544 plasmid pCREC-544_2, complete sequence	0 crisprs	NA	0	1
NZ_CP024826	Escherichia coli strain CREC-544 chromosome, complete genome	4 crisprs	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	4	9

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024826_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024826_1

1379417-1379529

Orphan

Consensus_repeat	Method
TTTACCCGAATCAGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP024826_1

>merge|NZ_CP024826|1|1379417-1379529|PILER-CR
TTACCCGAATCAGGTAAGAAAAATAAAGTTTACCTGAAAGAGGTAAATTTACCTGAATCAGGTAAAAAAAGTTTACCCAAATCAGGTAAAGACGTTTACCCGAATCAGGTAAA

>NZ_CP024826|1|1|1379417-1379529|PILER-CR
TTACCCGAATCAGGTAAGA	AAAATAAAGTTTACCTGAAAGAGGTAAAT
TTACCTGAATCAGGTAAAA	AAAGTTTACCCAAATCAGGTAAAGACGT
TTACCCGAATCAGGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024826.1\|WP_000995439.1\|1375424_1375721_-\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP024826.1\|WP_061092794.1\|1378439_1378979_+\|regulator	unknown	unknown	gnl\|CDD\|368819
NZ_CP024826.1\|WP_032139864.1\|1381483_1381591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001566186.1\|1379991_1380693_+\|replication-protein-P	unknown	unknown	gnl\|CDD\|369163
NZ_CP024826.1\|WP_061092791.1\|1376534_1376852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001053033.1\|1384934_1385390_+\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP024826.1\|WP_000068668.1\|1383808_1384738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_024228451.1\|1373956_1374637_-\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP024826.1\|WP_061092792.1\|1376983_1377253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001070442.1\|1381059_1381392_+\|SMR-family-multidrug-efflux-protein-EmrE	unknown	unknown	gnl\|CDD\|137367
NZ_CP024826.1\|WP_052953584.1\|1374633_1375419_-\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP024826.1\|WP_001567061.1\|1383286_1383604_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371129
NZ_CP024826.1\|WP_001309322.1\|1384836_1384938_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001067459.1\|1378127_1378358_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP024826.1\|WP_000145912.1\|1380689_1380992_+\|protein-ren	unknown	unknown	unknown
NZ_CP024826.1\|WP_000224919.1\|1385389_1385560_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP024826.1\|WP_064767403.1\|1377333_1378023_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP024826.1\|WP_000709069.1\|1381648_1383175_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP024826.1\|WP_061092790.1\|1375796_1376003_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP024826.1\|WP_045173744.1\|1373801_1373960_-\|DUF1317-family-protein	unknown	unknown	gnl\|CDD\|284449

Protein	Function_ID	Function_description	E-value
NZ_CP024826.1\|WP_000995439.1\|1375424_1375721_-\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	8.40476e-53
NZ_CP024826.1\|WP_061092794.1\|1378439_1378979_+\|regulator	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	1.29366e-37
NZ_CP024826.1\|WP_001566186.1\|1379991_1380693_+\|replication-protein-P	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.39958e-81
NZ_CP024826.1\|WP_052953584.1\|1374633_1375419_-\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	7.63163e-65
NZ_CP024826.1\|WP_001053033.1\|1384934_1385390_+\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	8.87333e-95
NZ_CP024826.1\|WP_024228451.1\|1373956_1374637_-\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	3.21152e-29
NZ_CP024826.1\|WP_001070442.1\|1381059_1381392_+\|SMR-family-multidrug-efflux-protein-EmrE	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	2.58749e-62
NZ_CP024826.1\|WP_001567061.1\|1383286_1383604_+\|hypothetical-protein	gnl\|CDD\|371129	pfam10548, P22_AR_C, P22AR C-terminal domain. This domain was identified by Iyer and colleagues. It is found associated with pfam10547.	1.45869e-10
NZ_CP024826.1\|WP_001067459.1\|1378127_1378358_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	2.82645e-22
NZ_CP024826.1\|WP_000224919.1\|1385389_1385560_+\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	5.23624e-25
NZ_CP024826.1\|WP_064767403.1\|1377333_1378023_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.13104e-28
NZ_CP024826.1\|WP_000709069.1\|1381648_1383175_+\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	5.44151e-26
NZ_CP024826.1\|WP_061092790.1\|1375796_1376003_-\|hypothetical-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	1.47433e-13
NZ_CP024826.1\|WP_045173744.1\|1373801_1373960_-\|DUF1317-family-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	2.69023e-30

>NZ_CP024826.1|WP_061092794.1|1378439_1378979_+|regulator
MQPITYQQTSGFTPTAVINRSQTKQAPGHEKIRDAVRAWSAADNQDVVAALIVNEYRELGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP024826.1|WP_001067459.1|1378127_1378358_+|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGDACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP024826.1|WP_064767403.1|1377333_1378023_-|helix-turn-helix-transcriptional-regulator
MKTTLSERLKEARSARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGIGNMSDSTVQPIQSTLSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP024826.1|WP_061092792.1|1376983_1377253_-|hypothetical-protein
MSDKKLIKKSNNCVDAYADAFGYSSFGEDDDRLGSISFFQHVTEWDADGSNDTESVKYNIATIRMTEDLMLKLADFIRDQHDRAKTNKS
>NZ_CP024826.1|WP_061092791.1|1376534_1376852_-|hypothetical-protein
MLQSSGSGGSGSNNVLESKVAKLESDVSYIRRDVDELKTDVKSIDRNMIAVLERLDSIKESLAKKPSIDAIDKKISDAKLAVLLGVPAIIAAGTGLYKLSMYFFL
>NZ_CP024826.1|WP_061092790.1|1375796_1376003_-|hypothetical-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGVERTYTRDLLVEIFLDGRGNGLNH
>NZ_CP024826.1|WP_000995439.1|1375424_1375721_-|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRHGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHQVDIDSEV
>NZ_CP024826.1|WP_052953584.1|1374633_1375419_-|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAEHQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP024826.1|WP_024228451.1|1373956_1374637_-|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFSNYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP024826.1|WP_045173744.1|1373801_1373960_-|DUF1317-family-protein
MTHPHDNIRVGAITFVYSITKRGWVFPGLSVIRNPLKAQRLAEEINNKRGAV
>NZ_CP024826.1|WP_001566186.1|1379991_1380693_+|replication-protein-P
MKNIAAQMINFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEVSVIAGLPNASELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTSLYQNMRANALTDTELRRKAADELTCMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
>NZ_CP024826.1|WP_000145912.1|1380689_1380992_+|protein-ren
MTGKEAIIHYLGTHKSFCAQDVAAVTGATVTSINQAAAKMARAGILVVDGKVWRTVYYRFATREEREGKVSTNLIFKECRQSAAMKRLLRVYKRTSMGTQ
>NZ_CP024826.1|WP_001070442.1|1381059_1381392_+|SMR-family-multidrug-efflux-protein-EmrE
MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSTPH
>NZ_CP024826.1|WP_032139864.1|1381483_1381591_+|hypothetical-protein
MYSFVLSRLWRKKIAIRLLLYIQDNVTLIVFLNKN
>NZ_CP024826.1|WP_000709069.1|1381648_1383175_+|recombinase-family-protein
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNDPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIAALSVAPEVTAIAEKIRVLDKELRRASVSLKTLKSKAVSSLGDFHAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKTISAQQAISTLKYMVDGEVYF
>NZ_CP024826.1|WP_001567061.1|1383286_1383604_+|hypothetical-protein
MDAGVLVLAVQQSPITKQFTDNELCTLAWLWRAGNVMLIAYQNVTHLLQDAEHGEAGHFTSIEQEYPQILNRARAILVRETAHVKLQPWQDDKWSRVLPYLRQIC
>NZ_CP024826.1|WP_000068668.1|1383808_1384738_+|hypothetical-protein
MAQQRTTSLRSIPLDLDVKQEAVINGIEMGVLDNGIPYLTQNGLANVCGVQRLRIKEITDEWAQSVENGIFKKGRMTFIGTYLLNEGFTDEKLYIPIIRNGVEYHAYPDVVCMAILEYYAFEAKQAESETAIRSYRELAKKGLKTFIYEALKYQPEDPWRHYHDRVSLLKDKGTIPDGYFIIFNEIAGMMVDLINAGLAINQHTVPDGSVGSCWARHWKAKGLATEFGERVDCEHYYPEDFLQASSNPQIINAYPDSALSEFRRWFKHEYLTTKFPPYILKKSNVLPGGTEDANRLIEAFKKSELENKP
>NZ_CP024826.1|WP_001309322.1|1384836_1384938_+|hypothetical-protein
MRTYNPNSLLPSQMQRCTCDFLHPAFDLCGGEA
>NZ_CP024826.1|WP_001053033.1|1384934_1385390_+|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFTAIGRQIQPYLEEGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLINRGKTFATPAWVKDALKHTYLGYETKDLVDVVTGDITTIQSLRHTSDLDTGEMYVFLCKVEAWAVNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP024826.1|WP_000224919.1|1385389_1385560_+|NinE-family-protein
MATPLIRVMNGHIYRVSNRRKRKPEPKPSEIPTLLGYTASLVDKKWLRLAARRNHG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024826_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024826_2

2365043-2365166

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024826_2

>merge|NZ_CP024826|2|2365043-2365166|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP024826|2|1|2365043-2365166|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024826.1\|WP_061092687.1\|2357777_2359880_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP024826.1\|WP_001295403.1\|2354496_2355909_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP024826.1\|WP_000493947.1\|2368365_2369007_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP024826.1\|WP_000102278.1\|2374062_2374152_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP024826.1\|WP_000534305.1\|2365480_2366737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP024826.1\|WP_000504334.1\|2359883_2360531_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP024826.1\|WP_000528342.1\|2356465_2356675_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP024826.1\|WP_061092688.1\|2362866_2364477_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP024826.1\|WP_000587589.1\|2362048_2362861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP024826.1\|WP_000007283.1\|2375632_2376214_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP024826.1\|WP_001361451.1\|2360594_2361263_+\|ferredoxin	unknown	unknown	gnl\|CDD\|274451
NZ_CP024826.1\|WP_000269501.1\|2371809_2372742_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP024826.1\|WP_000701040.1\|2374317_2375487_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP024826.1\|WP_000098896.1\|2369046_2370195_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP024826.1\|WP_001070230.1\|2357130_2357757_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP024826.1\|WP_001070010.1\|2361259_2362045_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP024826.1\|WP_000212678.1\|2364602_2364908_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP024826.1\|WP_000190985.1\|2372738_2373764_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP024826.1\|WP_001182363.1\|2370485_2371697_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP024826.1\|WP_001174942.1\|2366777_2368151_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981

Protein	Function_ID	Function_description	E-value
NZ_CP024826.1\|WP_061092687.1\|2357777_2359880_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP024826.1\|WP_001295403.1\|2354496_2355909_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP024826.1\|WP_000493947.1\|2368365_2369007_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP024826.1\|WP_000534305.1\|2365480_2366737_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP024826.1\|WP_000504334.1\|2359883_2360531_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.15057e-122
NZ_CP024826.1\|WP_000528342.1\|2356465_2356675_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP024826.1\|WP_061092688.1\|2362866_2364477_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP024826.1\|WP_000587589.1\|2362048_2362861_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	6.83407e-174
NZ_CP024826.1\|WP_000007283.1\|2375632_2376214_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP024826.1\|WP_001361451.1\|2360594_2361263_+\|ferredoxin	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.27457e-75
NZ_CP024826.1\|WP_000269501.1\|2371809_2372742_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP024826.1\|WP_000701040.1\|2374317_2375487_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP024826.1\|WP_000098896.1\|2369046_2370195_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP024826.1\|WP_001070230.1\|2357130_2357757_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP024826.1\|WP_001070010.1\|2361259_2362045_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.00171e-162
NZ_CP024826.1\|WP_000212678.1\|2364602_2364908_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP024826.1\|WP_000190985.1\|2372738_2373764_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP024826.1\|WP_001182363.1\|2370485_2371697_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP024826.1\|WP_001174942.1\|2366777_2368151_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0

>NZ_CP024826.1|WP_000212678.1|2364602_2364908_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP024826.1|WP_061092688.1|2362866_2364477_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMIATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQCIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDQKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFDQM
>NZ_CP024826.1|WP_000587589.1|2362048_2362861_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATHPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP024826.1|WP_001070010.1|2361259_2362045_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP024826.1|WP_001361451.1|2360594_2361263_+|ferredoxin
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP024826.1|WP_000504334.1|2359883_2360531_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAGFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP024826.1|WP_061092687.1|2357777_2359880_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAIEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP024826.1|WP_001070230.1|2357130_2357757_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP024826.1|WP_000528342.1|2356465_2356675_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP024826.1|WP_001295403.1|2354496_2355909_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP024826.1|WP_000534305.1|2365480_2366737_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYSNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSETIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP024826.1|WP_001174942.1|2366777_2368151_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP024826.1|WP_000493947.1|2368365_2369007_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP024826.1|WP_000098896.1|2369046_2370195_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP024826.1|WP_001182363.1|2370485_2371697_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP024826.1|WP_000269501.1|2371809_2372742_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP024826.1|WP_000190985.1|2372738_2373764_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP024826.1|WP_000102278.1|2374062_2374152_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP024826.1|WP_000701040.1|2374317_2375487_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP024826.1|WP_000007283.1|2375632_2376214_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024826_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024826_3

2976793-2976884

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024826_3

>merge|NZ_CP024826|3|2976793-2976884|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP024826|3|2|2976793-2976884|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024826.1\|WP_001126780.1\|2973030_2973417_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP024826.1\|WP_001307100.1\|2972326_2973019_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP024826.1\|WP_001001170.1\|2974234_2974825_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP024826.1\|WP_001240620.1\|2975350_2976679_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP024826.1\|WP_001120126.1\|2987060_2987753_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP024826.1\|WP_000979516.1\|2966043_2966253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001297176.1\|2971235_2972327_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP024826.1\|WP_001151437.1\|2977307_2977904_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP024826.1\|WP_000209909.1\|2982616_2983216_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP024826.1\|WP_000535338.1\|2979723_2980980_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP024826.1\|WP_001143120.1\|2977924_2978152_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP024826.1\|WP_000024560.1\|2982159_2982465_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP024826.1\|WP_001028079.1\|2974835_2975330_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP024826.1\|WP_000420622.1\|2981239_2982160_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP024826.1\|WP_001361402.1\|2973424_2974225_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP024826.1\|WP_001361399.1\|2966307_2970270_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP024826.1\|WP_001044284.1\|2978189_2979431_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP024826.1\|WP_001063150.1\|2983212_2985759_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP024826.1\|WP_000191701.1\|2970309_2970948_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP024826.1\|WP_001230244.1\|2985758_2986931_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992

Protein	Function_ID	Function_description	E-value
NZ_CP024826.1\|WP_001126780.1\|2973030_2973417_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP024826.1\|WP_001307100.1\|2972326_2973019_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.45431e-169
NZ_CP024826.1\|WP_001001170.1\|2974234_2974825_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.91729e-130
NZ_CP024826.1\|WP_001240620.1\|2975350_2976679_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP024826.1\|WP_001120126.1\|2987060_2987753_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	4.708e-137
NZ_CP024826.1\|WP_001151437.1\|2977307_2977904_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP024826.1\|WP_001297176.1\|2971235_2972327_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP024826.1\|WP_001361402.1\|2973424_2974225_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	5.36737e-141
NZ_CP024826.1\|WP_000209909.1\|2982616_2983216_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.89272e-84
NZ_CP024826.1\|WP_000535338.1\|2979723_2980980_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP024826.1\|WP_001143120.1\|2977924_2978152_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP024826.1\|WP_000024560.1\|2982159_2982465_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP024826.1\|WP_001028079.1\|2974835_2975330_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.07082e-105
NZ_CP024826.1\|WP_000420622.1\|2981239_2982160_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP024826.1\|WP_001063150.1\|2983212_2985759_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP024826.1\|WP_001361399.1\|2966307_2970270_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP024826.1\|WP_001044284.1\|2978189_2979431_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP024826.1\|WP_000191701.1\|2970309_2970948_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP024826.1\|WP_001230244.1\|2985758_2986931_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0

>NZ_CP024826.1|WP_001240620.1|2975350_2976679_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPGFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRIDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVIHQEP
>NZ_CP024826.1|WP_001028079.1|2974835_2975330_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCIGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP024826.1|WP_001001170.1|2974234_2974825_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHLDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP024826.1|WP_001361402.1|2973424_2974225_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP024826.1|WP_001126780.1|2973030_2973417_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP024826.1|WP_001307100.1|2972326_2973019_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP024826.1|WP_001297176.1|2971235_2972327_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP024826.1|WP_000191701.1|2970309_2970948_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP024826.1|WP_001361399.1|2966307_2970270_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVELALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDERVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDGEAKTNIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPALIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP024826.1|WP_000979516.1|2966043_2966253_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP024826.1|WP_001151437.1|2977307_2977904_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP024826.1|WP_001143120.1|2977924_2978152_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP024826.1|WP_001044284.1|2978189_2979431_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGMVLLSSNVQAQTTPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVVAMEKELGKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKTNRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDTNGFCPMDKFDSVLNEAVK
>NZ_CP024826.1|WP_000535338.1|2979723_2980980_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWHNIKKEHEKNQTYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECESLEKEFEEMQNDNDLSLFMRTLRTNGTEIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYGFMEYIESINACDDVFSEYCLEDENISVHPEQINTPGISDLDTGIDLSGISFIQSEINKTYELKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKPTIEALVDAAFCDLREDVKTLFGVDLQSDNKIQGVGSHMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFKDNKKLLALDTDASDRIKAVKNFLAVLSDSICSSFIVTSNVASISLGNESFSTDEDLECGYLMNTSNHYDVYLPPELFAQAYKLNNKERNAQLDYLTRYAI
>NZ_CP024826.1|WP_000420622.1|2981239_2982160_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFEPRKDWGKA
>NZ_CP024826.1|WP_000024560.1|2982159_2982465_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP024826.1|WP_000209909.1|2982616_2983216_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNKLETKIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGSVPARRIDSLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP024826.1|WP_001063150.1|2983212_2985759_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSNTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLMKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYQGYSSTIPIARFVDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP024826.1|WP_001230244.1|2985758_2986931_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP024826.1|WP_001120126.1|2987060_2987753_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPLTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP024826_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024826_4

3621164-3621271

Orphan

Consensus_repeat	Method
GCAATCTGCGCTTGCAGGCTGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024826_4

>merge|NZ_CP024826|4|3621164-3621271|CRISPRCasFinder
GCAATCTGCGCTTGCAGGCTGTCGTTCTGCTCCTGCAGTTTGAGCAATGCATCTTTCAGATCGGCAATCAGCTTATCTTTGTCGGCAATCTGCGCTTGCAGGCCGTCG

>NZ_CP024826|4|3|3621164-3621271|CRISPRCasFinder
GCAATCTGCGCTTGCAGGCTGTCG	TTCTGCTCCTGCAGTTTGAGCAATGCATCTTTCAGATCGGCAATCAGCTTATCTTTGTCG
GCAATCTGCGCTTGCAGGCCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024826.1\|WP_000113283.1\|3629096_3629282_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001050348.1\|3628503_3628959_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_021529140.1\|3620172_3620727_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_050187977.1\|3627929_3628481_-\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|377071
NZ_CP024826.1\|WP_000113486.1\|3624838_3626305_-\|DUF1073-domain-containing-protein	unknown	unknown	gnl\|CDD\|368870
NZ_CP024826.1\|WP_021529139.1\|3619796_3620186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_100183589.1\|3620723_3621131_-\|DUF4054-domain-containing-protein	unknown	unknown	gnl\|CDD\|372538
NZ_CP024826.1\|WP_050187976.1\|3626304_3627927_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_000155114.1\|3614147_3614450_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_050188016.1\|3622458_3622962_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_100183588.1\|3618109_3619255_-\|DUF3383-domain-containing-protein	unknown	unknown	gnl\|CDD\|371768
NZ_CP024826.1\|WP_000109249.1\|3617658_3618099_-\|DUF3277-family-protein	unknown	unknown	gnl\|CDD\|371667
NZ_CP024826.1\|WP_157787427.1\|3624213_3624948_-\|phage-head-morphogenesis-protein	unknown	unknown	gnl\|CDD\|225244
NZ_CP024826.1\|WP_016233441.1\|3614449_3615037_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_000393954.1\|3617202_3617655_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_100183591.1\|3622966_3624199_-\|DUF2213-domain-containing-protein	unknown	unknown	gnl\|CDD\|370768
NZ_CP024826.1\|WP_100183587.1\|3615036_3617025_-\|lytic-transglycosylase	unknown	unknown	gnl\|CDD\|222880
NZ_CP024826.1\|WP_000503647.1\|3619258_3619822_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_001408436.1\|3629425_3629818_-\|DUF2570-domain-containing-protein	unknown	unknown	unknown
NZ_CP024826.1\|WP_050188015.1\|3621505_3622447_-\|DUF2184-domain-containing-protein	unknown	unknown	gnl\|CDD\|370759

Protein	Function_ID	Function_description	E-value
NZ_CP024826.1\|WP_100183588.1\|3618109_3619255_-\|DUF3383-domain-containing-protein	gnl\|CDD\|371768	pfam11863, DUF3383, Protein of unknown function (DUF3383). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 356 to 501 amino acids in length.	1.8602e-86
NZ_CP024826.1\|WP_000109249.1\|3617658_3618099_-\|DUF3277-family-protein	gnl\|CDD\|371667	pfam11681, DUF3277, Protein of unknown function (DUF3277). This family of proteins represents a putative bacteriophage protein. No function is currently known.	8.62676e-78
NZ_CP024826.1\|WP_157787427.1\|3624213_3624948_-\|phage-head-morphogenesis-protein	gnl\|CDD\|225244	COG2369, COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 [Function unknown].	2.50506e-16
NZ_CP024826.1\|WP_000113486.1\|3624838_3626305_-\|DUF1073-domain-containing-protein	gnl\|CDD\|368870	pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.	6.64512e-137
NZ_CP024826.1\|WP_050187977.1\|3627929_3628481_-\|terminase-small-subunit	gnl\|CDD\|377071	pfam03592, Terminase_2, Terminase small subunit. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site.	7.32355e-43
NZ_CP024826.1\|WP_100183591.1\|3622966_3624199_-\|DUF2213-domain-containing-protein	gnl\|CDD\|370768	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213). Members of this family of bacterial proteins comprise various hypothetical and phage-related proteins. The exact function of these proteins has not, as yet, been determined.	2.93637e-59
NZ_CP024826.1\|WP_100183587.1\|3615036_3617025_-\|lytic-transglycosylase	gnl\|CDD\|222880	PHA02564, V, virion protein; Provisional.	3.26377e-27
NZ_CP024826.1\|WP_100183589.1\|3620723_3621131_-\|DUF4054-domain-containing-protein	gnl\|CDD\|372538	pfam13262, DUF4054, Protein of unknown function (DUF4054). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 120 and 152 amino acids in length.	5.31516e-33
NZ_CP024826.1\|WP_050188015.1\|3621505_3622447_-\|DUF2184-domain-containing-protein	gnl\|CDD\|370759	pfam09950, DUF2184, Uncharacterized protein conserved in bacteria (DUF2184). This domain, found in various hypothetical bacterial proteins, has no known function.	3.74968e-102

>NZ_CP024826.1|WP_100183589.1|3620723_3621131_-|DUF4054-domain-containing-protein
MPKNQSLPTVSDFRRDFPQFADPAKYPEAQIQFRLNLADALLSENVTGKELFPYFVELFVAHYMTLWAADSRAMLVGGPGGSTNGVQSSKSVDKVSVSYDTSATLNPDAGFWNNTRYGAEFYQLITVFGAGGRQL
>NZ_CP024826.1|WP_021529140.1|3620172_3620727_-|hypothetical-protein
MSFKSGVTTRVDNAKAILDALRSLTKKDVLVGIPSEDSGRDDVPFGNAGIGYLNEYGSPEQNIPPRPHLVPGVKSAEELTVPQLKTAAQAALDGNAAGAESALNRAGTLAVNGVRRYMTITGFTPLADSTVEARARRGRKGATLELARRAAGESPGTELAKPLIDTGQYRRAITHVVRDKNADS
>NZ_CP024826.1|WP_021529139.1|3619796_3620186_-|hypothetical-protein
MPTLDVTDVLFDPDFCDFNLWVTRRVQTVDEDGIGSDSEVKKQFAGVVTVDRSLENRRMQAGQVISGAILIVTTERLTQGQTGRDADIVTYQGRDYRVTFVDPYTAYGAGFVQAHCELLPFDGGISVEQ
>NZ_CP024826.1|WP_000503647.1|3619258_3619822_-|hypothetical-protein
MGEFRLSNNTSTERGWLIPTSGDPDYDEALDRLLSQWMRNVSGLSAGMVRPRWQKEQPPLLPAETNWCAFGVIGWSGDDSPAFTRQTDDGSQLWRHETIECMASFYGPAGMVYASRFRDGISVPQNNAALNALGLSLGDYTGLTPFPELINQQWVRRYDMTVRLRRKVVREYGIKSLVEAPVIFFGD
>NZ_CP024826.1|WP_100183588.1|3618109_3619255_-|DUF3383-domain-containing-protein
MAQGLPVSNVVNVDVIMSPRAASGRNFGALLILGPSTIIPVSERIRRYSAAEDIGKDFGVESPEYKAAQVFFSQSPKPQEVFVGRWVKTKGDSEQATPETLEQAVNAMLDYTSWYGLGIADDEDIPDADWLKVAAAIESSSVSRILAITTSDEKCLQTASRDDLASKLKTAGYSRSFIQYSSGNKYAALSAFGRAFTVNFNGSNTAITLKFKQEPGVGYETLTVSQASALDAKNCNVFVYYQNDTAILQQGVMANGDFFDERHGLDWLQNYVQTSLYNLLYTSTTKVPQTEAGITRLLSNVEKSLDQAVQNGLIAPGVWNGGDLGQLSSGDTLPKGYYVYAQPLDEQAQSEREARKAPVIQAAIKLAGAVHYADVQINVVR
>NZ_CP024826.1|WP_000109249.1|3617658_3618099_-|DUF3277-family-protein
MSTYSFMDVTATLTGPTGSIDLGYGSASSEEGIVVAMGGPKNTMTIGADGEVMHSLHADKSGTITVNLLKTSPTNKKLSLAYNAQSQSSATWGNNVIVIRNKVSGDIITARSVAFQKQPDNANAKTGNTMPWVFDCGKIDQVLGEF
>NZ_CP024826.1|WP_000393954.1|3617202_3617655_-|hypothetical-protein
MEFEIKGVKYRTAKLSVFDQLKVTRKLLPVLAGMMSDFGSIRSRLPADGKIDTVKFEQLKPVFETMLPRIAEELSSLTEDDTDAIIHPCLAVVSRRHMDGWVPVFTQGELMFDDIDLLVMLQLVARVVADSLGNFLPTPLTSTTQSLQQG
>NZ_CP024826.1|WP_100183587.1|3615036_3617025_-|lytic-transglycosylase
MNAETIKDFLVSLGFSVDDAGAKKFGSVLAGTTANVIKMGLAVEGAALSVVAFTAKIASGLDNLYWASQRTGATVQGIQSIGYAVSQVGGSVDAARSSLESLSRFIRNNPGAEGFLNRLGVQTRDASGNMRDMAAIFTGVGQKLSSMPYYRANQYAQMLGIDENTLMAMRRGVGGFSGQYSAMAKAIGFNADEAARSSNKFMTSLREFGAMAGMARDKIGSNLAGGLAGSLDTLRRHILDNFPRIEQTLTKAIKGILALGDIIGRLFFRLIEGTSGLITWWQSLDKQTRELISLFGALTIALRILNSTFWMSPIGLITALAAGIALLWEDYQTWKEGGDSLIDWGKWKPEVDAALKMVRDLKTTVNDLVKALAKLLNIDPKSWSLKWDFSNFIDQMGEFSKMLNMIADLLNAIKDGRWADAVSIGKQILNQGSENPSAMPMVTDSANSTADWIKEHWGFDPRSVGRTVRGWFGDDEPEQYAQATKRGERNNNPGNLNFAGQAGASLERPGGRFARFETAFDGLRALARQLMLYAGRGINSVEKIISTWAPASDNNNTTAYIRAVSQRLGVDPRAALNMSDPQTMSALMSSIIQHENGRNIYSRELINKAAVAGISGKVTEVNQQNTYHIYGGGDPHAVGNEVARRQQSANAQVMRSNQVRVG
>NZ_CP024826.1|WP_016233441.1|3614449_3615037_-|hypothetical-protein
MDILSTLFHQQSRKIGMIVPSVVISEKHTDMLEITEHPVEVGAAVADHAYKKPSEVVMEVGFAGGGALLDFASNLTATSLLGLSPQQTYQELLDLQESRIPFDVVTGKRLYSNMLIRALEVTTDKTTENVLSAVLTLREVLISRTQQITVADKTNMKEGASTSAVQNSGNKTTKPPDTSLLKSITGNVVSLLGGG
>NZ_CP024826.1|WP_000155114.1|3614147_3614450_-|hypothetical-protein
MTIQEIPLTADNQQFSIVLGGVTWRISIIWRDLYWIMDLQNDRGEPVISGIPLVTGADLLAQYACMGLGFKLLVVCDDNTQDYPTKTDLGGRSHLLVSTE
>NZ_CP024826.1|WP_050188015.1|3621505_3622447_-|DUF2184-domain-containing-protein
MITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWTRDIQLREDVSIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDISKSGNPLNLWGMELGWTVIELQAAQQAGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKKWATSTPDEIRASINQVLSDAWAASGYSVVPCDLLIPPEQFALLSSIIVSSAGNQSLLTYLQTNTISYHQNGVPLNIRAVKWLKGRGVGGKDRMVAYTNDKKYVRYPLVPLQSVPVQYRGLYQIVTYYGKLGAVEPVYKETLSYVDGI
>NZ_CP024826.1|WP_050188016.1|3622458_3622962_-|hypothetical-protein
MTAYLYRMPVGIAGAISRPQDLTVEPVILKSANAFAAYGLAGKYDADGFFVPLADGDTSDKVKGIYVRPYPTTSQPDMVRQVGSGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDPVYVVVSTDESIKVPLGGFCSSSVEGKTVVLANAEFTGAGDANGNAEISWKI
>NZ_CP024826.1|WP_100183591.1|3622966_3624199_-|DUF2213-domain-containing-protein
MKYFFNTRLGETRYQLADGSLLCKDVPIGRTGKQLYGADDLPKLKPDKFGEIVVTRSPEQVFHPATLASFEGVSITILHPEDENGNVRLVNPENWKELAVGHLQNVRRGTGVQSDLMLADLIVKDENAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKSWWTRMRTAIKTGDADTMNELLDSAPAAVTGDEGDLPSGVNLNINLSPQQPLPDKKPEMGGEPTGDGEDDIKTLLKALLAKLEGTATGDNDDKPDGKDNKDPTGDGEDDEEETTITGDAAYRAEVIVPGIDLSRKVKPTAFKRDVLSAADKTLVRQVVGDADIRKLPKQSVDMAFNAVSEIAKGRNTRSTTGDAQRPNMGMTSIASLNKQNADFWSNRKG
>NZ_CP024826.1|WP_157787427.1|3624213_3624948_-|phage-head-morphogenesis-protein
MTNRRNRQAEIRYRTSLRRIARAVGDIVNGHYDGSNDSITEIIEALERYSEIITPWATKVAENFTADIVRKNDEQWRKHSKTISRELRNLVNSAPPGQVMKSIVAEQVKYIKSLPLEAANRVYDIQNRATEAVVTGGRAEHFAKEIAASGDIAKSRADLIARTELGRATGALDQARALSIGSNGYIWRTAEDGDVRHSHQEMEGKFVEWGKPPTLDGMTGHAGELPNCRCYKEIVFPTSQSYPA
>NZ_CP024826.1|WP_000113486.1|3624838_3626305_-|DUF1073-domain-containing-protein
MARNKQALRRTAQATADGYENFIARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMIDPVLTRRIKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVALNTTNAISTALGDGLMTLKAAMTDLRENSDVTGIGASITDEDIENAEDEAPPGIGEPDDEPQEPSGGNPLSNQPTQDSAGGRGHRKWSLRWFK
>NZ_CP024826.1|WP_050187976.1|3626304_3627927_-|hypothetical-protein
MPLPFHFDFKHPDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIPFLLFPKQEEWIHWIMERRERLENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYVDSTGDPKALFWKARKFVETLPIEFRGSWDEKKHAPYMRVEFPDTGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCRIDLSSVNGMANPFAQKRHGGKIPVFTFHWRDDPRKDEEWYRRECEKIDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRYAARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIELSQPTYSINGVGKIVIDKQPDGTRSPNLADSVMINYAPMNSALNIWELLGRQA
>NZ_CP024826.1|WP_050187977.1|3627929_3628481_-|terminase-small-subunit
MALTDKQEMFCREYLIDLNATQAAIRAGYSAKTANRTASENLSKPDIKLRIAELKAQRNDLVGINAEYVLNRLIEIDQMDVLDILLQNGELKPIKDWPKVWRTTLSGMDVVEMVSADSAALLKKIKWPDKVKNLELLGRHISVQAFKDNVKNEVTGADGGPVRTEITNLTPEQAAEAYKKMMG
>NZ_CP024826.1|WP_001050348.1|3628503_3628959_+|hypothetical-protein
MNLLDFCVEKYESGERSFRNGVEPNKDKVAEMLNFVFTTLKNGIQDDVSNYPSIKALLNLELTPNGGFNMNYLPDLIALVFDVVTDRNRNPELWFQKIGGISDEISFTISILLYGPIGHVTHSGKGAAYGKNYESVRSNLIDDLDANIFHG
>NZ_CP024826.1|WP_000113283.1|3629096_3629282_-|hypothetical-protein
MARLNVEVIPPDSETMNGIFAEIERKYAHQPMTPKVIDEMQREAARLVRRATNTKVTFVRD
>NZ_CP024826.1|WP_001408436.1|3629425_3629818_-|DUF2570-domain-containing-protein
MKLRYKLVIVAFFVTVIGSFIWSAGHYYSKYQHEKERADEAVRNAESATAITSNVLQSLQIINTVIEANQHAKQQIALESQRTQEDIKVAVADDDCAVRIVPSGAVKRLHEYANGIRVGAGRSVTSQSDG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024826_1	1.1\|1379436\|29\|NZ_CP024826\|PILER-CR	1379436-1379464	29	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37600-37628	0	1.0
NZ_CP024826_1	1.1\|1379436\|29\|NZ_CP024826\|PILER-CR	1379436-1379464	29	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37883-37911	0	1.0
NZ_CP024826_3	3.1\|2976819\|40\|NZ_CP024826\|CRISPRCasFinder	2976819-2976858	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP024826_1	1.1\|1379436\|29\|NZ_CP024826\|PILER-CR	1379436-1379464	29	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44520-44548	1	0.966
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37648-37675	1	0.964
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37931-37958	1	0.964
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44568-44595	2	0.929
NZ_CP024826_2	2.1\|2365086\|38\|NZ_CP024826\|CRISPRCasFinder	2365086-2365123	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	MK448234	Klebsiella phage ST11-VIM1phi8.2, complete genome	31514-31541	4	0.857
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	KY271400	Klebsiella phage 6 LV-2017, complete genome	9381-9408	4	0.857
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	MT661596	Proteus phage 10, complete genome	116927-116954	4	0.857
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37671-37698	6	0.786
NZ_CP024826_1	1.2\|1379484\|28\|NZ_CP024826\|PILER-CR	1379484-1379511	28	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37954-37981	6	0.786
NZ_CP024826_1	1.1\|1379436\|29\|NZ_CP024826\|PILER-CR	1379436-1379464	29	NZ_CP019641	Planococcus sp. Y42 plasmid unnamed1, complete sequence	315913-315941	7	0.759
NZ_CP024826_1	1.1\|1379436\|29\|NZ_CP024826\|PILER-CR	1379436-1379464	29	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35657-35685	7	0.759

1. spacer 1.1|1379436|29|NZ_CP024826|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

aaaaataaagtttacctgaaagaggtaaa	CRISPR spacer
aaaaataaagtttacctgaaagaggtaaa	Protospacer
*****************************

2. spacer 1.1|1379436|29|NZ_CP024826|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

aaaaataaagtttacctgaaagaggtaaa	CRISPR spacer
aaaaataaagtttacctgaaagaggtaaa	Protospacer
*****************************

3. spacer 3.1|2976819|40|NZ_CP024826|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

4. spacer 1.1|1379436|29|NZ_CP024826|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.966

aaaaataaagtttacctgaaagaggtaaa	CRISPR spacer
aaaaataaagtttaccttaaagaggtaaa	Protospacer
***************** ***********

5. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 1, identity: 0.964

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aaaagtttacccaaatcaggtaaaggcg	Protospacer
*************************.**

6. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 1, identity: 0.964

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aaaagtttacccaaatcaggtaaaggcg	Protospacer
*************************.**

7. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 2, identity: 0.929

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aaaagtttacccaaatcaggtaaaggca	Protospacer
*************************.*.

8. spacer 2.1|2365086|38|NZ_CP024826|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to MK448234 (Klebsiella phage ST11-VIM1phi8.2, complete genome) position: , mismatch: 4, identity: 0.857

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aaaagtttacccgaatcaggtaacgcct	Protospacer
************.********** * *

10. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 4, identity: 0.857

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aaaagtttacccgaatcaggtaacgcct	Protospacer
************.********** * *

11. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 4, identity: 0.857

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
acaagtttacccaattcaggtacagaca	Protospacer
* ************ ******* ****.

12. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.786

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aggcgtttacccgaatcaggtaaacaca	Protospacer
*.. ********.*********** **.

13. spacer 1.2|1379484|28|NZ_CP024826|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.786

aaaagtttacccaaatcaggtaaagacg	CRISPR spacer
aggcgtttacccgaatcaggtaaacaca	Protospacer
*.. ********.*********** **.

14. spacer 1.1|1379436|29|NZ_CP024826|PILER-CR matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

aaaaataaagtttacctgaaagaggtaaa	CRISPR spacer
gaaaataaagtttacccgaaagaatcgag	Protospacer
.***************.******. ..*.

15. spacer 1.1|1379436|29|NZ_CP024826|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.759

aaaaataaagtttacctgaaagaggtaaa	CRISPR spacer
ctagataaagtttacctgaatgagatacc	Protospacer
  *.**************** ***.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

422766 : 434943

Burkholderia_phage(30.77%)

tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061092773.1\|422766_423558_+	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1
WP_061092772.1\|423572_424028_-	hypothetical protein	F6MIM0	Haemophilus_phage	2.3e-26	42.7
WP_061092771.1\|424024_424732_-	DUF4376 domain-containing protein	A0A0E3JQ06	Enterobacteria_phage	4.1e-14	42.4
WP_000135569.1\|424728_426309_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.3e-84	40.8
WP_000359520.1\|426311_427028_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.8e-22	37.2
WP_000951744.1\|427020_428136_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	6.9e-101	51.4
WP_001093498.1\|428126_428486_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	4.7e-35	64.2
WP_000679401.1\|428584_429286_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	4.9e-12	36.3
WP_001361462.1\|429295_430336_-	phage late control D family protein	A4JWL3	Burkholderia_virus	4.4e-73	44.8
WP_001269711.1\|430323_430533_-	membrane protein	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_000271436.1\|430532_431486_-	chemotaxis protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
WP_001262479.1\|431485_433861_-\|tail	tail protein	A4JWL0	Burkholderia_virus	5.9e-57	26.1
WP_015674804.1\|433962_434091_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000658214.1\|434050_434368_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907502.1\|434418_434943_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0

DBSCAN-SWA_2

1360740 : 1427291

Enterobacteria_phage(47.37%)

portal,transposase,protease,capsid,integrase,terminase,head,tail,lysis,tRNA,holin

attL 1370891:1370937|attR 1419591:1419637

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|1360740_1362126_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143508.1\|1362161_1362683_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|1362790_1363003_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729155.1\|1363004_1363871_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|1364342_1364885_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988384.1\|1365103_1365796_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001361257.1\|1365826_1368436_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691076.1\|1368448_1369456_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001255235.1\|1369466_1369982_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805414.1\|1369984_1370617_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
1370891:1370937	attL	NA	NA	NA	NA
WP_061092788.1\|1370950_1372114_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.7e-198	86.0
WP_000446905.1\|1371969_1372341_-	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_000488407.1\|1372312_1372591_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763385.1\|1372638_1372857_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_001386642.1\|1372955_1373237_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_032255841.1\|1373247_1373805_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	3.2e-62	62.9
WP_045173744.1\|1373801_1373960_-	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-23	98.1
WP_024228451.1\|1373956_1374637_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
WP_052953584.1\|1374633_1375419_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	2.4e-148	99.6
WP_000995439.1\|1375424_1375721_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_061092790.1\|1375796_1376003_-	hypothetical protein	K7P6H3	Enterobacteria_phage	4.2e-28	85.3
WP_061092791.1\|1376534_1376852_-	hypothetical protein	NA	NA	NA	NA
WP_061092792.1\|1376983_1377253_-	hypothetical protein	A0A2H4FNC7	Salmonella_phage	4.8e-32	75.3
WP_064767403.1\|1377333_1378023_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.2e-92	75.4
WP_001067459.1\|1378127_1378358_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	8.5e-22	68.0
WP_061092794.1\|1378439_1378979_+	regulator	M9NZI6	Enterobacteria_phage	7.5e-61	65.6
WP_061092802.1\|1379065_1379995_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	4.7e-111	68.4
WP_001566186.1\|1379991_1380693_+	replication protein P	A0A0P0ZD31	Stx2-converting_phage	7.9e-127	97.0
WP_000145912.1\|1380689_1380992_+	protein ren	A0A0N6WES4	Escherichia_phage	2.6e-42	94.6
WP_001070442.1\|1381059_1381392_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_032139864.1\|1381483_1381591_+	hypothetical protein	NA	NA	NA	NA
WP_000709069.1\|1381648_1383175_+	recombinase family protein	Q3HQV4	Burkholderia_phage	6.1e-31	27.7
WP_001567061.1\|1383286_1383604_+	hypothetical protein	NA	NA	NA	NA
WP_000068668.1\|1383808_1384738_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	3.0e-57	40.0
WP_001309322.1\|1384836_1384938_+	hypothetical protein	NA	NA	NA	NA
WP_001053033.1\|1384934_1385390_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_000224919.1\|1385389_1385560_+	NinE family protein	NA	NA	NA	NA
WP_000774488.1\|1385552_1385843_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
WP_001099712.1\|1385839_1386202_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_032139865.1\|1386198_1386339_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_001205470.1\|1386423_1386780_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.3e-58	92.0
WP_000150292.1\|1386759_1387974_-	hypothetical protein	NA	NA	NA	NA
WP_000355468.1\|1387976_1389152_-	hypothetical protein	NA	NA	NA	NA
WP_001120496.1\|1389443_1389770_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.2e-56	99.1
WP_001518397.1\|1389773_1390250_+	glycoside hydrolase family protein	K7PKX1	Enterobacterial_phage	9.5e-84	96.1
WP_001228695.1\|1390466_1390649_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738423.1\|1390739_1391033_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001307652.1\|1391395_1391590_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000453566.1\|1391978_1392524_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_001518400.1\|1392498_1394424_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000198149.1\|1394420_1394627_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001518401.1\|1394623_1396225_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.1e-309	99.1
WP_001518402.1\|1396205_1397525_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.8e-234	98.6
WP_001299443.1\|1397534_1397867_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_000063252.1\|1397922_1398948_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.9e-191	99.1
WP_001518405.1\|1398989_1399388_+	hypothetical protein	A0A0K2FIR1	Enterobacteria_phage	5.2e-51	84.1
WP_000752994.1\|1399399_1399753_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000683145.1\|1400338_1400734_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.3e-70	100.0
WP_001518408.1\|1400741_1401482_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.4e-126	95.5
WP_001518409.1\|1401497_1401920_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.7e-69	95.0
WP_001518410.1\|1401946_1402336_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	3.4e-55	98.1
WP_001567091.1\|1402328_1404890_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	99.2
WP_000847401.1\|1404886_1405216_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	6.0e-53	92.7
WP_001518412.1\|1405215_1405914_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.9e-130	97.4
WP_024177847.1\|1405918_1406662_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.8e-145	96.0
WP_000090882.1\|1406598_1407201_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	85.1
WP_061092795.1\|1407261_1410741_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.2
WP_001228252.1\|1410808_1411408_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	3.4e-102	92.5
WP_061092796.1\|1411472_1413845_+\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	7.9e-163	68.8
WP_061092797.1\|1413844_1414126_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.7e-17	47.8
WP_000235975.1\|1414135_1414840_+	hypothetical protein	A0A1X7QGH6	Escherichia_phage	5.4e-59	62.3
WP_016245272.1\|1414850_1415144_+	hypothetical protein	NA	NA	NA	NA
WP_000239881.1\|1415336_1416005_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226375.1\|1416543_1418028_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_061092798.1\|1418214_1419168_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177457.1\|1419680_1420442_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
1419591:1419637	attR	NA	NA	NA	NA
WP_001224581.1\|1420624_1421515_-	DUF4434 family protein	NA	NA	NA	NA
WP_100183572.1\|1421515_1424365_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_001393253.1\|1424518_1424851_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_015387340.1\|1424897_1425773_-	class A extended-spectrum beta-lactamase CTX-M-55	A0A1B0VBP7	Salmonella_phage	2.4e-125	82.1
WP_000608644.1\|1426028_1427291_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0

DBSCAN-SWA_3

1776445 : 1785887

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569365.1\|1776445_1777372_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8
WP_000783133.1\|1777376_1778108_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1778088_1778196_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1778255_1778987_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001334139.1\|1779208_1780894_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_001308766.1\|1780890_1781610_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001361590.1\|1781656_1782127_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.5e-81	99.4
WP_001296231.1\|1782167_1782629_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001361589.1\|1782753_1784754_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	94.9
WP_001292746.1\|1784750_1785887_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	5.9e-164	98.4

DBSCAN-SWA_4

1898028 : 1909285

Acanthocystis_turfacea_Chlorella_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000026026.1\|1898028_1899045_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	6.3e-77	44.3
WP_000335121.1\|1900130_1901252_+	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	2.2e-131	64.7
WP_000163129.1\|1901255_1902221_+	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	9.9e-88	51.7
WP_001042472.1\|1902223_1902679_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_001361571.1\|1902690_1904076_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.9e-47	29.5
WP_000868618.1\|1904159_1904906_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.1e-08	41.6
WP_000736848.1\|1904930_1906301_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	28.4
WP_000043484.1\|1906464_1907871_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.4e-37	28.3
WP_000704860.1\|1908118_1909285_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.7e-110	52.2

DBSCAN-SWA_5

1958081 : 2067950

uncultured_Caudovirales_phage(31.25%)

transposase,plate,integrase

attL 1949926:1949985|attR 2069767:2069782

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1949926:1949985	attL	NA	NA	NA	NA
WP_085949836.1\|1958081_1959295_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
1949926:1949985	attL	NA	NA	NA	NA
WP_063117468.1\|1959808_1960243_+	hypothetical protein	NA	NA	NA	NA
WP_063117471.1\|1961744_1962260_+	hypothetical protein	NA	NA	NA	NA
WP_063117478.1\|1962433_1962829_+	hypothetical protein	NA	NA	NA	NA
WP_001300609.1\|1966023_1966806_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
WP_000255946.1\|1966802_1967825_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_063117473.1\|1970234_1970642_-	hypothetical protein	NA	NA	NA	NA
WP_063117474.1\|1970638_1971556_-	radical SAM protein	NA	NA	NA	NA
WP_000532923.1\|1972271_1972988_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001060216.1\|1973329_1974784_-	AMP nucleosidase	NA	NA	NA	NA
WP_000378562.1\|1974885_1976202_-	shikimate transporter	NA	NA	NA	NA
WP_063117475.1\|1976516_1977569_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_130090963.1\|1977829_1985809_-	inverse autotransporter adhesin-like protein YeeJ	NA	NA	NA	NA
WP_077249116.1\|1986335_1986599_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_063117479.1\|1986626_1987193_-	hypothetical protein	NA	NA	NA	NA
WP_085949836.1\|1987808_1989022_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
WP_077252459.1\|1989169_1993258_+	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.5e-23	35.6
WP_061093069.1\|1993268_1993610_+	hypothetical protein	NA	NA	NA	NA
WP_077249107.1\|1993654_1994368_+	RHS repeat-associated core domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	8.2e-23	35.5
WP_052895708.1\|1994370_1994664_+	hypothetical protein	NA	NA	NA	NA
WP_016248851.1\|1994786_1995095_-	putative addiction module antidote protein	NA	NA	NA	NA
WP_021550960.1\|1995098_1995416_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.3e-11	41.9
WP_072693178.1\|1995539_1996802_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.5e-70	38.8
WP_061093028.1\|1997368_1998286_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
1996965:1997046	attR	NA	NA	NA	NA
WP_001011018.1\|1998387_1999338_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
1996965:1997046	attR	NA	NA	NA	NA
WP_061093029.1\|2003405_2004239_-	DUF4225 domain-containing protein	A0A140XBD0	Dickeya_phage	3.0e-24	43.3
WP_061093030.1\|2004408_2005545_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_115314324.1\|2005652_2006027_-	RHS repeat protein	NA	NA	NA	NA
WP_061093031.1\|2006172_2006730_-	hypothetical protein	NA	NA	NA	NA
WP_061102077.1\|2006742_2008275_-	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	4.0e-22	34.0
WP_061093078.1\|2008498_2009026_-	hypothetical protein	NA	NA	NA	NA
WP_061093033.1\|2010778_2011072_-	hypothetical protein	NA	NA	NA	NA
WP_077249119.1\|2011091_2015510_-	DUF4150 domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	6.0e-23	33.7
WP_061093034.1\|2015512_2016694_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_061093035.1\|2016704_2018693_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_016159310.1\|2018906_2019425_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_061093036.1\|2020107_2020614_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_061093037.1\|2020633_2022118_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_061093038.1\|2022120_2022543_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_061093039.1\|2022547_2024371_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_061093053.1\|2024337_2025381_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_061093052.1\|2025397_2026684_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_061093040.1\|2026680_2027214_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_061093041.1\|2027216_2028560_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_123056339.1\|2028642_2029383_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_061093042.1\|2029394_2032133_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.9e-84	31.1
WP_061093043.1\|2032129_2032873_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_061093044.1\|2032877_2034305_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_123056338.1\|2034413_2037845_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_061093046.1\|2037855_2039211_+	hypothetical protein	NA	NA	NA	NA
WP_061093047.1\|2039232_2039712_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_061093048.1\|2039764_2040064_+	hypothetical protein	NA	NA	NA	NA
WP_061093049.1\|2040272_2041064_-	hypothetical protein	NA	NA	NA	NA
WP_061093050.1\|2041343_2042072_+	hypothetical protein	NA	NA	NA	NA
WP_096427310.1\|2042092_2043305_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.1e-102	58.1
WP_072652861.1\|2043606_2044869_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	3.8e-71	37.3
WP_001302302.1\|2045211_2046009_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_021524272.1\|2046470_2047307_+	hypothetical protein	NA	NA	NA	NA
WP_021580845.1\|2047522_2047741_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	1.2e-09	51.9
WP_059256365.1\|2047822_2048113_+	hypothetical protein	NA	NA	NA	NA
WP_032283297.1\|2048157_2048454_+	hypothetical protein	NA	NA	NA	NA
WP_001519860.1\|2048527_2048770_+	hypothetical protein	NA	NA	NA	NA
WP_000505227.1\|2048874_2049225_+	hypothetical protein	NA	NA	NA	NA
WP_061093068.1\|2049288_2049693_-	H-NS histone family protein	NA	NA	NA	NA
WP_061093067.1\|2049850_2050330_-	DUF4756 family protein	NA	NA	NA	NA
WP_001519857.1\|2050484_2051030_-	hypothetical protein	NA	NA	NA	NA
WP_021513673.1\|2052296_2052683_+	hypothetical protein	NA	NA	NA	NA
WP_001519853.1\|2053986_2055423_+	hypothetical protein	NA	NA	NA	NA
WP_001519852.1\|2055439_2056051_+	TIR domain-containing protein	NA	NA	NA	NA
WP_001519851.1\|2056100_2056478_-	hypothetical protein	NA	NA	NA	NA
WP_061093011.1\|2056509_2056983_-	DUF4755 domain-containing protein	NA	NA	NA	NA
WP_021513669.1\|2057417_2057948_+	lipoprotein	NA	NA	NA	NA
WP_000177655.1\|2058041_2058614_-	hypothetical protein	NA	NA	NA	NA
WP_001142313.1\|2058672_2059155_-	hypothetical protein	NA	NA	NA	NA
WP_061093010.1\|2059233_2060715_-	MobA/MobL family protein	NA	NA	NA	NA
WP_001608347.1\|2061364_2061673_+	hypothetical protein	NA	NA	NA	NA
WP_001608346.1\|2061676_2062555_-	hypothetical protein	NA	NA	NA	NA
WP_061093009.1\|2062859_2063225_+	hypothetical protein	NA	NA	NA	NA
WP_061093008.1\|2063221_2063527_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_000243502.1\|2063922_2064480_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_100183574.1\|2064532_2065996_+	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA	NA	NA	NA
WP_061093006.1\|2066138_2066528_-	glyoxalase	NA	NA	NA	NA
WP_061093005.1\|2066729_2067950_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	6.2e-79	41.3
2069767:2069782	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3365977 : 3378905

Escherichia_phage(83.33%)

integrase

attL 3371480:3371493|attR 3379950:3379963

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100183582.1\|3365977_3366910_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	4.6e-167	99.4
WP_000100042.1\|3367497_3368028_-	hypothetical protein	A0A2L1IV11	Escherichia_phage	3.3e-85	97.7
WP_001361862.1\|3368075_3375995_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV38	Escherichia_phage	0.0e+00	97.9
3371480:3371493	attL	NA	NA	NA	NA
WP_000243052.1\|3376019_3376640_-	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	1.3e-117	99.0
WP_001181154.1\|3376957_3377587_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	5.4e-119	99.0
WP_001224627.1\|3378335_3378905_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	9.1e-49	52.2
3379950:3379963	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3602988 : 3631456

Salmonella_phage(65.62%)

terminase,head,tail,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298403.1\|3602988_3603525_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_100183583.1\|3603549_3604185_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001296301.1\|3604393_3605242_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_042043823.1\|3605597_3605924_+	hypothetical protein	NA	NA	NA	NA
WP_042043824.1\|3605850_3606402_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_042043825.1\|3606494_3606656_+	hypothetical protein	G9L6D9	Escherichia_phage	4.7e-19	98.1
WP_042043827.1\|3606743_3607298_-	site-specific DNA recombinase	A0A1S6L009	Salmonella_phage	3.7e-87	87.3
WP_072075255.1\|3607324_3607882_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	8.9e-41	50.3
WP_016234458.1\|3607881_3608496_+\|tail	tail assembly chaperone	Q9MCR5	Enterobacteria_phage	1.1e-60	60.5
WP_050190118.1\|3608502_3609306_-\|tail	tail fiber protein	M1TAS6	Escherichia_phage	1.1e-36	40.1
WP_100183584.1\|3609305_3609986_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.9e-103	78.3
WP_050188012.1\|3609982_3611182_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.2e-184	83.4
WP_001270634.1\|3611181_3611535_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.1e-55	90.6
WP_100183585.1\|3611534_3612287_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	4.5e-88	66.7
WP_089643999.1\|3612352_3613078_-	hypothetical protein	NA	NA	NA	NA
WP_100183586.1\|3613080_3614145_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	3.2e-156	81.4
WP_000155114.1\|3614147_3614450_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.8e-49	91.0
WP_016233441.1\|3614449_3615037_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.1e-84	89.1
WP_100183587.1\|3615036_3617025_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	3.0e-272	74.7
WP_000393954.1\|3617202_3617655_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	4.7e-56	72.7
WP_000109249.1\|3617658_3618099_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
WP_100183588.1\|3618109_3619255_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.4e-160	73.5
WP_000503647.1\|3619258_3619822_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
WP_021529139.1\|3619796_3620186_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.1e-65	95.3
WP_021529140.1\|3620172_3620727_-	hypothetical protein	A0A0M4S631	Salmonella_phage	7.0e-78	82.1
WP_100183589.1\|3620723_3621131_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	8.7e-70	94.8
WP_100183590.1\|3621096_3621465_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	9.4e-55	90.2
WP_050188015.1\|3621505_3622447_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.9e-156	87.2
WP_050188016.1\|3622458_3622962_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.4e-72	82.6
WP_100183591.1\|3622966_3624199_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	7.6e-218	95.1
WP_157787427.1\|3624213_3624948_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	8.3e-95	83.7
WP_000113486.1\|3624838_3626305_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.0e-261	91.8
WP_050187976.1\|3626304_3627927_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	6.0e-311	95.0
WP_050187977.1\|3627929_3628481_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	1.2e-66	69.8
WP_001050348.1\|3628503_3628959_+	hypothetical protein	NA	NA	NA	NA
WP_000113283.1\|3629096_3629282_-	hypothetical protein	NA	NA	NA	NA
WP_001408436.1\|3629425_3629818_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	2.3e-51	84.5
WP_100183593.1\|3629801_3630278_-	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	3.5e-86	96.2
WP_000781776.1\|3630281_3630623_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.8e-53	91.9
WP_100183594.1\|3631033_3631456_-	antitermination protein Q	U5P0A5	Shigella_phage	7.8e-13	34.7

DBSCAN-SWA_8

3634840 : 3646623

Bacteriophage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001046700.1\|3634840_3635470_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	1.4e-34	42.2
WP_032317021.1\|3636786_3637689_+	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
WP_100183595.1\|3637691_3638993_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	8.0e-133	55.9
WP_000769005.1\|3639008_3639557_+	DUF2815 family protein	Q775A5	Bordetella_phage	2.1e-66	65.9
WP_053901690.1\|3639608_3640247_+	hypothetical protein	H6WRY3	Salmonella_phage	3.9e-72	69.3
WP_000490740.1\|3640314_3640584_-	hypothetical protein	NA	NA	NA	NA
WP_100183596.1\|3640640_3642704_+	DNA polymerase	Q775A3	Bordetella_phage	1.1e-274	67.4
WP_000008820.1\|3642709_3642925_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_000637724.1\|3642921_3643221_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	2.7e-28	63.2
WP_000312947.1\|3643210_3643480_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	5.1e-26	65.9
WP_032194263.1\|3643484_3644054_-	hypothetical protein	NA	NA	NA	NA
WP_000559954.1\|3644007_3644256_-	hypothetical protein	NA	NA	NA	NA
WP_000199789.1\|3644279_3645158_-	hypothetical protein	NA	NA	NA	NA
WP_000384174.1\|3645225_3646623_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	3.2e-212	73.3

DBSCAN-SWA_9

4008233 : 4049740

Escherichia_phage(66.67%)

transposase,protease,tRNA,integrase

attL 3994181:3994195|attR 4041144:4041158

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3994181:3994195	attL	NA	NA	NA	NA
WP_023908971.1\|4008233_4008731_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|4008825_4009533_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001300912.1\|4009612_4010344_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_022646102.1\|4010356_4011307_+	glutathione synthase	NA	NA	NA	NA
WP_001350133.1\|4011415_4011979_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|4011978_4012395_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_100183598.1\|4012607_4013588_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997798.1\|4013605_4014310_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|4014327_4014894_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|4014890_4015181_+	YggU family protein	NA	NA	NA	NA
WP_001174738.1\|4015188_4015782_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239941.1\|4015774_4016911_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000784004.1\|4017223_4018210_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000577034.1\|4018254_4018758_+	TRAP transporter small permease	NA	NA	NA	NA
WP_000378954.1\|4018757_4020059_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_022646104.1\|4020114_4021122_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394132.1\|4021238_4022285_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|4022460_4023180_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001178590.1\|4023200_4023341_-	hypothetical protein	NA	NA	NA	NA
WP_001107566.1\|4023363_4023690_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|4023689_4024409_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001361244.1\|4024569_4025622_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|4025649_4025925_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|4025989_4027069_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001049791.1\|4027270_4028527_+	nucleoside permease	NA	NA	NA	NA
WP_022646105.1\|4028575_4030711_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234532.1\|4031103_4031811_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_100183599.1\|4032189_4033452_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.6e-77	38.1
WP_001301088.1\|4036506_4037007_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_001605858.1\|4037139_4038759_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_000466879.1\|4039489_4040191_-	hypothetical protein	NA	NA	NA	NA
WP_071600693.1\|4040245_4040428_-	hypothetical protein	NA	NA	NA	NA
WP_100183600.1\|4040536_4040755_-	hypothetical protein	NA	NA	NA	NA
WP_085948178.1\|4040809_4042022_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
4041144:4041158	attR	NA	NA	NA	NA
WP_100183601.1\|4041988_4042105_+	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	3.3e-06	96.0
WP_001013324.1\|4042888_4043314_-	hypothetical protein	NA	NA	NA	NA
WP_001605860.1\|4043310_4043694_-	hypothetical protein	NA	NA	NA	NA
WP_001300609.1\|4043813_4044596_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
WP_000255946.1\|4044592_4045615_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_072146520.1\|4046854_4047004_-	hemolysin activation protein	NA	NA	NA	NA
WP_085947771.1\|4048577_4049740_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4964 : 30665

Vibrio_phage(55.0%)

tail,plate,capsid,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000424604.1\|4964_5228_-	hypothetical protein	H6WRY4	Salmonella_phage	9.8e-14	46.2
WP_000356589.1\|5251_5539_-	hypothetical protein	NA	NA	NA	NA
WP_024189035.1\|6182_7019_-	replication initiator protein RepA	NA	NA	NA	NA
WP_100183613.1\|7344_7899_-	recombinase family protein	A0A1B0VBM1	Salmonella_phage	1.2e-85	86.7
WP_024133807.1\|8034_8877_+\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.3e-38	60.6
WP_000972114.1\|8878_9406_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	1.9e-80	84.6
WP_100183614.1\|9434_9968_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	2.5e-93	96.6
WP_096942616.1\|9970_12247_-\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	2.4e-177	53.9
WP_000763347.1\|12277_12859_-\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	7.2e-17	40.0
WP_001406393.1\|13971_14292_-	hypothetical protein	NA	NA	NA	NA
WP_000635200.1\|14288_14756_-\|tail	phage tail protein	NA	NA	NA	NA
WP_000998645.1\|14752_15373_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	1.8e-29	51.6
WP_000944893.1\|15375_16377_-	hypothetical protein	A0A067ZG47	Vibrio_phage	1.3e-69	42.5
WP_001406394.1\|16577_18710_-\|tail	phage tail tape measure protein	A0A097P6S4	Vibrio_phage	3.7e-18	39.6
WP_000450805.1\|19524_19806_-	hypothetical protein	A0A0C5AEP1	Bacteriophage	1.0e-05	37.4
WP_000070729.1\|19815_20337_-\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	1.5e-50	57.8
WP_000542267.1\|20353_21817_-\|tail	phage tail protein	A0A059WKP9	Vibrio_phage	5.4e-146	53.6
WP_001284547.1\|21816_22107_-	hypothetical protein	NA	NA	NA	NA
WP_000609133.1\|22107_22593_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	3.0e-16	37.4
WP_001083980.1\|22589_22934_-	hypothetical protein	NA	NA	NA	NA
WP_001523066.1\|22933_23326_-	hypothetical protein	NA	NA	NA	NA
WP_100183615.1\|23326_24370_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	6.7e-74	47.9
WP_001209256.1\|24390_24774_-	hypothetical protein	NA	NA	NA	NA
WP_032322647.1\|24783_25851_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	1.6e-78	48.0
WP_024227017.1\|25840_27415_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	7.0e-192	65.9
WP_100183616.1\|27411_27651_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	4.4e-13	50.7
WP_001019009.1\|29523_30075_-	hypothetical protein	K4ICN8	Acidithiobacillus_phage	1.7e-07	29.4
WP_001185429.1\|30074_30665_-	ParB N-terminal domain-containing protein	A0A067ZI74	Vibrio_phage	1.6e-40	58.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP024828

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30132 : 39879

Escherichia_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|30132_30837_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002903955.1\|32483_33386_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|33647_34409_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|34429_35290_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_001067855.1\|35426_36131_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001549892.1\|36523_36763_-	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_000343760.1\|36864_38085_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
WP_001549893.1\|38173_38836_-	recombinase family protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_000516402.1\|39216_39879_+	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP024827

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15697 : 67854

Escherichia_phage(43.48%)

bacteriocin,transposase,integrase

attL 44873:44932|attR 67085:67906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066954.1\|15697_16438_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
WP_014640565.1\|16558_16747_-	hypothetical protein	NA	NA	NA	NA
WP_001259759.1\|18555_18759_-	hypothetical protein	NA	NA	NA	NA
WP_014640552.1\|18736_18973_-	colicin V immunity protein	NA	NA	NA	NA
WP_001105066.1\|19436_19718_-	hypothetical protein	NA	NA	NA	NA
WP_000203272.1\|20075_20603_-	colicin B immunity protein	NA	NA	NA	NA
WP_001312845.1\|20846_21662_+\|bacteriocin	lipid II-degrading bacteriocin colicin M	NA	NA	NA	NA
WP_000864812.1\|21711_22065_-	colicin M immunity protein	NA	NA	NA	NA
WP_000016493.1\|22242_23034_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.7e-51	90.2
WP_000796228.1\|23030_23720_-	hypothetical protein	NA	NA	NA	NA
WP_000493379.1\|23763_24114_-	hypothetical protein	NA	NA	NA	NA
WP_000952217.1\|24658_25747_+	transcriptional repressor PifC	NA	NA	NA	NA
WP_001300609.1\|27351_28134_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
WP_000255946.1\|28130_29153_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_000963206.1\|29982_30882_-	nucleotide-binding protein	NA	NA	NA	NA
WP_000111771.1\|30871_31162_-	hypothetical protein	NA	NA	NA	NA
WP_001261287.1\|31457_31688_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044768.1\|31684_32101_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_000350638.1\|32262_34401_-	AAA family ATPase	NA	NA	NA	NA
WP_000343085.1\|34754_35012_+	hypothetical protein	NA	NA	NA	NA
WP_000194575.1\|35011_35602_+	hypothetical protein	NA	NA	NA	NA
WP_000521603.1\|37612_38230_+	hypothetical protein	NA	NA	NA	NA
WP_001089727.1\|38522_39602_-	permease	NA	NA	NA	NA
WP_001175594.1\|39706_40030_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071819239.1\|40190_40673_+	hypothetical protein	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-40	68.5
WP_001067834.1\|40563_41268_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_001067834.1\|42727_43432_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000018329.1\|43971_44787_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
44873:44932	attL	NA	NA	NA	NA
WP_001067855.1\|44937_45642_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001011939.1\|45785_46427_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001239317.1\|46576_47077_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|47156_47861_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845048.1\|48308_49322_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|49477_49951_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|50020_50725_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_072794601.1\|51095_54062_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
WP_000427619.1\|54140_55145_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|55326_55503_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|55832_56648_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001082320.1\|56708_57512_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480972.1\|57511_58348_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000027057.1\|58578_59439_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|59621_60179_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000608644.1\|60742_62005_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_015387340.1\|62260_63136_+	class A extended-spectrum beta-lactamase CTX-M-55	A0A1B0VBP7	Salmonella_phage	2.4e-125	82.1
WP_001393253.1\|63182_63515_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_085948178.1\|65512_66726_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_001067855.1\|67149_67854_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
67085:67906	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024826

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP024828

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP024827

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection