CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024880	Klebsiella aerogenes strain AR_0018 chromosome, complete genome	4 crisprs	DEDDh,WYL,DinG,cas3,csa3	2	2	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024880_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024880_1

1162601-1162741

Orphan

Consensus_repeat	Method
TGTGCGATTTGGTAGCCCGGACAAGGCGCAATGCGCCGCCTCCGGGAAAATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024880_1

>merge|NZ_CP024880|1|1162601-1162741|CRISPRCasFinder
TGTGCGATTTGGTAGCCCGGACAAGGCGCAATGCGCCGCCTCCGGGAAAATCCCCGGTGGCGCTAGTGCTTACCGGGGCTACAGCGCTGTGCGATTTGGTAGCCCGGATAAGGCGCAATGCGCCGCCTCCGGGAAAATCCC

>NZ_CP024880|1|1|1162601-1162741|CRISPRCasFinder
TGTGCGATTTGGTAGCCCGGACAAGGCGCAATGCGCCGCCTCCGGGAAAATCCC	CGGTGGCGCTAGTGCTTACCGGGGCTACAGCGC
TGTGCGATTTGGTAGCCCGGATAAGGCGCAATGCGCCGCCTCCGGGAAAATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024880.1\|WP_032706657.1\|1159673_1160564_+\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	unknown	unknown	gnl\|CDD\|236719
NZ_CP024880.1\|WP_048230149.1\|1162765_1164046_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP024880.1\|WP_015704437.1\|1166146_1166773_-\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NZ_CP024880.1\|WP_020079583.1\|1171648_1172806_+\|CdaR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183155
NZ_CP024880.1\|WP_015368181.1\|1165725_1166070_+\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP024880.1\|WP_015704429.1\|1153473_1153608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024880.1\|WP_015368187.1\|1158876_1159674_+\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|182561
NZ_CP024880.1\|WP_007373199.1\|1149087_1149543_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP024880.1\|WP_015368179.1\|1166807_1167608_-\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575
NZ_CP024880.1\|WP_032716046.1\|1168382_1169897_+\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP024880.1\|WP_080966003.1\|1164225_1165644_+\|H(+)/Cl(-)-exchange-transporter-ClcA	unknown	unknown	gnl\|CDD\|235385
NZ_CP024880.1\|WP_015704441.1\|1170038_1171472_+\|serine-endoprotease-DegP	unknown	unknown	gnl\|CDD\|236802
NZ_CP024880.1\|WP_048230635.1\|1172842_1175818_-\|viral-enhancin-protein	unknown	unknown	gnl\|CDD\|367432
NZ_CP024880.1\|WP_015368189.1\|1153831_1156384_+\|bifunctional-glycosyl-transferase/transpeptidase	unknown	unknown	gnl\|CDD\|236544
NZ_CP024880.1\|WP_045411605.1\|1156626_1158831_+\|ferrichrome-porin-FhuA	unknown	unknown	gnl\|CDD\|236643
NZ_CP024880.1\|WP_048230633.1\|1151031_1153461_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP024880.1\|WP_045386052.1\|1150422_1150959_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|185079
NZ_CP024880.1\|WP_015704439.1\|1167600_1168299_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP024880.1\|WP_015368194.1\|1149706_1150423_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP024880.1\|WP_045411611.1\|1160560_1162543_+\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720

Protein	Function_ID	Function_description	E-value
NZ_CP024880.1\|WP_032706657.1\|1159673_1160564_+\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	0
NZ_CP024880.1\|WP_048230149.1\|1162765_1164046_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP024880.1\|WP_015704437.1\|1166146_1166773_-\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	3.74484e-128
NZ_CP024880.1\|WP_020079583.1\|1171648_1172806_+\|CdaR-family-transcriptional-regulator	gnl\|CDD\|183155	PRK11477, PRK11477, CdaR family transcriptional regulator.	0
NZ_CP024880.1\|WP_015368181.1\|1165725_1166070_+\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.42921e-81
NZ_CP024880.1\|WP_015368187.1\|1158876_1159674_+\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	gnl\|CDD\|182561	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC.	0
NZ_CP024880.1\|WP_007373199.1\|1149087_1149543_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	8.14556e-92
NZ_CP024880.1\|WP_015368179.1\|1166807_1167608_-\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	8.32544e-165
NZ_CP024880.1\|WP_032716046.1\|1168382_1169897_+\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP024880.1\|WP_048230633.1\|1151031_1153461_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP024880.1\|WP_015704441.1\|1170038_1171472_+\|serine-endoprotease-DegP	gnl\|CDD\|236802	PRK10942, PRK10942, serine endoprotease DegP.	0
NZ_CP024880.1\|WP_048230635.1\|1172842_1175818_-\|viral-enhancin-protein	gnl\|CDD\|367432	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module. This family is the putative binding domain for the substrates of enhancin, and other similar metallopeptidases. This is not the enzymically active, peptidase, part of the proteins - see pfam13402.	1.00843e-23
NZ_CP024880.1\|WP_015368189.1\|1153831_1156384_+\|bifunctional-glycosyl-transferase/transpeptidase	gnl\|CDD\|236544	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed.	0
NZ_CP024880.1\|WP_045411605.1\|1156626_1158831_+\|ferrichrome-porin-FhuA	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP024880.1\|WP_080966003.1\|1164225_1165644_+\|H(+)/Cl(-)-exchange-transporter-ClcA	gnl\|CDD\|235385	PRK05277, PRK05277, H(+)/Cl(-) exchange transporter ClcA.	0
NZ_CP024880.1\|WP_045386052.1\|1150422_1150959_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|185079	PRK15124, PRK15124, RNA 2',3'-cyclic phosphodiesterase.	4.41487e-118
NZ_CP024880.1\|WP_015704439.1\|1167600_1168299_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	1.01373e-138
NZ_CP024880.1\|WP_015368194.1\|1149706_1150423_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	2.27632e-142
NZ_CP024880.1\|WP_045411611.1\|1160560_1162543_+\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0

>NZ_CP024880.1|WP_045411611.1|1160560_1162543_+|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MNARFSPLAMILLAVLLVAAFALSIVNLQVALPYAQWRQALWQPDSDNIAQMLFHYSLLPRLAVSLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGMTVTTLWAIPGVLASQFAALAGACLVGALVFGVSWGKRLSPVTLILAGLVVSLYCGAVNQLMVIFHHDQLQSMFLWSTGTLTQTDWSVAQRLWPQLLGGAMLTLLLLRPLTLMGLDDGVARNLGLALSLARLGVLTLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLSRLVLAALLGALILWLSDQIILWLSRIWREVSTGSVTALIGAPLLLWLLPRLRSISAPVMNGGDKALIERRNVQWFALGGLALMLLAVTAALTFGRDAQGWQWASGDLLEQLMPWRWPRVFSALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFFVPGNAFVWLLPAGSLGAAATLLVILVAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQILTWMSGSTYSATPEMVLRSGVVMLALLALAPLCRRWLTILPLGGEAARAVGMALTPSRIGLLLLAASLTATATLTIGPLSFVGLMAPHIARMMGFRRTMPHMVISGLIGGMLLVFADWCGRMIMFPYQIPAGLLSTFIGAPYFIYLLRKQSR
>NZ_CP024880.1|WP_032706657.1|1159673_1160564_+|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD
MENSNFFSRRRLLTAMALSPLLWQMRGAQAANVDPQRVVALEWLPAELLLALGVTPYGVADIPNYNLWVNEPALPASVIDVGLRTEPNLELLTQMKPSFIVWSAGYGPSPEKLARIAPGRGFTFSDGKRPLAMAQRSLQEMADLLGKQQQAKRHLAEFDALMESLRPRFVDRDDRPLLMISLLDARHVLVFGENCLFQEVLDRFGIKNAWHGEAAFWGSITVGIDRLAEFKEADVICFDHGNDREMAQLMATPLWQAMPFVRAGRFQRLPAVWFYGATLSAMHFARVLADAQGRAV
>NZ_CP024880.1|WP_015368187.1|1158876_1159674_+|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC
MQEQTPYSETTFALNRVTFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGDVLLDGQPLDSWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIALVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRSETLEQIYGIPMGILPHPAGAAPVSFVY
>NZ_CP024880.1|WP_045411605.1|1156626_1158831_+|ferrichrome-porin-FhuA
MARLKTAQPNHSLRKIAVVVATAVSGMSVYAQAAEQPKEETLVVTAAPASQESAWGPAPTIAAKRSATATKTDTPIEKTPQSISVVTREEMDMKQPATVKEALSYTPSVFSTRGSSTTYDVVTIRGFTTSSTVNTNQYLDGMKLQGNNYSEVSMDPYFLERVEVMRGPTSVLYGNSNPGGIVSMVSKRPTTEPLKEVQFKMGTDNLWQTGFDFSDAIDDDGVWSYRLTGLGRSQDAQQQMAKSTRYAIAPSFSWRPDDKTDFTFLSNFQNDPDAGYYGWLPREGTVVPYYDANGKAHKLPTDFNEGESDNKMARRQQMVGYSFSHQFDDTFTVRQNLRYADVHTLYRSVYGYGYQEPGKIQRNYVRSDEHLNTFTVDTQLQSDFATGAVNHTLLTGVDYSRMRNDVDADYGTADAISMSNPQYGNPNIVLNSKYAVLNRMEQTGLYAQDQMEWDKWVMTLGGRYDYATTSTFTRSTSNMAENHDQQFSWRGGINYLFDNGISPYFSYSESFEPVSGSGLNGKPFDPSRGKQYEAGVKYVPKDMPVVVTAAVYQLTKDKNLTADPNDTSGFFSVQTGEIRSRGFELEAKAAVNANINLTAAYSYTDAEYTHDTVFEGKRPAEVPRNMASLWADYTFHETALSGLTIGAGARYIGSTVSYYKNVEGKKNDSFNVAGYALMDATVKYDLARFGLPGSSVGVNVNNLFDREYVSSCYSEYACYWGAERQVVATATFRF
>NZ_CP024880.1|WP_015368189.1|1153831_1156384_+|bifunctional-glycosyl-transferase/transpeptidase
MAGDDREPIGRKGRPSRPAKQKVTRRRVREEDYDDDYDDDYEDERPMPKKGKGKGNKPRRKRSWLWLLVKLGIVFAVIIAAYGVYLDQKIRSRIDGKVWELPAAVYGRMVNLEPDMQISKNEMVRLLNATQYRQVSAMTRPGEYTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLDTIENMDNNRQFGFFRLDPRLITMLQSANGEQRLFVKRSGFPDLLVDTLLATEDRHFYEHDGISLYSMGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIVDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQNIIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDKVKDLSGVKIFTTFDPVAQDAAEKAAIEGIPVLKKQRKLPDLETAMVVVDRFTGEVRAMVGGAEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPNQYRLNTWIADAPVTIRLSNGQTWSPQNDDRRFSGQVMLVDALTRSMNVPTVNLGMSLGLPAITDTWQKLGVPKDQLNAVPAMILGALNLTPIEVAQAFQTIASGGNRATLSALRSVIAEDGTVLYQSYPQAERAVPAQAAYMTLWTMQQVVQRGTGRQLGAKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLALTPPEDVVDMGVDSNGYFQCSGGMRTLPVWTTSPDALCRQGEALQQQQQQQQEANNPFNQSGQQQPANQPQQQQQQPAKQEKSDGVAGWIKDMFGGN
>NZ_CP024880.1|WP_015704429.1|1153473_1153608_+|hypothetical-protein
MLWAWFRKSLAAVTRRNIYVIKKHHILPFIAFYGCKMLVKNGAD
>NZ_CP024880.1|WP_048230633.1|1151031_1153461_+|ATP-dependent-helicase-HrpB
MSSLPVAAILPELLSALQQAPQVLLNAPTGAGKSTWLPLQILADGNIDGRIILLEPRRLAARNVAQRLAELLGEKPGETIGYRMRAESCVGPNTRLEVVTEGILTRTLQHDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQRLLPEAPVVVSEGRAFPVERRFAPLASHQRFAEAVAIAAADLLREEQGSMLLFLPGVGEIQRVQEQLSERVASDVLLCPLYGALPLSEQRKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDPRTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAAAQSDPEILQSDLSGLLLELLQWGCRDPAELRWLDLPPAINLAAARRLLTALSALEGERLSAHGRKMATLGNDPRLAAMLTAADSADDAATAAKLAAILEEPPRGGNSDLSAAFARQQGNWQQRAQQLLKRLTSRGGQPDAARMAALLAPAFADRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQGSSAPDARILLALPLDIDQLVAQRPELIQRSDTVEWDEAQGTLKAWRRSCIGQLVIKTQPLAKPSEAELHQAMLNGIRDKGLGVLNWTPEAEQLRLRLYCAAQWLPEADWPAVDDASLLASLEAWLLPQMTGVHSLRALKAVDLRQALQNWLPWTLRQKLDSELPTHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAATPRIAEGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
>NZ_CP024880.1|WP_045386052.1|1150422_1150959_-|RNA-2',3'-cyclic-phosphodiesterase
MSEPKRLFFALELPKAIQKQIIHWRATHFADDAGRPVAADNLHLTLAFLGDVSAEKQRALSAMAGRIQQPPFTLTLDDAGQWLRSRVVWLGTRQPPRGMLQLANMLRAQAARSGCYQSPQPFHPHITLLRDARHAVPIPPPGFCWQVPVNEFVLYESSFIRGRTRYNALERYPFTREL
>NZ_CP024880.1|WP_015368194.1|1149706_1150423_-|DNA/RNA-nuclease-SfsA
MLFTPPLQSATLIKRYKRFLADVITPEGQALTLHCPNTGAMTGCAAPGDTVWYSTSDNPKRKYAHTWELTETRQGAVICVNTLRANTLAKEAVLAGNIPELAGYNILKSEVKYGEENSRIDLMLQAEDRRNCYIEVKSVTLAEKEYGYFPDAVTARGQKHLRELMSVAAAGHRAVILFAVLHSAIDRFSPAHHIDAKYAQLLIEAQEKGVEILAWKAELSTKMMTLNKPIAVALTPGN
>NZ_CP024880.1|WP_007373199.1|1149087_1149543_-|RNA-polymerase-binding-protein-DksA
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGFCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG
>NZ_CP024880.1|WP_048230149.1|1162765_1164046_-|glutamate-1-semialdehyde-2,1-aminomutase
MSKSENLYNAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQDIACIIVEPVAGNMNCIPPQPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQSYYGVEPDLTCLGKIIGGGMPVGAFGGRREVMDALAPTGPVYQAGTLSGNPIAMAAGFACLSEVAQPGVHETLTELTNQLADGLLNAARETGIPLVVNNVGGMFGIFFTEAETVTCYQDVVKCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSIAHSEEDINNTIDAARRVFAKL
>NZ_CP024880.1|WP_080966003.1|1164225_1165644_+|H(+)/Cl(-)-exchange-transporter-ClcA
MKAETPSFEAHQFVRVRRSDAVRRLIQRDKTPLAVLLMAAVVGTLAGLVGVAFEKSVNWVQNQRIGALVQVADHWYLVWPLAFILSGLLAMVGYFLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPMVQLGGNIGRMVVDVFRLRSPEARHTLLATGAASGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEGAIIEVGKLSNAPVNTLWLYLVLGMIFGCFGPLFNALVLRTQDTFQRFHGGNIKKWVLIGGLIGGLCGLLGLMQPTAVGGGFNLIPIAAAGNFSVGLLLFIFIARVITTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAIPLFPSYHLDAGTFAIAGMGALLAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILQRTLAKQKAEEAAKAQQVPRENT
>NZ_CP024880.1|WP_015368181.1|1165725_1166070_+|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLEFTEAAANKVKHLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQINEGDMTIEKQGVGLVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSV
>NZ_CP024880.1|WP_015704437.1|1166146_1166773_-|TRIC-cation-channel-family-protein
MLVYWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALANGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRMPKWVLPVLDAVGLAVFVGIGVNKAFIAHTGPLVAICMGVVTGVGGGIIRDVLAREVPMILRTEIYATACIVGGIVHATAHYTFQLSLENSAMLGMMVTLVIRLAAIRWHLKLPTFALDDNGRS
>NZ_CP024880.1|WP_015368179.1|1166807_1167608_-|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKSLQKALTALLLLAPAWLFAAPRVVTLSPANTELAFAAGITPVGVSSYSDYPPAAAKIEQVASWQGMNLERIVALKPDLVLAWRGGNAERQVNQLSSLGIKVIWVETGSIEQIISALRMLAPWSPQPEKARQAAQAMQDDYQALKARYANAPKKRVFLQFGANPLFTSNSASIQNQVLSLCGGENIFAASRVPWPQVSREQVLSRHPQAIVITGDASKIPAVDRYWQNQLTISLIALHSDWFERAGPRIILAAKQLCTALEQVK
>NZ_CP024880.1|WP_015704439.1|1167600_1168299_-|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMEEEVTLLRDKIENRQTISIGGSEIYTGQLHGTEVALLKSGIGKVAAAMGATLLLERCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAETCIKALNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAVAVEMEATAIAHVCHNFSIPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVENLVQNLARG
>NZ_CP024880.1|WP_032716046.1|1168382_1169897_+|dGTPase
MANIDFRNKIHWRRRYRSPQGVETEREILRVFESDRGRIINSPAIRRLQQKTQVFPLERNAAVRTRLTHSLEVQQVGRYIAKEVLSRLKEQKLLECYGLDELSGPFESVVEMACLMHDIGNPPFGHFGEAAINDWFSKRLVPKDAASQPLSQDRCQVDALRLHDGEGVLNELRRKVRQDLCCFEGNAQGIRLVHTLMRMNLTWTQVGCILKYTRPAWWRGETLASHSYLMKKPGYYLAEEEYIARLRKELDLAPYNRFPLTWIMEAADDISYCVADLEDAVEKRIFSAEQLYQHLYDAWGTHEKGSLFAQVVENAWEKSRANSLSRSTEDQFFMYLRVNTLNKLVPYAAHRFIENLPAIFSGDFNHALLEDDSDCSQLLELYKNVAIKQVFSHPDVEQLELQGYRVISGLLDIYEPLLKLSLEEFSQLVEQDRVRSLPIASRLFQKLSTRHRLAYVEAVNKLSRDTEEYPVLEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVE
>NZ_CP024880.1|WP_015704441.1|1170038_1171472_+|serine-endoprotease-DegP
MKKTTLAMSALALSLGLALSPLSASAAETASSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDNSPFCQDGSPFQSSPFCQGGGQGAPGDNAQQQKFMALGSGVIIDAAKGYVVTNNHVVDNATTIKVQLSDGRKFDAKVVGKDPRSDIALIQIQDPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTEQMVKFGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPGSAAAKAGIKAGDVITTLNGKPISSFAALRAQVGTMPIGSKVELGLLRDGKPVNVTVELQQSNQNQVDSSSIFNGIQGAEMSNKGQDKGVVVSNVKAGTPAAQIGLKKGDIIVGANQQPVKNIADLRKIFDAKPSVLALNIQRGDTSIYLLMQ
>NZ_CP024880.1|WP_020079583.1|1171648_1172806_+|CdaR-family-transcriptional-regulator
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALNEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQTALTTPDRNNLVAIVSLTEMVVLKPALNAFGRWDADDHCKRVEQLITRMKENGQLQFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLTRLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLDEQR
>NZ_CP024880.1|WP_048230635.1|1172842_1175818_-|viral-enhancin-protein
MTQEIEQKCYTLQSATWLDKAGFEKGRKHDRQALGFILPANTVLKIRQTDLSNGISTLRLMCDDSAVEKSSALTTNWTTISTTVDSVPFVDTLFTDSPCEFSVIYQQPAATKPLPSWKSGQSEETFFVDWENNKSSFALVDLDVINLLLPYADRDNAMKAGLASLHRFYNHLFTRYNDWAGLSENPDSQWNQNVANRYFLRADKHGVGSAYYNTNWCAQTASTVGEGWLDNVATQWVILHEIGHGYQGKFMQDPTLSVSEVWNNIYASFYQQLTLSQDNHLYTDGWLYNYGKLAAQEAQLVNYITDKTPVTSWGLRSRLQFLMLMLFKAGIASFRTFNQNYRQLANSESFQPSDHQLADMLATAIATSAGYDVTPFIELCGLTLKNATRENIVSLATKPLYPLYRFLPQSEWDSARQQLGLDSFFWLVDNSELAILGKTGALTLTLNIDRPEQIYGQTLAIKDNCGNHYSLVINSDVLTLKDMPIGVYQVELPKGRSQKYRPDISYITVKEGANTVTVNYVQQNDTSERNVTISFLGYSDAPFAHLDVDYENQQLILNVTSANPHSYYPGTLYAAVSVLSANGEKVFERKMTGTNCATGKVIIPFSPHYHLYITHMEPGRLKTSPGYLTLVAREKYQLMRIDDNGLYNFILGNSPADDLEAIFEHNAQVIRTQPSLVAQEECVCKNDLWLMLPHIEEPRRSELLEAYADVLPQDNNDPGELTGKSVTLDLRGQGNNEFCQIVIDNKQRAMTVATRAGTPHSYYTTHTYASITVTAEDDTVVYQRSYTGATNNLANSETITLAEGMIIEIFHDEPYRSSATNGTTQNAVTLKQHNRWRVVKTGLEVYALAPDEPDEEATDTEEETALYGDSFSWQLLGDDDVCFAGMEMDIGSGALTFSANAVVPNKHFTTTYATVNVYNTRGSVVYRQSIKGSSQLGDYVDTAILDEGYTIEVFHAEAGNRSVIINPLNGNSWQQPNTVIWQVTPRGLQRL

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Crispr_ID: NZ_CP024880_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024880_2

1813839-1813911

Orphan

Consensus_repeat	Method
CGGGTGGCGGCTACGCCTTACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024880_2

>merge|NZ_CP024880|2|1813839-1813911|CRISPRCasFinder
CGGGTGGCGGCTACGCCTTACCCGGGCTACCCGCGGTGCCGTTTTTTGTCGGGTGGCGGCTAACGCCTTACCC

>NZ_CP024880|2|2|1813839-1813911|CRISPRCasFinder
CGGGTGGCGGCTACGCCTTACCCG	GGCTACCCGCGGTGCCGTTTTTTGT
CGGGTGGCGGCTAACGCCTTACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024880.1\|WP_015367567.1\|1812230_1813823_+\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP024880.1\|WP_047036390.1\|1806713_1807754_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381317
NZ_CP024880.1\|WP_015367574.1\|1805029_1805497_+\|manganese-binding-transcriptional-regulator-MntR	unknown	unknown	gnl\|CDD\|182927
NZ_CP024880.1\|WP_048230725.1\|1816771_1818073_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP024880.1\|WP_047054316.1\|1811268_1812051_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NZ_CP024880.1\|WP_015367575.1\|1804717_1804843_-\|manganase-accumulation-protein-MntS	unknown	unknown	gnl\|CDD\|380222
NZ_CP024880.1\|WP_020079297.1\|1818369_1819443_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP024880.1\|WP_020079300.1\|1809347_1810064_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP024880.1\|WP_015704835.1\|1825301_1826057_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP024880.1\|WP_048230724.1\|1814392_1816756_-\|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl\|CDD\|224418
NZ_CP024880.1\|WP_015367569.1\|1810155_1811070_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182341
NZ_CP024880.1\|WP_042895107.1\|1824246_1825146_-\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP024880.1\|WP_015367576.1\|1802871_1804449_-\|phosphoethanolamine-transferase	unknown	unknown	gnl\|CDD\|225105
NZ_CP024880.1\|WP_045411194.1\|1820844_1821660_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|272905
NZ_CP024880.1\|WP_015367558.1\|1826056_1827292_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP024880.1\|WP_100278900.1\|1805493_1806606_+\|anion-transporter	unknown	unknown	gnl\|CDD\|238537
NZ_CP024880.1\|WP_042895110.1\|1821810_1824243_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NZ_CP024880.1\|WP_015704832.1\|1819439_1820705_-\|DUF1479-domain-containing-protein	unknown	unknown	gnl\|CDD\|369327
NZ_CP024880.1\|WP_042895102.1\|1827471_1828413_+\|beta-aspartyl-peptidase	unknown	unknown	gnl\|CDD\|182319
NZ_CP024880.1\|WP_015704827.1\|1807910_1809287_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343

Protein	Function_ID	Function_description	E-value
NZ_CP024880.1\|WP_015367567.1\|1812230_1813823_+\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP024880.1\|WP_047036390.1\|1806713_1807754_+\|aldo/keto-reductase	gnl\|CDD\|381317	cd19091, AKR_PsAKR, Polaromonas Sp. aldo-keto reductase and similar proteins. The prototype of this family is an uncharacterized aldo-keto reductase from Polaromonas sp.	0
NZ_CP024880.1\|WP_015367574.1\|1805029_1805497_+\|manganese-binding-transcriptional-regulator-MntR	gnl\|CDD\|182927	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR.	4.05373e-90
NZ_CP024880.1\|WP_048230725.1\|1816771_1818073_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.90692e-74
NZ_CP024880.1\|WP_047054316.1\|1811268_1812051_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	1.64834e-72
NZ_CP024880.1\|WP_015367575.1\|1804717_1804843_-\|manganase-accumulation-protein-MntS	gnl\|CDD\|380222	NF033226, small_MntS, manganase accumulation protein MntS. Members of this family are MntS, a small protein of about 42 amino acids that seems to play assist bacteria in accumulating manganese when iron is limiting. It may function as a manganese chaperone, or may inhibit manganese efflux transporters.	8.63856e-23
NZ_CP024880.1\|WP_020079297.1\|1818369_1819443_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.79663e-60
NZ_CP024880.1\|WP_020079300.1\|1809347_1810064_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.7643e-63
NZ_CP024880.1\|WP_015704835.1\|1825301_1826057_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	0
NZ_CP024880.1\|WP_048230724.1\|1814392_1816756_-\|glycoside-hydrolase-family-31-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NZ_CP024880.1\|WP_015367569.1\|1810155_1811070_-\|L,D-transpeptidase	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	0
NZ_CP024880.1\|WP_042895107.1\|1824246_1825146_-\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	1.89076e-138
NZ_CP024880.1\|WP_015367576.1\|1802871_1804449_-\|phosphoethanolamine-transferase	gnl\|CDD\|225105	COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only].	1.29602e-111
NZ_CP024880.1\|WP_045411194.1\|1820844_1821660_-\|HAD-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	4.20487e-67
NZ_CP024880.1\|WP_015367558.1\|1826056_1827292_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP024880.1\|WP_100278900.1\|1805493_1806606_+\|anion-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	4.13192e-91
NZ_CP024880.1\|WP_042895110.1\|1821810_1824243_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
NZ_CP024880.1\|WP_015704832.1\|1819439_1820705_-\|DUF1479-domain-containing-protein	gnl\|CDD\|369327	pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.	0
NZ_CP024880.1\|WP_042895102.1\|1827471_1828413_+\|beta-aspartyl-peptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0
NZ_CP024880.1\|WP_015704827.1\|1807910_1809287_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.47116e-157

>NZ_CP024880.1|WP_015367567.1|1812230_1813823_+|ABC-F-family-ATPase
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIADLQAFVSRFSANASKSRQATSRARQIDKIKLDEVKASSRQNPFIRFEQDKKLFRNALEVEALAKGFDNGPLFKGVNLLLEVGEKLAVLGTNGVGKSTMLKTLVGELEADNGTVKWSENARIGYYAQDHAEDFENDLTVFDWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVLEITPERVIDFSGNYEDYLRSKGIE
>NZ_CP024880.1|WP_047054316.1|1811268_1812051_-|tyrosine-protein-phosphatase
MTTRTSHPAFISLQGGINFRDLGGQRAADGRRVRSGKLLRSGSLHNMTPEDLNHLSAIPLSRVLDYRDPTEVNRSPDRLNSEAFYLNAPANPLSSSVNAKVTEFNAATLNTMDGEQFMLQLYRQLPFNNAAYRQLTQWLMEPFDGALLQHCAVGKDRTGVGCALTLFALGCDSNTVMEEYLLTQGMLAQVEGFLLDTFGEGLNEHGRKNLAAIMTVQESYLATALSSIEQHYGHVDRWLEQEYRLTPQAREALQSRLLED
>NZ_CP024880.1|WP_015367569.1|1810155_1811070_-|L,D-transpeptidase
MKLSTLLAAAFAIVGFCNTASAVTYPLPTDGSRLIGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAEGNPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYVEVHNPLSTTEAQFKGGEIVPISLTQAVQSVTSQPDVDQSVMDQAIQNRSGMPVRLN
>NZ_CP024880.1|WP_020079300.1|1809347_1810064_+|GntR-family-transcriptional-regulator
MTAKYLNIAREIKKRIISQQYPASAPLPDQFALAAEFNTSRMTIQQAMRQLIVEGLIYTRKGQGTFVRKNFLQLSQWELPGSDYFGATKTWEHLGEVQSEVVRFELRFPSEKEQSSLLIDADAPVYDFVRLRLLNGEPISLDLTVMPVALVPGLNKSHLQSSVFRYVQETLGLKLMGSYRVVRAMKPDELDKLHLNCEPTDPVLEVEQVIYLEDGTPLEYAHCHYRYDHGGVILVNNG
>NZ_CP024880.1|WP_015704827.1|1807910_1809287_+|glycoside-hydrolase-family-1-protein
MKDKLPANFLWGNSVSSMQTEGAWNEGGKGMSVYDIREPSEFASDWKVATDSYHRFREDFDLMQDLGMNCYRFQIAWSRVCPQGDGEFNEEGIAFYHQFIDELIARGIEPMICLYHFDMPLSLAERYNGFTDRRVMDAFIRYGQKMIDCYGDKVKYWLTFNEQNLYHSPEAFLITGYLRGDKTLRELYQIQHHVMMAHVHLTDYLHQAKPQCLMGGMLAHALVYPATCKPRDILCAQQLDEFLNQNLLRAYAGEGYSPEVMHFVAREGFDDIYRPEDIALMARVKVDYLAFSYYASRTLNSDAIPPGTAVNNYMLFGNQDNPYLKATEWNWQIDPLGFRTIITRYYNDWRLPVFPIENGIGVIESWDGENQVADDYRIAYHRDHINAMKAAMFEDGAQVIGYLGWGLIDILSSQGDMRKRYGVVYVNRENHDLKDLKRVPKKSYAWLKRVIHSNGEEM
>NZ_CP024880.1|WP_047036390.1|1806713_1807754_+|aldo/keto-reductase
MRYQKLGNTGLFVSELCLGTMTFGGEEGMWGKIGQLRQAEAEQLVGSALDAGINFIDTANVYSEGRSEEITGQALKNLKIPRENVVVATKVFGETGTAGVNSRGSSRYHIMGSVKESLRRLQLDHIDLYQLHGFDPATPIEETLSALDTLVQQGHVRYIGVSNWAAWQIAKALGIAERLGLSRFASLQAYYTIAGRELERELVPMMQSEGLGLMVWSPLAGGLLSGKYRRDGQAEAGGRRLEFDFPPVNKDRAFDCIDVMQVIAEAKGVSVAQIALAWLLHQTAVTSVIIGAKRAEQLQDNIAATAIRLSEDELRQLDAVSALPREYPGWMLERQGEYRRKQLDAQ
>NZ_CP024880.1|WP_100278900.1|1805493_1806606_+|anion-transporter
MNLPFVQSLARDRFLHLLLLIAVILSLFVPFAPQRWGQAIDWHTIITLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFLAFIGQMLPLAAAMMITLLVLCWFCFPAARLNYQSSDKAPEWRPQLVWSCLAFYLIFLAALEMKQELWGLALIAVGVLLLARAVIINVDWSLLLVFMAMFIDVHLLTQLPVLQQWLNGVGQLSHGGLWLTAIGLSQFISNVPSTILLLNYVPPTMLLAWAVNVGGFGLLPGSLANLIALRMAGDRRIWWRFHLYSIPLLIWAALTGYAMLALWR
>NZ_CP024880.1|WP_015367574.1|1805029_1805497_+|manganese-binding-transcriptional-regulator-MntR
MNRRAGKPITKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIFLTPEGEKLAHESRERHQIVENFLLAIGVSPEIARRDAEGMEHHVSEETLAQFKLFTQRLHAE
>NZ_CP024880.1|WP_015367575.1|1804717_1804843_-|manganase-accumulation-protein-MntS
MNEFKRCLNVFSHSPFKVRLMLIGMLCDMINGKPQQDKPNH
>NZ_CP024880.1|WP_015367576.1|1802871_1804449_-|phosphoethanolamine-transferase
MNVTLKETLAARRLALNPWTGFYFLQSLLINLALGYEFSLLYTIAFTCVLHLLWRTFPRVQKGIVGLYSLLAAMYYPFGQAYGAPNFNTLLALHATNVEESTEILTIFPWYNYLLAVFIFALGVIAVRRKPQPPARLGKVEYLGLLFSIGIFFLQPVQNLAWGGVFKVIDSGYPAVRFVKDVIVNNNEVLDEQARMAQLANMKDSWHVLAVKPKYHLYVVVIGESARRDALGAFGGHWDNTPFASSVNGYLFKNYVAASGSTQKSLGLTLNRVVDGKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVQFLKNGDFEANKNTQDEQLLKLTEQVLSVERSQPQLIVLHIMGSHPQACDRTKGKYTTFVQSKETSCYLYSVTQTDALLAKLYGQLQNSGSSFSLTYFSDHGLAFKERGKAVQYLAHDDKYQQNFQVPFMVLSSDDKAHKMIKARRSANDFLSFFSQWTGISAQEITPRYRFISEQKAGPVYITNFQLQKVDYNHLGSDEFTVN
>NZ_CP024880.1|WP_048230724.1|1814392_1816756_-|glycoside-hydrolase-family-31-protein
MKTLKHWSLHQQLEHHVELTVDGQHTLCLYVLEENLFRVLLKRQGQLALDRTWSIAPQQDVPWEGRARDDLSGFSLPAWQMSEADDTLTIATRQLRVTVHQPLWLEWSYRDEAGEWQTLANDRPTSAYLANAHGDGVAHYLSRRKDERFYGLGEKAGDLQRNGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQRSDISYGLFYDNLSSCWLDLGNEIDNYHTAYRRWQAEAGDIDYYLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQSFHDAGLKLAANIKPCLLQDHPRYGEVAECGLFIRDSQTDAPERSSFWDDEGSHLDFTNPHTVTWWQEGVTTQLLEMGIDSTWNDNNEYEVWDGEARCYGFGREIAIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNTRMGLGMSLSGLFNVGHDVGGFSGDKPEPELFVRWVQNGVMHPRFTIHSWNDDQTVNEPWMYPEITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHQHDTQTFAECDDFMLGRDLLVASVVEPGARQRQLWLPDNQDGWYDFYNHQWFAGGQWVTLDAPLEKLPLLVRAGAGLPLSERISHVDAQKDDRRELQLFPLKGTGSTRGLLFEDDGESWGYKEGDALWLEWEMTCSANSINLKLDARGNYRPAWKALKLSLPAGEKRQLLVNGVEGTEWRL
>NZ_CP024880.1|WP_048230725.1|1816771_1818073_-|MFS-transporter
MSQGLNNDMAVSKTRRVVKNLRWWVLVLFLLGVTVNYITRNSLGIIAPELKATLGITTEQYSWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMVCATLWAVACIAHAGAGSWLHLAILRFFMGGAEAAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHASFGWQGAFMFTGVLALLWVVLWWAFYQSPEKHPNLSKSELEYIKQDNEAPPVKLPFFTALKTVSKNKRFYGIAIPAFMAEPAWAVLSFWVPLYLAKEHGMDLKQIAMFAWLPFLAADLGSVVSGYLTRLYVRWFGCTRVNSVIASSVTGAFLMLSLALVAITRDPYITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIGFNPLFIAMGFFDLIGAVFLVAFIAERRAKRA
>NZ_CP024880.1|WP_020079297.1|1818369_1819443_+|LacI-family-transcriptional-regulator
MDKKLRVAEIAARTGLSASTVSRVLAGKANTSEKARQAVLACARELGVMQGLAAGRLLLNNLLIFAPQRAFDERSDIFYYRVIQSINNALAPHEVRLRYCALEENDSDANLFLARMNETDTQAAVLLGIDDRHIHALAADLGKPCVLINCRDEGMRLPSIAPDHRLIGQCAARYLFDMGHQAVMNVMCLRRYTMELRLVGIKEAWRARNLRFTGSRDLISVANFSARETEEQVGAWLDALQGRPMPTAFLVGGDFMAAGTVSALQKRGLRVPQDVSVMSIDGFNLAAIQDVPLTAIHVPRDELGSEAVHLLQQRLLRPEAPHGSLLLHGALVVRDSVRRIRPGKSHTAVEQQGLYDD
>NZ_CP024880.1|WP_015704832.1|1819439_1820705_-|DUF1479-domain-containing-protein
MAALPTHETLPADHKAAIRQMKQALRAQIGDVQAVFDKLSARISERLDEINALKAAGQEVWPTIPFSDIAQGKVSDAQREAIKRRGCAVIKGHYPREQALAWDNAMLEYLDLNHFDDVYKGPGDSFFGSLEASRPEIYPIYWSPSQMQARQSDEMAAVQSFLNRLWRFEQDGKRWFDPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGNIDAYDPWDAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMIPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGKVLPISEQWHPLLIKALSSIPALNAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAQKVKIALEKGASPGDFPREDYECDWQARFTVADLNDHGKRALGMKI
>NZ_CP024880.1|WP_045411194.1|1820844_1821660_-|HAD-family-hydrolase
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHSIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAIAGFTTDDNNHDGALKVIQAVLDKTSPFND
>NZ_CP024880.1|WP_042895110.1|1821810_1824243_-|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRDELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPSTLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>NZ_CP024880.1|WP_042895107.1|1824246_1825146_-|glycyl-radical-enzyme-activating-protein
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRTLDGLIIHRQNVNDSHIAALRHCCPTTALTVCGEEKSVTEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>NZ_CP024880.1|WP_015704835.1|1825301_1826057_-|molybdopterin-synthase-adenylyltransferase-MoeB
MAVELSDEEMLRYNRQIVLRGFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATIGQPKVDSARDALARINPHVRLVTIDAMLDDAALATQIADHHLVLDCTDNVAVRNQLNAGCFQHKTPLISGAAIRMEGQISVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLVGTIGSLQAMEAIKLLTGYGTPARGKIVMYDAMTCQFREMKLMRHPQCEVCGSR
>NZ_CP024880.1|WP_015367558.1|1826056_1827292_-|molybdopterin-molybdotransferase-MoeA
MDFTAGLMPLDTALTQMLDRISPLQATETLPLLQAFSRVTAHDVVSPLDVPGFDNSAMDGYAVRLADLTDGAALPVAGKAFAGQPFHDAWPAGTCIRIMTGAPVPEGCDAVVMQEETEQTDAGVRFIAPVKAGQNIRRRGEDIANGAVVFPAGTRLTVAELPVLASLGIADVEVVRKVRVAVFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIPDDPAKLRDAFIAADQQADVVISSGGVSVGEADYTKTILEELGEIGFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNRGQTQPMRLRVRAASRLKKSPGRLDFQRGVLQRNPEGELVVSTTGHQGSHIFSSFSLGNCFIVLERERGNVEAGEWVEVEPFNHLFGGL
>NZ_CP024880.1|WP_042895102.1|1827471_1828413_+|beta-aspartyl-peptidase
MGKAVIAIHGGAGAISRAQMTQAREREYVAALSAIVDSGQKMLAAGASALDAVTEAVRLLEECPLFNAGIGSVFTHDQTHELDACVMDGYSLQAGAVAGVKHLRNPVLAARLVLEESPHVLLIGEGAEKFAASRGMALVENELFSTTERLLQLQQAKEGGEIILDHHAAPLDERHKMGTVGAVALDLAGNLAAATSTGGMTNKLPGRVGDSPVPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYGNLSLFEACERVVQEKLPALGGSGGLIAIDREGNVVLPFNCEGMYRAWCYAGDTPTIGIYRE

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Crispr_ID: NZ_CP024880_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024880_3

4425161-4425275

Orphan

Consensus_repeat	Method
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024880_3

>merge|NZ_CP024880|3|4425161-4425275|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGCCATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATCGTTGGGTAGCCCGGATAAGGCGTAGCCGC

>NZ_CP024880|3|3|4425161-4425275|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATC
GTTGGGTAGCCCGGATAAGGCGTAGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024880.1\|WP_020077973.1\|4429140_4429530_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP024880.1\|WP_015703432.1\|4434801_4435380_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP024880.1\|WP_015369786.1\|4421611_4421971_+\|copper-resistance-protein	unknown	unknown	unknown
NZ_CP024880.1\|WP_045363602.1\|4424632_4425136_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP024880.1\|WP_015369781.1\|4426136_4429010_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP024880.1\|WP_015369791.1\|4416447_4416714_-\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NZ_CP024880.1\|WP_015369790.1\|4416937_4417921_+\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP024880.1\|WP_008806429.1\|4418019_4418679_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP024880.1\|WP_048231335.1\|4419205_4419934_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP024880.1\|WP_045392020.1\|4436200_4436797_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NZ_CP024880.1\|WP_004205298.1\|4435546_4435876_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NZ_CP024880.1\|WP_048231334.1\|4418843_4419155_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NZ_CP024880.1\|WP_020077972.1\|4429554_4430649_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP024880.1\|WP_020077969.1\|4433459_4434776_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP024880.1\|WP_042897738.1\|4424031_4424643_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP024880.1\|WP_045359413.1\|4425331_4426075_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NZ_CP024880.1\|WP_015369779.1\|4431071_4432274_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NZ_CP024880.1\|WP_100279097.1\|4432284_4433463_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP024880.1\|WP_100279096.1\|4422020_4424030_+\|protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|226685
NZ_CP024880.1\|WP_032712496.1\|4420053_4421487_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975

Protein	Function_ID	Function_description	E-value
NZ_CP024880.1\|WP_020077973.1\|4429140_4429530_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	7.0635e-73
NZ_CP024880.1\|WP_015703432.1\|4434801_4435380_-\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.57873e-121
NZ_CP024880.1\|WP_045363602.1\|4424632_4425136_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	7.39323e-48
NZ_CP024880.1\|WP_015369781.1\|4426136_4429010_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP024880.1\|WP_015369791.1\|4416447_4416714_-\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	2.85923e-47
NZ_CP024880.1\|WP_015369790.1\|4416937_4417921_+\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP024880.1\|WP_008806429.1\|4418019_4418679_-\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
NZ_CP024880.1\|WP_048231335.1\|4419205_4419934_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	9.80831e-58
NZ_CP024880.1\|WP_045392020.1\|4436200_4436797_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	2.3463e-121
NZ_CP024880.1\|WP_004205298.1\|4435546_4435876_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
NZ_CP024880.1\|WP_048231334.1\|4418843_4419155_-\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	1.62263e-62
NZ_CP024880.1\|WP_020077972.1\|4429554_4430649_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP024880.1\|WP_020077969.1\|4433459_4434776_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP024880.1\|WP_042897738.1\|4424031_4424643_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.71398e-54
NZ_CP024880.1\|WP_045359413.1\|4425331_4426075_-\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	4.10769e-169
NZ_CP024880.1\|WP_015369779.1\|4431071_4432274_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NZ_CP024880.1\|WP_100279097.1\|4432284_4433463_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NZ_CP024880.1\|WP_100279096.1\|4422020_4424030_+\|protein-disulfide-reductase	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	2.64969e-101
NZ_CP024880.1\|WP_032712496.1\|4420053_4421487_+\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0

>NZ_CP024880.1|WP_045363602.1|4424632_4425136_+|protein-disulfide-oxidoreductase
MASKLRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNFSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGDNAALEKWLTRKKMTLPTVNDPSGQLARQWDIQVTPTLVVISQGEVKSVTTGWTSSWGMRLRLWLASW
>NZ_CP024880.1|WP_042897738.1|4424031_4424643_+|thioredoxin-domain-containing-protein
MRAITALLLLCVSAFSFAAPAEEPQSNGNDQLAQLLFNDPNSPRTGAKEPKLTIVSFTDYNCPYCKQFDPMLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPAEDLEGLVKEQLAKARGQ
>NZ_CP024880.1|WP_100279096.1|4422020_4424030_+|protein-disulfide-reductase
MFMVFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQSESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWRTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGERFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSRGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADSGQAQESHIAIAAGSAAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSNASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLTIHIGRTPVLTLLVILAIVLLLATAWRYRWRTALRAGALAIVVAGAVAFVAQQDGQGPRRDRVNWQPLSEQAIANALAEHKRVFIDVTADWCVTCKANKYNVLLRDDIQQALSAPDVIALRGDWSRPSADISQFLTARGSAAVPFNQIYGPGLPQGQILPTLLDREQLLATLSAAKGK
>NZ_CP024880.1|WP_015369786.1|4421611_4421971_+|copper-resistance-protein
MIKRQRKAILLVLLACLVVLICTAQRMAGMHALVMNVTAASQSAQPGPDNAEAPVSPCELSAKSLMAVPPMLFEGALLAIALLLAVLAAIPPRIERIWPPRVISPPRLRVHLRLCVFRE
>NZ_CP024880.1|WP_032712496.1|4420053_4421487_+|6-phospho-beta-glucosidase
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>NZ_CP024880.1|WP_048231335.1|4419205_4419934_+|MurR/RpiR-family-transcriptional-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDQLLEQAVDIILSSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCKVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLSRKIG
>NZ_CP024880.1|WP_048231334.1|4418843_4419155_-|ASCH-domain-containing-protein
MQVNDITFFQRFQDDILAGRKTITIRDAAESHFKPGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVISEIYPAEDRFYVIEFKRL
>NZ_CP024880.1|WP_008806429.1|4418019_4418679_-|hemolysin-III-family-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>NZ_CP024880.1|WP_015369790.1|4416937_4417921_+|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPSSSARLPLTLMTLDDWALATITGPDGEKYLQGQITADVSHLTADQHLLAAHCDAKGKMWSNLRVFHRDGGFAWIERRSLREAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAGKPVVTEGVTSLLWFEHPAERFLLVTDADTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSVNSAQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLAGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>NZ_CP024880.1|WP_015369791.1|4416447_4416714_-|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKRLFIRLLENDDPDLFNWLMNHGKPADAQLQRMINLIQTRNRERGPVAI
>NZ_CP024880.1|WP_045359413.1|4425331_4426075_-|SDR-family-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNIKAATEVVNTIVESGGKATALRADISDEAQVMAMFEAIDRMGEPLMALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMSHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGGK
>NZ_CP024880.1|WP_015369781.1|4426136_4429010_-|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGSDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NZ_CP024880.1|WP_020077973.1|4429140_4429530_-|glycine-cleavage-system-protein-GcvH
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYSDGWIFKIKASDEAQVAALLDAAAYEALLEDE
>NZ_CP024880.1|WP_020077972.1|4429554_4430649_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGETAVVQIRNREMPVKVTKPGFVRNGKAIV
>NZ_CP024880.1|WP_015369779.1|4431071_4432274_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQAAPQPLDADAPPALRVSAINAASEKLLDKLGVWSEIIAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYRHHALVATIRTTEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQADAAAFNQALNIAFDNRLGLCQLESDRQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKLLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>NZ_CP024880.1|WP_100279097.1|4432284_4433463_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVLIVGGGMTGATLALAISRLTGGALPVHLIEAQDPASSRHPGFDDRAIALAAGTCQQLARIGIWQNLAKRATPIQLVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVNRSQDSVSLTLDSGETINGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVRTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFGWRLGRITHAGKRSVYPLALTTAIRSVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAEMLADAHALGEDVGNYSLLCRYQARRADDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>NZ_CP024880.1|WP_020077969.1|4433459_4434776_-|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPGKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPVVHEMRLFKSAEELEVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENACILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFTKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMITGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVITEDGNENLTASVVKKADEIEALMAAARQS
>NZ_CP024880.1|WP_015703432.1|4434801_4435380_-|YecA-family-protein
MSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGILCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRSMHSATSDSLEDDGFLFQLYMPEGDNVSVFDRADALAGWVNHFLLGLGVTQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>NZ_CP024880.1|WP_004205298.1|4435546_4435876_+|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>NZ_CP024880.1|WP_045392020.1|4436200_4436797_+|5-formyltetrahydrofolate-cyclo-ligase
MTIQPDIPLSRQQIRQQIRERRRALSAEQQQRFALQAAERMMAYPPVVLAHTVALFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSQLIFNRLKIYEPKLDVRDVLPLAELDVLITPLVAFDASGQRLGMGGGFYDRTLQNWRQYRLQPVGYAHDCQQVDTLPSEQWDVPLPAVITPGKTWRW

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Crispr_ID: NZ_CP024880_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024880_4

4623731-4623868

Orphan

Consensus_repeat	Method
CCGGAACGCCATTCCGTAGGTCGGGTAAGGCGAAGCCGCTACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024880_4

>merge|NZ_CP024880|4|4623731-4623868|CRISPRCasFinder
CCGGAACGCCATTCCGTAGGTCGGGTAAGGCGAAGCCGCTACCCGCATCCAGTTCCCCGGCGGCGCTGCGCCTGGCCGGGCTACCGGTCCTGCCCGGAACGCCATTCTGTAGGTCGGGTAAGGCGAAGCCGCTACCCG

>NZ_CP024880|4|4|4623731-4623868|CRISPRCasFinder
CCGGAACGCCATTCCGTAGGTCGGGTAAGGCGAAGCCGCTACCCG	CATCCAGTTCCCCGGCGGCGCTGCGCCTGGCCGGGCTACCGGTCCTGC
CCGGAACGCCATTCTGTAGGTCGGGTAAGGCGAAGCCGCTACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024880.1\|WP_002917724.1\|4634486_4635374_-\|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase	unknown	unknown	gnl\|CDD\|181306
NZ_CP024880.1\|WP_020077884.1\|4622697_4623681_+\|transcriptional-regulator-EbgR	unknown	unknown	gnl\|CDD\|182389
NZ_CP024880.1\|WP_015369601.1\|4617196_4618846_+\|glycerone-kinase	unknown	unknown	gnl\|CDD\|274097
NZ_CP024880.1\|WP_004144833.1\|4635385_4636387_-\|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB	unknown	unknown	gnl\|CDD\|237961
NZ_CP024880.1\|WP_042897872.1\|4622157_4622490_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP024880.1\|WP_015703555.1\|4630725_4631784_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024880.1\|WP_009485171.1\|4627615_4629049_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NZ_CP024880.1\|WP_032712558.1\|4627071_4627521_+\|beta-galactosidase-subunit-beta	unknown	unknown	gnl\|CDD\|182302
NZ_CP024880.1\|WP_007372179.1\|4615060_4615693_+\|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL	unknown	unknown	gnl\|CDD\|182192
NZ_CP024880.1\|WP_015369591.1\|4634193_4634490_-\|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase	unknown	unknown	gnl\|CDD\|182494
NZ_CP024880.1\|WP_048231375.1\|4623982_4627075_+\|beta-galactosidase-subunit-alpha	unknown	unknown	gnl\|CDD\|236673
NZ_CP024880.1\|WP_015369594.1\|4629278_4630712_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NZ_CP024880.1\|WP_020077888.1\|4618949_4619723_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|225250
NZ_CP024880.1\|WP_100279102.1\|4631801_4634153_+\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|236653
NZ_CP024880.1\|WP_020077889.1\|4613979_4615050_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|183150
NZ_CP024880.1\|WP_015369602.1\|4615703_4617122_+\|dihydroxyacetone-kinase-subunit-DhaM	unknown	unknown	gnl\|CDD\|183108
NZ_CP024880.1\|WP_015369590.1\|4636388_4637387_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|184998
NZ_CP024880.1\|WP_007372182.1\|4612325_4613423_-\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_CP024880.1\|WP_020077886.1\|4620735_4622115_+\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175
NZ_CP024880.1\|WP_020077887.1\|4619953_4620472_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609

Protein	Function_ID	Function_description	E-value
NZ_CP024880.1\|WP_002917724.1\|4634486_4635374_-\|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase	gnl\|CDD\|181306	PRK08227, PRK08227, 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase.	0
NZ_CP024880.1\|WP_020077884.1\|4622697_4623681_+\|transcriptional-regulator-EbgR	gnl\|CDD\|182389	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional.	0
NZ_CP024880.1\|WP_015369601.1\|4617196_4618846_+\|glycerone-kinase	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NZ_CP024880.1\|WP_004144833.1\|4635385_4636387_-\|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB	gnl\|CDD\|237961	PRK15408, PRK15408, autoinducer 2 ABC transporter substrate-binding protein LsrB.	0
NZ_CP024880.1\|WP_042897872.1\|4622157_4622490_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	6.59492e-47
NZ_CP024880.1\|WP_100279102.1\|4631801_4634153_+\|alpha-glucosidase	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	0
NZ_CP024880.1\|WP_009485171.1\|4627615_4629049_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	1.81959e-40
NZ_CP024880.1\|WP_032712558.1\|4627071_4627521_+\|beta-galactosidase-subunit-beta	gnl\|CDD\|182302	PRK10202, ebgC, beta-galactosidase subunit beta.	1.94063e-87
NZ_CP024880.1\|WP_007372179.1\|4615060_4615693_+\|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL	gnl\|CDD\|182192	PRK10005, PRK10005, dihydroxyacetone kinase ADP-binding subunit DhaL.	3.34409e-151
NZ_CP024880.1\|WP_015369591.1\|4634193_4634490_-\|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase	gnl\|CDD\|182494	PRK10486, PRK10486, (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase.	3.06054e-60
NZ_CP024880.1\|WP_048231375.1\|4623982_4627075_+\|beta-galactosidase-subunit-alpha	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NZ_CP024880.1\|WP_015369594.1\|4629278_4630712_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	3.63323e-45
NZ_CP024880.1\|WP_020077888.1\|4618949_4619723_-\|siderophore-interacting-protein	gnl\|CDD\|225250	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism].	3.83494e-73
NZ_CP024880.1\|WP_020077889.1\|4613979_4615050_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|183150	PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP024880.1\|WP_015369602.1\|4615703_4617122_+\|dihydroxyacetone-kinase-subunit-DhaM	gnl\|CDD\|183108	PRK11377, PRK11377, dihydroxyacetone kinase subunit M; Provisional.	0
NZ_CP024880.1\|WP_015369590.1\|4636388_4637387_-\|ABC-transporter-permease	gnl\|CDD\|184998	PRK15038, PRK15038, autoinducer 2 ABC transporter permease LsrD.	4.5012e-147
NZ_CP024880.1\|WP_007372182.1\|4612325_4613423_-\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_CP024880.1\|WP_020077886.1\|4620735_4622115_+\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
NZ_CP024880.1\|WP_020077887.1\|4619953_4620472_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	9.85192e-24

>NZ_CP024880.1|WP_020077884.1|4622697_4623681_+|transcriptional-regulator-EbgR
MATLKDIATEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKSSSARKTQVLPVGHHHILALYSYQQELEINDPYYLAIRHGIETQCEKLAIELTNCYLNNTLPELKKVTGVLIIGQPTRELRETASALTDNICFIDFHEAGSPYDAVDIDLVRIAKEVVDFFIQQGASRIGFIGGQDQPGKADIREVAFVEYGQLKGVVSADDIWRGGFSSSSGYELAKQMLVQAEFPRALFVASDSIAIGVLRAIHERGLAIPEDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLIEKARDGRALPLNVFVPSVLKLRGTTR
>NZ_CP024880.1|WP_042897872.1|4622157_4622490_-|tRNA-binding-protein
MDTVAYADFAKLEMRVGKIVEVKRHDNADKLYIARIDVGDRTLQTVTSLVPYYSEEELLGKTVVVLCNLAKAKMRGETSECMLLCAETEDESESVLLTPERVMPAGVRIV
>NZ_CP024880.1|WP_020077886.1|4620735_4622115_+|putrescine-aminotransferase
MNRLPSSASALACSAHALNLIEKQSLSHDEMKALNQEVREYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVENQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFVATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGDINAMRSILSECKKTGDDVAAVILEPIQGEGGVILPPAGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLSQNLPAQAEQKGDLLLDGFRQLAREYPDLVNEVRGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRVEPPLTLTLEQCEQVLKAARKALAALRISVEET
>NZ_CP024880.1|WP_020077887.1|4619953_4620472_+|PadR-family-transcriptional-regulator
MRHHHEEGHGEQGRRGGGRRQRFFGHGELRLVILDILSRNASHGYELIKEIEALTQGNYSPSPGVIYPTLDLLQDQGLISVEEENGRKKIAITEEGRRLCAESGEQLSQIQTRLQERMIGCELRKNPQMKRALENFKAVLDLKVNQQSISDAQLKQIIGVIDRAAMEISQLD
>NZ_CP024880.1|WP_020077888.1|4618949_4619723_-|siderophore-interacting-protein
MTIINQTKYPQRVRNELRFRELTVLRVERIGQAFQRIVLGGEALDGFVSQGFDDHTKLFFPQAGSVFTPPEVTDEGINWGEGVRPATRDYTPLYDAERHELAYDFYIHDGGIASRWALEANVGDKLVIGGPRGSLVVPEDYAWQLYVCDESGMPALRRRLLGLRQLPVTPQVTAIVTIADASYKDYLADLDGFNIEWVVGHNPAFVAERLAQVKVPSEDYFIWLTGEGGVVKSLLARFEEPSIDQQLVRSQAYWHSK
>NZ_CP024880.1|WP_015369601.1|4617196_4618846_+|glycerone-kinase
MSQFFFNQRASLVNDVIEGTIIASPWNNLARLESDPAIRVVVRRDLNKNNVAVISGGGSGHEPAHVGFIGKGMLTAAVCGDLFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKQPRGIAGTILVHKVAGYFAERGFNLATVLREAQYAANHTASIGVALASCHLPQEAESAPRHQPGHAELGMGIHGEPGASTIATHNSAEIMQIMVEKLTAVLPETGRLAVMLNNLGGVSVAEMAILTRELANTPLHARVDWLIGPASLVTALDMKGFSLTTIVLEESIEKALLSDVETASWQKPVQPRAVNIMPSALASARVSFTPSANPQVGDYVAQVTSTLSGLETHLNALDAKVGDGDTGSTFAAGAREIAALLQRQQLPLNDLPTLFALIGERLTVVMGGSSGVLMSIFFTAAGQKLEQGASMAEALNAGLGQMKFYGGADEGDRTMIDALQPALAALLAEPDNLQAAFAAAQAGADRTCQSSKAGAGRASYLNSESLLGNMDPGAHAVAMVFKALAER
>NZ_CP024880.1|WP_015369602.1|4615703_4617122_+|dihydroxyacetone-kinase-subunit-DhaM
MVNLVIVSHSARLGEGVGELARQMLMNDGCKLAIAAGIDDPDNPIGTDPIKVMEAIESVADTDHVLVMMDIGSALLSAETALDLLDPAMAAKVRLCAAPLVEGTLAATVSAASGAGIDKVIADAMNALEAKRVQLGLPSHTPDAAAPTLADDGDAKSVSVIINNHNGLHVRPASKLVAALAGFNADLVLEKNGKCVTPDSLNQIALLQVRRHDKLRLLARGPDADAALAAFQALAADNFGESPEAQPTAEPAIPARVEGAALLYPLAPIQPALPAAADVAREQQRLRQAIDQTLADLNALTELAENKFNADIAAIFAGHHTLLDDEDLFDAANDRLLTEQCSAEWAWHQVLMELSQQYRQLDDAYLQARYIDVDDILQRTLRHLQGIKETLPFASEPTIIIADNIYPSTVLQLDASQVTGLCLRDGSEQAHGAIIARAAGIAWLCQQGEALNDIQPGEAITLDMRQQRLIRR
>NZ_CP024880.1|WP_007372179.1|4615060_4615693_+|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL
MSLNRTQIVDWLYRCGDIFTKQSDFLTGLDKEIGDADHGLNMHRGFSKVVEKLPSIADKDIGFILKNTGMTLLSNVGGASGPLFGTFFIRAAQVTQAHQSLTLDELYQMIREGADGVVNRGKAEPGDKTMCDVWLPVVESLRHSSEQHLSIPAALDAACEVAERAAHATITMQARKGRASYLGERSIGHQDPGATSVLFMVQMLAAAAKE
>NZ_CP024880.1|WP_020077889.1|4613979_4615050_+|dihydroxyacetone-kinase-subunit-DhaK
MKKLINRVEDVLSEQLIGLAKAHPELTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKMFECAMQIDGGEGVLLIIKNYTGDILNFETATELLHESGVKVTTVVVDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLEACAELGRRLNNLGHSIGIALGACTVPAAGQPSFTLKDDEMEFGVGIHGEPGIDRRRFSSLDQTVDEMFDTLLENGAYSRTLRQWDNVKGAWQEVKQSKTALQNGDRVIALVNNLGATPLSELYGVYNRLAQRCEASGIVIERNLIGSYCTSLDMAGFSITLLKADDDTLALWDAPVHTPALNWGK
>NZ_CP024880.1|WP_007372182.1|4612325_4613423_-|glycerol-dehydrogenase
MLKVIQSPAKYLQGPDAAMLFGEYAKNLADSFFVIADDFVMKLAGDKVLNGLHSHNISCHAERFNGECSHAEINRLIAILKQHGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTIASTDAPTSALSVIYTEAGEFEEYLIYPKNPDMVVMDTAIIAKAPVRLLVAGMGDALSTWFEAKACFDARATSMAGGQSTAAALSLARLCYDTLLAEGEKARLAAQAGVVTDALERIVEANTYLSGIGFESSGLAGAHAIHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPLEEIETVMGFCEKVGLPITLAQMGVKEGIESKIHAVAKATCAEGETIHNMPFPVTADSVYAAILTADLLGQQWLAR
>NZ_CP024880.1|WP_048231375.1|4623982_4627075_+|beta-galactosidase-subunit-alpha
MNRWENLQLTHENRLPPRAYFFSYDSLAQARTFARETSSRFLSLSGQWNFRFFTNPLLVPESFTSCYQNEWGPITVPGMWQMEGHGQLQYTDEGFPFPIDVPYVPTDNPTGAYQRLFTLGDGWQGKQTIIKFDGVETYFEVYVNGQYIGFSKGSRLTAEFDISAAVKTGDNLLCVRVMQWADSTYIEDQDMWWSAGIFRDVYLVGKNPLHVQDFTVRTDFNDDYIDATLSCQLTLENLAPQTAAATLEYTLFDGEKALYSGNVGQLQVSQQLNTGFTIDVNAPQQWSAESPYLYHLVLTLKNAAGEVLEIIPQRVGFRDIKVRDGLFYINNRYVMLHGVNRHDNDHLKGRAVGMDRVEKDLLLMKQHNINSVRTAHYPNDPRFYEMCDIYGLFVMAETDVESHGFANVGNLSAITDDPAWEHIYVERIVRHVHAQKNHPSIVIWSLGNESGYGCNIRAMYHATKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEHPHEKPRIICEYAHAMGNGPGGLTEYQNVFYQHDCIQGHYVWEWCDHGIQASDENGAVWYKFGGDYGDYPNNYNFCLDGLIFSDQTPGPGLREYKQVIAPVKVQARDICRGELRVENKLWFSTLDDYTLRVEVRAEGETLSSQLLKVQDLAPNSGRDLQIALPQLDEREAFVNIMVTKDSRTPYSEANHDIAVYQFPLKARTAARTPLLNASATPLQIADERLSYTISSHNFRVVFSKVSGKLSEWQVNGVDQVTREPKINFFKPMIDNHKQEYEGLWQPAHLQIMQEHLREFSAEIEGETVVITTRSVIAPPVFDFGMRCTYRWQITPQGHINVELAGERYGDYPHIVPCIGFMLGINGEFDQVNYYGRGPGENYADSQQSNIIDIWHTTVDDMFVNYPFPQNNGNRQHVRWASFSDRHGSGLLVVPRNPLNVSAWHFTAENLHAAQHCNELQRSDDITLNIDAQLLGLGSNSWGSEVLDSWRVWLNTFNYGFTLLPLEGGCGTSQVLANHSFGAGFFSPVAHSEAEK
>NZ_CP024880.1|WP_032712558.1|4627071_4627521_+|beta-galactosidase-subunit-beta
MRILDNLEQFTQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDSTTDALFVGNRRYFEVHYYLQGQQKIEFAAKENLQTVACYRDETDREYLKGIGETVKVHEGQMVICDIDEAYRFICDAPVKKVVLRVTVEDGYFLNK
>NZ_CP024880.1|WP_009485171.1|4627615_4629049_+|amino-acid-permease
MSESVRAKIGKFALLSMAFTAVFNVRNIVNNNIELGLSSAPIFLFATIVYFIPFVFIIAEFVSANKHSESGMYAWLKQPLGTRAAYLGSFLYWFVNLFFFLSLLPNVVAYASYAITGYAIPFSPMVTSLISIVLFAMATHISTKGATWLGKISECVAYGVFALFAIYVVGALTALGSGHVPAQPITLAAMEPTINWATLGIMCWIFQAAGGAETVAAYLNDTKGGQKSFIKVIITAGVLIGGMYALGSLLVNVFVARENLTYAGGMVEIFTGLGAYFHISEALMGRFVGIILFIAIFGSMMMWTAAPVKIHFSEIPKGIYGQKTTELNAHGVPVRAAWWQFLFVFLMLIVNGFGSASVQQMMNTAINLTAGTAMLPPLFIMAAYFVFRWKHDDTPRDFRMGSRKVGMSVVSMLIVIFVVSMTASAFPPGVDLVNAFFINVFMTAVFSGLAWWWITRFEKKQQRLRAAAPVNAAAAGK
>NZ_CP024880.1|WP_015369594.1|4629278_4630712_+|amino-acid-permease
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATLFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYILTPFATTVLSMALFAFSTWISTNGAKMLGPITSVTSSLMLLLTLSYILLAGTALVGGVQPADPITVEAMIPNFNWAFLGITTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSISSVLINVFVSSKELKFTGGSVQVFHGLAAYFGLPEILMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPSGIFGKKTVELNENGVPARAAWIQYLIVIPLMIIPTLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRRKLDHLPRDFRMGSRTTGIVVVSMLIVIFAIGFVASTFPTGGNILTIIFYNVGGIVIFLGFAWWKYSRYVKGLTQEQQQIEAAPASHTS
>NZ_CP024880.1|WP_015703555.1|4630725_4631784_+|hypothetical-protein
MKTNSYLYGALVALAFCAPAAAAETVHPAEHDDTKTPELTTTSYRFYGELGVGGYMDLEGEDKHKYSDGTYIEGGLEVKNGHWFGLIYGEAWTVQADSQGNAWTPGHSWGGVEGGLNRLYGGYKTDNNTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMYALKVQNRSGDFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMINGYVQYDIVKDVTWMNGLEVTDGTGQLFLTGVLSPNLAFRAWHHTGRAKGLDVPGSETGFMASAMYEALSGLYFSTAYSYAKHRPDHAADETTAFMQFGIWYEYGGGRFATAADSRFYTSNTSGDPSDKIFLMQYFYW
>NZ_CP024880.1|WP_100279102.1|4631801_4634153_+|alpha-glucosidase
MNLTTTLTPLACALMLSFSAHAVTAQAFKNVIDRSGAPQYMQDFDADDHQRFNPFFDLGAWHGHLLPDSPATMGGFPGPALLTEEYINFMATNFDRLTVYQNGKKVDFTLQAWSLPGALKQTLTAPGVKVEMTLRFASAHTSLLETKITSNTPLKLVWDGELLEKLAAKEGKALSDKTIDEAFPDYQRRLSATPDGLTVSFGKVRAASDLMTSGESQYQIHRSLVTETRIDGHRFTSSAEIRGSTTLYTTYSHLLTAEQARREKAQIRDILARPAYYLTASEQRWDGYLQKGLSNPDATAEQTRVAVKAIETLNGNWRAPGGAVHYHTVTPSVTGRWFSGNQTWPWDTWKQAYAMAHFNPDIAKENIRAVFSWQIKANDKVRPQDAGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTKDKAWLEEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTADGAMLFTVKKGQTEQTLSGLSAYEQVTAKGDYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRDRDGNLLGYSLLQESVDQASYMYSDNHYLAQMATILGKAEEAKRYQALATKLADYINTCMFDPQTRFYYDIRIEEQPLANGCAGKPIVERGKGPEGWSPLFNGAATQQHADDVVSVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGHRDEALKLADAFFQHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNEFFRKQ
>NZ_CP024880.1|WP_015369591.1|4634193_4634490_-|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase
MNVTLVEINIKPERVDEFLEVFRANHEGALREPGNLRFDVLQDPEVKTRFFIYEAYKDDEAVLAHKKTPHYLACVEKLEEMMSQPRQKRSFIGLLPQM
>NZ_CP024880.1|WP_002917724.1|4634486_4635374_-|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase
MADLDDIKEGKDFGIDRPQQNTLYTLKGCGSLDWGMQSRLARIFNPHSNRTVMLAFDHGYFQGPTTGLERIDLSIAPLFADTDVLMCTRGVLRSQVPAATNKPVVLRASGGNSILSELSNECVAVAMEDALRLNVCAVAAQVYIGSEYEHQSINNIIKLVDAGNRYGMPVLAVTGVGKEMTRDARYFSLASRIAAEMGAQFVKTYFVEEGFEKVTASCPVPIVIAGGKKLPEHEALEMCWRAIDQGASGVDMGRNIFQSSAPRAMLKAVKKVVHENLNAREAYQFWQEEKQGELK
>NZ_CP024880.1|WP_004144833.1|4635385_4636387_-|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB
MKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSIYINQGTPQQLGGLLVEMAEKQVSKPAAKVAFFYSSPTVTDQNQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRQGVAIVGFSTPNVMRPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGDLNVGDSVEVKDIGSLKVEPNSVQGYQYEAKGNGIVLLPERVVFSKENINNYDF
>NZ_CP024880.1|WP_015369590.1|4636388_4637387_-|ABC-transporter-permease
MKLKLNWESALLALLIAEILLFGALNPRMLDINMLLFSTSDFICIGIVALPLTLVIISGGIDISLGSTIGLCAIALGVMTQAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTLAGLPLPLVLFAIITFFFWLLAHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDLGRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRATWRRLFSHKTIGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024880_2	2.1\|1813863\|25\|NZ_CP024880\|CRISPRCasFinder	1813863-1813887	25	NZ_CP024880.1	4898045-4898069	1	0.96
NZ_CP024880_1	1.1\|1162655\|33\|NZ_CP024880\|CRISPRCasFinder	1162655-1162687	33	NZ_CP024880.1	1953369-1953401	2	0.939
NZ_CP024880_1	1.1\|1162655\|33\|NZ_CP024880\|CRISPRCasFinder	1162655-1162687	33	NZ_CP024880.1	3250783-3250815	2	0.939

1. spacer 2.1|1813863|25|NZ_CP024880|CRISPRCasFinder matches to position: 4898045-4898069, mismatch: 1, identity: 0.96

ggctacccgcggtgccgttttttgt	CRISPR spacer
ggctacccgcggtaccgttttttgt	Protospacer
*************.***********

2. spacer 1.1|1162655|33|NZ_CP024880|CRISPRCasFinder matches to position: 1953369-1953401, mismatch: 2, identity: 0.939

cggtggcgctagtgcttaccggggctacagcgc	CRISPR spacer
cggtggcgctcttgcttaccggggctacagcgc	Protospacer
**********  *********************

3. spacer 1.1|1162655|33|NZ_CP024880|CRISPRCasFinder matches to position: 3250783-3250815, mismatch: 2, identity: 0.939

cggtggcgctagtgcttaccggggctacagcgc	CRISPR spacer
cggtggcgctggcgcttaccggggctacagcgc	Protospacer
**********.*.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024880_2	2.1\|1813863\|25\|NZ_CP024880\|CRISPRCasFinder	1813863-1813887	25	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323589-323613	2	0.92
NZ_CP024880_2	2.1\|1813863\|25\|NZ_CP024880\|CRISPRCasFinder	1813863-1813887	25	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	324019-324043	2	0.92
NZ_CP024880_1	1.1\|1162655\|33\|NZ_CP024880\|CRISPRCasFinder	1162655-1162687	33	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	99081-99113	3	0.909
NZ_CP024880_2	2.1\|1813863\|25\|NZ_CP024880\|CRISPRCasFinder	1813863-1813887	25	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447689-447713	3	0.88
NZ_CP024880_1	1.1\|1162655\|33\|NZ_CP024880\|CRISPRCasFinder	1162655-1162687	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323506-323538	4	0.879
NZ_CP024880_2	2.1\|1813863\|25\|NZ_CP024880\|CRISPRCasFinder	1813863-1813887	25	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447528-447552	4	0.84
NZ_CP024880_1	1.1\|1162655\|33\|NZ_CP024880\|CRISPRCasFinder	1162655-1162687	33	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	583050-583082	6	0.818

1. spacer 2.1|1813863|25|NZ_CP024880|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 2, identity: 0.92

ggctacccgcggtgccgttttttgt	CRISPR spacer
atctacccgcggtgccgttttttgt	Protospacer
. ***********************

2. spacer 2.1|1813863|25|NZ_CP024880|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 2, identity: 0.92

ggctacccgcggtgccgttttttgt	CRISPR spacer
ggctacccgcggtgccgtttttttg	Protospacer
***********************

3. spacer 1.1|1162655|33|NZ_CP024880|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 3, identity: 0.909

cggtggcgctagtgcttaccggggctacagcgc-	CRISPR spacer
cggtggcgctagcgcttaccggggctac-gcact	Protospacer
************.*************** **.*

4. spacer 2.1|1813863|25|NZ_CP024880|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 3, identity: 0.88

ggctacccgcggtgccgttttttgt	CRISPR spacer
cactactcgcggtgccgttttttgt	Protospacer
 .****.******************

5. spacer 1.1|1162655|33|NZ_CP024880|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.879

cggtggcgctagtgcttaccggggctacagcgc	CRISPR spacer
cggtggcgctaccgcttaccggggctacaacac	Protospacer
*********** .****************.*.*

6. spacer 2.1|1813863|25|NZ_CP024880|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.84

ggctacccgcggtgccgttttttgt	CRISPR spacer
cgctactcgcggtgccgtttttttg	Protospacer
 *****.****************

7. spacer 1.1|1162655|33|NZ_CP024880|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.818

cggtggcgctagtgcttaccggggctacagcgc	CRISPR spacer
cggtggcgctaacgcttaccggggctaccaacc	Protospacer
***********..*************** .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

333822 : 426238

Escherichia_phage(34.09%)

capsid,lysis,holin,head,protease,tRNA,tail,plate,terminase,portal,integrase

attL 361829:361871|attR 392876:392918

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015368967.1\|333822_334260_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_015368966.1\|334304_335246_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_032715400.1\|335277_336180_-	alpha/beta hydrolase	A0A2K9L5W3	Tupanvirus	3.6e-07	55.8
WP_015368963.1\|336429_337359_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_015368962.1\|337364_337991_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_015368961.1\|337987_338890_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_086538089.1\|338902_341953_-	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_032713191.1\|342110_342947_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_015368957.1\|343075_343288_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_045412807.1\|343332_343656_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_015368955.1\|343655_344315_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_015368954.1\|344415_344964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020077573.1\|345164_346376_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_020077574.1\|346391_347315_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_032715401.1\|347328_347820_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_015368950.1\|347816_349088_+	MFS transporter	NA	NA	NA	NA
WP_015368949.1\|349133_349448_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_015368948.1\|349444_350593_-	lactaldehyde reductase	NA	NA	NA	NA
WP_015703941.1\|350623_351448_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_042894743.1\|351529_352789_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_100278835.1\|352785_354252_-	rhamnulokinase	NA	NA	NA	NA
WP_015703944.1\|354411_354513_+	hypothetical protein	NA	NA	NA	NA
WP_015368943.1\|354563_355400_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_072255045.1\|355445_356321_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_032706783.1\|356328_357363_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_015368940.1\|357653_358274_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	1.2e-62	58.4
WP_015368939.1\|358346_359021_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_015368938.1\|359083_360457_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.4e-10	24.0
WP_015368937.1\|360453_361152_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	30.3
WP_048231474.1\|361301_361805_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
361829:361871	attL	NA	NA	NA	NA
WP_100278836.1\|361990_362971_-\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	1.6e-178	95.4
WP_032413147.1\|363040_363334_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	7.2e-34	71.1
WP_032413148.1\|363481_363754_+	hypothetical protein	Q1JS36	Enterobacteria_phage	1.1e-39	83.3
WP_032413149.1\|363923_364424_+	hypothetical protein	M1SV55	Escherichia_phage	5.3e-85	91.0
WP_100278837.1\|364487_364712_+	DUF2732 family protein	Q7Y4C2	Escherichia_virus	1.2e-23	79.7
WP_045367651.1\|364711_365008_+	hypothetical protein	M1RZ07	Escherichia_phage	7.3e-26	68.5
WP_072269027.1\|365012_365237_+	hypothetical protein	A0A0F7LDG9	Escherichia_phage	8.8e-24	74.3
WP_045367658.1\|365233_365509_+	hypothetical protein	M1TAP2	Escherichia_phage	4.1e-31	74.4
WP_100278838.1\|365498_367772_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	78.7
WP_100278839.1\|368065_368536_+	SocA family protein	I6R0L8	Salmonella_phage	6.0e-14	37.4
WP_100278840.1\|368576_369149_+	DUF2975 domain-containing protein	S5M7T3	Escherichia_phage	1.0e-15	44.7
WP_100278841.1\|369212_371696_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_059304586.1\|372071_373118_-\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	6.3e-189	94.3
WP_100278842.1\|373119_374889_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	0.0e+00	97.3
WP_100278843.1\|375054_375909_+\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	7.3e-151	93.7
WP_032413160.1\|375985_377053_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	7.9e-195	97.2
WP_032413161.1\|377057_377807_+\|terminase	terminase endonuclease subunit	O80305	Escherichia_phage	2.6e-112	91.2
WP_032413162.1\|377900_378410_+\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	3.1e-88	95.3
WP_100278844.1\|378409_378613_+\|tail	phage tail protein	A0A0M3ULF4	Salmonella_phage	2.4e-28	89.6
WP_100278845.1\|378615_378912_+\|holin	holin	S4TP56	Salmonella_phage	1.4e-45	95.9
WP_032413164.1\|378898_379396_+	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	3.9e-88	93.3
WP_032413165.1\|379392_379806_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	6.2e-63	93.4
WP_047045389.1\|379913_380381_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	4.2e-84	99.4
WP_032723326.1\|380373_380823_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.4e-68	94.6
WP_100278847.1\|380891_381533_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	5.7e-108	93.4
WP_032413170.1\|381529_381877_+\|plate	baseplate assembly protein	A0A218M4K8	Erwinia_phage	2.2e-53	93.9
WP_032413171.1\|381883_382792_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	2.0e-154	96.7
WP_100278848.1\|382784_383393_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.6e-107	93.1
WP_100278849.1\|383389_384865_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.2e-108	49.0
WP_100278850.1\|384864_385482_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.0e-53	55.2
WP_100278851.1\|385613_386792_+\|tail	phage tail sheath protein	Q37844	Escherichia_phage	1.9e-213	94.9
WP_015370162.1\|386807_387326_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	9.4e-93	99.4
WP_064397113.1\|387388_387724_+\|tail	phage tail assembly protein	A0A218M4J8	Erwinia_phage	5.9e-48	91.9
WP_071647614.1\|387720_387876_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	4.8e-21	94.1
WP_100278852.1\|387868_390310_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	86.8
WP_063411191.1\|390324_390810_+\|tail	phage tail protein	O80317	Escherichia_phage	5.0e-80	94.3
WP_100278853.1\|390806_391964_+	phage late control D family protein	Q6K1G4	Salmonella_virus	1.2e-204	95.3
WP_032413178.1\|392043_392262_+	prophage transcriptional regulator OgrK	S4TNZ3	Salmonella_phage	1.4e-37	98.6
WP_045367712.1\|392297_392714_-	hypothetical protein	S4TTB4	Salmonella_phage	5.7e-32	51.5
WP_015368935.1\|393009_393906_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
392876:392918	attR	NA	NA	NA	NA
WP_015368934.1\|394109_395072_+	6-phosphofructokinase	NA	NA	NA	NA
WP_015703948.1\|395138_395624_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_048231479.1\|395716_396643_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_015368931.1\|396710_398045_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.1e-43	29.9
WP_015368930.1\|398054_398585_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_072059865.1\|398676_399645_-	cell division protein FtsN	NA	NA	NA	NA
WP_015368928.1\|399738_400767_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_015703950.1\|400916_403112_-	primosomal protein N'	NA	NA	NA	NA
WP_015368925.1\|403372_403585_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_004107547.1\|403686_404004_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_015368924.1\|404269_405430_+	cystathionine gamma-synthase	NA	NA	NA	NA
WP_048231472.1\|405432_407865_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_015368922.1\|408166_409054_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_015368920.1\|409205_410120_+	DMT family transporter	NA	NA	NA	NA
WP_045412819.1\|410157_411261_-	glycerol dehydrogenase	NA	NA	NA	NA
WP_045412822.1\|411315_411978_-	fructose-6-phosphate aldolase	M4SLG0	Cyanophage	3.5e-28	34.4
WP_048231471.1\|412183_413041_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_015368916.1\|413187_413838_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_045412825.1\|413884_416536_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_015368914.1\|416793_417945_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_047056652.1\|418058_419063_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_015368912.1\|419072_419849_+	acetylglutamate kinase	NA	NA	NA	NA
WP_015368911.1\|419950_421324_+	argininosuccinate lyase	NA	NA	NA	NA
WP_015368909.1\|421577_422495_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
WP_015368908.1\|422477_423878_-	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_015368907.1\|424074_424710_+	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_015368906.1\|424725_425085_+	YijD family membrane protein	NA	NA	NA	NA
WP_020077583.1\|425137_426238_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA

DBSCAN-SWA_2

1286104 : 1292918

Erwinia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048230646.1\|1286104_1286455_-	DUF1493 family protein	A0A218M4K1	Erwinia_phage	2.3e-10	42.4
WP_047076160.1\|1286448_1286895_-	hypothetical protein	A0A218M4J4	Erwinia_phage	1.2e-19	36.6
WP_047077084.1\|1287175_1287814_+	DNA-binding protein	NA	NA	NA	NA
WP_032712691.1\|1287922_1288237_-	DUF1493 family protein	A0A218M4K1	Erwinia_phage	9.5e-32	66.7
WP_047077085.1\|1288578_1289832_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.6e-91	45.6
WP_015368077.1\|1289842_1290946_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.7e-63	40.7
WP_100278884.1\|1291235_1292288_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.1e-113	58.7
WP_026612390.1\|1292351_1292918_-	hypothetical protein	S5MM68	Bacillus_phage	2.2e-10	38.9

DBSCAN-SWA_3

3047627 : 3052987

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032714650.1\|3047627_3048773_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.4e-120	59.9
WP_015705624.1\|3048926_3049352_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	3.0e-28	50.7
WP_042894575.1\|3049588_3049885_+	hypothetical protein	A0A222YWE2	Escherichia_phage	4.0e-40	77.9
WP_032711784.1\|3049942_3050278_+	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	2.4e-41	76.8
WP_032711785.1\|3050630_3051566_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0
WP_048231211.1\|3051613_3052987_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-53	32.3

DBSCAN-SWA_4

3111400 : 3141969

Cronobacter_phage(44.12%)

terminase,holin,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100278941.1\|3111400_3112078_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	6.3e-81	60.5
WP_100278942.1\|3112410_3113013_+	hypothetical protein	U5U717	Lactobacillus_phage	4.5e-06	34.0
WP_100278943.1\|3113241_3114507_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.9e-203	81.5
WP_100278944.1\|3114506_3114797_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.5e-10	42.4
WP_064743295.1\|3115220_3115565_+	hypothetical protein	NA	NA	NA	NA
WP_100278945.1\|3115623_3115881_-	hypothetical protein	L0ARW5	Klebsiella_phage	8.3e-18	51.8
WP_100278946.1\|3115884_3118017_-\|tail	phage tail protein	R9TMK5	Aeromonas_phage	3.9e-100	40.0
WP_100278947.1\|3118074_3120552_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	91.6
WP_100278948.1\|3120538_3120955_-	C40 family peptidase	F1C5F2	Cronobacter_phage	2.0e-69	87.5
WP_045363946.1\|3120917_3121388_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.5e-76	89.7
WP_045363943.1\|3121387_3121885_-	hypothetical protein	F1C5F0	Cronobacter_phage	5.1e-88	89.1
WP_100278949.1\|3121884_3124815_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	7.8e-144	43.8
WP_100278950.1\|3124874_3125240_-	hypothetical protein	A0A0P0IE45	Acinetobacter_phage	2.7e-14	39.1
WP_100278951.1\|3125236_3125611_-	hypothetical protein	NA	NA	NA	NA
WP_100278952.1\|3125678_3126365_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.4e-51	49.1
WP_100278953.1\|3126422_3127166_-	Ig domain-containing protein	F1C5E5	Cronobacter_phage	1.3e-74	84.8
WP_100278954.1\|3127229_3127613_-	hypothetical protein	F1C5E4	Cronobacter_phage	3.4e-39	63.8
WP_100278955.1\|3127609_3128074_-	hypothetical protein	F1C5E3	Cronobacter_phage	2.9e-29	48.7
WP_100278956.1\|3128076_3128427_-	hypothetical protein	G0ZNE2	Cronobacter_phage	3.1e-39	67.0
WP_100278957.1\|3128423_3128657_-	hypothetical protein	NA	NA	NA	NA
WP_100278958.1\|3128649_3128823_-	50S ribosomal protein L13	Q5G8X7	Enterobacteria_phage	7.6e-15	57.9
WP_100278959.1\|3128819_3129224_-	hypothetical protein	A0A1V0E5R0	Salmonella_phage	1.6e-52	74.6
WP_100278960.1\|3129284_3129569_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	7.3e-31	73.2
WP_100278961.1\|3129579_3130683_-	hypothetical protein	G0ZND9	Cronobacter_phage	2.3e-157	74.1
WP_100278962.1\|3130696_3131155_-	hypothetical protein	A0A125RNM2	Pseudomonas_phage	6.0e-59	78.6
WP_100278963.1\|3131167_3132433_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	4.3e-216	90.0
WP_100278964.1\|3132435_3133362_-\|head	phage head morphogenesis protein	A0A1V0E5Q2	Salmonella_phage	5.8e-162	92.2
WP_100278965.1\|3133321_3134671_-	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	8.9e-228	85.7
WP_100278966.1\|3134689_3136174_-	DNA-packaging protein	G0ZND4	Cronobacter_phage	1.2e-257	87.0
WP_100278967.1\|3136160_3136733_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	2.2e-71	72.1
WP_100278968.1\|3136756_3137044_+	hypothetical protein	NA	NA	NA	NA
WP_100278969.1\|3137150_3137339_-	hypothetical protein	NA	NA	NA	NA
WP_100278970.1\|3137432_3137690_-	hypothetical protein	NA	NA	NA	NA
WP_015705886.1\|3137839_3137932_+	hypothetical protein	NA	NA	NA	NA
WP_015705887.1\|3137931_3138045_+	hypothetical protein	NA	NA	NA	NA
WP_100278972.1\|3138164_3138560_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_100278973.1\|3138556_3139033_-	glycoside hydrolase family 104 protein	A5VW81	Enterobacteria_phage	2.3e-77	89.0
WP_152906376.1\|3139019_3139325_-\|holin	holin	E7C9S8	Salmonella_phage	5.2e-43	85.0
WP_100278974.1\|3139476_3139665_+	hypothetical protein	NA	NA	NA	NA
WP_100278975.1\|3139878_3140568_-	antiterminator	I6PDF8	Cronobacter_phage	1.1e-59	55.8
WP_157798448.1\|3140564_3140705_-	YlcG family protein	NA	NA	NA	NA
WP_100278976.1\|3140701_3141064_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	3.3e-52	83.2
WP_100278977.1\|3141060_3141351_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	3.4e-44	89.5
WP_100278978.1\|3141343_3141514_-	NinE family protein	K7P7K0	Enterobacteria_phage	1.3e-19	92.5
WP_100278979.1\|3141513_3141969_-	hypothetical protein	I6PD71	Cronobacter_phage	1.8e-60	67.5

DBSCAN-SWA_5

3146313 : 3162670

Enterobacteria_phage(28.57%)

integrase

attL 3148840:3148854|attR 3165130:3165144

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100278983.1\|3146313_3147048_-	DNA cytosine methyltransferase	A0A2I7QZY6	Vibrio_phage	6.0e-61	52.7
WP_100278984.1\|3147040_3147478_-	hypothetical protein	Q5G8U6	Enterobacteria_phage	8.6e-07	45.6
WP_100278985.1\|3147474_3147768_-	protein ren	M1FPD5	Enterobacteria_phage	3.4e-23	60.2
WP_100278986.1\|3147764_3148466_-	Replication protein P	A0A0M3ULE2	Salmonella_phage	2.0e-101	78.7
WP_100279138.1\|3148462_3149395_-	replication protein	A0A077KB11	Edwardsiella_phage	2.2e-55	79.5
3148840:3148854	attL	NA	NA	NA	NA
WP_063410412.1\|3149580_3150123_-	regulator	M9NZI6	Enterobacteria_phage	6.0e-82	86.7
WP_015705907.1\|3150139_3150373_-	antirepressor	A0A0P0ZDD7	Stx2-converting_phage	1.3e-17	61.0
WP_032709994.1\|3150414_3151167_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	4.5e-72	63.1
WP_063410411.1\|3151781_3152105_-	hypothetical protein	NA	NA	NA	NA
WP_015705909.1\|3152103_3152310_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	2.5e-25	76.5
WP_071647688.1\|3152314_3152629_-	hypothetical protein	NA	NA	NA	NA
WP_063410410.1\|3152763_3153048_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-43	86.2
WP_100278987.1\|3153066_3153912_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	4.5e-68	58.8
WP_063410408.1\|3153908_3154589_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	3.9e-123	91.6
WP_058674594.1\|3154585_3155014_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	81.7
WP_100278988.1\|3155010_3155667_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.9e-111	86.6
WP_047076779.1\|3155663_3156629_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	2.4e-142	68.7
WP_047076778.1\|3156625_3156844_+	hypothetical protein	NA	NA	NA	NA
WP_047076777.1\|3156840_3157530_+	hypothetical protein	M1F3E2	Salmonella_phage	1.8e-43	44.9
WP_047076775.1\|3157747_3157969_+	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	3.9e-08	46.8
WP_047076774.1\|3157971_3158313_+	hypothetical protein	I3PV00	Vibrio_phage	2.2e-21	50.9
WP_080957143.1\|3158612_3159800_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	3.5e-119	52.4
WP_015366244.1\|3159976_3160867_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_015366243.1\|3160866_3161859_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	1.6e-08	26.1
WP_032714707.1\|3161860_3162670_+	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	1.0e-13	27.8
3165130:3165144	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3987328 : 4087908

103

Salmonella_phage(25.86%)

capsid,transposase,holin,head,tRNA,tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020078168.1\|3987328_3988066_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_015370281.1\|3988196_3989528_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	1.5e-46	31.1
WP_002914084.1\|3989573_3989957_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
WP_020078167.1\|3990268_3990958_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	4.9e-57	53.0
WP_048231157.1\|3991013_3992084_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_015370277.1\|3992288_3992714_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	3.5e-13	39.0
WP_048231158.1\|3992783_3993482_+	DTW domain-containing protein	NA	NA	NA	NA
WP_047053895.1\|3993517_3996193_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_015370274.1\|3996289_3997645_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_015370273.1\|3997687_3998011_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_032708912.1\|3998013_3999312_-	MFS transporter	Q6JIH2	Burkholderia_virus	9.1e-44	30.2
WP_015703191.1\|4005182_4007756_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	3.4e-127	35.4
WP_048231237.1\|4007885_4008617_-	polyphenol oxidase	NA	NA	NA	NA
WP_015370269.1\|4008613_4009594_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_015370268.1\|4009725_4010463_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002914111.1\|4010735_4011071_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100279143.1\|4011185_4011233_+	hypothetical protein	NA	NA	NA	NA
WP_048231238.1\|4011334_4012495_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_048231239.1\|4012491_4013364_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_015703194.1\|4013432_4014554_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_015370264.1\|4014563_4015634_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.7
WP_020078162.1\|4015800_4016487_+	YfiR family protein	NA	NA	NA	NA
WP_047062001.1\|4016479_4017703_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_015370261.1\|4017715_4018195_+	OmpA family protein	NA	NA	NA	NA
WP_015703197.1\|4018200_4019571_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_048231240.1\|4019627_4020077_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|4020197_4020545_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_008806092.1\|4020584_4021352_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015703198.1\|4021383_4021932_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_015370257.1\|4021950_4022199_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_020078159.1\|4022469_4023834_-	signal recognition particle protein	NA	NA	NA	NA
WP_015703199.1\|4024000_4024792_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_026612238.1\|4024809_4026096_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_015370253.1\|4026199_4026790_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_015370252.1\|4026913_4027792_+	NAD(+) kinase	NA	NA	NA	NA
WP_045366812.1\|4027878_4029540_+	DNA repair protein RecN	NA	NA	NA	NA
WP_015703201.1\|4029687_4030026_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_015370249.1\|4030089_4030380_-	RnfH family protein	NA	NA	NA	NA
WP_026612237.1\|4030369_4030846_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_020078156.1\|4030960_4031443_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.0e-29	47.4
WP_100279016.1\|4032120_4033041_+	hypothetical protein	NA	NA	NA	NA
WP_100279017.1\|4033266_4033938_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.6e-81	60.4
WP_100279018.1\|4033930_4035196_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	5.8e-205	81.8
WP_100279019.1\|4035195_4035486_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.7e-11	43.5
WP_100279021.1\|4035953_4036706_-	hypothetical protein	A0A286S1R5	Klebsiella_phage	2.3e-47	44.5
WP_100279144.1\|4038704_4041251_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	69.8
WP_032712197.1\|4041736_4042117_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.3e-59	81.0
WP_100279022.1\|4042126_4042609_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	6.1e-62	73.8
WP_100279023.1\|4042595_4043075_-	hypothetical protein	A0A286S298	Klebsiella_phage	3.9e-61	67.5
WP_100279024.1\|4043074_4045618_-\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	4.8e-275	65.1
WP_100279025.1\|4045678_4046056_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_100279026.1\|4046119_4046383_-\|tail	phage tail protein	A0A286S1P2	Klebsiella_phage	3.9e-39	88.5
WP_100279027.1\|4046415_4046769_-\|tail	phage tail protein	A0A286S1N4	Klebsiella_phage	1.2e-51	84.6
WP_100279028.1\|4046811_4047294_-\|tail	phage tail protein	Q9MCU9	Escherichia_phage	1.3e-51	57.7
WP_100279029.1\|4047351_4047717_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	1.8e-53	80.2
WP_100279030.1\|4047713_4048253_-	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	1.8e-78	81.9
WP_100279031.1\|4048245_4048578_-\|head	phage head closure protein	K7PH08	Enterobacteria_phage	2.5e-46	83.6
WP_100279032.1\|4048579_4048777_-	hypothetical protein	K7PGR0	Enterobacteria_phage	1.1e-17	75.4
WP_100279033.1\|4048847_4049174_-\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	2.8e-26	59.3
WP_100279034.1\|4049170_4050214_-\|portal	phage portal protein	S4TNN1	Salmonella_phage	2.6e-102	80.7
WP_100279035.1\|4050210_4051566_-\|portal	phage portal protein	S4TTG7	Salmonella_phage	9.8e-251	95.6
WP_100279036.1\|4051771_4053706_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	95.0
WP_100279037.1\|4053763_4055422_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	4.0e-238	72.8
WP_100279038.1\|4055425_4055935_-\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.3e-51	68.0
WP_100279039.1\|4056116_4056485_-	HNH endonuclease	S4TTG9	Salmonella_phage	3.3e-52	81.7
WP_100279040.1\|4056477_4057071_-	hypothetical protein	S4TR53	Salmonella_phage	4.7e-80	71.6
WP_100279041.1\|4057052_4058510_-	glycosyltransferase	K7PKP3	Enterobacterial_phage	6.3e-211	71.5
WP_100279042.1\|4058981_4059407_-	hypothetical protein	NA	NA	NA	NA
WP_032722525.1\|4059662_4059908_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.1e-30	88.9
WP_100279043.1\|4059972_4060173_-	hypothetical protein	K7PHC3	Enterobacterial_phage	1.4e-17	68.3
WP_100279044.1\|4060183_4060336_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	6.0e-16	86.4
WP_100279045.1\|4060325_4060601_-	hypothetical protein	G8C7W1	Escherichia_phage	4.9e-24	64.4
WP_100279046.1\|4060603_4061233_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.4e-87	76.3
WP_100279047.1\|4061232_4061514_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	8.0e-22	51.6
WP_100279048.1\|4061500_4061887_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	1.2e-57	93.8
WP_049106554.1\|4061993_4062149_-	DUF3927 domain-containing protein	A0A0A0YRI9	Escherichia_phage	1.9e-09	70.8
WP_100279049.1\|4062145_4062568_-	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	2.2e-52	78.5
WP_100279050.1\|4062943_4063993_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.6e-166	76.1
WP_100279051.1\|4064141_4064336_-	TrmB family transcriptional regulator	Q9MC00	Enterobacteria_phage	5.0e-23	83.1
WP_100279052.1\|4064529_4065228_-	antitermination protein	NA	NA	NA	NA
WP_100279053.1\|4065249_4066308_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	9.1e-111	55.3
WP_047050083.1\|4066304_4068152_-	DNA methyltransferase	H9C171	Pectobacterium_phage	1.0e-202	52.4
WP_100279054.1\|4068144_4069035_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.8e-126	73.2
WP_100279055.1\|4069031_4069913_-	GntR family transcriptional regulator	K7PLZ7	Enterobacterial_phage	2.0e-34	54.8
WP_100279056.1\|4069909_4070089_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_100279145.1\|4070090_4070786_-	phage regulatory protein/antirepressor Ant	A0A2I7RHG4	Vibrio_phage	7.2e-48	51.4
WP_100279058.1\|4070984_4071542_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	3.6e-66	68.2
WP_075210621.1\|4071570_4071780_-	cell division protein	NA	NA	NA	NA
WP_100279059.1\|4071874_4072519_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	5.3e-37	39.2
WP_100279060.1\|4072720_4073311_+	hypothetical protein	NA	NA	NA	NA
WP_123907141.1\|4074281_4074467_+	hypothetical protein	NA	NA	NA	NA
WP_100279061.1\|4075098_4075626_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	1.8e-62	68.6
WP_100279062.1\|4075625_4075823_+	hypothetical protein	NA	NA	NA	NA
WP_100279063.1\|4075944_4076514_+	hypothetical protein	A0A2H4N7F5	Pectobacterium_phage	2.2e-18	73.3
WP_100279064.1\|4076510_4076855_+	hypothetical protein	NA	NA	NA	NA
WP_100279065.1\|4076847_4077549_+	hypothetical protein	M1F3E2	Salmonella_phage	3.3e-56	50.2
WP_100279067.1\|4078312_4078540_+	hypothetical protein	Q9G078	Enterobacteria_phage	1.3e-09	73.3
WP_100279068.1\|4078536_4079121_+	hypothetical protein	A0A1B0V865	Salmonella_phage	2.6e-14	53.4
WP_100279069.1\|4079327_4080518_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	4.9e-145	66.9
WP_001738700.1\|4081935_4082025_+	hypothetical protein	NA	NA	NA	NA
WP_020078154.1\|4082026_4082674_+	hypothetical protein	NA	NA	NA	NA
WP_100279070.1\|4082862_4086666_+	DNA-binding protein	NA	NA	NA	NA
WP_100279071.1\|4086797_4087908_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.3e-06	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024880

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection