CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024898	UNVERIFIED_ORG: Citrobacter freundii strain AR_0021 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,DinG,WYL	1	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024898_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024898_1

735082-735221

Orphan

Consensus_repeat	Method
CTTATCAGGCCTACGAAACTACAGACCAGTTTAAAGCTTGTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024898_1

>merge|NZ_CP024898|1|735082-735221|CRISPRCasFinder
CTTATCAGGCCTACGAAACTACAGACCAGTTTAAAGCTTGTAGGCCGGATAAGGCGCTTACACCGCATCCGGCAACGGTTGTGCCTGATGGCGCTACCTTATCAGGCCTACGAAACTACAGACCAGTTTAAAGTTTGTAG

>NZ_CP024898|1|1|735082-735221|CRISPRCasFinder
CTTATCAGGCCTACGAAACTACAGACCAGTTTAAAGCTTGTAG	GCCGGATAAGGCGCTTACACCGCATCCGGCAACGGTTGTGCCTGATGGCGCTAC
CTTATCAGGCCTACGAAACTACAGACCAGTTTAAAGTTTGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024898.1\|WP_008786927.1\|736639_736996_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP024898.1\|WP_003826625.1\|731033_731315_+\|YjcB-family-protein	unknown	unknown	gnl\|CDD\|374240
NZ_CP024898.1\|WP_003826632.1\|726066_727416_-\|guanine/hypoxanthine-transporter-GhxP	unknown	unknown	gnl\|CDD\|225161
NZ_CP024898.1\|WP_100271646.1\|739343_740423_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP024898.1\|WP_032942105.1\|723068_723959_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP024898.1\|WP_100271643.1\|735326_736307_-\|transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP024898.1\|WP_003826610.1\|740439_741855_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193
NZ_CP024898.1\|WP_003826634.1\|724262_725909_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_CP024898.1\|WP_003031709.1\|745168_745687_+\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP024898.1\|WP_020996089.1\|743458_744457_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP024898.1\|WP_003826630.1\|728024_728483_-\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|184964
NZ_CP024898.1\|WP_003826621.1\|731381_731906_-\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_CP024898.1\|WP_061547501.1\|732157_734980_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP024898.1\|WP_008786924.1\|741919_742903_+\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NZ_CP024898.1\|WP_003826638.1\|722556_722967_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP024898.1\|WP_100271644.1\|737123_737837_-\|acid-phosphatase-AphA	unknown	unknown	gnl\|CDD\|236818
NZ_CP024898.1\|WP_003031713.1\|743082_743325_-\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NZ_CP024898.1\|WP_100271645.1\|738021_739215_-\|aromatic-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|181731
NZ_CP024898.1\|WP_003031731.1\|728569_728893_+\|superoxide-response-transcriptional-regulator-SoxS	unknown	unknown	gnl\|CDD\|182314
NZ_CP024898.1\|WP_100271640.1\|728895_730482_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279

Protein	Function_ID	Function_description	E-value
NZ_CP024898.1\|WP_008786927.1\|736639_736996_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	8.35622e-50
NZ_CP024898.1\|WP_003826625.1\|731033_731315_+\|YjcB-family-protein	gnl\|CDD\|374240	pfam15940, YjcB, Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	9.24285e-41
NZ_CP024898.1\|WP_003826632.1\|726066_727416_-\|guanine/hypoxanthine-transporter-GhxP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.76229e-144
NZ_CP024898.1\|WP_100271646.1\|739343_740423_-\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP024898.1\|WP_032942105.1\|723068_723959_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.23495e-89
NZ_CP024898.1\|WP_100271643.1\|735326_736307_-\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	6.52536e-27
NZ_CP024898.1\|WP_003826610.1\|740439_741855_-\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
NZ_CP024898.1\|WP_003826634.1\|724262_725909_-\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP024898.1\|WP_003031709.1\|745168_745687_+\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	1.13317e-122
NZ_CP024898.1\|WP_020996089.1\|743458_744457_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP024898.1\|WP_003826630.1\|728024_728483_-\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|184964	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR.	2.81792e-107
NZ_CP024898.1\|WP_003826621.1\|731381_731906_-\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.66491e-115
NZ_CP024898.1\|WP_061547501.1\|732157_734980_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP024898.1\|WP_008786924.1\|741919_742903_+\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NZ_CP024898.1\|WP_003826638.1\|722556_722967_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	2.05335e-34
NZ_CP024898.1\|WP_100271644.1\|737123_737837_-\|acid-phosphatase-AphA	gnl\|CDD\|236818	PRK11009, aphA, class B acid phosphatase.	1.31411e-170
NZ_CP024898.1\|WP_003031713.1\|743082_743325_-\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	5.56761e-23
NZ_CP024898.1\|WP_100271645.1\|738021_739215_-\|aromatic-amino-acid-transaminase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP024898.1\|WP_003031731.1\|728569_728893_+\|superoxide-response-transcriptional-regulator-SoxS	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	9.05826e-64
NZ_CP024898.1\|WP_100271640.1\|728895_730482_-\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0

>NZ_CP024898.1|WP_061547501.1|732157_734980_+|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPVIKERKGEHTKTLENLAGQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVEAPWASLNPTVHKVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVFVENTPLPAISDMSIGHAMDFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLDDIMAVPESLTGQYMSGKRKIEVPKQRVAADPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQTALNGATLAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLL
>NZ_CP024898.1|WP_003826621.1|731381_731906_-|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF
>NZ_CP024898.1|WP_003826625.1|731033_731315_+|YjcB-family-protein
MATITTGVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISSGLGLVFACWFATGLLGITLVDMSAIWKNIETVMVDVMSHTPPDWPMVLN
>NZ_CP024898.1|WP_100271640.1|728895_730482_-|EAL-domain-containing-protein
MNHSARRKMLKFLGTFMVVLFPVVLAIWFAHIRAMTETHSQLRSFAQLVLNKTELVILQADLARDMAQLYQGKMCTPAHQKSMLNIIRGRLYISELIYAQGDHFLCSTSMAPPVTYIMPTPDYKRTPDIAIYYYRDTPFFAGYRMTYMQRGNYVAVINPLSYSEVMSDDPDLSWGVYDTVTDTFFSASEAANIAQFAPLIRGEASTFQQDDRFYTIVHSEKRPIAIIVSTSDNRVSQIFYHEAVLTIPFGIICSILILLMWWRTRQEYLSPRRLLKRAIKKRQLCLHYQPIIDIKNGQCVGAEALLRWPGCKGEVMSPTEFIPLAEKEGMIERITDYVVEEVFNDLGYFLSVHPQLSISINLSASDFHSSRLIALINDKNREYSVAAQQIKVEVTERGFIDVHKMTPVIQAFRKAGYEVAFDDFGTGYSNLHNLSALNVDILKIDKSFISTLSTNSTSHLIAEHIIEMAQSLHLKTIAEGVETKEQIEWLLERGVQYCQGWYFAKALPPQEFMHWIQRSPAILTQSGQ
>NZ_CP024898.1|WP_003031731.1|728569_728893_+|superoxide-response-transcriptional-regulator-SoxS
MSHQQIIQTLIEWIDEHIDQPLNIEAVAKKSGYSKWYLQRMFRTVTRQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL
>NZ_CP024898.1|WP_003826630.1|728024_728483_-|redox-sensitive-transcriptional-activator-SoxR
MEKKLPRIKALLTPGEVAKRSGVAVSTLHFYESKGLISSMRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGDALGVLPEGHSLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDQLGEQGTGARLLEDD
>NZ_CP024898.1|WP_003826632.1|726066_727416_-|guanine/hypoxanthine-transporter-GhxP
MSTPSARTGGSLDAWFKISLRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFDTFPVIMSLIGLAVIIGLEKLKVPGGILLTIIGISVVGLIFDPAVHFSGIFAMPSLSDENGNSLIGSLDIMGALNPIVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRIVSGEWRKLNIGTVVIAIALVAFYAGGWAI
>NZ_CP024898.1|WP_003826634.1|724262_725909_-|Na+/H+-antiporter
MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVLVTVVGIGFMIYWLVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMVFTVGGATLEFFKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILESSLAAAEADPNVEIWMLFTDVVLIYVALMLVRFGWLWTMKKFSLRFLKKKPMEFGSWTTREIMIASFAGVRGAITLAGVLSIPLLLPDGSGFPARYELIFLAAGVILFSLFVGVVMLPILLQHLEVADHSQQQKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSMQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIENQ
>NZ_CP024898.1|WP_032942105.1|723068_723959_+|LysR-family-transcriptional-regulator
MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRRLLLTDTGQVVFERGLAILAEFRQLEAELSDINHLNKGVLRLGIPPMVGMLMAGPIGLFRQRYPGVELKVSEFGGLTVQQAVMNGDLDVAMTALPVEEESGLATLPLFSHPLCVLVPRSGQWTTCESISPEALAEHPLLIYNEDFALSRQLLELFSQHNVKPRIAVRSGQWDFLAAMVQAGVGIAILPEPICQRLDKQTLRWIPLESDLRWQLGMIWREGVYLSHSAQAWLKCCEGFWLPQAS
>NZ_CP024898.1|WP_003826638.1|722556_722967_-|CidA/LrgA-family-protein
MAVAISRVTPAVIHRLQIPVQVLLYAGLFVFAQYLVSWLHLPLPANLVGMVLMLALIVCRVIPLNWIRAGARWLLAEMLLFFVPAVVAVVNYTQLLLVDGWRIFAVIAISTLMVLGATAWVVDKVYRYEMRRLNRE
>NZ_CP024898.1|WP_100271643.1|735326_736307_-|transposase
MEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTLKGHNELLHWLNSHNVAPAHICMEATSTYMEDVAAHLSDAGFTVSIINPALGKAFAQSEGLRSKTDAVDARMLAEFCRQKRPAVWEAPHPVERALRALVLRHQSLTDMRTQELNRLETAREVQRPSIDAHLLWLHAEIKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYVGLKDRFSQARKFAAFAGLTPRQHESGSSVRGMSRMSKSGHVSLRRALYMPAMVAISKTEWGRAFRDRLAGNGKKGKVIIGAMMRKLAHVSYGVLKSDEPFDASRHGVITA
>NZ_CP024898.1|WP_008786927.1|736639_736996_-|MmcQ/YjbR-family-DNA-binding-protein
MTNSELLQYCMAKTGAEQSVHSDWKATQIKVEDVLFAMVKEVEERPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNTLPEDKRRILTQP
>NZ_CP024898.1|WP_100271644.1|737123_737837_-|acid-phosphatase-AphA
MRKFTLALSAVCLLFTLNQPAQALVSSPSQLNPGTNVAKLAEQAPIHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSEDYLKNPAFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDSIFFVTGRSRTKTETVSKTLSDNFHIPAGNMNPVIFAGDKPGQNTKTQWLQDKNIRMFYGDSDNDITAARDVGIRGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
>NZ_CP024898.1|WP_100271645.1|738021_739215_-|aromatic-amino-acid-transaminase
MFQKVDAYAGDPILSLMERFKEDSRSDKVNLSIGLYYNEDGIIPQLKAVAEAEARLNAKPHGASLYLPMEGLNTYRHTIAPLLFGAEHPVLQQQRVATIQTLGGSGALKVGADFLKRYFPDSGVWVSDPTWENHIAIFEGAGFEVSTYPWYDDTTNGVRFNDLLATLNTLPARSIVLLHPCCHNPTGADLTPAQWDSVIEILKARELIPFLDIAYQGFGGGMEDDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVVCEDAEAASRVLGQLKATVRRNYSSPPNFGAQVVAAVLGDDALKASWLAEVEEMRTRILAMRQELVNVLNTEIPGRNFDYLLQQRGMFSYTGLSAAQVDRLRDEFGVYLIASGRMCVAGLNHGNVQRVAKAFAAVM
>NZ_CP024898.1|WP_100271646.1|739343_740423_-|alanine-racemase
MQAATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITQPILLLEGFFDASDLPTISAQRLHTAVHNQEQLEALEAAKLAEPVTVWMKLDTGMHRLGIRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDIFNSFCEGKPGQRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWLSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKYID
>NZ_CP024898.1|WP_003826610.1|740439_741855_-|replicative-DNA-helicase
MAGNKPFNKQQTDARERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVAEDFYTRPHRHIFTEMHRLQEMGKPIDLITLAESLEVQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVRDMISVANEIAEAGFDPQGRSSEDLLDLAESRVFKIAESRANKDEGPKNITDVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELHVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>NZ_CP024898.1|WP_008786924.1|741919_742903_+|quinone-oxidoreductase
MATRIEFHKHGGPDVLKAVEFTPVDPAENEIQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSKVTHIKAGDRVVYAQSALGAYSSVHNVPADKAAILPNAISFEQAAASFLKGLTVFYLLRKTYEIQPDEPFLFHAAAGGVGMIACQWAKALGAKLIGTVGSAQKAQIALQAGAWQVINYREESIVERVKEVTGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITNHRELTEASNELFSLIASGVIKVDVAPGQTFALHDAQRAHEVLESRATQGSSLLIP
>NZ_CP024898.1|WP_003031713.1|743082_743325_-|envelope-stress-response-protein-PspG
MLELLFVIGFFIMLMVTGVSLLGVLAALVVATAVMFLGGLFALMIKLLPWLLLAVAVVWVIKAIKAPKVPQYQRNNRRFY
>NZ_CP024898.1|WP_020996089.1|743458_744457_-|tRNA-dihydrouridine(20/20a)-synthase-DusA
MLPESQSTAFPAHRFSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFAATTEDTDPVAVVRAMYPYIERELSKGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR
>NZ_CP024898.1|WP_003031709.1|745168_745687_+|zinc-uptake-transcriptional-repressor-Zur
MDKTTTQELLAQAEKLCAQRNVRLTPQRLEVLRLMSLQEGAISAYDLLDLLRETEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHSSAMFICDRCGVVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCPACVEVESCRHPGECQHDHTIQVKKKVGR

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Crispr_ID: NZ_CP024898_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024898_2

1304388-1304499

Orphan

Consensus_repeat	Method
GCGAAGCGCCATCAGGCAAAACATCACGCTATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024898_2

>merge|NZ_CP024898|2|1304388-1304499|CRISPRCasFinder
GCGAAGCGCCATCAGGCAAAACATCACGCTATAAAAGACACTGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAGGCGAAGCGCCATCAGGCAAAACATCACGCTATAA

>NZ_CP024898|2|2|1304388-1304499|CRISPRCasFinder
GCGAAGCGCCATCAGGCAAAACATCACGCTATAA	AAGACACTGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAG
GCGAAGCGCCATCAGGCAAAACATCACGCTATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024898.1\|WP_008786420.1\|1302462_1304157_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	unknown	unknown	gnl\|CDD\|183198
NZ_CP024898.1\|WP_008786427.1\|1293844_1294594_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP024898.1\|WP_032945318.1\|1311019_1312222_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP024898.1\|WP_008786414.1\|1313673_1314870_-\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|99738
NZ_CP024898.1\|WP_100271779.1\|1294693_1295710_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380506
NZ_CP024898.1\|WP_100271781.1\|1299368_1299938_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|182401
NZ_CP024898.1\|WP_100271780.1\|1296636_1298970_+\|molybdopterin-guanine-dinucleotide-containing-S/N-oxide-reductase	unknown	unknown	gnl\|CDD\|273110
NZ_CP024898.1\|WP_003827418.1\|1309838_1310843_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	unknown	unknown	gnl\|CDD\|236898
NZ_CP024898.1\|WP_100271784.1\|1308858_1309842_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182906
NZ_CP024898.1\|WP_020996062.1\|1301049_1302252_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NZ_CP024898.1\|WP_003827401.1\|1298938_1299379_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP024898.1\|WP_003827414.1\|1305142_1306750_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP024898.1\|WP_100271783.1\|1307945_1308848_+\|dipeptide-ABC-transporter-permease-DppC	unknown	unknown	gnl\|CDD\|182833
NZ_CP024898.1\|WP_008786415.1\|1312257_1313556_-\|transporter	unknown	unknown	gnl\|CDD\|273283
NZ_CP024898.1\|WP_057067483.1\|1300096_1300798_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|227858
NZ_CP024898.1\|WP_075553079.1\|1315629_1317636_+\|biofilm-formation-regulator-HmsP	unknown	unknown	gnl\|CDD\|184143
NZ_CP024898.1\|WP_003827426.1\|1315295_1315403_+\|type-I-toxin-antitoxin-system-toxin-Ldr-family-protein	unknown	unknown	gnl\|CDD\|372829
NZ_CP024898.1\|WP_003827397.1\|1295814_1296477_-\|OmpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|182507
NZ_CP024898.1\|WP_032945322.1\|1306916_1307936_+\|dipeptide-ABC-transporter-permease-DppB	unknown	unknown	gnl\|CDD\|182834
NZ_CP024898.1\|WP_100271778.1\|1292902_1293841_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571

Protein	Function_ID	Function_description	E-value
NZ_CP024898.1\|WP_008786420.1\|1302462_1304157_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	gnl\|CDD\|183198	PRK11560, PRK11560, kdo(2)-lipid A phosphoethanolamine 7''-transferase.	0
NZ_CP024898.1\|WP_008786427.1\|1293844_1294594_-\|hypothetical-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	0.00166937
NZ_CP024898.1\|WP_032945318.1\|1311019_1312222_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	4.90811e-132
NZ_CP024898.1\|WP_008786414.1\|1313673_1314870_-\|methionine-gamma-lyase	gnl\|CDD\|99738	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.	0
NZ_CP024898.1\|WP_100271779.1\|1294693_1295710_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380506	cd06283, PBP1_RegR_EndR_KdgR-like, ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.69173e-109
NZ_CP024898.1\|WP_100271781.1\|1299368_1299938_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|182401	PRK10353, PRK10353, DNA-3-methyladenine glycosylase I.	4.28412e-140
NZ_CP024898.1\|WP_100271780.1\|1296636_1298970_+\|molybdopterin-guanine-dinucleotide-containing-S/N-oxide-reductase	gnl\|CDD\|273110	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.	0
NZ_CP024898.1\|WP_003827418.1\|1309838_1310843_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	0
NZ_CP024898.1\|WP_100271784.1\|1308858_1309842_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182906	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional.	0
NZ_CP024898.1\|WP_020996062.1\|1301049_1302252_+\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.71418e-139
NZ_CP024898.1\|WP_003827401.1\|1298938_1299379_-\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	2.997e-94
NZ_CP024898.1\|WP_003827414.1\|1305142_1306750_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP024898.1\|WP_100271783.1\|1307945_1308848_+\|dipeptide-ABC-transporter-permease-DppC	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	0
NZ_CP024898.1\|WP_008786415.1\|1312257_1313556_-\|transporter	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.18463e-149
NZ_CP024898.1\|WP_057067483.1\|1300096_1300798_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|227858	COG5571, COG5571, Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion [Cell motility and secretion].	7.72959e-88
NZ_CP024898.1\|WP_075553079.1\|1315629_1317636_+\|biofilm-formation-regulator-HmsP	gnl\|CDD\|184143	PRK13561, PRK13561, putative diguanylate cyclase; Provisional.	0
NZ_CP024898.1\|WP_003827426.1\|1315295_1315403_+\|type-I-toxin-antitoxin-system-toxin-Ldr-family-protein	gnl\|CDD\|372829	pfam13940, Ldr_toxin, Toxin Ldr, type I toxin-antitoxin system. This family includes the Ldr (long direct repeat) toxins. In Escherichia coli there are four Ldr toxins, LdrA, LdrB, LdrC and LdrD. These toxins inhibit cell growth, decrease cell viability and cause nucleoid condensation. LdrD expression is inhibited by the antisense RNA RdlD, which functions as an antitoxin.	4.09369e-08
NZ_CP024898.1\|WP_003827397.1\|1295814_1296477_-\|OmpA-family-lipoprotein	gnl\|CDD\|182507	PRK10510, PRK10510, OmpA family lipoprotein.	1.98526e-133
NZ_CP024898.1\|WP_032945322.1\|1306916_1307936_+\|dipeptide-ABC-transporter-permease-DppB	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	0
NZ_CP024898.1\|WP_100271778.1\|1292902_1293841_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	4.09554e-105

>NZ_CP024898.1|WP_008786420.1|1302462_1304157_+|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase
MRYIKSMTQQKLSFLLAIYIGLFMNCAVFFRRFSGYAHEFTVWKGLSAVVELAGTVLVTFFLLRLLSLFGRRAWRVLATFVVLCSAGASYYMTFLNVVIGYGIIASVMTTDIDLSKEVVGWHFIVWLVSVSIIPLVLIWSNRCRYTLMKQIRTPGMRWRSVAVVLLAGLMVWLPIRLLSMQQRSVERATGIDLPSYGGVVANSYLPSNWLSALGLYAWAQVDESSDNKSLMNPAKKFTYVAPKNLDDTYVVFIIGETTRWDHMGIFGYERNTTPRLAQEKNLAAFRGYSCDTATKLSLRCMFVREGGAEENPQRTLKEQNVFSVLGQLGFKTDLYAMQSEMWFYSNTMAENIAYREQIGAEPRNRGKNVDDMLLITEMQQSLQNNEDGDKHLIILHTKGSHFNYTQRYTREYAQWKPECVNVDSGCSKAEMINSFDNSVTYVDHFITKVFDQLRDKKAIVFYAADHGESINEREHLHGTPRKMAPPEQFRVPMMVWMSDKYLEDPDHAKAFAHLKQEADMKVPRRHVELYDTILGCLGYTSPNGGINENNNWCRIPDANKATAQ
>NZ_CP024898.1|WP_020996062.1|1301049_1302252_+|MFS-transporter
MKTSDYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSSKLDAPVSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGVGFFLTAHSDSLIMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDSQLLSTVGLEKTFMIWGAIVLVMIVFGSTLMKDAPNQEVKTKNGVVENDYTLAQSMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHMDVATAANAVTVISIANLSGRLVLGILSDKISRIRVITIGQVVSLVGMAALLFAPLNDATFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASLFGGFYVTFCVIFALLIISLALSTTIRQPQRSVYTEAHA
>NZ_CP024898.1|WP_057067483.1|1300096_1300798_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MIIRNSSGHQRLTLVSVVVCALSINTAYGWQQEYIVDAMSGHTAERYTWDSDHQPRYNDILEERIRSTQNVAGPVVNLADETPMDATSGMSMGWNFPLSGQVTTGPVAALHYDGSTTSTYNEFGDSATSVTQNDPLWHASVSSLGWRVNSQFGDVRPWAQISYNQQFGENIWKAQSGLSRMSAAGQGGNWVDVTVGADMLLNPHMAAYAALSQAENSTNNSDYMYTMGVSAKF
>NZ_CP024898.1|WP_100271781.1|1299368_1299938_-|DNA-3-methyladenine-glycosylase-I
MQRCGWVSQDPLYIAYHDKEWGVPETDSNKLFEMICLEGQQAGLSWITVLKKRENYRHAFHHFDPEKVAAMTEEDVESLVLDAGIIRHRGKIQAIIGNARAFLTMAQNGESFSEFVWSFVDNQPQVTRAANLSDIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVTSCICYPGEQHDS
>NZ_CP024898.1|WP_003827401.1|1298938_1299379_-|N-acetyltransferase
MIRESKAEDLPSILALWMESTIHAHPFIEERYWRESESVVRDVYLPAAQTWVWEEEGELKGFASVIDDRFLGALFVAPAAIRSGIGKALVQHVQQRFSILSLEVYQKNQSAVNFYHALGFRIEDGAWQEETHHPTWIMGWQADQTP
>NZ_CP024898.1|WP_100271780.1|1296636_1298970_+|molybdopterin-guanine-dinucleotide-containing-S/N-oxide-reductase
MANSPAHYSVLTAAHWGPILVDTDGETVFSSRGALPTTHPNSLQTVVRDQVHSKTRIRFPMVRKGFLASPENPQGIRGQDEFVRVSWDDALNLIHTQHKRIRDSYGPASIFAGSYGWRSNGVLHKAATLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGNEVYQQQTSWPVVLENSEVVVLWSANPLNTLKIAWNASDEQGLAYFEALRDSGKRLICIDPMRSESVDFFGDKMEWIAPHMGTDVALMLGIAHTLVENGWHDEDFLARCTTGYDRFADYLLGKSDDVAKTAEWAAEICGIPTAKIRELAAIFHQNTTMLMAGWGMQRQQYGEQKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRRAAVLASMQGSVKGGTDAVDKIPVARIVEALENPGGFYQHNGMDRHFPDIRMLWWAGGANFTHHQDTNRLIRAWQKPELVIISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPQDEARNDFDVFAELSERWEKGGYERFTEGKSELAWLETFYNIAGQRGASQQVTLPPFAEFWQRNALIEMPENAASAQFIRFADFRCDPQAHPLKTDSGKIEIYSARIAGYGYADCGGHPMWLEPDEWFGNAEPDQLQLLSAHPAHRLHSQLNYSALREQYAVADREPITIHPQDAHARGIADGDTVRVWNQRGQVLAGAVVTAGIKPGVICIHEGAWPDLDLAANGICKNGAVNVLTKDLPSSKLGNGCAGNTALAWLEKYSGPTLALTAFDPPASP
>NZ_CP024898.1|WP_003827397.1|1295814_1296477_-|OmpA-family-lipoprotein
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAAVGGGIGYYMDVQEAKLREKMQGTGVSVTRSGDNIILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYNKTAVNVLGFTDSTGSQDLNMRLSQQRADSVASALITQGVAANRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSPIQ
>NZ_CP024898.1|WP_100271779.1|1294693_1295710_-|LacI-family-DNA-binding-transcriptional-regulator
MSKSTRATISDVAKAAKTGKTSISRYLNGEKHLLSDALLARIEQAIADLDYRPSLMARGLKHGRTRLIGLIIADITNPYSVNVLSGIEAACRDKGFTPLVCNTNNEVDQELHYLDLLRSYQVEGIVVNAVGMREEGLNRLQQSALPMVLIDRKIPDFACDMVGLDNTQAATVATEHLVEQGFEAILFLSEPLGMVNTRRERLSAFRTTLAQYPGVIAQNAEVPLTDNTQLDDTLRQFHQQHRGMRKAVISANGALTLQVARALKRIGLNWGSDIGLLGFDELEWAELAGVGITTLKQPTWQIGYTAVEQVVRRIDGGSAAIQEQVFSGELIVRGSTAR
>NZ_CP024898.1|WP_008786427.1|1293844_1294594_-|hypothetical-protein
MKRKIMVVTAAYGHDQVRAAGGQTAMLPIIAEAGADGVEIRRELLTDAELKTLSTMASAIEIFGLLACYSAPEPLFLEDGNLNPRLPELLEEAQALQALWLKVSLGHFSHTEQFDVLRQWLDNSGMELVVENDQTDCGRLQPMQRFNEACQAQNLPISLTFDMGNWLWVGDSPEQAAQNLASTVGYIHVKAAVAHRDSYRAVPPDEADPRWLALLKTLPNDVPRGIEFPLEGQDLAAVTRRYVELLREE
>NZ_CP024898.1|WP_100271778.1|1292902_1293841_-|sugar-kinase
MKNSLDVVTIGEAMAMFVATQTGELADVEQFIKRVAGAELNVATGLARLGLKVGWVSRVGNDSFGRFIVKSLEKEGIDAQGVTQDGRYATGFQLKSKVENGTDPIVEYFRKGSAASHLSIEDYHEDYFASARHLHLSGVAAALSASSYELLAHTARTMKAQGKTISFDPNLRPVLWKSEAEMVEKLNRLAFQADWVLPGLKEGMILTGQQTPEAIADFYLRHGVKAVIVKTGADGAWYKTASGEQGCVAPVKVDNVVDTVGAGDGFAVGVISALLEGHSLHQAVTRGNKIGALAIQVQGDSEGLPTREQLGE
>NZ_CP024898.1|WP_003827414.1|1305142_1306750_+|ABC-transporter-substrate-binding-protein
MSISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGTTEVIPGLAEKWEISEDGKTYTFHLRQGVKWQDNKEFKPTRDFNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDDKTVQFVLTRPEAPFLADLAMDFASILSKEYADNMLKAGSPEKVDLNPIGTGPFQLQQYQKDSRILYKAFEGYWGTKPQIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLMEQAGLNVGYLSFNTEKKPFDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDPEKAKALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMVQADWAKIGVQAKIVTYEWGEYLKRAKAGEHQAVMMGWTGDNGDPDNFFATLFSCAAAKDGSNYSRWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIVAHSTVYEPVRKEVKGYVVDPLGKHHFENVSVE
>NZ_CP024898.1|WP_032945322.1|1306916_1307936_+|dipeptide-ABC-transporter-permease-DppB
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRLPVWEEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
>NZ_CP024898.1|WP_100271783.1|1307945_1308848_+|dipeptide-ABC-transporter-permease-DppC
MSQVTENKVIAAPMPMTPLQEFWHYFKRNKGAVVGLVYVVVMILIAVFANVLAPYNPADQFRDTLLAPPAWQDGGTMAHLFGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLLMGVVLGLIAGYFGGIVDNVIMRVVDIMLALPSLLLALVLVAVFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
>NZ_CP024898.1|WP_100271784.1|1308858_1309842_+|dipeptide-ABC-transporter-ATP-binding-protein
MALLNVDKLSVHFGDVGSEFRAVDRISYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAENLEFNGRDLKRISEKERRQLVGAEVAMIFQDPMTSLNPCYTVGYQIMEAIKVHQGGNKKTRIQRAIDLLMLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPSGCLLNPRCPYATDKCRAEEPELNLLEGGRQSKCHYPLDDAGRPGL
>NZ_CP024898.1|WP_003827418.1|1309838_1310843_+|dipeptide-ABC-transporter-ATP-binding-subunit-DppF
MSTQKAALPQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLGRLLTMIEVPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINSTLSKEERREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQQ
>NZ_CP024898.1|WP_032945318.1|1311019_1312222_+|sigma-54-interacting-transcriptional-regulator
MVTIRWDIKTIDRLSMVEDVLKEFSCCDINIISMKVTPGRILIKSWCRQLQDISCVQSCLSQRADIIHVAYLCEEISELSTPEPERPRYFSDIICSSQSMHALIEKAIKIADSKYTVLIRGDTGTGKELLARAIHNSGQRRFYPFIPVNCSALPESLMESEFFGYEKGAFSGADCKGKKGLFEMADKGTLFLDEFGEMSLSLQAKLLRVLQDGGIRRVGGAHIIPVNVRIIVATNANLEEMVEQRLLRADLYYRINVLSLTIPPLRERPQDISLLIRHFVQKYAKEFQRRIILDKACFDALHHHSWPGNVRELENTIIRLMLMAESDVITREELGMVNLPAVERGPTERPFKEQVLCAERQLIEQMVEDNVSSRHIAKALGVSHTTVLNKIRGYQLESVG
>NZ_CP024898.1|WP_008786415.1|1312257_1313556_-|transporter
MQDNTLQLSNNTATAVPFSKKIPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLTGIWVFIVAFIIAYPATYIVQDIYLKTLSESETCNDYTDIISHYLGKNWGVFLGVIYFLMIIHGIFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAIASGGEKLLFKISGPMVVVKVGIIIVFGFAMVPHWNFANISAFPEASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRVADRVLATRMAIRTHRISYITLIAVILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGQIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNVLSRVIDIEKINPLVLTLGICTFIVITLVIWVSFRVSVLVFFQLGSPLYGIVSCIIPFFLIYKVTQLEKLRGLKTWLILLYGILLCLSPLLKLIE
>NZ_CP024898.1|WP_008786414.1|1313673_1314870_-|methionine-gamma-lyase
MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLTSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF
>NZ_CP024898.1|WP_003827426.1|1315295_1315403_+|type-I-toxin-antitoxin-system-toxin-Ldr-family-protein
MTLAQLGVAFWHDLAAPIIAGTIASLIVSWLRNRK
>NZ_CP024898.1|WP_075553079.1|1315629_1317636_+|biofilm-formation-regulator-HmsP
MRVSRSLTIKQMAMVAAVVMVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPLSDTILKGDIPEAEAILKSIRPAGVVSRADVVLPNQFQALRMSFIPERPVPVTVTRLFELPVQISLPIYSLERSANPQPLAYLVLQADSYRMYKFVMSTLSTLVTIYLLLSLILTVAISWCINRLIVHPLRKIARELNDIQQQDLIGYQLALPRLHQDDEIGMLVRSYNLNQQLIQRHSEEQSDFAMRFPVSELPNKSFLMGLLEQVVTRQQTTALMIVTCETLRDTAGVLTETQREILLLTLVEKLKSVLAPRMVLSQVSGYDFAIIAHGVKEPWHAITLGQQVLTIVNERLPIQGIQLRPTCNIGVAMFYGDLTAEQLYRRALSAVLTSRHKGKNQIQFFDPLQMEEAQQRLTEENDILTALDNRQFALWMQPQVEMSSGKVLSAEALLRMQQPDGSWELPEGLIDRIESCGLMVTVGYWVLEETCRQLSAWQERGLMLPLSVNLSALQLMHPSMVSDLLELLNRYRIKPGTLILEVTESRHIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSLPVDVLKIDKMFVDGVPEDCSMISAIIQLAHSLNLQMIAEGVETEAQREWLSQAGVEVAQGFLFARPVPANIFEERYLAPESADYKS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024898_1	1.1\|735125\|54\|NZ_CP024898\|CRISPRCasFinder	735125-735178	54	NZ_CP024898.1	736503-736556	0	1.0

1. spacer 1.1|735125|54|NZ_CP024898|CRISPRCasFinder matches to position: 736503-736556, mismatch: 0, identity: 1.0

gccggataaggcgcttacaccgcatccggcaacggttgtgcctgatggcgctac	CRISPR spacer
gccggataaggcgcttacaccgcatccggcaacggttgtgcctgatggcgctac	Protospacer
******************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313598-313641	7	0.841
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	167174-167217	7	0.841
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	57112-57155	7	0.841
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	6906-6949	7	0.841
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	21759-21802	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229385-229428	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239879-239922	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404132-404175	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230791-230834	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211761-211804	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51840-51883	8	0.818
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397087-397130	9	0.795
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14111-14154	9	0.795
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	59713-59756	9	0.795
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40304-40347	9	0.795
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	100-143	9	0.795
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40380-40423	10	0.773
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386514-386557	10	0.773
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8894-8937	10	0.773
NZ_CP024898_2	2.1\|1304422\|44\|NZ_CP024898\|CRISPRCasFinder	1304422-1304465	44	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	17898-17941	12	0.727

1. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
cacaaaatgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
 * * * **************.**.******************.

2. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ggggcagcgccggatgcggcgtaagcgccttatccggcctacaa	Protospacer
..*.** .*************.*********************.

3. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
acgttgatgccggatgcggtgcaagcaccttatccggcctacag	Protospacer
* * .. ************.******.*****************

4. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 7, identity: 0.841

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ggggcagcgccggatgcggcgtaagcgccttatccggcctacaa	Protospacer
..*.** .*************.*********************.

5. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcaccaccgccggatgcggcgcgagcgccttatccggcctacga	Protospacer
. . ***.**************.*******************..

6. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

7. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

8. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
attttcttgccggatgcggcgtaaacgccttatccggcctacag	Protospacer
*   . .**************.**.*******************

9. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

10. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacgactgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
. .  ****************.**.*****************.*

11. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.818

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gagctggtgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
.** .. **************.**.******************.

12. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacaattgccggatgcggcgtaaacgccttatccggcctacat	Protospacer
. .  *.**************.**.******************

13. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
cgttgattgccggatgcggcgtaaacgccttatccggcctacat	Protospacer
 .   *.**************.**.******************

14. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcatcgttgccggatgcggcgcgagcgccttatccggcttaccg	Protospacer
. . *..***************.***************.*** *

15. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ttgtttatgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
  * .  **************.**.******************.

16. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.795

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
tttatgttgccggatgcggcgtaaacgccttatccggcctacaa	Protospacer
   *...**************.**.******************.

17. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.773

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ggctttttgccggatgcggcgtaaacgccttatccggcctacgg	Protospacer
..  . .**************.**.*****************.*

18. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.773

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcacaagtgccggatgcggcgtaaacgccttatccggcctacgc	Protospacer
. .  * **************.**.*****************.

19. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.773

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
ccgcggttgccggatgcggcgtaaacgccttatccggcctacga	Protospacer
  *  ..**************.**.*****************..

20. spacer 2.1|1304422|44|NZ_CP024898|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 12, identity: 0.727

aagacactgccggatgcggcgcaagcgccttatccggcctacag	CRISPR spacer
gcggacttgccggatgcggcgtaaacgccttatccggccacgaa	Protospacer
. *.  .**************.**.**************   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2754126 : 2762690

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032943978.1\|2754126_2755074_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.7e-07	25.3
WP_048234924.1\|2755057_2755789_+	ABC transporter permease	NA	NA	NA	NA
WP_003027354.1\|2755769_2755877_-	protein YohO	NA	NA	NA	NA
WP_003027351.1\|2756076_2756808_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.0e-105	93.5
WP_100272128.1\|2757033_2758719_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.4e-280	91.3
WP_003840155.1\|2758715_2759435_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_003834454.1\|2759481_2759952_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-63	77.4
WP_100272129.1\|2759992_2760451_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.1e-52	69.3
WP_032943974.1\|2760656_2762690_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	8.9e-54	27.6

DBSCAN-SWA_2

2857269 : 2865463

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100272163.1\|2857269_2858664_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	5.5e-23	35.0
WP_060854693.1\|2858829_2859723_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.6e-44	39.7
WP_100272164.1\|2860092_2861178_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-100	53.9
WP_100272165.1\|2861177_2862077_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	1.0e-30	35.3
WP_100272166.1\|2862128_2863007_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.6e-105	63.4
WP_100272167.1\|2863011_2863560_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.2e-50	55.6
WP_100272168.1\|2863602_2864748_+	hypothetical protein	NA	NA	NA	NA
WP_100272169.1\|2864680_2865463_+	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	8.2e-08	32.4

DBSCAN-SWA_3

2938136 : 2947949

Escherichia_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072213458.1\|2938136_2938808_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.9e-67	77.5
WP_044700602.1\|2938931_2939285_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.8e-24	51.9
WP_000855179.1\|2939332_2939695_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_100272201.1\|2939712_2941464_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_100272202.1\|2941511_2942801_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.7e-173	74.7
WP_100272203.1\|2942813_2943239_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	3.3e-51	70.7
WP_065554936.1\|2943305_2943602_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100272204.1\|2943702_2944794_+	permease	NA	NA	NA	NA
WP_065554934.1\|2945076_2945310_+	DinI family protein	K7PM44	Enterobacteria_phage	2.7e-31	83.1
WP_100272205.1\|2945355_2945601_+	hypothetical protein	H6WRY6	Salmonella_phage	1.3e-20	62.2
WP_065554933.1\|2945730_2945931_+	hypothetical protein	H6WRY8	Salmonella_phage	1.9e-17	61.5
WP_048221174.1\|2945933_2946293_+	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	4.0e-42	64.4
WP_100272206.1\|2946289_2947330_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	2.1e-96	50.4
WP_060683642.1\|2947343_2947949_+	hypothetical protein	H9C175	Pectobacterium_phage	5.6e-81	72.1

DBSCAN-SWA_4

2992719 : 3030648

Salmonella_phage(28.57%)

head,integrase,holin,portal,protease,capsid,terminase,tail

attL 2992538:2992597|attR 3030835:3030958

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2992538:2992597	attL	NA	NA	NA	NA
WP_100272223.1\|2992719_2993730_-\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	9.5e-174	87.5
WP_065944714.1\|2993729_2993957_-	DUF4224 domain-containing protein	K7PHA0	Enterobacterial_phage	4.6e-36	88.0
WP_100272225.1\|2994342_2994558_-	hypothetical protein	G8C7S3	Escherichia_phage	1.7e-08	51.7
WP_100272226.1\|2994554_2994959_-	DUF551 domain-containing protein	G5DA83	Enterobacteria_phage	7.2e-08	37.0
WP_100272896.1\|2995460_2995769_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	3.8e-33	73.9
WP_100272227.1\|2995773_2996187_-	hypothetical protein	I6RSM9	Salmonella_phage	3.8e-20	76.6
WP_100272228.1\|2996170_2997211_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	7.7e-163	87.8
WP_100272229.1\|2997210_2997624_-	hypothetical protein	K7PJS4	Enterobacterial_phage	6.8e-46	72.1
WP_100272230.1\|2997671_2998109_-	hypothetical protein	K7P7N6	Enterobacteria_phage	6.2e-29	42.8
WP_100272231.1\|2998996_2999203_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.6e-16	69.1
WP_100272232.1\|2999241_2999592_-	hypothetical protein	NA	NA	NA	NA
WP_100272233.1\|2999591_3000026_-	hypothetical protein	NA	NA	NA	NA
WP_165919942.1\|3000042_3000750_-	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	2.4e-75	55.8
WP_047715881.1\|3000829_3001081_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.7e-13	52.2
WP_100272234.1\|3001109_3001664_+	hypothetical protein	U5P4K1	Shigella_phage	2.9e-47	51.9
WP_100272235.1\|3001827_3002034_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.2e-14	67.9
WP_100272236.1\|3001996_3002917_+	conserved phage C-terminal domain-containing protein	K7PLZ7	Enterobacterial_phage	4.7e-63	84.1
WP_100272237.1\|3002919_3003363_+	hypothetical protein	U5P0U0	Shigella_phage	1.4e-12	30.4
WP_100272238.1\|3003704_3004094_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	2.7e-44	66.7
WP_100272239.1\|3004110_3004836_+	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	1.5e-56	53.5
WP_100272240.1\|3004832_3005822_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	1.9e-142	70.8
WP_100272241.1\|3005836_3006415_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.3e-46	54.4
WP_100272242.1\|3006673_3006970_+	hypothetical protein	NA	NA	NA	NA
WP_100272243.1\|3006981_3007485_+	hypothetical protein	NA	NA	NA	NA
WP_008784467.1\|3007584_3007971_+\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	1.0e-56	92.2
WP_072161075.1\|3007957_3008239_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	7.0e-18	47.1
WP_100272244.1\|3008238_3008853_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	8.5e-93	81.9
WP_100272245.1\|3008860_3009130_+	hypothetical protein	G8C7W1	Escherichia_phage	1.7e-21	69.0
WP_100272247.1\|3009369_3009726_-	hypothetical protein	NA	NA	NA	NA
WP_100272248.1\|3009916_3010267_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	3.3e-49	77.2
WP_100272249.1\|3010423_3010897_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	3.9e-77	88.5
WP_100272250.1\|3010896_3012654_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	90.3
WP_163208360.1\|3012662_3012812_+	hypothetical protein	NA	NA	NA	NA
WP_038642109.1\|3012801_3014028_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	9.0e-211	86.5
WP_058806104.1\|3014020_3014620_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	7.8e-91	83.0
WP_048997965.1\|3014629_3015847_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	1.2e-170	75.8
WP_038642103.1\|3015924_3016245_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	2.8e-23	53.9
WP_100272251.1\|3016254_3016593_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.7e-39	69.6
WP_100272252.1\|3016589_3017039_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	1.4e-65	85.9
WP_058806107.1\|3017035_3017383_+	DUF3168 domain-containing protein	A0A220NRP0	Escherichia_phage	7.0e-44	74.8
WP_038642094.1\|3017440_3018145_+\|tail	tail protein	K7PHL2	Enterobacterial_phage	5.7e-93	74.4
WP_100272253.1\|3018172_3018544_+\|tail	phage tail protein	S4TSQ0	Salmonella_phage	1.9e-55	86.8
WP_100272254.1\|3018555_3018846_+	DUF4035 domain-containing protein	S4TND7	Salmonella_phage	1.8e-40	90.6
WP_038642089.1\|3018904_3019084_+	hypothetical protein	K7PH36	Enterobacterial_phage	6.2e-20	84.7
WP_100272255.1\|3019129_3022414_+\|tail	phage tail tape measure protein	K7PKG1	Enterobacteria_phage	0.0e+00	70.5
WP_100272256.1\|3022566_3022782_-	hypothetical protein	H6WRW0	Salmonella_phage	2.2e-11	57.6
WP_100272257.1\|3022952_3023546_+	hypothetical protein	S4TSP7	Salmonella_phage	6.3e-109	97.0
WP_049001813.1\|3023545_3024130_+	DUF2163 domain-containing protein	S4TND4	Salmonella_phage	2.3e-103	95.4
WP_100272258.1\|3024136_3024535_+	hypothetical protein	S4TR39	Salmonella_phage	2.5e-69	93.9
WP_100272259.1\|3024534_3027249_+	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	90.7
WP_100272260.1\|3027248_3028193_+	hypothetical protein	H6WRW5	Salmonella_phage	1.6e-119	67.1
WP_100272261.1\|3028202_3029561_+\|tail	phage tail protein	A0A1V0E5M2	Salmonella_phage	4.3e-113	50.5
WP_003841691.1\|3029695_3029938_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.2e-29	79.2
WP_000982849.1\|3030013_3030256_+	hypothetical protein	I6PD82	Cronobacter_phage	3.8e-20	54.4
WP_047357985.1\|3030258_3030648_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	7.8e-52	72.1
3030835:3030958	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3257615 : 3310495

Enterobacteria_phage(36.0%)

head,integrase,holin,coat,terminase,tail

attL 3245733:3245747|attR 3291030:3291044

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3245733:3245747	attL	NA	NA	NA	NA
WP_100272326.1\|3257615_3258452_+	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	1.4e-08	40.0
WP_003020691.1\|3258489_3258819_-	YciU family protein	NA	NA	NA	NA
WP_003020687.1\|3258853_3260314_-	cardiolipin synthase	NA	NA	NA	NA
WP_094301000.1\|3260456_3260630_+	YciY family protein	NA	NA	NA	NA
WP_100272327.1\|3260884_3262078_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	2.6e-202	84.1
WP_008322518.1\|3262070_3262271_-	hypothetical protein	K7PM28	Enterobacteria_phage	1.9e-25	82.5
WP_008322517.1\|3262316_3262559_-	DUF4060 family protein	K7PHF4	Enterobacteria_phage	2.6e-29	82.3
WP_100272328.1\|3262598_3263639_-	recombinase RecT	K7PKR8	Enterobacteria_phage	2.0e-155	75.9
WP_100272329.1\|3263653_3266503_-	PD-(D/E)XK nuclease-like domain-containing protein	K7P6V4	Enterobacteria_phage	4.4e-293	60.9
WP_170975043.1\|3266642_3266801_-	hypothetical protein	K7PGY4	Enterobacteria_phage	1.3e-21	92.3
WP_100272330.1\|3266811_3267009_-	DUF1482 family protein	NA	NA	NA	NA
WP_097728169.1\|3267008_3267209_-	hypothetical protein	NA	NA	NA	NA
WP_191553936.1\|3267205_3267364_-	hypothetical protein	NA	NA	NA	NA
WP_049041823.1\|3267484_3267778_+	hypothetical protein	NA	NA	NA	NA
WP_191553937.1\|3267758_3268028_-	hypothetical protein	NA	NA	NA	NA
WP_040230817.1\|3268247_3268472_+	hypothetical protein	K7P7I0	Enterobacteria_phage	5.7e-15	63.2
WP_019076926.1\|3268503_3268884_-	hypothetical protein	NA	NA	NA	NA
WP_040230821.1\|3268973_3269882_-	hypothetical protein	NA	NA	NA	NA
WP_008322488.1\|3270077_3270776_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-102	79.3
WP_100272333.1\|3270886_3271108_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	8.2e-22	67.6
WP_100272334.1\|3271133_3271673_+	toxin YdaT domain-containing protein	K7PJT7	Enterobacteria_phage	8.5e-81	86.0
WP_100272335.1\|3271840_3272788_+	hypothetical protein	G9L6A8	Escherichia_phage	1.8e-25	33.0
WP_100272336.1\|3272790_3273540_+	ATP-binding protein	S4TNF5	Salmonella_phage	5.3e-121	87.1
WP_100272337.1\|3273558_3273870_+	hypothetical protein	NA	NA	NA	NA
WP_100272338.1\|3273866_3274352_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	8.8e-69	78.1
WP_100272339.1\|3274884_3275652_+	hypothetical protein	NA	NA	NA	NA
WP_100272340.1\|3275648_3276047_+	hypothetical protein	NA	NA	NA	NA
WP_100272341.1\|3276751_3277009_+	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	4.6e-24	77.3
WP_100272342.1\|3277008_3277263_+	hypothetical protein	NA	NA	NA	NA
WP_064545070.1\|3277364_3277964_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	2.9e-106	97.0
WP_100272343.1\|3277963_3278170_+	hypothetical protein	S4TNP0	Salmonella_phage	1.8e-23	72.1
WP_100272344.1\|3278172_3278781_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	7.0e-47	61.8
WP_100272345.1\|3278777_3278915_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.2e-15	88.4
WP_100272346.1\|3278911_3279601_+	antiterminator	I6PDF8	Cronobacter_phage	3.3e-61	52.2
WP_100272347.1\|3280593_3280782_+	hypothetical protein	NA	NA	NA	NA
WP_003826170.1\|3281128_3281407_+\|holin	holin	K7P6H9	Enterobacteria_phage	3.3e-44	97.8
WP_100272348.1\|3281378_3281927_+	lysozyme	K7PM52	Enterobacteria_phage	3.2e-99	94.5
WP_100272349.1\|3281923_3282457_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.0e-09	50.0
WP_071891841.1\|3282460_3282676_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_191238446.1\|3282654_3282825_+	hypothetical protein	NA	NA	NA	NA
WP_100272350.1\|3282915_3283302_-	hypothetical protein	NA	NA	NA	NA
WP_172960224.1\|3283378_3284020_+	hypothetical protein	I6S676	Salmonella_phage	2.1e-110	89.5
WP_100272351.1\|3284051_3284540_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	2.5e-47	75.6
WP_100272352.1\|3284536_3286084_+\|terminase	terminase	G8C7P3	Escherichia_phage	2.5e-282	86.9
WP_100272353.1\|3286095_3287547_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.6e-177	67.0
WP_191553938.1\|3287494_3288481_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	5.7e-107	66.1
WP_100272355.1\|3288498_3289887_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.6e-166	69.4
WP_100272356.1\|3289890_3290331_+	hypothetical protein	F1C5E0	Cronobacter_phage	2.0e-43	65.1
WP_100272357.1\|3290341_3291418_+\|coat	phage coat protein	F1C5E1	Cronobacter_phage	3.4e-153	75.1
3291030:3291044	attR	NA	NA	NA	NA
WP_100272358.1\|3291427_3291793_+	hypothetical protein	NA	NA	NA	NA
WP_100272359.1\|3291795_3292176_+	hypothetical protein	F1C5E2	Cronobacter_phage	7.5e-31	55.3
WP_100272360.1\|3292175_3292346_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_100272361.1\|3292349_3292712_+	hypothetical protein	G0ZNE2	Cronobacter_phage	5.1e-37	61.7
WP_100272362.1\|3292701_3293070_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.8e-45	75.4
WP_100272363.1\|3293066_3293450_+	hypothetical protein	F1C5E4	Cronobacter_phage	7.5e-39	62.2
WP_100272364.1\|3293512_3294256_+	Ig domain-containing protein	F1C5E5	Cronobacter_phage	1.2e-72	82.9
WP_100272365.1\|3294314_3295007_+	hypothetical protein	G0ZNE7	Cronobacter_phage	1.9e-72	60.8
WP_100272366.1\|3295148_3295424_+	cor protein	Q5G8V7	Enterobacteria_phage	1.2e-22	67.5
WP_100272367.1\|3295557_3296229_+	hypothetical protein	A0A0R6PJY5	Moraxella_phage	1.3e-46	48.5
WP_100272368.1\|3296294_3299627_+	tape measure protein	Q5G8W8	Enterobacteria_phage	0.0e+00	85.4
WP_100272369.1\|3299629_3299980_+\|tail	phage tail protein	I6RSL7	Salmonella_phage	2.6e-54	87.1
WP_080192186.1\|3299976_3300264_+	hypothetical protein	NA	NA	NA	NA
WP_031608852.1\|3300306_3301011_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	6.0e-135	97.4
WP_100272370.1\|3301010_3301730_+	C40 family peptidase	Q5G8W2	Enterobacteria_phage	5.8e-125	83.7
WP_100272371.1\|3301672_3302200_+\|tail	tail assembly protein	I6RSM0	Salmonella_phage	2.4e-56	78.1
WP_100272372.1\|3302209_3305392_+	host specificity protein J	A0A1V0E5M1	Salmonella_phage	0.0e+00	91.7
WP_100272373.1\|3305391_3306336_+	hypothetical protein	H6WRW5	Salmonella_phage	6.7e-121	68.0
WP_100272374.1\|3306345_3307710_+\|tail	phage tail protein	A0A1V0E5M2	Salmonella_phage	6.7e-114	50.5
WP_008322426.1\|3307844_3308087_-	DinI family protein	Q6UAW0	Klebsiella_phage	4.4e-29	76.6
WP_003826234.1\|3308165_3308555_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	1.0e-51	72.1
WP_100272375.1\|3309248_3309569_-	hypothetical protein	NA	NA	NA	NA
WP_100272376.1\|3309823_3310495_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-79	59.5

DBSCAN-SWA_6

3385289 : 3393489

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100272394.1\|3385289_3386399_+	chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-09	21.9
WP_032943570.1\|3386553_3387537_+	zinc transporter ZntB	NA	NA	NA	NA
WP_191553967.1\|3387812_3387980_+	hypothetical protein	NA	NA	NA	NA
WP_008784890.1\|3388008_3389382_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.3e-52	32.0
WP_032943567.1\|3389460_3390396_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	9.8e-141	94.5
WP_100272395.1\|3391030_3391273_-	DinI family protein	Q6UAW0	Klebsiella_phage	3.4e-29	77.9
WP_003833207.1\|3391458_3391893_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.2e-29	52.1
WP_003833205.1\|3391974_3392187_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_100272396.1\|3392334_3393489_-	porin OmpC	Q1MVN1	Enterobacteria_phage	7.4e-114	57.0

DBSCAN-SWA_7

3810706 : 3820714

Brazilian_cedratvirus(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100272565.1\|3810706_3811486_+	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.3e-10	27.7
WP_100272566.1\|3811482_3812925_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.3e-51	35.3
WP_048214327.1\|3812986_3813700_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003836644.1\|3814018_3814483_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_008784579.1\|3814560_3815310_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
WP_048226751.1\|3815309_3815861_-	glutathione peroxidase	NA	NA	NA	NA
WP_048214330.1\|3815921_3816902_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	8.7e-15	24.2
WP_003030571.1\|3817023_3817323_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_032943162.1\|3817327_3819715_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003832580.1\|3819730_3820714_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5

DBSCAN-SWA_8

4479187 : 4487317

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048235896.1\|4479187_4480018_-	alpha/beta hydrolase	W8EHU1	Mycobacterium_phage	6.0e-17	31.2
WP_003831264.1\|4480293_4480704_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_003022101.1\|4480887_4481316_+	universal stress protein UspG	A0A1W6JNV4	Morganella_phage	1.1e-17	38.5
WP_100272780.1\|4481385_4482153_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_008784074.1\|4482152_4482710_-	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	6.2e-26	37.7
WP_048235898.1\|4482706_4484977_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	2.6e-46	25.0
WP_008784072.1\|4484973_4485528_-	molecular chaperone TorD family protein	A0A077SLS7	Escherichia_phage	7.6e-08	29.0
WP_020996553.1\|4485751_4487317_-	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	1.1e-43	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection