CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024884	Klebsiella aerogenes strain AR_0009 plasmid tig00000054_pilon, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP024885	Klebsiella aerogenes strain AR_0009 chromosome, complete genome	4 crisprs	csa3,cas3,DEDDh,WYL,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024885_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024885_1

656117-656247

Orphan

Consensus_repeat	Method
AACATACGGGTTTTTCCTGTATAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024885_1

>merge|NZ_CP024885|1|656117-656247|CRISPRCasFinder
ATAGTACAGGTTTTTCCCGTATATCATGCCGAAACATACGGGTTTTTCCTGTATATCATCATGCAGACATACGGGTTTTTCCTGTATATCCAGTTAACCAACATCTGAACATACGGGTTTTTCCCGTATAT

>NZ_CP024885|1|1|656117-656247|CRISPRCasFinder
ATAGTACAGGTTTTTCCCGTATAT	CATGCCGAAACATACGGGTTTTTCCTGTATATCATCATGCA
GACATACGGGTTTTTCCTGTATAT	CCAGTTAACCAACATCTG
AACATACGGGTTTTTCCCGTATAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024885.1\|WP_015369817.1\|648278_650144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP024885.1\|WP_100280334.1\|657112_657730_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP024885.1\|WP_015369803.1\|660249_660969_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236782
NZ_CP024885.1\|WP_015369814.1\|651525_651894_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369811.1\|653093_653315_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_080473210.1\|653314_653554_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369808.1\|654000_654831_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP024885.1\|WP_015369815.1\|650469_651504_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377147
NZ_CP024885.1\|WP_004144724.1\|664278_664995_+\|DUF554-domain-containing-protein	unknown	unknown	gnl\|CDD\|377371
NZ_CP024885.1\|WP_015369801.1\|662182_663676_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|376697
NZ_CP024885.1\|WP_032710479.1\|650136_650337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369799.1\|665048_665603_+\|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235156
NZ_CP024885.1\|WP_015369805.1\|657774_658221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_032710480.1\|658835_659561_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP024885.1\|WP_015369813.1\|651890_652112_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369804.1\|658281_658710_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369812.1\|652779_653097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369800.1\|663687_664266_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NZ_CP024885.1\|WP_015369818.1\|647673_647952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369802.1\|661056_661971_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
NZ_CP024885.1\|WP_015369817.1\|648278_650144_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.00889335
NZ_CP024885.1\|WP_100280334.1\|657112_657730_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	9.30463e-19
NZ_CP024885.1\|WP_015369803.1\|660249_660969_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	3.56856e-77
NZ_CP024885.1\|WP_032710480.1\|658835_659561_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	2.36661e-10
NZ_CP024885.1\|WP_004144724.1\|664278_664995_+\|DUF554-domain-containing-protein	gnl\|CDD\|377371	pfam04474, DUF554, Protein of unknown function (DUF554). Family of uncharacterized prokaryotic proteins. Multiple predicted transmembrane regions suggest that the region is membrane associated.	5.44348e-75
NZ_CP024885.1\|WP_015369800.1\|663687_664266_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	3.25619e-99
NZ_CP024885.1\|WP_015369799.1\|665048_665603_+\|isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235156	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase.	9.78089e-108
NZ_CP024885.1\|WP_015369808.1\|654000_654831_-\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	0.000184752
NZ_CP024885.1\|WP_015369815.1\|650469_651504_-\|hypothetical-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.2991e-08
NZ_CP024885.1\|WP_015369802.1\|661056_661971_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.92068e-36
NZ_CP024885.1\|WP_015369801.1\|662182_663676_+\|UbiD-family-decarboxylase	gnl\|CDD\|376697	pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. This family has been characterized as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes. This enzyme catalyzes the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+.	9.45664e-142

>NZ_CP024885.1|WP_015369808.1|654000_654831_-|hypothetical-protein
MTDIINSKVFSFTNTEDAFNECTRITNLKTGVTVSLSPTNKQLFVRIRHRFHNFVKKRGGKYYDNIDQLGESVGVKYDAASDGIKKLKAVGLISGTIKGRSYQWESVADLTPEDFLFERDINAMKRKTAPEWVDCLKHPVFGNAKEDVAPEVQEEKQQSVPEADPMCEFDDTPEEEEPAPEKVEPAPKPKPTKKPAARKAPDKQQTVSPFEFKTPRDETKDWWYLERCNDADQFTGLTDFDLPYLAMFERQGKLTNQHSIQHLKMKRELYARQQQT
>NZ_CP024885.1|WP_080473210.1|653314_653554_-|hypothetical-protein
MPTGSEFELLQDVLSSTDNVYYKPRRRREYQVDSSNLQHWQVLGFQHYADYVGYSQTNGLSGHTADFDFIFHDEKEIHD
>NZ_CP024885.1|WP_015369811.1|653093_653315_-|hypothetical-protein
MHVQTTQTKRFAQHVKCCQWYYEEIDLITNDAYLTDEEKLAALDELEDKILTLAAPFLAVATTIKAYKERMTQ
>NZ_CP024885.1|WP_015369812.1|652779_653097_-|hypothetical-protein
MTKTNIDTLLQDFHDQLHIPLLDACIKASREGTPENLTAALKLLHLASVAMQGIIAVVESTESLSDDQDVLGEVSRMAQSLVTCMQDLDALAHDIAEEYAVLETE
>NZ_CP024885.1|WP_015369813.1|651890_652112_-|hypothetical-protein
MFLINNKSRVLKYKNDVLTINPQIIEQVAQYAGCEVSDVIKAMETYFPDESPEQKPTIDDLIARKVKGLNQTK
>NZ_CP024885.1|WP_015369814.1|651525_651894_-|hypothetical-protein
MIIDLDTLFPQRLSLTDLVSYSTDHFASIESKIFASLPADVECGDVIGADGSLYTSGADAFVVVSEFVTAGSNKAVNVLRSPARGSLVCIKSDNLTAADGAHDAAVAALAAQGFQMREFFTS
>NZ_CP024885.1|WP_015369815.1|650469_651504_-|hypothetical-protein
MAILGQNYVDLSPLFNLNPTRNYLLASLGLFDGVGVSSHKVAVSRLVEDNRSLFNEPTARFSSEHNVTARQNGKEWLIELPYFLREDQITPADIQGKRKPGTDTQETLTDLFTDYTHKHSVAFMRTRESYLARSLFSGTVNTPKTDDVLIDFGDLFGVAPMNTTLDLSATDSSTLRAIDDMVSQITETAQGMAAQVERIIVFAKGGFYSDLRFSPAMEAAFRYVSPLDESNVVYQRRDLLPGVSTFSIPGSNVDVIKVTDPLLLAQMGDADAIAIPQFAAGLNVYQNIYGAPSSNFELLDATPAETYSWSYESERGDVVNCINEHSSLPVNNGLGFSVHIKASE
>NZ_CP024885.1|WP_032710479.1|650136_650337_-|hypothetical-protein
MEMILKSSRGLHVRVSADDAEGLLKVSQLCELLEISYTGVRARIFRGETVEQAIHHFLDQKGGGDA
>NZ_CP024885.1|WP_015369817.1|648278_650144_-|hypothetical-protein
MLEINTSKIVNTVTFTVDKSSIAEAKKAADDLQRHFKKLENPKIRFQAQKQRRQSAREKVADAKAASPKTSNDLKQQRQAEKAGKAQAREAAKIAKRNETADIKFKSAGLQLRGIKGKYGLDPAKQYEALKFIQQETEAFKKGLITSQRMNFTIRERITDLRREAALQARITASTQQQAAALKHVKRTDYKGAAAGIKEKGLNVIGGGAPLLGATAALAGGAGVLSRIRDKGNENLELVRMSERTKLNPNAVKAIVAWGQQHGVDSASVDKITDGFGKDTREKISETLMNSQFDQKSGKWKGGNSNIEEILNKFGWGKGAIAKYEDNPLDFLQSTVNEGQRRGYSDGEIAHLLENIFDDGAHYVDLFKNNGEQFISTLKKLVDSGQTLNDEQIKQTYAFGDLSVAMSSLMNGVDNSMFTGFMKGFADGGDELVKNTQVITEAAGSLGEGLGNLSKEITGFVGEISGVVSDLNAGLRSRFPDWFSDANKPAAQALYDGAVGDSANATADWIKSKTGVDTREFGPAIMDWLGVGGGNVGTAASQYSLSGDYLRDSAMSFGGGAPAYTLNPTFNLTVAPEVPLTIQTDTSNLADYVDFTAKASQASFAQSLTLSALSGQSSTGG
>NZ_CP024885.1|WP_015369818.1|647673_647952_-|hypothetical-protein
MANNLFITYDLIKTKDYPAVHEAIKALGNWAKVTESNWYVNSNYSVDDAAEKVMAAMDNDDKLIVVDATNNSASWYNLTDEVENHIKDQWYK
>NZ_CP024885.1|WP_100280334.1|657112_657730_+|tyrosine-type-recombinase/integrase
MAISKGAKRTDGLESADQVKLVVEEIAKKSQTVADLFLLGVETQLRGVDMRSWRWVELDISSKVLRITQDKTKEAVEVELTETAREVLKARYNERGENVYVFQNDSNRSKGKPISRSKIHAEIQYAVDKLKMRGLLPQDAVISMHSSRKTIASIAHAQGEDLEVISKMLGHRSTEHTRAYLGITQAKVDALRTKYSTGIKRVTLR
>NZ_CP024885.1|WP_015369805.1|657774_658221_-|hypothetical-protein
MEVKKVSVEDYRADMGLMRGYSFDSQEIQDVKSFYYQEAVKQLSNLNCGIEIIREDENKNVLVFKVNEDLKFQLTLLNNIKYLSVDLHAYEKNNRYEDVLSEQYHYHCKGDSDYEFSDVEEHLEYDRVGQHFRHMLVCLVKEIAKIED
>NZ_CP024885.1|WP_015369804.1|658281_658710_-|hypothetical-protein
MADPASIAAISGTLELVNKSVDLVRNLRKKGDDELNAAEMRNTLIDLLDDLVEVKSEFVSLKAVLLSKEEEIQSLKAQLDGKNKLQFDGKLYWLEGDKTPYCTKCYEKDSLVFHLSFIHANRNWNSSEHWHCRNCQANYYLR
>NZ_CP024885.1|WP_032710480.1|658835_659561_-|HNH-endonuclease
MSSKSNRTYKYGDQPIRITTVQVVAEQFGGAATAKQVDAYLKERFPHYKDDTHLNLIVNSVNCNRSYWSFNKTARRTDDVTHRHHEYDRLFKRGKTFEIYQPSIHGIWELYQDQQGKWCYRKVKSEFEKAVDGASELPPSERKKILDAENNTPELIEVTTRVYKRSPYVVAEVLSRANGKCQSCMSDAPFLKVDGTPFLEVHHIEWLSNGGEDSVENAIALCPNCHRQAHFGVLELAPVNK
>NZ_CP024885.1|WP_015369803.1|660249_660969_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MKTRFYIAIMLLASLTLAGCSSTSDSGSTYTVKRGDTLYAISRSTGTSVRDLARLNNISPPYTIEVGQKLKLNGGSKAKSSTAGKKSSSTRTAAVTPSSAVPQSSWPPVGQRCWRWPTSGKVVMPYSTRDGGNKGIDIAGTRGQPVYAAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDKMMVNNGQSVKIGQQIATMGSTDADSVRLHFQIRYRATAIDPLRYLPPQGSKPKC
>NZ_CP024885.1|WP_015369802.1|661056_661971_-|LysR-family-transcriptional-regulator
MDLKRLRYFCRVVEHGSVSQAAKSLNMAQPPLSKRIQELEEELQVSLFERRGNRIEPTEAGYFLYRKGCEILRQVEDTARETADIAQKTRAEVRVGLTHLYQNYFQPLLMELYRRNPETAINISVTDSSHLETLLNEGAIDLALIQRPYRSEGFDYVSFDPIKLVAVINKKCLPQPPSNPFDYNALATMPLVLLHRAKDSGTYEMLMDLFRKSGVSAKVIMHITQPGVILDWLEGGLEAATLLPSSEVNAEKLPHCYVVDVFPSPQIFYPALVKLPSMSYLPALMDIIAGGYPFNAPKGVEVVE
>NZ_CP024885.1|WP_015369801.1|662182_663676_+|UbiD-family-decarboxylase
MAHSDKKAPSSVHDLRSALALLKTLPGEYVETDTEVDPHAELSGVYRYVGAGGTCQRPTRKNGPVMVFNNIKGFNDISVAIGLNGSRQRVSQFLQCEPAKLGHLLKDSVENAIAPTMVQGAAVCQEVVHLASDDDFDLRKLLPAPTNTEEDAGPYITMGLCYASDPQTGESDITIHRLCVQSRDELSMWLTPGRHIDAFRMKAEAAGQPLPISISIGVDPAIEIAACFEPPTTPLGFDELSIAGALRGHPVEMVQCKTINEKAIAHAEIVIEGELLPNVRVREDQNTNTGRAMPEFPGYTGEAKEAIPVIKVKAVTHRINPIWRTTVGPGEEHVNMAGIPTEASILDMVERAMPGKLLNVFAHSAGGGKLLAVLQFKKSSPADEGRQRQAALLAFSAFPELKHVILVDEDVDIFDSDDVLWAMQTRYQGDVDTVVIPGVRCHPLDPSQVPEYSPSILQQGMSCKTIFDCTVPFHLKHNFERSKFKAVDVKRFLPDFE
>NZ_CP024885.1|WP_015369800.1|663687_664266_+|UbiX-family-flavin-prenyltransferase
MTPRIIIGISGASGFQYGVKALELLQPLAVEVHLVVSKGAEKTCELETDYRLDEVMALADVVHPINHLGASISSGSFKTLGMLVAPCSMRSLGAIAHCLTDNLLTRAADVVLKERRRLVLLARETPLNLGHIRNMAAVTEMGGIIFPPVPALYQRPQSADDIITHSVNRALDLFDLEVNNIPRWGEGALHYA
>NZ_CP024885.1|WP_004144724.1|664278_664995_+|DUF554-domain-containing-protein
MLIGPYVNGSAVIIGGLIGAMAGGKLPERVKTALPMTFGLCSVGLGITLVLKVKYMPAVVLAMVLGAFLGELLHLEKRIGSAAGSTRGLINKVLPPVQGLGHEEFTEKFVAILVLFCASGTGIFGAMTEGMSGDPSILYIKTILDLFTAGIFATLLGYAVMTIAIPQIVIQVALAMLAVFILPMITPSMMADFSCAGGLLMVATGLRICNIKLFPVANMLPGLVLVMPFSHLWATLVA
>NZ_CP024885.1|WP_015369799.1|665048_665603_+|isopentenyl-diphosphate-Delta-isomerase
MAGEHVILLDEQDKPTGMLEKYAAHTLDTPLHLAFSCWLFNEQGQFLVTRRSLSKKAWPGVWTNSVCGHPQQGETFEQAVTRRCHFELGVEIADIAPVHPAFRYRAVAPNGIVENEVCPVFAARVVSELQPNDDEVMDYQWVELPEMLSALAATPWAFSPWMVLEAKNKNARQALIDFVARLRA

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Crispr_ID: NZ_CP024885_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024885_2

681526-681640

Orphan

Consensus_repeat	Method
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024885_2

>merge|NZ_CP024885|2|681526-681640|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGCCATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATCGTTGGGTAGCCCGGATAAGGCGTAGCCGC

>NZ_CP024885|2|2|681526-681640|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATC
GTTGGGTAGCCCGGATAAGGCGTAGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024885.1\|WP_002916480.1\|685918_687013_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP024885.1\|WP_015369791.1\|672812_673079_-\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NZ_CP024885.1\|WP_015369775.1\|692564_693161_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NZ_CP024885.1\|WP_015369777.1\|689823_691140_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP024885.1\|WP_015369785.1\|678385_680395_+\|copper-sensitivity-suppressor	unknown	unknown	gnl\|CDD\|226685
NZ_CP024885.1\|WP_015369781.1\|682500_685374_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP024885.1\|WP_015369789.1\|675208_675520_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NZ_CP024885.1\|WP_015369790.1\|673302_674286_+\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP024885.1\|WP_008806429.1\|674384_675044_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP024885.1\|WP_015703432.1\|691165_691744_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP024885.1\|WP_015369780.1\|685504_685894_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP024885.1\|WP_015369783.1\|680997_681501_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP024885.1\|WP_015369782.1\|681696_682440_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NZ_CP024885.1\|WP_015369788.1\|675570_676299_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP024885.1\|WP_015369778.1\|688648_689827_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP024885.1\|WP_015369784.1\|680396_681008_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP024885.1\|WP_004205298.1\|691910_692240_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NZ_CP024885.1\|WP_015369779.1\|687435_688638_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NZ_CP024885.1\|WP_015369787.1\|676418_677852_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
NZ_CP024885.1\|WP_015369786.1\|677976_678336_+\|copper-resistance-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024885.1\|WP_002916480.1\|685918_687013_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP024885.1\|WP_015369791.1\|672812_673079_-\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	2.85923e-47
NZ_CP024885.1\|WP_015369775.1\|692564_693161_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	3.09604e-121
NZ_CP024885.1\|WP_015369777.1\|689823_691140_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP024885.1\|WP_015369785.1\|678385_680395_+\|copper-sensitivity-suppressor	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	1.86087e-101
NZ_CP024885.1\|WP_015369781.1\|682500_685374_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP024885.1\|WP_015369789.1\|675208_675520_-\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	4.15277e-63
NZ_CP024885.1\|WP_015369790.1\|673302_674286_+\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP024885.1\|WP_008806429.1\|674384_675044_-\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
NZ_CP024885.1\|WP_015703432.1\|691165_691744_-\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.57873e-121
NZ_CP024885.1\|WP_015369780.1\|685504_685894_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.15876e-73
NZ_CP024885.1\|WP_015369783.1\|680997_681501_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	3.12599e-46
NZ_CP024885.1\|WP_015369782.1\|681696_682440_-\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	8.9853e-169
NZ_CP024885.1\|WP_015369788.1\|675570_676299_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.55426e-57
NZ_CP024885.1\|WP_015369778.1\|688648_689827_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NZ_CP024885.1\|WP_015369784.1\|680396_681008_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	3.91961e-54
NZ_CP024885.1\|WP_004205298.1\|691910_692240_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
NZ_CP024885.1\|WP_015369779.1\|687435_688638_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NZ_CP024885.1\|WP_015369787.1\|676418_677852_+\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0

>NZ_CP024885.1|WP_015369783.1|680997_681501_+|protein-disulfide-oxidoreductase
MASKIRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNFSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGDNATLEKWLTRKKMALPTVNDPSGQLARQWDIQVTPTLVVISQGEVKSVTTGWTSNWGMRLRLWLASW
>NZ_CP024885.1|WP_015369784.1|680396_681008_+|thioredoxin-domain-containing-protein
MRAITALLLLCVSAFSFAAPAEEPQSNGNDQLAQLLFNDPNSPRTGAKEPTLTIVSFTDYNCPYCKQFDPMLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPADELEGLVKEQLAKARGQ
>NZ_CP024885.1|WP_015369785.1|678385_680395_+|copper-sensitivity-suppressor
MFMVFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQSESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWHTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGEQFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSHGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADNGQAQESHIAITAGSAAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSNASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLTIHIGRTPVLTLLVILAIFLLLATAWRYRWRTALRAGALAIVVAGAVAFVAQQDGQGPRRDRVNWQPLSEQAIANALAEHKRVFIDVTADWCVTCKANKYNVLLRDDVQQALSAPDVIALRGDWSRPSADISQFLTARGSAAVPFNQIYGPGLPQGQILPALLDREQLLATLSAAKGK
>NZ_CP024885.1|WP_015369786.1|677976_678336_+|copper-resistance-protein
MIKRQRKAILLVLLACLVVLICTAQRMAGMHALVMNVTAASQSAQPGPDNAEAPVSPCELSAKSLMAVPPMLFEGALLAIALLLAVLAAIPPRIERIWPPRVISPPRLRVHLRLCVFRE
>NZ_CP024885.1|WP_015369787.1|676418_677852_+|6-phospho-beta-glucosidase
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAAQRINPEMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>NZ_CP024885.1|WP_015369788.1|675570_676299_+|MurR/RpiR-family-transcriptional-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDQLLEQAVDIILSSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCRVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIG
>NZ_CP024885.1|WP_015369789.1|675208_675520_-|ASCH-domain-containing-protein
MQANDITFFQRFQDDILAGRKTITIRDAAESHFKPGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVISEIYPAEDRFYVIEFKRL
>NZ_CP024885.1|WP_008806429.1|674384_675044_-|hemolysin-III-family-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>NZ_CP024885.1|WP_015369790.1|673302_674286_+|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPSSSARLPLTLMTLDDWALATITGPDGEKYLQGQITADVSHLTADQHLLAAHCDAKGKMWSNLRVFHRDGGFAWIERRSLREAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAGKPVVTEGVTSLLWFEHPAERFLLVTDADTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSVNSAQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLAGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>NZ_CP024885.1|WP_015369791.1|672812_673079_-|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKRLFIRLLENDDPDLFNWLMNHGKPADAQLQRMINLIQTRNRERGPVAI
>NZ_CP024885.1|WP_015369782.1|681696_682440_-|SDR-family-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNIKAATEVVNTIVESGGKATALRADISDEAQVMAMFEAIDRMGEPLMALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMSHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQTIAWLLSDKASYVTGSFLELAGGK
>NZ_CP024885.1|WP_015369781.1|682500_685374_-|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGSDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NZ_CP024885.1|WP_015369780.1|685504_685894_-|glycine-cleavage-system-protein-GcvH
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYADGWIFKIKASDEAQVAALLDAAAYEALLEDE
>NZ_CP024885.1|WP_002916480.1|685918_687013_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>NZ_CP024885.1|WP_015369779.1|687435_688638_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQAAPQPLDADAPPALRVSAINAASEKLLDKLGVWSEIIAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYRHHALVATIRTTEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQADAAAFNQALNIAFDNRLGLCQLESDRQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKLLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>NZ_CP024885.1|WP_015369778.1|688648_689827_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVLIVGGGMTGATLALAISRMTGGALPVHLIEAQDPASSRHPGFDDRAIALAAGTCQQLARIGIWQNLAKRATPIQRVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVNRSQDSVSLTLDSGETINGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFGWRLGRITHAGKRSVYPLALTTAIRSVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAELLADAHGLGEDVGNYSLLCRYQARRADDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>NZ_CP024885.1|WP_015369777.1|689823_691140_-|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPGKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPVVHEMRLFKSAEELEVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENACILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFTKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMITGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVIIEDGNENLTASVVKKADEIEALMAAARQS
>NZ_CP024885.1|WP_015703432.1|691165_691744_-|YecA-family-protein
MSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGILCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRSMHSATSDSLEDDGFLFQLYMPEGDNVSVFDRADALAGWVNHFLLGLGVTQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>NZ_CP024885.1|WP_004205298.1|691910_692240_+|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>NZ_CP024885.1|WP_015369775.1|692564_693161_+|5-formyltetrahydrofolate-cyclo-ligase
MTIQPDIPLSRQQIRQQIRERRRALSAEQQQRFALQAAERMMAYPPVVLAHTVALYLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSQLIFNRLKIYEPKLDVRDVLPLAELDVLITPLVAFDASGQRLGMGGGFYDRTLQNWRQYRLQPVGYAHDCQQVDTLPSEQWDIPLPAVITPGKTWRW

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Crispr_ID: NZ_CP024885_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024885_3

883746-883884

Orphan

Consensus_repeat	Method
TAAGGCGAAGCCGCTACCCGCATCCTGTTACCCGGCGGCGCTGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024885_3

>merge|NZ_CP024885|3|883746-883884|CRISPRCasFinder
TAAGGCGAAGCCGCTACCCGCATCCTGTTACCCGGCGGCGCTGCGCTTGGCCGGGCTACCGGTCCTGGCCGGAACGCCATTCTGTAGGCCGGGTAAGGCGAAGCCGCTACCCGCATCCTGTTACCCGGCGGCGCTGCGC

>NZ_CP024885|3|3|883746-883884|CRISPRCasFinder
TAAGGCGAAGCCGCTACCCGCATCCTGTTACCCGGCGGCGCTGCGC	TTGGCCGGGCTACCGGTCCTGGCCGGAACGCCATTCTGTAGGCCGGG
TAAGGCGAAGCCGCTACCCGCATCCTGTTACCCGGCGGCGCTGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024885.1\|WP_015369598.1\|880725_882105_+\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175
NZ_CP024885.1\|WP_009485173.1\|882687_883671_+\|transcriptional-regulator-EbgR	unknown	unknown	gnl\|CDD\|182389
NZ_CP024885.1\|WP_015369599.1\|879943_880462_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP024885.1\|WP_015369591.1\|894266_894563_-\|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase	unknown	unknown	gnl\|CDD\|182494
NZ_CP024885.1\|WP_015369603.1\|873971_875042_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|183150
NZ_CP024885.1\|WP_007372179.1\|875052_875685_+\|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL	unknown	unknown	gnl\|CDD\|182192
NZ_CP024885.1\|WP_015369600.1\|878941_879715_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|225250
NZ_CP024885.1\|WP_015369589.1\|897460_898495_-\|autoinducer-2-ABC-transporter-permease-LsrC	unknown	unknown	gnl\|CDD\|185330
NZ_CP024885.1\|WP_004900777.1\|887144_887594_+\|beta-galactosidase-subunit-beta	unknown	unknown	gnl\|CDD\|182302
NZ_CP024885.1\|WP_004144833.1\|895458_896460_-\|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB	unknown	unknown	gnl\|CDD\|237961
NZ_CP024885.1\|WP_015369590.1\|896461_897460_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|184998
NZ_CP024885.1\|WP_002917724.1\|894559_895447_-\|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase	unknown	unknown	gnl\|CDD\|181306
NZ_CP024885.1\|WP_015369594.1\|889351_890785_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NZ_CP024885.1\|WP_015369593.1\|890798_891857_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024885.1\|WP_015369597.1\|882147_882480_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP024885.1\|WP_015369592.1\|891874_894226_+\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|236653
NZ_CP024885.1\|WP_015369601.1\|877188_878838_+\|glycerone-kinase	unknown	unknown	gnl\|CDD\|274097
NZ_CP024885.1\|WP_015369602.1\|875695_877114_+\|dihydroxyacetone-kinase-subunit-DhaM	unknown	unknown	gnl\|CDD\|183108
NZ_CP024885.1\|WP_007372182.1\|872317_873415_-\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_CP024885.1\|WP_009485171.1\|887688_889122_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929

Protein	Function_ID	Function_description	E-value
NZ_CP024885.1\|WP_015369598.1\|880725_882105_+\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
NZ_CP024885.1\|WP_009485173.1\|882687_883671_+\|transcriptional-regulator-EbgR	gnl\|CDD\|182389	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional.	0
NZ_CP024885.1\|WP_015369599.1\|879943_880462_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.2141e-23
NZ_CP024885.1\|WP_015369591.1\|894266_894563_-\|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase	gnl\|CDD\|182494	PRK10486, PRK10486, (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase.	3.06054e-60
NZ_CP024885.1\|WP_015369603.1\|873971_875042_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|183150	PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP024885.1\|WP_007372179.1\|875052_875685_+\|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL	gnl\|CDD\|182192	PRK10005, PRK10005, dihydroxyacetone kinase ADP-binding subunit DhaL.	3.34409e-151
NZ_CP024885.1\|WP_015369600.1\|878941_879715_-\|siderophore-interacting-protein	gnl\|CDD\|225250	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism].	8.62782e-73
NZ_CP024885.1\|WP_015369589.1\|897460_898495_-\|autoinducer-2-ABC-transporter-permease-LsrC	gnl\|CDD\|185330	PRK15432, PRK15432, autoinducer 2 ABC transporter permease LsrC; Provisional.	0
NZ_CP024885.1\|WP_004900777.1\|887144_887594_+\|beta-galactosidase-subunit-beta	gnl\|CDD\|182302	PRK10202, ebgC, beta-galactosidase subunit beta.	3.13906e-88
NZ_CP024885.1\|WP_004144833.1\|895458_896460_-\|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB	gnl\|CDD\|237961	PRK15408, PRK15408, autoinducer 2 ABC transporter substrate-binding protein LsrB.	0
NZ_CP024885.1\|WP_015369590.1\|896461_897460_-\|ABC-transporter-permease	gnl\|CDD\|184998	PRK15038, PRK15038, autoinducer 2 ABC transporter permease LsrD.	4.5012e-147
NZ_CP024885.1\|WP_015369594.1\|889351_890785_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	3.63323e-45
NZ_CP024885.1\|WP_002917724.1\|894559_895447_-\|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase	gnl\|CDD\|181306	PRK08227, PRK08227, 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase.	0
NZ_CP024885.1\|WP_015369597.1\|882147_882480_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	2.93802e-46
NZ_CP024885.1\|WP_015369592.1\|891874_894226_+\|alpha-glucosidase	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	0
NZ_CP024885.1\|WP_015369601.1\|877188_878838_+\|glycerone-kinase	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NZ_CP024885.1\|WP_015369602.1\|875695_877114_+\|dihydroxyacetone-kinase-subunit-DhaM	gnl\|CDD\|183108	PRK11377, PRK11377, dihydroxyacetone kinase subunit M; Provisional.	0
NZ_CP024885.1\|WP_007372182.1\|872317_873415_-\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_CP024885.1\|WP_009485171.1\|887688_889122_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	1.81959e-40

>NZ_CP024885.1|WP_009485173.1|882687_883671_+|transcriptional-regulator-EbgR
MATLKDIATEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKSSSARKTQVLPVGHHHILALYSYQQELEINDPYYLAIRHGIETQCEKLAIELTNCYLNNTLPELKKVTGVLIIGQPTRELRETASALTDNICFIDFHEAGSPYDAVDIDLVRIAKEVVDFFIQQGASRIGFIGGQDQPGKADIREVAFVEYGQLKGVVSADDIWRGGFSSSSGYELAKQMLAQAEFPRALFVASDSIAIGVLRAIHERGLAIPEDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLIEKARDGRALPLNVFVPSVLKLRGTTR
>NZ_CP024885.1|WP_015369597.1|882147_882480_-|tRNA-binding-protein
MDTVAYADFAKLEMRVGKIVEVKRHDNADKLYIARIDVGDRTLQTVTSLVPYYSEEELLGKTVVVLCNLAKAKMRGETSECMLLCAETEDESESVLLTPERVMPAGVRVV
>NZ_CP024885.1|WP_015369598.1|880725_882105_+|putrescine-aminotransferase
MNRLPSSASALACSAHALNLIEKQSLSHDEMKALNQEVREYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVENQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFVATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGDINAMRSILSECKKTGDDVAAVIIEPIQGEGGVILPPAGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLSQNLPAQAEQKGDLLLDGFRQLAREYPDLVNEVRGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRVEPPLTLTLEQCEQVLKAARKALAALRVSVEET
>NZ_CP024885.1|WP_015369599.1|879943_880462_+|PadR-family-transcriptional-regulator
MRHHHEEGHGEQGRRGGGRRQRFFGHGELRLVILDILSRNASHGYELIKEIEALTQGNYSPSPGVIYPTLDLLQDQGLISVEEENGRKKIAITEEGRRLRAESGELLSQIQTRLQERMVGCELRKNPQMKRALENFKAVLDLKVNQQSISDAQLKQIIGVIDRAAMEISQLD
>NZ_CP024885.1|WP_015369600.1|878941_879715_-|siderophore-interacting-protein
MTTIKQAKYPQRVRNELRFRELTVLRVERIGQAFQRIVLGGEALDGFVSQGFDDHTKLFFPQAGSVFTPPEVTDEGINWGEGVRPATRDYTPLYDAERHELAYDFYIHDGGIASRWALEANVGDKLVIGGPRGSLVVPEDYAWQLYVCDESGMPALRRRLLGLRQLPVTPQVTAIVSIADASYKDYLADLDGFNIEWVVGHNPAFVAERLAQVKMPSEDYFIWLTGEGAVVKSLLARFEDPSIDQQLVRSQAYWHSK
>NZ_CP024885.1|WP_015369601.1|877188_878838_+|glycerone-kinase
MSQFFFNQRASLVNDVIEGTIIASPWNNLARLESDPAIRVVVRRDLNKNNVAVISGGGSGHEPAHVGFIGKGMLTAAVCGDLFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKQPRGIAGTILVHKVAGYFAERGFNLATVLREAQYAANHTASIGVALASCHLPQEAESAPRHQPGHAELGMGIHGEPGASTIATHNSAEIMQIMVEKLTAVLPETGRLAVMLNNLGGVSVAEMAILTRELANTPLHARVDWLIGPASLVTALDMKGFSLTTIVLEESIEKALLSDVETASWQKPVQPRAVNIMPSALASARVSFTPSANPQVGDYVAQVTSTLSGLETHLNALDAKVGDGDTGSTFAAGAREIAALLQRQQLPLNDLPTLFALIGERLTVVMGGSSGVLMSIFFTAAGQKLEQGASMAEALNAGLGQMKFYGGADEGDRTMIDALQPALAALLAEPDNLQAAFAAAQAGADRTCQSSKAGAGRASYLNSESLLGNMDPGAHAVAMVFKALAER
>NZ_CP024885.1|WP_015369602.1|875695_877114_+|dihydroxyacetone-kinase-subunit-DhaM
MVNLVIVSHSARLGEGVGELARQMLMNDGCKLAIAAGIDDPDNPIGTDPIKVMEAIESVADTDHVLVMMDIGSALLSAETALDLLDPAMAAKVRLCAAPLVEGTLAATVSAASGAGIDKVIADAMNALEAKRVQLGLPSHTPDAAAPTLADDGDAKSVSVIINNHNGLHVRPASKLVAALAGFNADLVLEKNGKCVTPDSLNQIALLQVRRHDKLRLLARGPDADAALAAFQALAADNFGESPEAQPTAEPAIPARVEGAALLYPLAPIQPALPAAADVAREQQRLRQAIDQTLADLNALTELAENKFNADIAAIFAGHHTLLDDEDLFDAANDRLLTEQCSAEWAWHQVLMELSQQYRQLDDAYLQARYIDVDDILQRTLRHLQGIKETLPFASEPTIIIADNIYPSTVLQLDASQVTGLCLRDGSEQAHGAIIARAAGIAWLCQQGEALNDIQPGEAITLDMRQQRLIRR
>NZ_CP024885.1|WP_007372179.1|875052_875685_+|dihydroxyacetone-kinase-ADP-binding-subunit-DhaL
MSLNRTQIVDWLYRCGDIFTKQSDFLTGLDKEIGDADHGLNMHRGFSKVVEKLPSIADKDIGFILKNTGMTLLSNVGGASGPLFGTFFIRAAQVTQAHQSLTLDELYQMIREGADGVVNRGKAEPGDKTMCDVWLPVVESLRHSSEQHLSIPAALDAACEVAERAAHATITMQARKGRASYLGERSIGHQDPGATSVLFMVQMLAAAAKE
>NZ_CP024885.1|WP_015369603.1|873971_875042_+|dihydroxyacetone-kinase-subunit-DhaK
MKKLINRVEDVLSEQLIGLAKAHPELTLHQDPVYVTRADAPVAGKVALLSGGGSGHEPMHCSYIGQGMLSGACPGEIFTSPTPDKMFECAMQIDGGEGVLLIIKNYTGDILNFETATELLHESGVKVTTVVVDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLEACSELGRRLNNLGHSIGIALGACTVPAAGQPSFTLKDDEMEFGVGIHGEPGIDRRRFSSLDQTVDEMFDTLLENGAYSRTLRQWDNVKGAWQEVKQSKTALQNGDRVIALVNNLGATPLSELYGVYNRLAQRCEASGIVIERNLIGSYCTSLDMAGFSITLLKADDDTLALWDAPVHTPALNWGK
>NZ_CP024885.1|WP_007372182.1|872317_873415_-|glycerol-dehydrogenase
MLKVIQSPAKYLQGPDAAMLFGEYAKNLADSFFVIADDFVMKLAGDKVLNGLHSHNISCHAERFNGECSHAEINRLIAILKQHGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTIASTDAPTSALSVIYTEAGEFEEYLIYPKNPDMVVMDTAIIAKAPVRLLVAGMGDALSTWFEAKACFDARATSMAGGQSTAAALSLARLCYDTLLAEGEKARLAAQAGVVTDALERIVEANTYLSGIGFESSGLAGAHAIHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPLEEIETVMGFCEKVGLPITLAQMGVKEGIESKIHAVAKATCAEGETIHNMPFPVTADSVYAAILTADLLGQQWLAR
>NZ_CP024885.1|WP_004900777.1|887144_887594_+|beta-galactosidase-subunit-beta
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDSTTDALFVGNRRYFEVHYYLQGQQKIEFAAKENLQTVACYRDETDREYLKGIGETVKVHEGQMVICDIDEAYRFICDAPVKKVVLRVTVEDGYFLNK
>NZ_CP024885.1|WP_009485171.1|887688_889122_+|amino-acid-permease
MSESVRAKIGKFALLSMAFTAVFNVRNIVNNNIELGLSSAPIFLFATIVYFIPFVFIIAEFVSANKHSESGMYAWLKQPLGTRAAYLGSFLYWFVNLFFFLSLLPNVVAYASYAITGYAIPFSPMVTSLISIVLFAMATHISTKGATWLGKISECVAYGVFALFAIYVVGALTALGSGHVPAQPITLAAMEPTINWATLGIMCWIFQAAGGAETVAAYLNDTKGGQKSFIKVIITAGVLIGGMYALGSLLVNVFVARENLTYAGGMVEIFTGLGAYFHISEALMGRFVGIILFIAIFGSMMMWTAAPVKIHFSEIPKGIYGQKTTELNAHGVPVRAAWWQFLFVFLMLIVNGFGSASVQQMMNTAINLTAGTAMLPPLFIMAAYFVFRWKHDDTPRDFRMGSRKVGMSVVSMLIVIFVVSMTASAFPPGVDLVNAFFINVFMTAVFSGLAWWWITRFEKKQQRLRAAAPVNAAAAGK
>NZ_CP024885.1|WP_015369594.1|889351_890785_+|amino-acid-permease
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATLFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYILTPFATTVLSMALFAFSTWISTNGAKMLGPITSVTSSLMLLLTLSYILLAGTALVGGVQPADPITVEAMIPNFNWAFLGITTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSISSVLINVFVSSKELKFTGGSVQVFHGLAAYFGLPEILMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPSGIFGKKTVELNENGVPARAAWIQYLIVIPLMIIPTLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRRKLDHLPRDFRMGSRTTGIVVVSMLIVIFAIGFVASTFPTGGNILTIIFYNVGGIVIFLGFAWWKYSRYVKGLTQEQQQIEAAPASHTS
>NZ_CP024885.1|WP_015369593.1|890798_891857_+|hypothetical-protein
MKTNSYLYGALVALAFCAPAAAAETVHPAEHDDTKTPELTTTSYRFYGELGVGGYMDLEGEDKHKYSDGTYIEGGLEVKNGHWFGLIYGEAWTVQADSQGNAWTPGHSWGGVEGGLNRLYGGYKTDNNTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMYALKVQNRSGDFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMINGYVQYDIVKDVTWMNGLEVTDGTGQLFLTGILSPNLAFRAWHHTGRAKGLDVPGSETGFMASAMYEALSGLYFSTAYSYAKHRPDHAADETTAFMQFGIWYEYGGGRFATAADSRFYTSNTSGDPSDKIFLMQYFYW
>NZ_CP024885.1|WP_015369592.1|891874_894226_+|alpha-glucosidase
MNLTTTLTPLACALMLSFSAHAVTAQAFKNVIDRSGAPQYMQDFDADDHQRFNPFFDLGAWHGHLLPDGPATMGGFPGPALLTEEYINFMATNFDRLTVYQNGKKVDFTLQAWSLPGALKQTLTAPGVKVEMTLRFASAHTSLLETKITSNTPLKLVWDGELLEKLAAKEGKALSDKTIDEAFPDYQRRLSATPDGLTVSFGKVRAASDLMTSGESQYQIHRSLVTETRIDGHRFTSSAEIRGSTTLYTTYSHLLTAEQARREKAQIRDILARPAYYLTASEERWDGYLQKGLSNPDATAEQTRVAVKAIETLNGNWRAPGGAVHYHTVTPSVTGRWFSGNQTWPWDTWKQAYAMAHFNPDIAKENIRAVFSWQIKANDKVRPQDAGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTKDKAWLEEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTADGAMLFTVKKGQTEQTLSGLRAYEQVTAKGDYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVTNGGKRSDWTVKFAENRDRDGNLLGYSLLQESVDQASYMYSDNHYLAQMATILGKAEEAKRYQALAAKLADYINTCMFDPQTRFYYDIRIEEQPLANGCAGKPIVERGKGPEGWSPLFNGAATQQHADDVVSVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGHRDEALKLADAFFQHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNEFFRKQ
>NZ_CP024885.1|WP_015369591.1|894266_894563_-|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase
MNVTLVEINIKPERVDEFLEVFRANHEGALREPGNLRFDVLQDPEVKTRFFIYEAYKDDEAVLAHKKTPHYLACVEKLEEMMSQPRQKRSFIGLLPQM
>NZ_CP024885.1|WP_002917724.1|894559_895447_-|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase
MADLDDIKEGKDFGIDRPQQNTLYTLKGCGSLDWGMQSRLARIFNPHSNRTVMLAFDHGYFQGPTTGLERIDLSIAPLFADTDVLMCTRGVLRSQVPAATNKPVVLRASGGNSILSELSNECVAVAMEDALRLNVCAVAAQVYIGSEYEHQSINNIIKLVDAGNRYGMPVLAVTGVGKEMTRDARYFSLASRIAAEMGAQFVKTYFVEEGFEKVTASCPVPIVIAGGKKLPEHEALEMCWRAIDQGASGVDMGRNIFQSSAPRAMLKAVKKVVHENLNAREAYQFWQEEKQGELK
>NZ_CP024885.1|WP_004144833.1|895458_896460_-|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB
MKLKLIVLALAMSVVTAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSIYINQGTPQQLGGLLVEMAEKQVSKPAAKVAFFYSSPTVTDQNQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRQGVAIVGFSTPNVMRPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGDLNVGDSVEVKDIGSLKVEPNSVQGYQYEAKGNGIVLLPERVVFSKENINNYDF
>NZ_CP024885.1|WP_015369590.1|896461_897460_-|ABC-transporter-permease
MKLKLNWESALLALLIAEILLFGALNPRMLDINMLLFSTSDFICIGIVALPLTLVIISGGIDISLGSTIGLCAIALGVMTQAGWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAFANLTLAGLPLPLVLFAIITFFFWLLAHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDLGRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRATWRRLFSHKTIGA
>NZ_CP024885.1|WP_015369589.1|897460_898495_-|autoinducer-2-ABC-transporter-permease-LsrC
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTRNIDVSVGSTVGLCAIAVGVALNYGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSPLGWLVLALLLAGGWLLSRTAFGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLEMKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVLVLDGRLRQALARHQRALKYSRFQPGNKGSKQVARFPERKSKEVA

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Crispr_ID: NZ_CP024885_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024885_4

3179219-3179333

Orphan

Consensus_repeat	Method
CTACGCCTGGCAGGGCTACAGGTTTGAGCGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024885_4

>merge|NZ_CP024885|4|3179219-3179333|CRISPRCasFinder
CTACGCCTGGCAGGGCTACAGGTTTGAGCGGTTGGTAGCCCGGATAAGGCGTAAGCCGCTATCCGGGTTATCCCAGCCTGCACTACGCCTGGCAGGGCTACGGGTTTGAGCGGTT

>NZ_CP024885|4|4|3179219-3179333|CRISPRCasFinder
CTACGCCTGGCAGGGCTACAGGTTTGAGCGGTT	GGTAGCCCGGATAAGGCGTAAGCCGCTATCCGGGTTATCCCAGCCTGCA
CTACGCCTGGCAGGGCTACGGGTTTGAGCGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024885.1\|WP_015367550.1\|3180959_3181343_+\|biofilm-formation-regulator-BssR	unknown	unknown	gnl\|CDD\|183420
NZ_CP024885.1\|WP_015367545.1\|3185515_3186109_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|183335
NZ_CP024885.1\|WP_015367557.1\|3172906_3173848_+\|beta-aspartyl-peptidase	unknown	unknown	gnl\|CDD\|182319
NZ_CP024885.1\|WP_015367552.1\|3179376_3180702_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP024885.1\|WP_015367554.1\|3177337_3178258_+\|glutathione-ABC-transporter-permease-GsiC	unknown	unknown	gnl\|CDD\|185039
NZ_CP024885.1\|WP_015367562.1\|3166279_3167095_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|272905
NZ_CP024885.1\|WP_015367559.1\|3170736_3171492_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP024885.1\|WP_015367558.1\|3171491_3172727_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP024885.1\|WP_015367542.1\|3187686_3188499_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP024885.1\|WP_015367555.1\|3175749_3177291_+\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	unknown	unknown	gnl\|CDD\|185311
NZ_CP024885.1\|WP_032705602.1\|3183439_3184642_+\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|182189
NZ_CP024885.1\|WP_015367556.1\|3173862_3175716_+\|glutathione-ABC-transporter-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|182342
NZ_CP024885.1\|WP_015367553.1\|3178259_3179171_+\|glutathione-ABC-transporter-permease-GsiD	unknown	unknown	gnl\|CDD\|185040
NZ_CP024885.1\|WP_015367541.1\|3188498_3189701_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_CP024885.1\|WP_015367549.1\|3181447_3182551_+\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP024885.1\|WP_015367561.1\|3167245_3169678_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NZ_CP024885.1\|WP_015367560.1\|3169681_3170581_-\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP024885.1\|WP_015367548.1\|3182556_3183183_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP024885.1\|WP_015367546.1\|3184670_3185429_-\|DNA-binding-transcriptional-repressor-DeoR	unknown	unknown	gnl\|CDD\|182644
NZ_CP024885.1\|WP_015367543.1\|3186412_3187645_+\|multidrug-efflux-MFS-transporter-KdeA	unknown	unknown	gnl\|CDD\|185300

Protein	Function_ID	Function_description	E-value
NZ_CP024885.1\|WP_015367550.1\|3180959_3181343_+\|biofilm-formation-regulator-BssR	gnl\|CDD\|183420	PRK12302, bssR, biofilm formation regulator BssR.	9.21693e-68
NZ_CP024885.1\|WP_015367545.1\|3185515_3186109_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|183335	PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase; Provisional.	4.18189e-119
NZ_CP024885.1\|WP_015367557.1\|3172906_3173848_+\|beta-aspartyl-peptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0
NZ_CP024885.1\|WP_015367552.1\|3179376_3180702_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP024885.1\|WP_015367554.1\|3177337_3178258_+\|glutathione-ABC-transporter-permease-GsiC	gnl\|CDD\|185039	PRK15081, PRK15081, glutathione ABC transporter permease GsiC; Provisional.	0
NZ_CP024885.1\|WP_015367562.1\|3166279_3167095_-\|HAD-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	3.62148e-67
NZ_CP024885.1\|WP_015367559.1\|3170736_3171492_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	0
NZ_CP024885.1\|WP_015367558.1\|3171491_3172727_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP024885.1\|WP_015367542.1\|3187686_3188499_-\|HAD-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.51107e-66
NZ_CP024885.1\|WP_015367555.1\|3175749_3177291_+\|glutathione-ABC-transporter-substrate-binding-protein-GsiB	gnl\|CDD\|185311	PRK15413, PRK15413, glutathione ABC transporter substrate-binding protein GsiB; Provisional.	0
NZ_CP024885.1\|WP_032705602.1\|3183439_3184642_+\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|182189	PRK10001, PRK10001, serine-type D-Ala-D-Ala carboxypeptidase.	0
NZ_CP024885.1\|WP_015367556.1\|3173862_3175716_+\|glutathione-ABC-transporter-ATP-binding-protein-GsiA	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
NZ_CP024885.1\|WP_015367553.1\|3178259_3179171_+\|glutathione-ABC-transporter-permease-GsiD	gnl\|CDD\|185040	PRK15082, PRK15082, glutathione ABC transporter permease GsiD; Provisional.	0
NZ_CP024885.1\|WP_015367541.1\|3188498_3189701_-\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11417e-111
NZ_CP024885.1\|WP_015367549.1\|3181447_3182551_+\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	0
NZ_CP024885.1\|WP_015367561.1\|3167245_3169678_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
NZ_CP024885.1\|WP_015367560.1\|3169681_3170581_-\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	5.87925e-138
NZ_CP024885.1\|WP_015367548.1\|3182556_3183183_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.19123e-50
NZ_CP024885.1\|WP_015367546.1\|3184670_3185429_-\|DNA-binding-transcriptional-repressor-DeoR	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	0
NZ_CP024885.1\|WP_015367543.1\|3186412_3187645_+\|multidrug-efflux-MFS-transporter-KdeA	gnl\|CDD\|185300	PRK15402, PRK15402, MdfA family multidrug efflux MFS transporter.	0

>NZ_CP024885.1|WP_015367553.1|3178259_3179171_+|glutathione-ABC-transporter-permease-GsiD
MRLLNWRREAVINAMPGVKPGQIRTPWHEFWRRFRRQPVAMAAGLFVLLLIIVAIIAPWIAPYDAENYFDYDRLNEGPSMVHWFGVDSLGRDIFSRVLVGAQISLAAGVLAVLIGALIGTVLGLLAGYYEGWWDRITMRICDVLFAFPGILLAIAVVAVMGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDTTILFNHILPGTVSSIVVYFTMRIGVSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVMAPHVALFPAIAIFLTVLAFNLLGDGLRDALDPKIKG
>NZ_CP024885.1|WP_015367554.1|3177337_3178258_+|glutathione-ABC-transporter-permease-GsiC
MLNYVLKRLLGLIPTLFIVAVLVFLFVHMLPGDPARLIAGPEADAQVVAMVRQQLGLDQPLHVQFWHYITNVLQGDFGISMASRRPVTSEIASRFMPTLWLTLASMSWAVLFGMAAGIAAAVWRNRWPDRLGMALAVTGISFPAFALGMLLMQVFSVELGWLPTVGADSWRHYILPSLTLGAAVASVMARFTRASFVDVLHEDYMRTARAKGVSETLVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVMYAAINPAIRYK
>NZ_CP024885.1|WP_015367555.1|3175749_3177291_+|glutathione-ABC-transporter-substrate-binding-protein-GsiB
MTQPVTRKWLLALGIASALAATPAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLQNVLAESYTVSADGLVYTIKLHSGVKFQDGTDFNAEAVKANLDRASNPDNHLKRYNLYKNIASTEAVDPTTVKITLKQPFSAFINILAHPATAMISPAALKKYGKEIGFHPVGTGPYKLDTWNQTDFVKVSKFDGYWQPGLPKLDSITWRPVVDNNTRAAMLQTGEAQFAFPIPYEQAPLLAKNSKLELVASPSIMQRYISMNVTQKPFDNPKVREAINYAINRQALVKVAFAGYATPATGVVPPSIAYAQTYSAWPYDPAKARQLLKEAGFPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAQVEGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNPQVDKDLSEALKTTDAQQKTTLYKDAQDIIWKESPWVPLVVEKLVSAHSKNLTGFYIQPDTGFSFEQADLTQ
>NZ_CP024885.1|WP_015367556.1|3173862_3175716_+|glutathione-ABC-transporter-ATP-binding-protein-GsiA
MPQSHEIDEDDVLVVRDLNVAFSQQRQRVSAVRNLSFSLRRGETLAIVGESGSGKSVTALALMRLLDGAVSEVSSEALLLRRRNRQVIDINAQTAGQMRQVRGADVAMIFQEPMTSLNPVFTIGEQIAESIRLHQGLRHDEALREAKKMLERVRIPEAEAMLSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIAALQKEMAMGVMFITHDMGVVAEIADRVLVMYRGEAVESGRVEDIFRAPQHPYTRALLAAVPKLGSMRGSDLPRRFPLLNDGVTQQPEQNTVVAGKPILQVRDLVARFPIRGGILNRVTREVHAVEKVSFDLWPGETLSLVGESGCGKSTTGRALLRLVEAQGGSITFNGQRIDALSGGKLQTLRRDIQFIFQDPYASLDPRQTVGYSIMEPLRVHGLLEGDAARERVAWLLQRVGLEAEHAWRYPHEFSGGQRQRICIARALALNPKVVIADESVSALDVSIRAQIINLLLDLQREMGIAFLFISHDMAVVERISHRVAVMYRGRIVEIGPRRAVFENPQHPYTRKLMAAVPVADPAHRQPQRVLLSDELPGNIYKPGEEIDSAPLQLVAPGHYVAREPADVLSR
>NZ_CP024885.1|WP_015367557.1|3172906_3173848_+|beta-aspartyl-peptidase
MGKAVIAIHGGAGAISRAQMTQAREREYVAALSAIVDSGQKMLAAGASALDAVTEAVRLLEECPLFNAGIGSVFTHDQTHELDACVMDGYSLQAGSVAGVKHLRNPVLAARLVLEESPHVLLIGEGAEKFAASRGMALVENELFSTTERLLQLQQAKEGGEIILDHHAAPLDERHKMGTVGAVALDLAGNLAAATSTGGMTNKLPGRVGDSPVPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYGNLSLFEACERVVQEKLPALGGSGGLIAIDREGNVVLPFNSEGMYRAWCYAGDTPTIGIYRE
>NZ_CP024885.1|WP_015367558.1|3171491_3172727_-|molybdopterin-molybdotransferase-MoeA
MDFTAGLMPLDTALTQMLDRISPLQATETLPLLQAFSRVTAHDVVSPLDVPGFDNSAMDGYAVRLADLTDGAALPVAGKAFAGQPFHDAWPAGTCIRIMTGAPVPEGCDAVVMQEETEQTDAGVRFIAPVKAGQNIRRRGEDIANGAVVFPAGTRLTVAELPVLASLGIADVEVVRKVRVAVFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIPDDPAKLRDAFIAADQQADVVISSGGVSVGEADYTKTILEELGEIGFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNRGQTQPMRLRVRAASRLKKSPGRLDFQRGVLQRNPEGELVVSTTGHQGSHIFSSFSLGNCFIVLERERGNVEAGEWVEVEPFNHLFGGL
>NZ_CP024885.1|WP_015367559.1|3170736_3171492_-|molybdopterin-synthase-adenylyltransferase-MoeB
MAVELSDEEMLRYNRQIVLRGFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATIGQPKVDSARDALARINPHVRLVTIDAMLDDAALATQIADHHLVLDCTDNVAVRNQLNAGCFQHKTPLVSGAAIRMEGQISVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLVGTIGSLQAMEAIKLLTGYGTPAWGKIVMYDAMTCQFREMKLMRHPQCEVCGSR
>NZ_CP024885.1|WP_015367560.1|3169681_3170581_-|glycyl-radical-enzyme-activating-protein
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRTLDGLIIHRQNVNDAHIAALRHCCPTTALTVCGEEKSVADIMATVLRDKPFYDRSGGGITLSGGEPFMNPTLAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>NZ_CP024885.1|WP_015367561.1|3167245_3169678_-|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEANKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRNELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPSTLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>NZ_CP024885.1|WP_015367562.1|3166279_3167095_-|HAD-family-hydrolase
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHRIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAIAGFTTDDNNHDGALKVIQAVLDKTSPFND
>NZ_CP024885.1|WP_015367552.1|3179376_3180702_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSNVTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDNADMVIVNTCGFIDSAVQESLEAIGEALKENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYAPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLAEAKRLADAGVKELLVISQDTSAYGVDVKHRTGFHNGMPVKTSMVSLCEELAKLGIWVRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSADRQLARIKQWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGATANELADQVPEVVKEERWNRFMQLQQQISAERLQEKVGREIMVLVDEVDEEGAIGRSMADAPEIDGAVYLNGETNVKPGDVLRVKVEHADEYDLWGSRV
>NZ_CP024885.1|WP_015367550.1|3180959_3181343_+|biofilm-formation-regulator-BssR
MSVDRRYTNLLNKLINANIDLAAYLQLRKAKGYMSVSENDHLRDNLFELCHELRVHAPRLQHAIAPEEMEAFRLAGESVASAAVCLMSGHHDCPAYIAVNVEKLERCLSGLTMNIHILNNSAPMTHA
>NZ_CP024885.1|WP_015367549.1|3181447_3182551_+|PQQ-dependent-sugar-dehydrogenase
MRRYLKITLMTVLLPMAAMAAPRVEVLQDNLDHPWSLAFLPDNEGVLITLRGGELKRWQLDQGLSAPIRGVPKVWANGQGGLLDVVLAPDFAQSRRVWLSYAEAGDDGKAGTAVGYGRLSADLQNLEDFKTVFRQQPKLSTGNHFGGRMVFDGKGHLFIGLGENNQRPTAQDLDKLQGKVVRLTDQGTIPKDNPFVGRTGIRPEIWAYGVRNPQGMAMNPWSDTLWLNEHGPRGGDEINIPQAGKNYGWPLATHGINYSGQPIPEAKGKSAPNTEAPLHVWPASPALSGMAFYNASTFPQWRHKLFIGALKDESLIVLSVDGNTLSEETRLLKDRGKRIRDVRVGPDGYLYLLTDEPDGELLKVSPE
>NZ_CP024885.1|WP_015367548.1|3182556_3183183_-|glutathione-S-transferase-family-protein
MITLWGRNNSTNVKKVRWVLAELDLPYQQILAGLEYGLNHDPEYLAMNPNGLVPLLKDDANGLVLWESNAIIRYLAAQYGQNRLWVESPVQRAQGEKWMDWANATLSPAHRPVLMGLVRTPPDQRDPAAIEAGIHACEGLFAMLDDELAKHAWLSGDEFGLGDVAVAPFVYNLLSILDSWQPRPHLQRWYQQIQQRQAFRDVVMIPVT
>NZ_CP024885.1|WP_032705602.1|3183439_3184642_+|serine-type-D-Ala-D-Ala-carboxypeptidase
MTHDAFSLRGLAAGCALLLLVAPAVQAADQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDTVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDASIAIADYVAGSQDSFVNLMNGYAQKIGLTNTTFKTVHGLDAPGQFSTARDMALLTKAMIHDVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVSSATQGDMRLIAVVLGTKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFISQRVWFGDSNEVKLGAGEAGSVTIPRGQLKNLKASYNLTEPQLTAPLAKGQVVGTIDFKLNDKTIEQRPLIVMEDVKEGGFFSRMVDFVLMKLHGWFGSWFS
>NZ_CP024885.1|WP_015367546.1|3184670_3185429_-|DNA-binding-transcriptional-repressor-DeoR
METRRDERINQLIQALKRSDKLHLKEAASLLGVSEMTIRRDLNGHSGPVVLLGGYIVLEPRSATHYLLSDQKTRLVDEKRRAARHAAGLLEAHQMAFFDCGTTTPWIIDAIDNELPFTGVCYSLNTFLALQEKPLCRAILCGGEFHASNAIFLPLSLQDTLSHLSPDIAYYSAAGIDCEQGATCYNLEELPVKHWAMNNARYHVLVVDHSKFGKVRPARMGELSRFDVIASDVRPDDDLLALAKEKQISLLY
>NZ_CP024885.1|WP_015367545.1|3185515_3186109_-|undecaprenyl-diphosphate-phosphatase
MLENINYALFALINATPASSWWAIEVATFIAKDLIIIVPLLVVALWLWGPNQRQLVFKVMLALALSLSISWVIGHLFPHDRPFVDGVGYNFLHHAADDSFPSDHGTVIFTFALAFLFWHRVWSGALLLVIASAIAWSRVYLGVHWPLDMLGGLLAGMCGCLGSQLLWQSGGHGLYQRLQRLYRLCFSLPIRKGWVRG
>NZ_CP024885.1|WP_015367543.1|3186412_3187645_+|multidrug-efflux-MFS-transporter-KdeA
MQNYSLSGKRLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVQEFQVGNEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLTGVVWFIVTCLATLLAQTIEQFTLLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWVHMLPWEMMFVLFAVLAAISFVGLQRAMPETATRMGEKLSVKELGRDYRLVLKNLRFVAGALATGFVSLPLLAWIAQSPVIIISGEQATSYEYGMLQVPIFGALIAGNLVLARLTSRRSVRSLIIMGGWPIMFGLLLSAAATVVSSHAYLWMTAGLSFYAFGIGLANAGLVRLTLFASEMSKGTVSAAMGMLQMLIFTVGIELSKHAYELGGNGLFSLFNLLGGVLWLGLIIYFLKDKSVGSSQQA
>NZ_CP024885.1|WP_015367542.1|3187686_3188499_-|HAD-family-hydrolase
MSIKLIAVDMDGTFLSDAKTYNRPRFLAQYQRMREQGIRFVVASGNQYYQLISFFPELVDEIAFVAENGGWVVSGKEDIFNCQLPTTHFNAVVDHLQTLPHIEIIACGKRSAYTLNSYNDELKAVAAKYYHRLELVDDFNHLDDAILKFGLNVPDHLIPEIQPKLHAALGDMVTAVATGYGSIDLIIPGVHKANGLRILQERWGIDNHEVVAFGDSGNDIEMLQHAGFGFAMANAKAEVKAVASHHAPHNNEEGVLHIIDKVLNREAPFA
>NZ_CP024885.1|WP_015367541.1|3188498_3189701_-|MFS-transporter
MTAQTSRKALQLRLWALFMFFFIPGLLMASWATRTPAIRDLLTLSTAEMGMVLFGLSIGSMSGILCSAWLVKRFGTRKVIRTTMLCAVAGMLVLSLALWLASAPLFAFGLAIFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSFGTLVGAGIGMAVTGFGLPAAPHILIAALVAIAPILIAIRAIPDGTGKNAAESAHSEAKGLPVWRDVQLLLIGVIVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTLGRFTGGWFIDRYSRVTVVRASAVMGALGIGLIIFVDSTWVAGVSVLLWGLGASLGFPLTISAASDTGPDAPKRVSVVAITGYLAFLVGPPLLGFLGEHFGLRSAMMVVLGLVMVAALVARAVAKPQPEPVMENS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

231269 : 309858

Escherichia_phage(31.25%)

head,tail,terminase,capsid,integrase,lysis,portal,plate,tRNA

attL 273966:273979|attR 316703:316716

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015370282.1\|231269_232007_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_015370281.1\|232137_233469_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	1.5e-46	31.1
WP_002914084.1\|233514_233898_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
WP_015370280.1\|234210_234900_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	4.2e-56	52.6
WP_015703188.1\|234955_236026_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_015370277.1\|236230_236656_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	3.5e-13	39.0
WP_015703189.1\|236725_237424_+	DTW domain-containing protein	NA	NA	NA	NA
WP_015370275.1\|237459_240135_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_015370274.1\|240231_241587_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_015370273.1\|241629_241953_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_015370272.1\|241955_243254_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.5e-43	30.2
WP_032706294.1\|249287_251861_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.0e-127	35.4
WP_015370270.1\|251990_252722_-	polyphenol oxidase	NA	NA	NA	NA
WP_015370269.1\|252718_253699_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_015370268.1\|253830_254568_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002914111.1\|254840_255176_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100279143.1\|255290_255338_+	hypothetical protein	NA	NA	NA	NA
WP_015370267.1\|255439_256600_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_015370266.1\|256596_257469_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_015370265.1\|257536_258658_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_015370264.1\|258667_259738_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.7
WP_072205644.1\|259904_260591_+	YfiR family protein	NA	NA	NA	NA
WP_015370262.1\|260583_261807_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_015370261.1\|261819_262299_+	OmpA family protein	NA	NA	NA	NA
WP_015370260.1\|262304_263675_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_032706438.1\|263731_264181_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_032710447.1\|264414_265446_-\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	6.1e-176	87.0
WP_015370196.1\|265529_266030_-	hypothetical protein	A0A1D9C9Q4	Salinivibrio_phage	3.0e-48	62.7
WP_071647611.1\|266051_266390_-	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	1.7e-34	63.4
WP_032710448.1\|266398_267256_-	phage repressor protein CI	Q6K1G0	Salmonella_virus	5.2e-88	56.0
WP_015370193.1\|267380_267608_+	hypothetical protein	NA	NA	NA	NA
WP_015370192.1\|267639_268149_+	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	9.2e-85	93.5
WP_071647612.1\|268156_268357_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.0e-15	78.0
WP_015370191.1\|268437_268725_+	hypothetical protein	F1BUS4	Erwinia_phage	1.3e-24	57.0
WP_015370190.1\|268788_269022_+	DUF2732 family protein	Q6K1F6	Salmonella_virus	1.7e-22	75.3
WP_015370189.1\|269021_269243_+	TraR/DksA family transcriptional regulator	A0A218M4I6	Erwinia_phage	5.3e-29	86.3
WP_032710449.1\|269243_269540_+	DUF3850 domain-containing protein	A0A2D1GP44	Escherichia_phage	3.0e-11	45.5
WP_015370188.1\|269536_269818_+	hypothetical protein	A0A218M4I8	Erwinia_phage	1.4e-42	91.4
WP_032710487.1\|272175_272358_+	hypothetical protein	A0A0M5M1G5	Salmonella_phage	3.6e-23	88.3
WP_015370185.1\|272645_273134_+	hypothetical protein	NA	NA	NA	NA
WP_032710452.1\|273148_274240_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
273966:273979	attL	NA	NA	NA	NA
WP_015370183.1\|274910_275957_-\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	1.4e-188	94.0
WP_032710453.1\|275959_277729_-\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	0.0e+00	97.3
WP_015370180.1\|277894_278749_+\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	1.7e-152	94.0
WP_032710454.1\|278825_279893_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	4.6e-179	89.6
WP_015370178.1\|279897_280647_+\|terminase	terminase endonuclease subunit	O80305	Escherichia_phage	4.9e-111	90.4
WP_015370177.1\|280740_281250_+\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	1.5e-87	94.7
WP_015370176.1\|281249_281453_+\|tail	tail protein	A0A0M3ULF4	Salmonella_phage	8.3e-29	91.0
WP_015370175.1\|281455_281752_+\|lysis	phage lysis protein S	A0A0M5M1H1	Salmonella_phage	1.1e-45	95.9
WP_015370174.1\|281738_282236_+	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.1e-87	93.3
WP_015370173.1\|282232_282646_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.6e-63	94.2
WP_001384078.1\|282617_282791_+	hypothetical protein	O80311	Escherichia_phage	6.2e-25	98.2
WP_015370172.1\|282753_283221_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	2.3e-82	97.4
WP_015370171.1\|283213_283675_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.1e-52	76.2
WP_015370170.1\|283726_285085_+	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_032710455.1\|285158_285800_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	6.3e-99	85.9
WP_015370168.1\|285796_286144_+\|plate	phage baseplate assembly protein	A0A218M4K8	Erwinia_phage	3.1e-52	92.2
WP_015370167.1\|286150_287059_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	2.6e-154	96.4
WP_015370166.1\|287051_287660_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.6e-107	93.1
WP_015370165.1\|287656_289132_+\|tail	phage tail fiber protein	M1TAS6	Escherichia_phage	1.2e-108	49.0
WP_015370164.1\|289131_289749_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.9e-53	55.2
WP_015370163.1\|289880_291059_+\|tail	phage tail sheath protein	Q37844	Escherichia_phage	6.0e-212	94.9
WP_015370162.1\|291074_291593_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	9.4e-93	99.4
WP_015370161.1\|291655_291991_+\|tail	phage tail assembly protein	Q37846	Escherichia_phage	6.1e-45	86.2
WP_071647614.1\|291987_292143_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	4.8e-21	94.1
WP_015370159.1\|292135_294577_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	88.6
WP_015370158.1\|294591_295077_+\|tail	phage tail protein	O80317	Escherichia_phage	5.0e-80	94.3
WP_015370157.1\|295073_296237_+	phage late control D family protein	Q6K1G4	Salmonella_virus	2.8e-201	93.5
WP_071647615.1\|296315_296534_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	2.0e-33	88.9
WP_002914145.1\|296693_297041_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_008806092.1\|297080_297848_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015703198.1\|297879_298428_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_015370257.1\|298446_298695_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_020078159.1\|298933_300298_-	signal recognition particle protein	NA	NA	NA	NA
WP_015703199.1\|300464_301256_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_026612238.1\|301273_302560_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_015370253.1\|302663_303254_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_015370252.1\|303377_304256_+	NAD(+) kinase	NA	NA	NA	NA
WP_015370251.1\|304342_306004_+	DNA repair protein RecN	NA	NA	NA	NA
WP_015370250.1\|306151_306490_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_015370249.1\|306553_306844_-	RnfH family protein	NA	NA	NA	NA
WP_026612237.1\|306833_307310_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_015370247.1\|307424_307907_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	46.8
WP_015370148.1\|308616_309858_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	3.7e-103	48.0
316703:316716	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3348312 : 3364878

Klebsiella_phage(33.33%)

holin,integrase

attL 3342102:3342116|attR 3373865:3373879

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3342102:3342116	attL	NA	NA	NA	NA
WP_032710377.1\|3348312_3349341_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.7e-82	50.0
WP_071609812.1\|3349324_3349558_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_080473201.1\|3349627_3351166_-	exonuclease	S4TNL0	Salmonella_phage	9.9e-82	62.9
WP_032710172.1\|3351055_3351421_+	hypothetical protein	NA	NA	NA	NA
WP_032710174.1\|3351413_3352082_+	morphogenetic protein	A0A077KCB2	Edwardsiella_phage	2.6e-55	49.6
WP_032710176.1\|3352314_3352572_+	DNA polymerase III subunit theta	A0A077SLL5	Escherichia_phage	7.8e-24	77.3
WP_125961803.1\|3352953_3353526_+	hypothetical protein	NA	NA	NA	NA
WP_125961801.1\|3353537_3353771_+	hypothetical protein	NA	NA	NA	NA
WP_032710180.1\|3353773_3354166_+	hypothetical protein	NA	NA	NA	NA
WP_032710182.1\|3354303_3354633_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.1e-27	60.0
WP_032710185.1\|3354785_3355019_+	DinI family protein	K7PM44	Enterobacteria_phage	8.9e-27	71.4
WP_048338985.1\|3355361_3355754_+	DNA-binding protein	K7PHB4	Enterobacterial_phage	4.8e-17	44.3
WP_032710186.1\|3355750_3355954_+	hypothetical protein	NA	NA	NA	NA
WP_032710187.1\|3355953_3356985_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.2e-96	50.1
WP_032710384.1\|3356998_3357601_+	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-79	71.1
WP_032705626.1\|3358677_3358989_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.1e-43	84.5
WP_032705627.1\|3358985_3359528_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	5.1e-73	71.3
WP_032710188.1\|3359524_3359872_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.2e-37	76.5
WP_032705629.1\|3359868_3360132_+	hypothetical protein	NA	NA	NA	NA
WP_072201313.1\|3360121_3360280_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	5.3e-15	90.5
WP_032707023.1\|3361158_3361446_+	hypothetical protein	Q6UAS3	Klebsiella_phage	1.3e-11	43.8
WP_125961794.1\|3364278_3364878_+	hypothetical protein	A0A1X7QGJ8	Escherichia_phage	8.2e-32	37.3
3373865:3373879	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4439120 : 4476077

Salmonella_phage(54.76%)

integrase,lysis

attL 4469423:4469437|attR 4477601:4477615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032710244.1\|4439120_4440002_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	3.6e-28	60.2
WP_032710246.1\|4440001_4440775_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	9.7e-78	55.6
WP_032710247.1\|4440771_4441971_-	bacteriophage protein	A0A0M4RD32	Salmonella_phage	4.4e-154	70.5
WP_032710248.1\|4441970_4442324_-	bacteriophage protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_032710249.1\|4442325_4442979_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	2.2e-70	56.3
WP_032710251.1\|4443049_4444276_-	chromosome segregation ATPase	Q9MC01	Enterobacteria_phage	9.3e-99	62.2
WP_086557771.1\|4444366_4444675_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	7.6e-34	85.7
WP_032710252.1\|4444710_4445772_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.6e-142	75.5
WP_032710253.1\|4445774_4446077_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.0e-35	67.0
WP_032710255.1\|4446076_4446664_-	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	1.1e-73	77.7
WP_032710257.1\|4446663_4448580_-	bacteriophage protein	A0A0M4REK7	Salmonella_phage	3.1e-226	64.4
WP_032710259.1\|4448569_4448722_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-17	84.0
WP_032710261.1\|4448757_4449243_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	7.8e-49	64.1
WP_032710262.1\|4449246_4449687_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	2.7e-64	83.6
WP_032710263.1\|4449698_4450850_-	DUF3383 family protein	A0A0M4RD26	Salmonella_phage	1.0e-179	82.5
WP_032710264.1\|4450851_4451403_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	6.5e-44	48.6
WP_032710265.1\|4451395_4451800_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	9.7e-45	72.3
WP_032710266.1\|4451799_4452306_-	hypothetical protein	NA	NA	NA	NA
WP_032710268.1\|4452305_4452722_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	5.5e-43	64.4
WP_032710270.1\|4452690_4452951_-	hypothetical protein	NA	NA	NA	NA
WP_032710272.1\|4452996_4453938_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.1e-139	77.1
WP_032710274.1\|4453949_4454444_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.5e-52	65.8
WP_032710276.1\|4454455_4455655_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.8e-107	55.6
WP_032710277.1\|4455916_4456465_-	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	1.1e-48	56.1
WP_032710279.1\|4456520_4457972_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	4.8e-195	69.6
WP_032710280.1\|4457974_4459588_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	1.1e-275	82.9
WP_032710281.1\|4459786_4460260_-	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	4.7e-51	67.1
WP_045368486.1\|4460291_4460948_-	hypothetical protein	I6S676	Salmonella_phage	4.8e-110	90.2
WP_032710284.1\|4461244_4461706_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.8e-39	59.1
WP_032710285.1\|4461702_4462200_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	82.4
WP_049046135.1\|4462199_4462502_-	hypothetical protein	O64361	Escherichia_phage	4.0e-35	75.2
WP_032710286.1\|4462828_4463437_-	hypothetical protein	H9C175	Pectobacterium_phage	1.3e-53	52.0
WP_032710288.1\|4463433_4464078_-	DNA methyltransferase	G8C7S6	Escherichia_phage	4.3e-87	74.0
WP_032710291.1\|4464074_4464377_-	DUF968 domain-containing protein	A0A2I7QXN1	Vibrio_phage	3.1e-24	57.6
WP_032710292.1\|4464830_4465064_-	DinI family protein	H6WRY5	Salmonella_phage	3.4e-26	70.1
WP_032710294.1\|4465217_4465547_-	hypothetical protein	K7PGV5	Enterobacterial_phage	5.1e-28	64.9
WP_032710400.1\|4465628_4465898_-	hypothetical protein	S4TNF2	Salmonella_phage	1.0e-34	80.2
WP_032710297.1\|4467062_4467488_-	HNH endonuclease	C6ZR29	Salmonella_phage	4.2e-59	81.5
WP_050483361.1\|4467487_4467919_-	hypothetical protein	NA	NA	NA	NA
WP_050483363.1\|4468196_4468757_-	hypothetical protein	NA	NA	NA	NA
WP_032710299.1\|4468753_4469542_-	hypothetical protein	C7BGF1	Burkholderia_phage	2.6e-62	52.5
4469423:4469437	attL	NA	NA	NA	NA
WP_126000396.1\|4469761_4470157_-	hypothetical protein	NA	NA	NA	NA
WP_050483364.1\|4470183_4470456_-	hypothetical protein	NA	NA	NA	NA
WP_032710303.1\|4470469_4471504_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	7.7e-30	50.4
WP_032710307.1\|4471769_4472183_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	7.6e-45	70.5
WP_032710308.1\|4472182_4472434_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	5.6e-19	56.6
WP_032710309.1\|4472541_4472943_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	1.9e-13	39.3
WP_032710310.1\|4473397_4473679_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_126000395.1\|4473774_4473993_+	hypothetical protein	NA	NA	NA	NA
WP_032710312.1\|4474581_4474797_+	hypothetical protein	NA	NA	NA	NA
WP_032710313.1\|4474796_4476077_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	4.6e-117	50.0
4477601:4477615	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4777667 : 4842003

Aeromonas_phage(17.39%)

head,terminase,integrase,coat,holin,protease

attL 4779763:4779778|attR 4852550:4852565

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015366028.1\|4777667_4778552_-\|protease	protease HtpX	NA	NA	NA	NA
WP_015705936.1\|4778787_4780836_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	2.2e-84	33.3
4779763:4779778	attL	NA	NA	NA	NA
WP_015366026.1\|4780855_4781539_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_015366025.1\|4781636_4782134_-	GAF domain-containing protein	NA	NA	NA	NA
WP_015705937.1\|4782267_4783551_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_015366023.1\|4783519_4786153_+	PqiB family protein	NA	NA	NA	NA
WP_032707361.1\|4786240_4787674_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_015705939.1\|4787786_4788026_+	YebV family protein	NA	NA	NA	NA
WP_015366020.1\|4788127_4788319_+	YebW family protein	NA	NA	NA	NA
WP_015366019.1\|4788315_4788972_-	protein-serine/threonine phosphatase	K7P6H8	Enterobacteria_phage	1.0e-59	53.2
WP_015366017.1\|4789186_4790086_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_015366016.1\|4790204_4790348_+	Ecr family regulatory small membrane protein	NA	NA	NA	NA
WP_015705943.1\|4790832_4791405_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015366014.1\|4791426_4791945_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015366013.1\|4791962_4792712_+	molecular chaperone	NA	NA	NA	NA
WP_032705949.1\|4792714_4795039_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_072207417.1\|4795051_4796005_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_032716195.1\|4796407_4797841_-	hypothetical protein	NA	NA	NA	NA
WP_050595190.1\|4797840_4800108_-	right-handed parallel beta-helix repeat-containing protein	A0A2H4N7A3	Pectobacterium_phage	3.8e-37	69.1
WP_032716196.1\|4800120_4801407_-	hypothetical protein	NA	NA	NA	NA
WP_032716197.1\|4801408_4801996_-	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	2.5e-33	41.8
WP_032716198.1\|4801988_4803221_-	bacteriophage protein	A0A077KGW9	Edwardsiella_phage	1.4e-110	52.7
WP_032708550.1\|4803228_4803585_-	hypothetical protein	NA	NA	NA	NA
WP_032716200.1\|4803650_4804307_-	hypothetical protein	NA	NA	NA	NA
WP_032716201.1\|4804309_4804897_-	hypothetical protein	A1Z003	Burkholderia_virus	8.9e-07	27.5
WP_032716202.1\|4804874_4805756_-	hypothetical protein	NA	NA	NA	NA
WP_032708555.1\|4805752_4806058_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	8.7e-22	47.5
WP_032716203.1\|4806059_4806899_-	hypothetical protein	NA	NA	NA	NA
WP_032716204.1\|4806901_4808800_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	7.5e-39	58.2
WP_032708558.1\|4808780_4808960_-	hypothetical protein	NA	NA	NA	NA
WP_032708559.1\|4809001_4809478_-	hypothetical protein	A0A068CGG2	Acinetobacter_phage	3.2e-07	30.1
WP_032716205.1\|4809485_4809929_-	hypothetical protein	NA	NA	NA	NA
WP_032716206.1\|4809929_4811411_-	DUF3383 domain-containing protein	K4PB47	Acinetobacter_phage	1.3e-54	31.6
WP_032708562.1\|4811411_4811966_-	hypothetical protein	A0A077KC88	Edwardsiella_phage	1.6e-13	30.6
WP_032708564.1\|4811947_4812316_-	hypothetical protein	NA	NA	NA	NA
WP_032716207.1\|4812312_4812882_-	hypothetical protein	H9C0W2	Aeromonas_phage	7.0e-17	32.9
WP_047055412.1\|4812887_4813328_-	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	5.4e-17	44.1
WP_125961763.1\|4813330_4813843_-	hypothetical protein	H9C0V9	Aeromonas_phage	8.3e-09	38.9
WP_032716211.1\|4813844_4814888_-	hypothetical protein	A0A219YBB0	Aeromonas_phage	1.4e-79	46.4
WP_032708571.1\|4814880_4815372_-	hypothetical protein	A0A219YBF2	Aeromonas_phage	2.1e-33	51.6
WP_032716212.1\|4815375_4816737_-	DUF2213 domain-containing protein	A0A219YBB9	Aeromonas_phage	2.1e-67	39.8
WP_086538059.1\|4816749_4817565_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	9.3e-55	42.1
WP_032716213.1\|4817494_4819027_-	DUF1073 domain-containing protein	H9C0V0	Aeromonas_phage	6.0e-103	45.1
WP_032708574.1\|4819028_4820543_-\|terminase	phage terminase large subunit	Q7Y5U7	Haemophilus_phage	5.1e-131	50.2
WP_032716214.1\|4820496_4821543_-\|terminase	terminase	A0A0U2RXW9	Escherichia_phage	3.4e-65	49.6
WP_080473229.1\|4821571_4821802_-	hypothetical protein	A0A076G6T1	Escherichia_phage	2.2e-06	58.8
WP_080957999.1\|4821800_4822016_+	hypothetical protein	NA	NA	NA	NA
WP_032716217.1\|4822144_4822393_-	hypothetical protein	NA	NA	NA	NA
WP_032716259.1\|4822385_4822916_-	DUF2514 domain-containing protein	A0A291AXG6	Shigella_phage	3.6e-07	29.7
WP_032716218.1\|4822919_4823330_-	structural protein	A0A0A0RQM4	Escherichia_phage	1.1e-40	60.3
WP_032708581.1\|4823333_4823681_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.0e-39	74.8
WP_032716220.1\|4823966_4824539_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.0e-55	57.9
WP_032716221.1\|4824535_4824829_-	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	2.2e-38	78.5
WP_032716222.1\|4824825_4825419_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.5e-49	51.8
WP_032708586.1\|4825489_4825672_-	hypothetical protein	NA	NA	NA	NA
WP_032708588.1\|4825763_4826000_-	DinI-like family protein	H6WRY5	Salmonella_phage	2.1e-23	67.1
WP_032716223.1\|4826153_4826483_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.0e-28	64.9
WP_032716225.1\|4826564_4826834_-	hypothetical protein	S4TNF2	Salmonella_phage	6.6e-34	79.1
WP_032716226.1\|4826906_4827179_-	hypothetical protein	A0A2H4FNB3	Salmonella_phage	5.0e-21	66.7
WP_080473220.1\|4827171_4827606_-	DUF551 domain-containing protein	A0A193GYX5	Enterobacter_phage	4.1e-09	37.8
WP_071647704.1\|4828078_4828396_-	hypothetical protein	Q5G8V1	Enterobacteria_phage	2.1e-18	73.3
WP_032716227.1\|4828392_4828689_-	antitoxin PHD	NA	NA	NA	NA
WP_047075524.1\|4829332_4830121_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.2e-62	52.5
WP_032716229.1\|4830146_4830896_-	ATP-binding protein	H6WRX8	Salmonella_phage	4.6e-109	75.9
WP_080687393.1\|4830898_4831705_-	hypothetical protein	A0A2H4JDG9	uncultured_Caudovirales_phage	7.4e-28	59.2
WP_032716230.1\|4831769_4832195_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_032708597.1\|4832178_4832406_-	transcriptional regulator	A5VW97	Enterobacteria_phage	4.8e-09	47.5
WP_032708599.1\|4832483_4832891_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.0e-21	43.5
WP_032708600.1\|4833332_4833539_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	1.2e-14	56.2
WP_071609884.1\|4833610_4833916_+	hypothetical protein	NA	NA	NA	NA
WP_032716231.1\|4833945_4834242_+	hypothetical protein	NA	NA	NA	NA
WP_032716232.1\|4834253_4836590_+	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-97	61.9
WP_032716233.1\|4836586_4837090_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.6e-25	44.8
WP_125961766.1\|4837119_4837512_+	hypothetical protein	NA	NA	NA	NA
WP_071609883.1\|4837578_4837851_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.5e-12	40.9
WP_032708609.1\|4837825_4838905_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-96	50.1
WP_015366010.1\|4839296_4839638_-	YebY family protein	NA	NA	NA	NA
WP_032705951.1\|4839651_4840521_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_015366008.1\|4840524_4840899_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_015366007.1\|4841033_4841264_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.5e-15	57.4
WP_015366006.1\|4841343_4842003_+	exodeoxyribonuclease X	A0A0H4IT92	Pseudoalteromonas_phage	7.6e-15	30.1
4852550:4852565	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024885

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection