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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024898 UNVERIFIED_ORG: Citrobacter freundii strain AR_0021 chromosome, complete genome 2 crisprs DEDDh,cas3,csa3,DinG,WYL 1 1 8 0

Results visualization

1. NZ_CP024898
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024898_1 735082-735221 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024898_2 1304388-1304499 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP024898_1 1.1|735125|54|NZ_CP024898|CRISPRCasFinder 735125-735178 54 NZ_CP024898.1 736503-736556 0 1.0

1. spacer 1.1|735125|54|NZ_CP024898|CRISPRCasFinder matches to position: 736503-736556, mismatch: 0, identity: 1.0

gccggataaggcgcttacaccgcatccggcaacggttgtgcctgatggcgctac	CRISPR spacer
gccggataaggcgcttacaccgcatccggcaacggttgtgcctgatggcgctac	Protospacer
******************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 313598-313641 7 0.841
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 MG065691 UNVERIFIED: Campylobacter phage A11a, complete genome 167174-167217 7 0.841
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 57112-57155 7 0.841
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 MG065686 UNVERIFIED: Campylobacter phage A18a, complete genome 6906-6949 7 0.841
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 21759-21802 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229385-229428 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239879-239922 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 404132-404175 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230791-230834 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211761-211804 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 51840-51883 8 0.818
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 397087-397130 9 0.795
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 14111-14154 9 0.795
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 59713-59756 9 0.795
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 40304-40347 9 0.795
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 MT230112 Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence 100-143 9 0.795
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40380-40423 10 0.773
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 386514-386557 10 0.773
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 8894-8937 10 0.773
NZ_CP024898_2 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder 1304422-1304465 44 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 17898-17941 12 0.727

1. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
cacaaaatgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
 * * * **************.**.******************.

2. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ggggcagcgccggatgcggcgtaagcgccttatccggcctacaa	Protospacer
..*.** .*************.*********************.

3. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
acgttgatgccggatgcggtgcaagcaccttatccggcctacag	Protospacer
* * .. ************.******.*****************

4. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ggggcagcgccggatgcggcgtaagcgccttatccggcctacaa	Protospacer
..*.** .*************.*********************.

5. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcaccaccgccggatgcggcgcgagcgccttatccggcctacga	Protospacer
. . ***.**************.*******************..

6. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

7. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

8. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
attttcttgccggatgcggcgtaaacgccttatccggcctacag	Protospacer
*   . .**************.**.*******************

9. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

10. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

11. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gagctggtgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
.** .. **************.**.******************.

12. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacaattgccggatgcggcgtaaacgccttatccggcctacat	Protospacer
. .  *.**************.**.****************** 

13. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
cgttgattgccggatgcggcgtaaacgccttatccggcctacat	Protospacer
 .   *.**************.**.****************** 

14. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcatcgttgccggatgcggcgcgagcgccttatccggcttaccg	Protospacer
. . *..***************.***************.*** *

15. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ttgtttatgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
  * .  **************.**.******************.

16. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
tttatgttgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
   *...**************.**.******************.

17. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.773

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ggctttttgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
..  . .**************.**.*****************.*

18. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.773

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacaagtgccggatgcggcgtaaacgccttatccggcctacgc	Protospacer
. .  * **************.**.*****************. 

19. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.773

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ccgcggttgccggatgcggcgtaaacgccttatccggcctacga	Protospacer
  *  ..**************.**.*****************..

20. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 12, identity: 0.727

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcggacttgccggatgcggcgtaaacgccttatccggccacgaa	Protospacer
. *.  .**************.**.**************   *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2754126 : 2762690 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_2 2857269 : 2865463 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_3 2938136 : 2947949 14 Escherichia_phage(30.0%) NA NA
DBSCAN-SWA_4 2992719 : 3030648 55 Salmonella_phage(28.57%) head,integrase,holin,portal,protease,capsid,terminase,tail attL 2992538:2992597|attR 3030835:3030958
DBSCAN-SWA_5 3257615 : 3310495 72 Enterobacteria_phage(36.0%) head,integrase,holin,coat,terminase,tail attL 3245733:3245747|attR 3291030:3291044
DBSCAN-SWA_6 3385289 : 3393489 9 uncultured_Caudovirales_phage(16.67%) tRNA NA
DBSCAN-SWA_7 3810706 : 3820714 10 Brazilian_cedratvirus(28.57%) tRNA NA
DBSCAN-SWA_8 4479187 : 4487317 8 Escherichia_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage