CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP024894	Amycolatopsis sp. AA4 chromosome, complete genome	12 crisprs	csa3,WYL,DEDDh,cas4,DinG,RT,casR,cas3	1	2	1
NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	1 crisprs	NA	0	2	0
NZ_CP024896	Amycolatopsis sp. AA4 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024894_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_1

1079512-1079704

Orphan

Consensus_repeat	Method
CGAGAGGAGCCGCCGCCGTGCGTGACAACAACTGGACCCGATGAGCCGCCCGAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP024894_1

>merge|NZ_CP024894|1|1079512-1079704|PILER-CR
CGAGAGGAGTCGCGCCGTGCGTGACAACAACTGGACCCGCTGAACCCGGTCGCCCACCAACCACCGAGCCGAAAGGAACCGCCGCGTGCGTGACAACAACTGGACCCGATGAGCCGCCCGACCACCGTCCATCAACTCGCGAGAGGAGCCGCCGCCATGCGTGACAACAACTGGACCCGATGAGCCGCCCGAC

>NZ_CP024894|1|1|1079512-1079704|PILER-CR
CGAGAGGAGTCGCGCCGTGCGTGACAACAACTGGACCCGCTGAACCCGGTCGCC	CACCAACCACCGAGCCGAAAGGAACC
GCCGCGTGCGTGACAACAACTGGACCCGATGAGCCGCCCGACCACCGTCCATCA	ACTCGCGAGAGGAGCCG
CCGCCATGCGTGACAACAACTGGACCCGATGAGCCGCCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_037712614.1\|1077274_1078495_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP024894.1\|WP_037712608.1\|1073432_1073735_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP024894.1\|WP_009073437.1\|1075980_1076736_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP024894.1\|WP_037712616.1\|1079933_1081184_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP024894.1\|WP_009073448.1\|1083966_1085184_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|179663
NZ_CP024894.1\|WP_009073426.1\|1070865_1072251_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP024894.1\|WP_009073438.1\|1076824_1077241_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319924
NZ_CP024894.1\|WP_100266708.1\|1083289_1083868_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP024894.1\|WP_100266707.1\|1081290_1082829_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP024894.1\|WP_009073428.1\|1072387_1073422_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP024894.1\|WP_009073421.1\|1069047_1069917_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP024894.1\|WP_009073453.1\|1086001_1086889_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP024894.1\|WP_009073466.1\|1092205_1092658_+\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_CP024894.1\|WP_037712612.1\|1075015_1075858_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009073462.1\|1090042_1091536_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP024894.1\|WP_009073458.1\|1087930_1089322_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP024894.1\|WP_009073464.1\|1091607_1092156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_037712611.1\|1073910_1074927_+\|S1-family-peptidase	unknown	unknown	gnl\|CDD\|367281
NZ_CP024894.1\|WP_009073424.1\|1069918_1070869_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP024894.1\|WP_037712618.1\|1089752_1090046_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_037712614.1\|1077274_1078495_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.81053e-55
NZ_CP024894.1\|WP_037712608.1\|1073432_1073735_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.09635e-25
NZ_CP024894.1\|WP_009073437.1\|1075980_1076736_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.6028e-37
NZ_CP024894.1\|WP_009073438.1\|1076824_1077241_-\|glyoxalase	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.20548e-22
NZ_CP024894.1\|WP_100266707.1\|1081290_1082829_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.52625e-106
NZ_CP024894.1\|WP_009073448.1\|1083966_1085184_+\|DNA-polymerase-IV	gnl\|CDD\|179663	PRK03858, PRK03858, DNA polymerase IV; Validated.	0
NZ_CP024894.1\|WP_009073426.1\|1070865_1072251_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.45851e-44
NZ_CP024894.1\|WP_037712616.1\|1079933_1081184_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.75993e-46
NZ_CP024894.1\|WP_100266708.1\|1083289_1083868_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	8.32938e-11
NZ_CP024894.1\|WP_009073428.1\|1072387_1073422_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.26104e-101
NZ_CP024894.1\|WP_009073421.1\|1069047_1069917_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.18256e-76
NZ_CP024894.1\|WP_009073453.1\|1086001_1086889_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.02289e-52
NZ_CP024894.1\|WP_009073466.1\|1092205_1092658_+\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	5.22034e-25
NZ_CP024894.1\|WP_009073462.1\|1090042_1091536_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	7.27685e-20
NZ_CP024894.1\|WP_009073458.1\|1087930_1089322_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.87484e-113
NZ_CP024894.1\|WP_037712611.1\|1073910_1074927_+\|S1-family-peptidase	gnl\|CDD\|367281	pfam02983, Pro_Al_protease, Alpha-lytic protease prodomain.	0.00338677
NZ_CP024894.1\|WP_009073424.1\|1069918_1070869_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.83237e-80

>NZ_CP024894.1|WP_037712614.1|1077274_1078495_-|GGDEF-domain-containing-protein
MYVLLVNVVAVGTTVATAWLAPVHQIDLIRFGVLAVCAALAIEATRHIERQREYSRAPTVAYVDTKAVWSIAAVVALPAILASAMVVLTYAVAWWRIWPRERPVLPHRWIFSCATVLCGTQAAVAVLALGMHEYPGGLAGGFGPGLLDLVVFVLAAGLRWAINTALVMVAIALSSPPRSFADLFSGFGDQLLEAGAIGLGLVTAALLLLANPLILAGVVIALVALHRGLLLTQFQRDARTDVTTGLATKRWWRTVTERYLERARANQDSVGVLLLDLDHFKAINDTYGHPTGDLVLREIALSLRDEVREQDVCGRWGGEEFAIALPDIPSAEHLGHIADRIRRRIPQVVVALPDQDSVISDLTVSIGCALYPAEHLASVDDVLVAADAALYRAKQAGRNRVELASA
>NZ_CP024894.1|WP_009073438.1|1076824_1077241_-|glyoxalase
MDWTLEVVVVPVTDVDRAKAFYVDQVGFRLDHDISPGPGLRLVQLTPPGSGCSIVLGKGMVPDMPPGSLKGLQLVVADVRKAREELVERGVEVGEVQLYGPDPGTGALEDLDNIGFIHFSDPDGNSWSVQQISARAKG
>NZ_CP024894.1|WP_009073437.1|1075980_1076736_+|SDR-family-oxidoreductase
MLLEGKNAVVYGAGGGIGGAFARAFAEEGARVFLAGRTREKLDRVADEIRAAGGTADVAVVDALDEKSVDAHADAVVETAGSLDISVNVISHGDVQGTPMIEMSLADYEQPVVNGVRTTFLTMRAAGRHMKRQGNGVVLLFGGDGDPVRNHAVGGLQVGFSALEAMRRQLAAELGRYGVRTVTLRTGGVPETIPADFPGAEALAAELAEPTMLGRTATLADVGAVAAFVASDRARTMTAATVNVSCGALVD
>NZ_CP024894.1|WP_037712612.1|1075015_1075858_+|hypothetical-protein
MKPSPARTLWNTIEPIHAVVYFAPEPAAAAKDVGLRGWWMGYFAGRAAPLGPIGPEPVTSMFFGFAPRMVERALPDAWTFASPADVLRTRVEAVEAALARLLGPDTVDELAALLEQAAAACSFDARPLAAAWSAVPRPDRPLARLWLATAVLREHRGDGHVLAAVASGLTGLETTLTHIATGATAREQVQRARGWTDEEWAEATATLIDRGLLDAEGLTPAGAEVRRTIEETTDRLAAAPLEALGPSGVDRVLELAVPLSRRIIDSGGVPVPNPMGVGRP
>NZ_CP024894.1|WP_037712611.1|1073910_1074927_+|S1-family-peptidase
MTSRKTLVAGCTALSAAALTAGMCVNAASASPMAFAQMQAKAITQATQIADTLGAGNGGIYLERGKAVLNVTDAAAQEKAKAAGFATKLVKHSFTALTGAKNQMDTVKNVPQTSWGIDTKTNQVVVKIYDSASQATKDKVAAAAAKLGDAARVEHRSGKLATYIADGDSINNGQFTCSLGFNVTRGGQPYMLTAGHCTNEGGTWSGGDVSGAQVVESDCPGADSGLLTRPNGTGPGAINTGQQITSAASPTVGEQIQKMGQTTGGGSGEVTSVDESVNFDVGVLNHEFGTTAHTDHGDSGGPAYDGDKGLGTLSGGDTQTSYFYPLTLELQSYGLELA
>NZ_CP024894.1|WP_037712608.1|1073432_1073735_+|N-acetyltransferase
MSEEEPRVSRNDSENRYEVYADGKLAGFAEYTLKGTETVFTHTEIGDEFGGRGLGKVLAKAALDDVVARGGVIVPVCPFIAGYLRKNEGYAEHVRWPGQH
>NZ_CP024894.1|WP_009073428.1|1072387_1073422_+|LacI-family-transcriptional-regulator
MAATLRDVADRAQVSVRTVSNVVSGYEHVSEKMRQRVLRAIEELGYIPNPVARTLRTGKTGLLSLVVPEIDVPYFSQLAREVIDAAADLGFQVMIDQTGHDHERERQLLRGGGRRNLFDGMLFAPLATGDELRDVDPARSSPLILLGEHVFDHRFDHVAIDNVVAAHDATTHLLERGRTRIAALGAQPKEMYSTPLQRTEGFRKALDEHGLEPVNALQATAAHYGRADGYAATASLLRESPRPDAIFCYSDLLAMGAIRAVFDAGLRVPEDVAIIGIDDIEEGRYSRPSLSTVSLDTPFIARTAVSRLAARIENPELPAEEFVAPHKLLARESTGAGSRTADSV
>NZ_CP024894.1|WP_009073426.1|1070865_1072251_-|extracellular-solute-binding-protein
MNPTLRRSGRTARLRVRRGGVAAAATLLVAGLSGCGPDISSDGPAADNAVLQAPSEDSPKGEITVWDRSGDLYKVFDSAIKKFTAKYPGVTVKHEAVDIDSKLQNTLITGTDVPDGVFLDDAKVGRYVSHLWNLKDVLAPYTKDIAKQKVDVNTVGGGIYGVPFDLDPGLLFYNAKALSAAGIDPNGIKTYDDLLAAAKKYQQFKPGAKPIHLEQDAFNSQLQLEMFASQLGTGLAGPDGKLRLNSPQYHQILTWLDTVRKEGLGTRAEYLKPSDVGALDSADEVFYPWAIWFDFAPQQQLTASKGDWRAMPLPAWTAGGARSGAMGGSSFVIPKDAKNPKLAWLLYRFLMFDQAGYTAVYGPNAVYPGGLNTSVPAYLPAADPAKPLFRPIDAMGGQDVWKTAVEAGREIPGGAPIPAWWSGAVDYLGTDLQKMLDGTLTPQQVIDKAGQDIQTNLIDRK
>NZ_CP024894.1|WP_009073424.1|1069918_1070869_-|sugar-ABC-transporter-permease
MTTRSASPAAKVYREPAVEPRSRAPRRRRHTLPWRRLLAPYVFVLPFVLVFLAFSVYPLFFTLRLSFTDWHGSGAAHWIGFDNYRYLLTSNGFWASLGNSGVLWLLIVPAQLVLAVLVAVLLNAIKRLRGFYRVAFVVPFVTPLVAVAQIWIVLFDQDNGAVNAMLGAVGLPPVGWLVTSGWAKPTLALLFLWKTTGFVVLIVLSGLQQIDRGLYEAAALDGAGRTRQLWSITVPLLRRSLMFSLVLQTLAVFQMFAEPYVVTKGGPYTSTTTAGLYLYNHITRADLGTGAANSFLLVIVVMAVSLLFVRLLRAED
>NZ_CP024894.1|WP_009073421.1|1069047_1069917_-|carbohydrate-ABC-transporter-permease
MTTLGVRPRRTRPLLGSHAFLLVLTVALLAPVVWAILSSFKPAGEIIRDPLGFDPATLTLANFRGMFQDVPIGSGFINTGLVLVAKGAITMFCAPLAAYAFAKYRFAGRNLIFGAVLLTLMLPTIVLVIPLLLEMKELGWVNTYQALILPGSVDAFAIFWMRQVIAAVPDELLDAARVDGCGEFGIFWRVVVPAIRPGLAGLGVLTIMNIYNDFVWPVVAASSSRMATLQVVLSTLAQNISGNRVGADYATVTGELLAAASVALVPLLILFIVLQKHFINGILAGSVKG
>NZ_CP024894.1|WP_037712616.1|1079933_1081184_-|MFS-transporter
MTTTAPSFRSVFRMGEFRALWLAHVLSVAGDQLARVALTVLVFNRTASAGWAAGTYALTYLPDLLGGALGGLADRFPRRTVLVVADVVRALLVALMAIPGMPWPVAAGLLVVVQLAAGPFQAARQAVLPDLLGEEKLATGQAILSSTYQAALVIGFGAGAAVVAWLGVSGALWADAVTFAVSAAALRWGLRLYPVSKVAEHAPQWASLKAGCRLVARDRKLRSLLAIACCCGFYVVPEGLAVPVAAQLGGTGVLGWLLVANPVGTLLGALLISRLPRARQVRWLGPLAVASSLVLLPTGWTPALPVVVAVWTVSGMFSAHDLITQVQYSLAAPPEQRGQVIGVAIAALRAAQGLTIAAAGALALAFAPTTVVAIAAVAGAGCAAAAGIAWTRAVRADRAVRPRRSPLDEATPPPAP
>NZ_CP024894.1|WP_100266707.1|1081290_1082829_+|serine/threonine-protein-kinase
MDDVAPKGFPLTEESRQVAGRYELVELIGSGAMGMVWRGEDKILGRVVAVKELLMPVNQGEDKVEEARNRAMREARIAARLQHPNAISVFNVVEHEDRPWLIMEYLPSRSLAVKLREDGPLTVDEAIPFGVQLAGVLAAAHRAGIVHRDVKPGNVLLGDDGTTVKVTDFGISRAVGDVTLTATGEISGTPAFLAPEVARGEEATFASDVFALGATLYMAVEGEPPFGTADNAIALLYRVSSGSINPPKQAGKLEPLLLKLLELKPEDRPSMAEVVTELRKLDGGVTPVAAVPEPPTLPDAEPPAVPTTVAVPAAGAAVAPAGSAAAAPPAGSDRRRRGMIFAGAGALLVVLAVIVTVLLTRNHGEENPAANPPPAGTSSAASSAPAPSSASQPSPSTTPSSSALPTSSSASNSPDAMASALRTYFSYLPSNLESGWAMLSDGFRAKKNQTFERYKSWWSQFSSVTANDVQVTGENTLTAKITYHRASGGTTTEFHHYTMSQRNGAWQIEVES
>NZ_CP024894.1|WP_100266708.1|1083289_1083868_-|HAD-family-hydrolase
MRLVLFDLDTTLVDRAEGFRRWAWEFCAEHRLADAEAEWLIAADDRGRADRAAFFKDLRERFDLQEPDLEDAYRERFPALVPATPGVLTGLPRLRAAGWRIGVLGEGEPQLSTLLCTGIAGLVDGWALAGPDGLSTSDPKLFELAAERCETTLDDAWLVGADVEPARSAGLHTVRVGPDRDTAGAIALLLES
>NZ_CP024894.1|WP_009073448.1|1083966_1085184_+|DNA-polymerase-IV
MFVTSEGPILHADLDAFYASVEQRDDPRLRGRPVIVGGGVVLAASYEAKALGVRTAMGGAQARRLCPHAVVVPPRMSVYSAASKAVFEVFRQTTPAVEGVSIDEAFLDVGGLRRIAGRPSEIAVRLRAEVLAQVGLPITVGVARTKFLAKVASGVAKPDGLLVVPPERELEFLHPLPVERLWGVGKVTSAKLRERGVRTVRQVAELPEAALISMLGPGSGRHLHALAHGRDPRAVQPGKRRRSIGSQRALGRRSRSPAELDEIVVSIVDRLARRLRGASRVCRTVVLRMRFADFTRATRSHTLADSTDHTETLLCAARSLLAAAQPLVYDRGLTLLGLSFSNLDSHGAVQLALPLDQPSSPAVSAEATALDSAVDALRNRFGAAALTRAALLSHEAGMEMPMLPD
>NZ_CP024894.1|WP_009073453.1|1086001_1086889_-|helix-turn-helix-domain-containing-protein
MATIDLRTEIKEFLSSRRARIMPEQAGLPAYGGNRRVKGLRREEAALLAGISVDYYVRMERGSLSGTSDEVLEAVASALHLDEAERDHLFQLARQSRTPRRARRRPVATVRPALHQVLAAITDAPAWICNGRYDVLATNPLARALYAPMLTEPRRPANTARFVYLEPEAARAFFVDYDRIASDVAAKLRMEAGRNPHDEDLIALVGELSTHSELFRQRWASQDVRLHRSGRKRLHHPAVGRLDLDVESMDLPTDPGLLLNVYTAPTGTPTADGLALLASWAASQEKPASELRSRS
>NZ_CP024894.1|WP_009073458.1|1087930_1089322_-|sugar-porter-family-MFS-transporter
MTQTAAARRPIGRTTLYFFGALGGILFGYDLGVISGVLPFIGKLWGLSGWDKGVITASISVGAIVGASFSSRLNERLGRRRTIMTAAVVVIIGTLAATFSPTFALLIISRLVIGVGIGLSSSTVPTYLSELAPARLRGAMGALNQIFIVLGILIAFLVSYGLGSSGNWRLMFAGAIVPAVILLAGLVFLPETPRWLVANGHEEQARAVLLSSHGGGVNVDEEIGTIREVIRLDSESAKTRFRDLLTPTVRPMLVVALLLAMGQQFSGVNAVNAYFPTMLIGLGFATQAALLSGVLLGVTKFLFTAWVVFVVDRWGRKPLLLIGNVLMVLTLVAAGFIVLEVHDTATKGILMLVAMVLYLVGYELGWGAVVWVMMAEVFPLKVRAAGMGVSSVVLWAATGIISAVFPIISDPGALGLGGSMFLFAGINVALFFLTKWLVPETKGRTLEEIELDLRGRTHAKARA
>NZ_CP024894.1|WP_037712618.1|1089752_1090046_+|hypothetical-protein
MGTGFEVAPGEVATAAGRARQAAATVRTADLAGALAGVGLSGGTSVAAADRLSDTWGRAVPKWTADTEAYAGNLDQAAAGYRGADQNATGEIAAAGR
>NZ_CP024894.1|WP_009073462.1|1090042_1091536_+|hypothetical-protein
MITWGDVRRWNPADLAAAVDALGTRAARLSAANDDADAMTKFGAWQGDAADAATAKGTALTAELRQLTTDVSAVRRGVHDAQLAVERISSAVQEVDDFASRNGMRIDDGGGVSGEPERQAEVADRVSRILRDATEIDADLTVVLDRAAKGESGGTGMVALAMATTSRPKPNATPAENRAWWDSLSDSAQSSILRDNPDLIRNLDGIPVVDRDAANRVVLQQEIDKRKGDDAQLRGLTAIRDRLAADGKPPAFLISLDVSGDGTAVVAAGNPDTAANVATYVPGTGSELAKIGGDLGRSDKMWQSATMAGSPSTSVITWVGYDAPDELVNAASEKYADGGKEALSKFEDGLRASHEGAPSHNTVLGHSYGTTVIGHAARDGGLNADDLIFVGSPGVGVEHANQLHLDGVPQDQVAQHVHSTVAEHDLIKMTNIGVGGHDPLGPSPAGGGFGGQVFESAPGDKGPWYEGGLSGAAHSQYWEDNNPSLRSFGRIIAGLPA
>NZ_CP024894.1|WP_009073464.1|1091607_1092156_+|hypothetical-protein
MTPTITETEARDRVEDYVRGAFSALPAPAGRELFSRNRSECTDPTDHGPAGRYEISATYEVTGLEPDTFAAQFDAVVKWWQGHGFTVLTDRRPTDQYVFARNERDGFDMSLQANELGKLYLGATSPCVWPKGTPEAEAAPAAVEEVEEPEVAPEPERPRPRRAPVDDEDFGQTSWSDGGTAF
>NZ_CP024894.1|WP_009073466.1|1092205_1092658_+|PPOX-class-F420-dependent-oxidoreductase
MSQGPAPRKLSDEALSDLLSQQRFGTLATIKRSGQPHLTTMLYSWDPDARVVRFSTTADRSKVGHLRRNPRATLHVQGGDVWSFAVAEGRAEVSEVTEVPGDAVGQELLAMLPEAARPEDAEAFLKQQVAERRVVIRLPVERLYGTALDV

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Crispr_ID: NZ_CP024894_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_2

4925868-4925962

Orphan

Consensus_repeat	Method
CGCGCGCGTTTCGATCGCGATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_2

>merge|NZ_CP024894|2|4925868-4925962|CRISPRCasFinder
CGCGCGCGTTTCGATCGCGATCTCAGTGCTCAGCGTGCGGTCGCACCCCCGGACCCGCCGGTGGATCAGACCGCGCGAGTTTCGATCGCGATCTC

>NZ_CP024894|2|1|4925868-4925962|CRISPRCasFinder
CGCGCGCGTTTCGATCGCGATCTC	AGTGCTCAGCGTGCGGTCGCACCCCCGGACCCGCCGGTGGATCAGAC
CGCGCGAGTTTCGATCGCGATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_009079736.1\|4924152_4925337_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|179560
NZ_CP024894.1\|WP_037714529.1\|4922766_4923975_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NZ_CP024894.1\|WP_009079739.1\|4925620_4925842_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_037714536.1\|4934085_4934655_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP024894.1\|WP_037717733.1\|4917586_4919101_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NZ_CP024894.1\|WP_009079753.1\|4935334_4938073_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP024894.1\|WP_009079755.1\|4938136_4938577_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|161843
NZ_CP024894.1\|WP_009079746.1\|4929567_4930419_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP024894.1\|WP_009079756.1\|4938984_4939698_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP024894.1\|WP_009079719.1\|4915097_4915853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379276
NZ_CP024894.1\|WP_009079721.1\|4915924_4916830_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP024894.1\|WP_037717737.1\|4932193_4934089_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|274414
NZ_CP024894.1\|WP_009079744.1\|4927729_4929223_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|236126
NZ_CP024894.1\|WP_009079732.1\|4922038_4922665_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP024894.1\|WP_078560835.1\|4930322_4931330_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
NZ_CP024894.1\|WP_100267101.1\|4920761_4922042_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP024894.1\|WP_037714534.1\|4931438_4932167_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP024894.1\|WP_009079722.1\|4916843_4917581_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP024894.1\|WP_037714527.1\|4919187_4920714_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NZ_CP024894.1\|WP_009079741.1\|4926541_4927174_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_009079736.1\|4924152_4925337_-\|dephospho-CoA-kinase	gnl\|CDD\|179560	PRK03333, coaE, dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional.	0
NZ_CP024894.1\|WP_037714529.1\|4922766_4923975_-\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	1.59957e-175
NZ_CP024894.1\|WP_100267101.1\|4920761_4922042_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.12482e-59
NZ_CP024894.1\|WP_037714536.1\|4934085_4934655_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.20925e-13
NZ_CP024894.1\|WP_009079744.1\|4927729_4929223_-\|30S-ribosomal-protein-S1	gnl\|CDD\|236126	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP024894.1\|WP_009079753.1\|4935334_4938073_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP024894.1\|WP_009079755.1\|4938136_4938577_+\|hotdog-fold-thioesterase	gnl\|CDD\|161843	TIGR00369, Putative_esterase, uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.	6.20644e-26
NZ_CP024894.1\|WP_009079746.1\|4929567_4930419_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.45271e-21
NZ_CP024894.1\|WP_009079756.1\|4938984_4939698_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.36786e-122
NZ_CP024894.1\|WP_009079719.1\|4915097_4915853_+\|hypothetical-protein	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.88034e-19
NZ_CP024894.1\|WP_009079721.1\|4915924_4916830_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.47899e-97
NZ_CP024894.1\|WP_037717737.1\|4932193_4934089_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|274414	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	1.89313e-73
NZ_CP024894.1\|WP_009079732.1\|4922038_4922665_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.21666e-73
NZ_CP024894.1\|WP_078560835.1\|4930322_4931330_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	8.3664e-09
NZ_CP024894.1\|WP_037714534.1\|4931438_4932167_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.70224e-06
NZ_CP024894.1\|WP_009079722.1\|4916843_4917581_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.44335e-14
NZ_CP024894.1\|WP_037714527.1\|4919187_4920714_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	1.36708e-15
NZ_CP024894.1\|WP_037717733.1\|4917586_4919101_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	1.2716e-17
NZ_CP024894.1\|WP_009079741.1\|4926541_4927174_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.00299e-09

>NZ_CP024894.1|WP_009079739.1|4925620_4925842_+|hypothetical-protein
MAEKHVGKHRLGTPGLVHCVSYRQVSDALAEYRRTWFSALLVPAKHSLAGLRRRAREAALERAWVPSVSLERI
>NZ_CP024894.1|WP_009079736.1|4924152_4925337_-|dephospho-CoA-kinase
MLRVGLTGGIGAGKSTVANRLAEHGAVVIDSDRIAREVVEPGTPGLAALTEAFGEEILAEDGSLDRPALAARAFADDESRKRLNSIVHPLVGQRTGELMAAAADDAVVVHDVPLLVENDLAPAYHLVLVVDAPVEVRVRRLVEVRGMPEADARARIRAQAAEEQRRAVADVWLDNGGTPDVVLAEVDALWADRLVPFEANLRLRKPRPPASPVISPYDASWPLQAERRLARLRQIAGSRLVRADHIGSTAVPGLPAKDVLDLQLTVSSLDDADALAEALADAGFPRREGEWWDDPQGGDGKWLKRFHQSADPKRPVNLHVRSTETPAWRLALLFRDWIRAHPDERDGYARVKEELARKHSADGTVEQYADEKQGWVNAAFVRAEKWAEHSGWKP
>NZ_CP024894.1|WP_037714529.1|4922766_4923975_-|threonine--tRNA-ligase
MPDHRKLGRELGLFGSDPLIGAGLPYLLPDGAAIRHVLEEYVREVERRAGYQHVSSPVLGKRELYELSGHWAHYREDMFPPMDLGGEQVVLRPSLCPHHALIYRSRAHSHRELPLRLAELGGMYRAELSGVLGGLSRVRAIQLNDAHIFCLPEQVGAEVRGALELIRRVCQDLGLKPARYRLSLPDNRGKYAGAAEAWDRAAEVLVEALDGIEYERGPGEAAFYGPKIDVQLADSSGRESTLSTVQIDLHQPEQFGLEYVGPDGRAHRPVLVHRAVLGSLERVLAQLIEEHGGAFPPWLAPVQVAVLPVGDAELAAAEAVAEEAMAAGLRAEVVPADRGSLGARIRDRRLVPYQAVVGPLEADAGLVAPRLRDGRRLDPLLAKEFIAAVAARAASRAEALWS
>NZ_CP024894.1|WP_009079732.1|4922038_4922665_+|response-regulator-transcription-factor
MTITLLIADDHPIVRDGLRGIFTGERGFEVLGEAAHGAEAVTLAEALKPDVVLMDLRMPGTDGVAAITELARLGNPARVLVLTTYDTDSDVLPAIEAGATGYLLKDSPREELFRAVRAAARGEAVLSPAVASRIMGQMRAPAQEPLSQREIEVLNLVARGSTNKEAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGLLGS
>NZ_CP024894.1|WP_100267101.1|4920761_4922042_+|sensor-histidine-kinase
MPPAVGRKDEAPVRWHRWFSRTETLLAWLLLAVSVLLTALGSTKPDDHRSTTLLIAAGAAGWLLLTTVVLSAKLRDHPLTAAVAFAGVVTLGAILEARETYFVIFMVYAFFAAMRMKPMVLAVLGIGITSLLINTMTLGGPIHALTVSPGVWISLVIVQTAAISGGGAVFAAVGRQNAERKRMLDQLAAAEAENRGLQRQLLAQAREAGVLDERQRLSQEIHDTLAQGFTGIITQLEAAAQARDDTAEWERHLAAATQLARENLTAARRSVAALRPEPLEAATLPEALAEVARLWSERTGVPAEFSTTGTAVPLHPELEATLLRITQEALSNVAKHARASRAGITLSYMGDEVTLDARDDGVGFDPAHPPAPPSAEGGHGLPGMRRRAERLAGALHVESEPGGGTAVSARLPAIPAATLDPTEGAS
>NZ_CP024894.1|WP_037714527.1|4919187_4920714_+|glycosyltransferase-family-39-protein
MDAVTTATAPSTPGRALAEFARRPVFLLAAGTAAVLLATAGRYGYFGDELYFLAAGKHLAWGYADQPPVLPFLAWLANSLAPGSLVVFRIPAILATAAGVVFTGLIAREMGGERRAQTRAAAAYAICGQFVGSGHYLATSTVDPLLWTIVLWLLVRWIRTRDDNLLLWLGVATAVGLNVKFLIGGFWAVTAITALVFGPRDLLRRPKLWAGAAIAAVACVPTLLWQASNGWPQLGMGDAVSREVEEAGGRAMFVPALLAGAGLVIGALGVLYGLAVLLGSARLRAYRFLGWTAIGVFAIFLIGNGRFYYAAGTFGLLWAAAAVHLQDRRPALWWRWVPTWPMFVLSALYSLPYALPVWPVQWLVEHPTAPRPAYAMEEYGWPDLAASVAKQYRALPPEERTRTTLVTGGYWQAGALDRYGPEQGLPEAYSASRGFWYFGRPNDNADTVLFVGREPARLAAHFRSARVVGEVDNRLGVPNASRHMPIWLLDGRIGSWAGIWPQLKDLKA
>NZ_CP024894.1|WP_037717733.1|4917586_4919101_+|glycosyltransferase-family-39-protein
MTTTEDQATTARAVAPFARLPVFGVAALMAVPLVLTANNYGYFGDELYFLAAGRHLAWGYVDQPPLLPLLARAMDTIAPDSLFVLRLPAMLAMLAGVVSAALIARELGGRTRAQVVTAATFAACTQFVASGHYLATSTLDPFLWTVLLWLVVRWIRTRRDGLLGWAGVVTALALYVKFLIGGFWIVAGIALLICGPRELLRRPLLWAGAAIAALALVPTLMWQARHGWPQLSMGAAISNEVGETWGGRVSWLPQVLLLAGVPVGAVLLGYGLWRLLRAPQLRSYRFLAWTTLALAVVFIAVNGRSYYITGMFAPCWAAAAVELERGQAARWWRWIPTWPVYVLSALLMLPAALPVWPHSWLAKNPSLPTPAFSFAEVGWPEGAQSVAKVFHRVPDPAHTAIVGETYWTASALDRYGPHLGLPEPTSPNRGYATLAVPPDSARDVLFVGADPRPLLGHFAHLEPVGAVTTGDAKPSVLDGTPMWLATSRLQPWTEIWPKLANTGA
>NZ_CP024894.1|WP_009079722.1|4916843_4917581_+|ABC-transporter-permease
MLSKLTVAEAKIFLRDPGAPAVVLGIPLALVLVFGLMPGSREPSPEHGGQSSLATLIAPMAVAILLGILALSLFPGAMAAHREKGVLKRLAASPVPPSRLLAAQLLVNLAIAVVAIVLVVGVGTIALGMALPRNPGGFLAVMLLGAVSLFSVGTLLAAFAPTGRAANGLGAAALFPMLALGGVWVPKEQLPPVLQHVADILPLGATLGSLRETAAGHAPQLLPMVALAVVAVVCSTLAARFFRWE
>NZ_CP024894.1|WP_009079721.1|4915924_4916830_+|ABC-transporter-ATP-binding-protein
MPVIEVRNLHKRYRGKTAVEDVSFTVEQGEIFGILGPNGAGKTTTVECVEGLRSPDGGTVSVLGLDPRRDVRELRQRLGVQLQESQLPDRLRVGEVLDLFAAMYRTPADPERLMALLGLTEQRNTFYRKLSGGQQQRVSIALALIGSPEAVVLDELTTGLDPQARRDTWDLVEAVRAEGVTVVLVTHFMEEAERLCDRIAVIDAGRVVAIDTPAGLVGRVGGEQRIRFRPSAPVDPHALAGLPNVRKVERNGAHLVVTGGDGALQAVTSFLARADVVAGELRVEQASLDDAFVALTGRKLG
>NZ_CP024894.1|WP_009079719.1|4915097_4915853_+|hypothetical-protein
MERTAHQVTLDLVCSLYREHTEALRAAKDAQRAHRRAHPAMKTQLDDVEAEITYLLLRHLRPEKVVEIGSLHGWSTSWLLRALADNGAGRLTTVDLIGNATKTVPHALAKGRWEFRQGDARTLAGDWLSDVDYLFIDADHGARFARWYLSDVFPKIDAAVSVHDVFHRATPLPFTEGTEVVRWLEKTQTPYFTAARARAKHAYACLDELRRELGVDSVVHPGRDNPMIYFRIHRSVDARGTAGGPEVTPFR
>NZ_CP024894.1|WP_009079741.1|4926541_4927174_+|TetR/AcrR-family-transcriptional-regulator
MATRHLSTRPAEQHHRGRFLDAALTVLTERGVAGLTVRAVAEQAGASTITVYTRFGGRTGLLDALYERAFDLLGEDLRAVPPSEGDGIADLVEVALAYRRFALESPARYGLMFERSVHDYDPDPALRSGVLRTSFAEFVAKIDRVCPPDVVAQECGYLLWTSMHGLVSVELTIRSQSPLDDWFLSPDESAHATMYRRGVRATIDGLGLRN
>NZ_CP024894.1|WP_009079744.1|4927729_4929223_-|30S-ribosomal-protein-S1
MTTDTATAPTAPTGAPQVAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVTPETEFDPTQYGMAAEYDAEGNYIYPEGFDPDTQEWQEGFDKQREEWERQYAEAHTRYEQHMAQVKKAAEADAEAAADAATGIEGGEQSYTSSAPVEAKSGGTLASDEQLAALREKLSGGA
>NZ_CP024894.1|WP_009079746.1|4929567_4930419_+|class-I-SAM-dependent-methyltransferase
MPEPAAAPAARHASAEERLGTVGVAHREVGGHEAEAANLAWWDADADDYQATHGGFLGDADFVWCPEGVREEDARLLGDVRGKRVLEVGCGQAACSRWLAAAGAEPVATDLSGGMLRHAREGNARTGAAVPLVQANAERLPFAEASFDVACSAFGALPFVPSLETVFGEVRRVLRPGAPWVFSVTHPMRWIFPDDPGPQGLTATQPYFDRTPYVEVDDDGTATYVEYHRTLGDYVRALAASGFALEDLVEPEWPAGHTRTWGQWSPLRGRLFPGTAIFRTRRD
>NZ_CP024894.1|WP_078560835.1|4930322_4931330_+|GNAT-family-N-acetyltransferase
MAGGPHAHLGPVEPAARQAVPRHRDLPHAPRLTGYAAAVSSAGRFAALDPLLPPPVPLASGDRLRAVTASGTQVSAMLQRYRHGPGDAPLLWSAAEVWQLFPDPETAGTEGFDALLGALRSQVDTEAPGADSACVVNWPSRDAEAIRAFLDHGLVPLSALAVRPAVAPEDAAADASIRLAGPDDYPAALALCTATFDYTGLVAHRKREQTAELLGPALRRALGEKATWLAEVDGEVAALAQCDWVQSAPGNEAAELLPTGRWGYVNNVVTAPASRGRGIGRALMARAHRELLNQGATGTYLYYNPTNPLSSVFWHRQGYRPLWTSWEAHPAWALR
>NZ_CP024894.1|WP_037714534.1|4931438_4932167_+|ABC-transporter-ATP-binding-protein
MQVRADRVSLKGPHGPLLPPTSLTVEEGCLTVVHGEPGVGITALALALAGRLKPTTGTVTAEPEGDLRRLVAVVDSPGVSEPDEALPLRVVTGEELALAHRPSSKDAVTAWLSQHDAAPYADSRFENLEPALRIRLLAALAAERDGVRVLVLDAPDRHTSDVETWASVAREHAARGFAVAVLAATTPESALPFPPAKVGETEQPDPVRLYAPPEPAEAEQTRQLPETAELTAETENSEGDRA
>NZ_CP024894.1|WP_037717737.1|4932193_4934089_+|YhgE/Pip-domain-containing-protein
MNAFRIARNELRRLSTGTLPKLAMFALVMVPLLYASFYLYANYDPYGRLDKLPAAVFTEDAGAKDSSGAERNVGREVTDELVKSGTFQWHQVSEKDARDGVRDDKYSFAIGIPHDFSKALLSSGNFEPQQATITLTTNDANNYLAGTIAKQVADQVRKTIAEKVGSEAADKFLVGFSTIYGKISEATDGAKQLADGAAKLQTGQHQLADGAGQLATGSSSLATGLGTLKSSTAQLPSQTQKLADGAGQVADGNQKVADASSLAASASSDLQGRLDSYRSQLNTQLHDAGLSDSQVNDILSRLDQLRSPVNDANGKIQSANGDLQKLASGARQVSDGAHQLASASPQLANGIAQASDGANQLRDGAAKLNDGEKTAVTGTDQLADGSAKLRDGLAAGLKQIPNPDDPTRTATANTIADPVAVTSNGVASAGTYGAGLAPFFISLATWIGAFVLFLLIRPLSTRALTAGASPLRVALGGWLSSAVLGLGQVIVLFAAVTWLVGIHVAHPLGAIGFACLVSLAFTSVVHALNALFGAVGKFLGLVLLVLQLVSAGGTFPWQTIPDALYPLHIVLPMGYAIDGFRHLLYSGASLQILGDVGVLLAYLVGGILLSTLAARKHRVWSVSALKPELSL
>NZ_CP024894.1|WP_037714536.1|4934085_4934655_+|TetR/AcrR-family-transcriptional-regulator
MREATKRKLFEATLRLSASRGLVGLTVDDIAAEAGVAKGTVYYNFGSKDGLVDALLRFGVDLLAGRLRAAGSEDDPLAVIEAQVDTTLEFIAEYPGFSQIVVSELWHTPGRWHDTLALLREELIAVVKAQLERLDAAGRLPAGVDIATAAAGLFGTMLVVALDWQVFHPARARGEVLESVMLLVRGLGR
>NZ_CP024894.1|WP_009079753.1|4935334_4938073_-|DNA-polymerase-I
MSPTENRTVANATGAAAAKDRPRLLLIDGHSMAYRAFFALPAENFRTKTGQVTNAVFGFTSMLINLLRDEKPTHLAVAFDLSRKTFRSETYADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLTKENYEADDVIATLTTQAGEDYDVLICTGDRDALQLVTDRVTVLYPKRGVSDLVRFTPEAVEEKYGLTPTQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLADLIDRVDEVKGKVGDALREHLSSVQLNRQLTELVRDVPLESVPDQLELRPWNREAVHRLFDELEFRVLRDRLFETLSSAEPEADSGFEVSGSALAPGALGAWLEAHAGAGEPVALSFRATGSSVRSDLKAVAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLKVPLHAVRARGWTFGGLNMDTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGGADELEQKEISAELVKARAIFELAGALAAELEELGGAKLLAELELPLLEVITELEAAGIAVDTDQLTELEAHYLSRVTQAAESAYEVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFEKTEHPFLQHLLEHRDATRLRTTVEGLIKSVADDGRIHTTLQQTIAATGRLSSIEPNLQNIPVRTEEGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSYGLAYGLSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALAEAGARSRVLLQVHDELVLEIADGERSDVEKLVREGMGSAAELAVPLEVSVGYGRSWNEAAH
>NZ_CP024894.1|WP_009079755.1|4938136_4938577_+|hotdog-fold-thioesterase
MTEQTAEITPGQFAGMDPAAAGQQLNDKIGLKLVELTPERVVGTIPVEGNLQPYGLLHGGANATVAEALGSVLAALNAGPERAAMGLELSCTHHRAVRSGTVTGVATPLHVGRGTITSEIVLTDDEGRRTCTARLTCVVRDRPPGA
>NZ_CP024894.1|WP_009079756.1|4938984_4939698_-|ABC-transporter-ATP-binding-protein
MTLLELSDVSVHYGRIQAVSGLSITVNEGEIVTLIGANGAGKSTTMRAISGIRPISGGAIRFAGEDISRLRGDLRVVRGISQAPEGRGIFPGMTVLENLDMGAYARKDRKNLQPDFDRVFELFPRLAERKTQVGGTMSGGEQQMLAIGRALMAKPRLLLLDEPSMGLAPQFIQQIFRIITEINRQGTTVLLVEQNAQQALSRAHRAYVLETGRITKTGTGQELLADTSIKEAYLGVG

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Crispr_ID: NZ_CP024894_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_3

5295942-5296064

Orphan

Consensus_repeat	Method
CCTCGTGCGCGGCAATGCCGGTTAGAACCGGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP024894_3

>merge|NZ_CP024894|3|5295942-5296064|CRISPRCasFinder
CCTCGTGCGCGGCAATGCCGGTTAGAACCGGCGCCCGCACTCACGAGGACCGCCCGGCCGCCGCACGCCTCTGCCGCTGTTGCCCACGCGCCCTCGTGCGCGGCAACGCCGGTTAGAACCGGC

>NZ_CP024894|3|2|5295942-5296064|CRISPRCasFinder
CCTCGTGCGCGGCAATGCCGGTTAGAACCGGC	GCCCGCACTCACGAGGACCGCCCGGCCGCCGCACGCCTCTGCCGCTGTTGCCCACGCGC
CCTCGTGCGCGGCAACGCCGGTTAGAACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_009080372.1\|5303247_5303691_-\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP024894.1\|WP_037714682.1\|5302475_5303261_+\|DUF1295-domain-containing-protein	unknown	unknown	gnl\|CDD\|226275
NZ_CP024894.1\|WP_009080374.1\|5304312_5304747_+\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|274650
NZ_CP024894.1\|WP_009080361.1\|5296294_5297611_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP024894.1\|WP_037714681.1\|5301246_5302485_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP024894.1\|WP_037714680.1\|5299183_5299909_-\|DUF1365-domain-containing-protein	unknown	unknown	gnl\|CDD\|377778
NZ_CP024894.1\|WP_009080360.1\|5295187_5295901_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|376831
NZ_CP024894.1\|WP_009080368.1\|5299902_5301174_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
NZ_CP024894.1\|WP_037367937.1\|5293406_5293679_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP024894.1\|WP_037714677.1\|5293794_5294367_-\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|224712
NZ_CP024894.1\|WP_009080355.1\|5291733_5292360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227127
NZ_CP024894.1\|WP_037714679.1\|5298597_5299191_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182015
NZ_CP024894.1\|WP_009080352.1\|5286828_5289558_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380042
NZ_CP024894.1\|WP_009080353.1\|5291000_5291789_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP024894.1\|WP_037714678.1\|5294447_5295191_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_CP024894.1\|WP_100266862.1\|5303687_5304164_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP024894.1\|WP_009080363.1\|5297839_5298601_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378389
NZ_CP024894.1\|WP_009080349.1\|5281452_5284614_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP024894.1\|WP_009080356.1\|5292501_5293353_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226127
NZ_CP024894.1\|WP_100266861.1\|5289502_5290936_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_009080372.1\|5303247_5303691_-\|DUF664-domain-containing-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	9.22211e-10
NZ_CP024894.1\|WP_037714682.1\|5302475_5303261_+\|DUF1295-domain-containing-protein	gnl\|CDD\|226275	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only].	6.87927e-74
NZ_CP024894.1\|WP_009080374.1\|5304312_5304747_+\|OsmC-family-peroxiredoxin	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	2.44893e-50
NZ_CP024894.1\|WP_009080361.1\|5296294_5297611_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP024894.1\|WP_037714681.1\|5301246_5302485_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	8.4411e-97
NZ_CP024894.1\|WP_037714680.1\|5299183_5299909_-\|DUF1365-domain-containing-protein	gnl\|CDD\|377778	pfam07103, DUF1365, Protein of unknown function (DUF1365). This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.	3.74972e-74
NZ_CP024894.1\|WP_009080360.1\|5295187_5295901_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|376831	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase. Laccases are multi-copper oxidoreductases able to oxidize a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms.	7.76191e-86
NZ_CP024894.1\|WP_009080368.1\|5299902_5301174_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	6.92013e-148
NZ_CP024894.1\|WP_037367937.1\|5293406_5293679_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	3.25067e-06
NZ_CP024894.1\|WP_037714677.1\|5293794_5294367_-\|cell-division-protein-SepF	gnl\|CDD\|224712	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown].	7.70405e-30
NZ_CP024894.1\|WP_009080355.1\|5291733_5292360_-\|hypothetical-protein	gnl\|CDD\|227127	COG4789, EscV, Type III secretory pathway, component EscV [Intracellular trafficking and secretion].	5.85583e-05
NZ_CP024894.1\|WP_037714679.1\|5298597_5299191_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182015	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK.	1.66113e-83
NZ_CP024894.1\|WP_009080352.1\|5286828_5289558_+\|hypothetical-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	0.00306904
NZ_CP024894.1\|WP_009080353.1\|5291000_5291789_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	6.76054e-11
NZ_CP024894.1\|WP_037714678.1\|5294447_5295191_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	3.03708e-74
NZ_CP024894.1\|WP_100266862.1\|5303687_5304164_-\|DinB-family-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	5.29563e-38
NZ_CP024894.1\|WP_009080363.1\|5297839_5298601_-\|hypothetical-protein	gnl\|CDD\|378389	pfam10099, RskA, Anti-sigma-K factor rskA. This domain, formerly known as DUF2337, is the anti-sigma-K factor, RskA. In Mycobacterium tuberculosis the protein positively regulates expression of the antigenic proteins MPB70 and MPB83.	5.24748e-25
NZ_CP024894.1\|WP_009080349.1\|5281452_5284614_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP024894.1\|WP_009080356.1\|5292501_5293353_-\|DivIVA-domain-containing-protein	gnl\|CDD\|226127	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning].	2.53042e-21
NZ_CP024894.1\|WP_100266861.1\|5289502_5290936_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.94389e-56

>NZ_CP024894.1|WP_009080360.1|5295187_5295901_-|peptidoglycan-editing-factor-PgeF
MRVRRVVTTRAGGASRPPYESFNLGDHVGDDAGDVYANRKRLASELGLAEDKLAWMEQVHGRTATVVDGTETSAAEATDALVTDRPGVALVVLVADCVPVLMADPEAGVVAAVHAGRVGARVGVVPAALEAMRGLGAEPSRVEALLGPAICGDCYEVPAAMAADVEKHLPGSACKTRKGTSGLDLRAGLWQQLADLGVGRVGADPRCTAEDKTLFSFRRDGTTGRIAGITWLEEEKA
>NZ_CP024894.1|WP_037714678.1|5294447_5295191_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSEDPAEQRRAELAASLAAVEERIARACAEAGRSRDEVRLLGVTKTFPAADAALLTDLGLLDLAENRDQEAGPKAAEVAELRPDVAPRWHMVGRLQRNKARSVVRWAAEVQSVDSARLADALARAVAAAREAGERTGPLDVLVQVSLDGDVARGGTPLDEVGALADRIAHTGELRLRGVMAVAPLGEDPAAAFARLSHAAERVRDRHPEAADVSAGMSHDLDQAIRHGSTCVRVGTALLGGRGLASP
>NZ_CP024894.1|WP_037714677.1|5293794_5294367_-|cell-division-protein-SepF
MSALQKLKAYFGMVPADEDGYDDGYDEYDDGYDQPPARSRARYRDVEDSYDEPAARVRSRSMAAEPATHGALAVDRQPEPVARLRPVAEPVAAPARDPLSRITTLHPTSYIEARAIGEHYREGIPVIINLTEMDNADAKRIVDFAAGLAFAVRGSMDKVTNKVFLLSPPDVDVTAEDRRRIAEGGLFLRG
>NZ_CP024894.1|WP_037367937.1|5293406_5293679_-|YggT-family-protein
MWLAIWYVLFAFWLLLTARIVVELVRTFAREWRPAGGVAVTLETIYTVTDPPVRLFRRIIPMVRIGGVGLDLSIMVLLLVVFFAMQLTPR
>NZ_CP024894.1|WP_009080356.1|5292501_5293353_-|DivIVA-domain-containing-protein
MSLTPADVHNVAFSKPPIGKRGYNEDEVDAFLDLVETELARLIEDNNELRQQVEQLDAELESTRSELENAKVAGPPPGRDPEPSRRLAPVPPPASAMEQTQAHSMVPDSGEPNVQAAKVLGLAQEMADRLTAEAKTESDGMLAEARTKSEQLLSDARAKSDSMVNEARTRAETMLNDARTRAETLERQARDKATTMERESQRKYTETMNNLNAEKGALGKKIEELRTIEREYRTRLRGFLESQLRELDDRGSAAPASASSGSSQSSTGSSGQGYSFGPRAEAG
>NZ_CP024894.1|WP_009080355.1|5291733_5292360_-|hypothetical-protein
MLYIVLLLVLAALGLLVTALVTGTSLWAWVSIGLSVLAGLLLLVDWLRRRKSADAAESADEDAEGASDAEGSEDSADSEEEKDEAAPAEKDVEQTTLIPAMGELGDPADVPEPEIEKPAAEAEPKTEAKAVRDTPPGVEETAPEDLEVVKDLEDEVVVVDEYPRYHLVDCGWLSGRDTIPIGVGEARQLGFTPCARCGPDAVLAAAHR
>NZ_CP024894.1|WP_009080353.1|5291000_5291789_+|winged-helix-turn-helix-transcriptional-regulator
MEGDADIARTAALFADPARVRVLMALADGRSLAASVLAGEAGLTAQGVSAHLSKLLAAGLVTAEKSGRHRFYRIAGAAPELLEALARHSPARPVRSLREGTRAEALRTARLCYDHVAGRLGVTVTAALLDRGALATVDGDPTTQRRPGDRISSQLQEHPYVLGPAADDVFAELGVDVEAVAKSRRPLLRFCLDWTEQRHHLAGALGAAVTRRFMDAGWLRSRAKAHRAVQLTETGAKVLEEVLGVSDVPRPAPHRDHSARTA
>NZ_CP024894.1|WP_100266861.1|5289502_5290936_-|MFS-transporter
MRSAILFTMCAGMFLVQLDVTVVNVALPTLGSELHADVPQLQWTVVGYSVVLAALLLTGGALGDVLGHRGVVLTGLAVFGAASAACGLAQSAGWLVAARAVQGVGAALLLPGTMAVITGTFPGRTERARALGIWAGFSALALPAGPLLGGILVQTAGWRPVFWLNVPIVAAAAVATRRMVPPDVRKPGRVDVPGAATAALALGCGVYAVIAKTPWAGLLAVAFAVAFVVVEQRSSAPMLPLSLLRSRQTAGANLVSAAMNFVGLGSVLVFTLYLQDVLHADPIAAAVALLPMFVPLVLVGPVSGRLTAKFGPRPQIVTGLLLGVAAMLNLLRIGTGTGYWTLLPTLFVLSVGMGLLTAAVVTASVAEAPGERAGIAGGINNAARQAGGALGVAVFGAVAGEPAARVSFVDGLHVLGLVSAGLWFAAAVLAVVTVRGRVRGERVDPPSPGRKPRGLGGSAPTKRRDSPETPGVPRSAP
>NZ_CP024894.1|WP_009080352.1|5286828_5289558_+|hypothetical-protein
MTAPTGQDLWNRLGAARALPFGRGQSAALESLVRAADAEGAGDLQYAARLSLVRAYAHGGEPAKAFVPFAWCLAKHDQGEAAENWDYILFWSFKSIVTSLTDFPEVPLDRTYAVLDDMERRYRAAGHTMNPVHQHRQIVARHVGDHETAVEQYRLWNAAPRGEMSDCAGCEPSSKVAHLSRYGRFEEAVAIAEPVLSGTFTCTEQPEGILSALLLPFVHTGRLEEAARAHRQVYRAIRHNRLELNLLPRHLRFCARTGNHVRGLEILERHLGWLDDAPSPYVEMEFCAAAALNLRLVAESGHGSTTVRRPGGESSVQALHDEFSERALGIAARFDARNGTSEQSDLVRAVLSADPIVDHLPLSWTSPRPAPARTPAAPSFPDTPEELADLAEKHSRRGEEAAAEAAWAKFDELCPDPAGSLLARRLSGSADAAADPEAAVRDWLRAAELFAAEGDEVARHTAASKAGLARGQLGEPGLAELSDAAEALAGLDDQDHYVRALMRWAVALSETDDLDGAFDLLGRAEAAATAVPADLTARLSLLRAELTARSGRLPEARELAERATELYAEAGLAGHESWARLMAARMAASTGDLEAAYAMLRPAESASAAGLRAQVRHTLGMLASDLGLLEDAVGHYRGEAADLAEAGDLAGAALAQLGLASAAERAGDALTAADAAEAAIEVLERDGDQDELARARYLLAGAHRALDQRDPALVLLDQVREHFAAAGNQPAAGHAAETIGDVLDELDRDGEAAESYLRAAEYFRAGELPVDAVRNLRQAAVSWQWTANPERALATLAEAEKSAADLDGDEPPVGWERAMVAMNGGRILGAAGQPEEALTRAAAAAELLQSVGATTEAAIAASLQARLLADLNRPAEARAAAEAAIQGLPPEATEQIEGLRAFLASLDVS
>NZ_CP024894.1|WP_009080349.1|5281452_5284614_-|isoleucine--tRNA-ligase
MYPQASPGGETTVPSQPSFPALEESVLAYWESDRTFQATIDARPAGTNGDNEYVFYDGPPFANGLPHYGHLLTGYVKDIVPRYQTMKGKHVERRFGWDTHGLPAELEAMRQLGITETTEIEEMGIAKFNEASRQSVLRYTDEWREYVTRQARWVDFDNDYKTLDVTYMESVLWAFKRLWDKGLVYEGYRVLPYCWRDATPLSNHELGMDADVYRNRQDPAVTVGFRLEGNDNELDGTYLLIWTTTPWTLPSNLATAVHPEVQYVVVESDGKRYLLAEERVAAYARELGEEPAVVARYTGEQLLGTRYAPPFPYFVGTENAHRVLSADYVTTDDGTGVVHIAPAYGAEDKVVTDAAGIAPVTPVDDHGKFDATVPDYAGQQVFDANPNIVKDLKNGTGGAARQGAVLLRHETYDHSYPHCWRCRNPLIYRAVSSWFVAVTQFKDRMVELNQQITWYPENVKDGQFGKWLENAIDWSISRNRYFGTPIPVWRSDDPAYPRIDVYGSLDELEADFGVRLDNLHRPYIDELTRPNPDDPTGKSTMRRVPDVLDVWFDSGSMPYAQVHYPFENREWFEHHYPSDFIVEYIGQTRGWFYLLHVLATALFDRPAFRTCVSHGIVLGSDGQKMSKSLRNYPDVNEVFERDGSDAMRWYLMASPILRGGNLVVTDRGIRDAVRQAVLPLWNSYYFLALYANAEGKQGQWRTDSPHLLDRYVLAKTHELVTDVEAAMDGYDIAGACQTVRDFLEVLTNWYVRRSRDRFWAGEQDAIDTLHTVLEVTCRVVAPLLPLTTETVWRGLTGGRSVHLADWPNALDLPADAALVTAMDKVRQVASSALALRKANKLRVRLPLAKLVVAAEDVEPLRGFTEILRDEVNVKSVELTADVAAHGTFEVAVNARAAGPRLGKAVQQVIKAVKAGDWTTNASGAVVAAGVELVEGEYDRRLVASGGGAAAELPGGAGLVVLDTEVTEDLANEGLARDLVRVVQQARREAGLDVGDRISLTVDAADEVTAAVRKHEEFVASETLATSVSYGEVAEGFDGTVGEGVKVRVAVAKA
>NZ_CP024894.1|WP_009080361.1|5296294_5297611_-|cell-division-protein-FtsZ
MTPPHNYLAVIKVVGIGGGGVNAVNRMIEVGLKGVEFIAVNTDAQALLMSDADVKLDIGRELTRGLGAGAAPEVGQKAAEDHREEIEEVIKGADMVFVTAGEGGGTGTGGAPVVAQIARKLGALTIGVVTRPFTFEGKRRGKQAEEGIQQLRNECDTLIVIPNDRLLQLGDIGVSLMDAFRSADEVLLSGVQGITDLITTPGLINLDFADVKSVMSGAGSALMGIGSARGEGRAIQAAEKAINSPLLEASMDGAHGALLSIAGGSDLGLFEINEAASLVQESAHPDANIIFGTIIDDSLGDEVRVTVIAAGFDAGAPTHKKLDPPAFGGKQGNGTASASAGQVGGGSAAQAPPQSGATPVPPAGSSGYPVAPPRTPASGLPQPGTGTPPGGLPQPGGGSRGYSPIGSGSATGGLPSRPTTVHDDPTDDDVDVPPFMRR
>NZ_CP024894.1|WP_009080363.1|5297839_5298601_-|hypothetical-protein
MSSPDMHTLAGAYALDALSEVERAQFRRHLDQCDSCAQEVRELRETAARLGAAMDEQPPSGLKDRVLADMRSTRQLPPRTGSAEPRPRGPRRWPMLLAAAAAVIGLALAGVFGGIALHTSGRLNSAQSELDAARDRYRPVAELLAAPDSQTSHVASPRGGGGTVVVSRKLDRVMFMPSGLPPVPSGQVYEAWLMGPDLAPRPAGLLPGGPSGSLVVADGLAGAQQFAISVEQAGGAPSGKPSKDVVLVASVPA
>NZ_CP024894.1|WP_037714679.1|5298597_5299191_-|sigma-70-family-RNA-polymerase-sigma-factor
MDESARPADRLSAVPSTSAEDLMALVAKGDERAFERLYDQLAGPVYGLVRRIVRDPAQSEEVAQEVLVELWKTATRYSAAKGSVLNWAMTLAHRRAVDRVRSARASTERERKATFEAARGRPFDEVAESVATRLERSQVRRCLKTLTELQRESVLLAYYQGYTYREVADVLDTPQGTVKTRLRDGLIRLRDCLGVTA
>NZ_CP024894.1|WP_037714680.1|5299183_5299909_-|DUF1365-domain-containing-protein
MVTALYDATVAHVRRTDPPYSFAHRMYLWRTDLDDLPRLPWWLRPFARFDGRDHFDRDEPGGIRSKLDAWLARRGVDLRGGPVTMLASARVLGYVFNPITVYWCHTPDGALACVVAEVHNTYGGRHAYLLQPGEEVRADKEFYVSPFQEMAGEYRMHLPRPDALLALTVVLHRDGDAALTATLRGVRRPVGIRTLARFLLGRLLQPQRVAALIRRHGLALWRRKAPLAARTGQNTAGALHG
>NZ_CP024894.1|WP_009080368.1|5299902_5301174_-|FAD-dependent-oxidoreductase
MHHTTGQRIAVIGSGVAGLTAAYLLQRRYEVLLFEADDRLGGHAHTHDVPSAHGGTVAVDSGFLVHNERTYPTLLRLFGELGVRTRETEMSMSIRCDGCGLQYAGAKGARGLFAQRSNAASARYLLMLAEVKRFHRHAGRLLARPEAGDVPLGAFLAIGGYSRYFVDHFVLPLVSTVWSADRADTMRYPARYLFEFLRNHGMLTVRNSPKWRTVVGGSREYVERAAKQLTAVHLSTPVRAVQRTARGIEVRDDADTAHRVDRVVVATHADQALRLLADPTPAEQKLLGAFRYSRNEAWLHTDPAVLPTVSAARSSWNYRTPGCGADLRAVQVTYDLNRLMGLDEATTYAVTLNPSGGLEPEAVLAKMSYEHPVYTPESVAAQRNLAELNDGVIAYAGAYQGWGFHEDGCSSGVRAAASFGVTW
>NZ_CP024894.1|WP_037714681.1|5301246_5302485_+|class-I-SAM-dependent-methyltransferase
MPKSAAHRLAEFAERVLGGPLPVAVRTWDGRRAGPPGPTVVLKNRRALRWLLYSPGELGLARAYVSGDLDVEGDLTEGFRRAWAYRPQLSARDFGEAIRLAARLGVFGLPPKPPAEEARLRGKPHTLDRDRSAISHHYDLSNAFYQLLMDDSMAYSSGYWSGTADLARAQHDKLELICRKLGLRPGMRLLDVGCGWGSLLVHAAKHHGVEAVGVTISAEQAQHGKTRLAQHDLDDRVEVRRQDYRELAGESFDAVASVEMGEHVGEDNYPVYASTLFRMLKPTGRLLLQQMSRGAVAPGGGAFIERYIAPDMTMRPLSRTLGHLETAGFEIRDVHALREHYVPTVRAWADTLEQHWDEAVALIGEAGARIWRLYLVGGALAFEENRMGVDQILAVRPDADGRSGMPWTREWA
>NZ_CP024894.1|WP_037714682.1|5302475_5303261_+|DUF1295-domain-containing-protein
MGMIALLGLTAGVTLLAVTLTFGIARLRRRYDTIDTFWGLGFALVAVVSFPFGTGPLALRLTTAALTVVWGVRLAVHLHLRNRGKPEDPRYQQIVERAGANPGFRIFVRTYLMQAAVLWFVSLPVQFAMSGKGFGLTAWLGVLGWLVGFAFETVGDEQLRRFRANPANRGQVLDTGLWRYTRHPNYFGDACVWWGLYLLACSTWPGAATILSPVAMTFTLARGTGKPMLEKGLRQTRPGYADYIARTSGFFPLPPKKLTPR
>NZ_CP024894.1|WP_009080372.1|5303247_5303691_-|DUF664-domain-containing-protein
MSLDRAQLVDDLELLRATVAGKCAGLTDEQAHWPGERMTAAGILWHLALVENALLDVVVTGQPERWAERLAAGREAAFEVGFDLPIDEVRRAYRDSVELCREALAERSLADPVAFEGDRLLTVEAVVEYLVQETSRHLELLRGLTGE
>NZ_CP024894.1|WP_100266862.1|5303687_5304164_-|DinB-family-protein
MAGDERTQLTGFLDFLRASVVWKCSGLTDEQARRTHVPSALTTIAGLLCHLTLVENYWFRVVLDGQPDEWADRLEIDRDAEFRLGLELPMTQLIADYEAEAEKCREVVAARGFDDTVLFKGDRPLTVRWVVAHMIEETARHLGHLDLLRELTDGLTGE
>NZ_CP024894.1|WP_009080374.1|5304312_5304747_+|OsmC-family-peroxiredoxin
MPSRDPTTHWTGGLQKGKGEVTFDSSNLGTYEVSFPTRAGDPDGRTSPEELIAAAHSSCLAMNLSGVLESQNLEAEYIDVSAEATLGPADGGGFEISGIAVTLRAKLDGVTAEQFAELASTAEKTCPVSKALSGTTITLDAALA

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Crispr_ID: NZ_CP024894_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_4

5432592-5432782

Orphan

Consensus_repeat	Method
GGCGACCTCAACGGACCCGGCGGGAACGGCACGCCACCGCCGCTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_4

>merge|NZ_CP024894|4|5432592-5432782|CRISPRCasFinder
AACGGCGTGAACGGTCCCGGCGGGAACGACGTGCCGCCGCCGTTGAAGAACGCTGTCGTGTCGCCTCCGCCGGGCGACCTCAATGGGCCTGGTGGAAACGGCACGCCACCGCCGCTGAAGAACGCCCTCGTGACACCTCCACCGGGCGACCTCAACGGACCCGGCGGGAACGGCACGCCACCGCCGCTGAA

>NZ_CP024894|4|3|5432592-5432782|CRISPRCasFinder
AACGGCGTGAACGGTCCCGGCGGGAACGACGTGCCGCCGCCGTTGAA	GAACGCTGTCGTGTCGCCTCCGCCGGGCGACCTCAATGGGCCTGGTGGAAACGGCACGCCACCGCCGCTGAAGAACGCCCTCGTGACACCTCCACCG
GGCGACCTCAACGGACCCGGCGGGAACGGCACGCCACCGCCGCTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_009080588.1\|5439411_5440797_+\|type-VII-secretion-integral-membrane-protein-EccD	unknown	unknown	gnl\|CDD\|274855
NZ_CP024894.1\|WP_100267120.1\|5431106_5431631_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224310
NZ_CP024894.1\|WP_050788471.1\|5422644_5424192_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340868
NZ_CP024894.1\|WP_009080592.1\|5443550_5446826_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|163057
NZ_CP024894.1\|WP_009080567.1\|5425328_5425598_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP024894.1\|WP_037714763.1\|5448200_5448566_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_158688078.1\|5451284_5451482_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_037717909.1\|5427164_5428031_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
NZ_CP024894.1\|WP_158688077.1\|5450438_5450960_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009080565.1\|5424207_5425194_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236196
NZ_CP024894.1\|WP_050788272.1\|5435398_5439415_+\|type-VII-secretion-protein-EccCa	unknown	unknown	gnl\|CDD\|274858
NZ_CP024894.1\|WP_009080578.1\|5430731_5431031_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|227179
NZ_CP024894.1\|WP_063631965.1\|5440815_5441046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368288
NZ_CP024894.1\|WP_009080574.1\|5429388_5429937_+\|DUF1062-domain-containing-protein	unknown	unknown	gnl\|CDD\|368855
NZ_CP024894.1\|WP_009080572.1\|5428128_5429163_+\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NZ_CP024894.1\|WP_100266870.1\|5426045_5427191_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236607
NZ_CP024894.1\|WP_100266873.1\|5441059_5443531_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP024894.1\|WP_009080593.1\|5446843_5447242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009080576.1\|5430361_5430700_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NZ_CP024894.1\|WP_037714766.1\|5449064_5449610_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_009080588.1\|5439411_5440797_+\|type-VII-secretion-integral-membrane-protein-EccD	gnl\|CDD\|274855	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD. Members of this family are EccD, a component of actinobacterial type VII secretion systems (T7SS) with ten to eleven predicted transmembrane helix regions. [Protein fate, Protein and peptide secretion and trafficking].	1.05455e-29
NZ_CP024894.1\|WP_100267120.1\|5431106_5431631_+\|hypothetical-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	0.0027012
NZ_CP024894.1\|WP_050788471.1\|5422644_5424192_+\|MFS-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.62814e-59
NZ_CP024894.1\|WP_009080592.1\|5443550_5446826_+\|AAA-family-ATPase	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	4.17996e-84
NZ_CP024894.1\|WP_009080567.1\|5425328_5425598_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.0606e-25
NZ_CP024894.1\|WP_037717909.1\|5427164_5428031_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	5.58451e-44
NZ_CP024894.1\|WP_009080565.1\|5424207_5425194_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236196	PRK08241, PRK08241, RNA polymerase subunit sigma-70.	2.77867e-128
NZ_CP024894.1\|WP_050788272.1\|5435398_5439415_+\|type-VII-secretion-protein-EccCa	gnl\|CDD\|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP024894.1\|WP_009080578.1\|5430731_5431031_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|227179	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown].	8.93548e-09
NZ_CP024894.1\|WP_063631965.1\|5440815_5441046_+\|hypothetical-protein	gnl\|CDD\|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	5.89242e-12
NZ_CP024894.1\|WP_009080574.1\|5429388_5429937_+\|DUF1062-domain-containing-protein	gnl\|CDD\|368855	pfam06353, DUF1062, Protein of unknown function (DUF1062). This family consists of several hypothetical bacterial proteins of unknown function.	7.76941e-57
NZ_CP024894.1\|WP_009080572.1\|5428128_5429163_+\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	5.35899e-109
NZ_CP024894.1\|WP_100266870.1\|5426045_5427191_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236607	PRK09648, PRK09648, RNA polymerase sigma factor ShbA.	9.17485e-81
NZ_CP024894.1\|WP_100266873.1\|5441059_5443531_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	2.33572e-12
NZ_CP024894.1\|WP_009080576.1\|5430361_5430700_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.15648e-12

>NZ_CP024894.1|WP_100267120.1|5431106_5431631_+|hypothetical-protein
MHNDSSNKHQTTSADGKFHSPGDQTPPDVKNEWIPPGDVGKPPPVPGGAEHPGRGVTAVNTEAMRTFAKNMQALADGPLKDLPAKLDGIQLKPGVFLTAQEKIFKPIQGTNALRDTTRTAIHDLCKALDEVADAVNKASKAYDSADEVNKMSADDYNQYFNTVSGHITGAGQKP
>NZ_CP024894.1|WP_009080578.1|5430731_5431031_+|WXG100-family-type-VII-secretion-target
MALGQFQISFATMQDTVGQAKQQSNQITELLDQMKAVIEGQRENWTGVAADMFHETYTYCHQAALTLPQALDAAAQTLGQINEGTSNTEGNNAKRFAAN
>NZ_CP024894.1|WP_009080576.1|5430361_5430700_+|WXG100-family-type-VII-secretion-target
MASQDGARVDTSVMRKGAQTISDTGQNITGVNQKVDGTMQTLFGTWRSDSANVFNQAMGQFDQTVRKIVQKLDELAQNVQTSASEYDSRDSDNTSTAHNAAAVIGGGGLQGF
>NZ_CP024894.1|WP_009080574.1|5429388_5429937_+|DUF1062-domain-containing-protein
MLYHWTVLPTRLPLVRRRCHTCSSGLFRADGKFRVNANHKLIDAWLLVLCTGCGETAKLTVFERAKVRSVSPVLLDRLHHNDSSLAAELLQDPVLRRRNRVALDWDDAWRLDTDGLDHLDQDAIDVSVGFAARIPVRPVRLIAEGCGLARAEVERLLAEGKVVSAVRLGGKLSGDFAFTLKY
>NZ_CP024894.1|WP_009080572.1|5428128_5429163_+|bile-acid:sodium-symporter
MTTVLASLARPVSAVLAKLRIDPFIALILVTVGIASLLPASGAAATGFGVVTKIAVGLLFFLYGARLSSQEAVEGMRHWRLHVTVLCATFVLFPLLGLAASFLSPGLLTSPLYTGVLFLCLLPSTVQSSIAFTSIARGNVAAAICSASLSNLLGIVLTPLLVALLLATDGPGVSGSAVLDIVLQLLVPFVAGQLARRWIGGWVQRHSAPLKIVDRGSILLVVYTAFSEGMTEGIWHQLDLGPLLALVAVCCVLLAAVLAATSGGARLLGFARADRITIMFCGSKKSLASGLPMATVLFGHAEVGLIVLPLMLFHQIQLIVCVAMARRYARQAAAEEPGELAPVR
>NZ_CP024894.1|WP_037717909.1|5427164_5428031_-|LysR-family-transcriptional-regulator
MLDPRLCRSFLAVAETRSFTAAARRLGVGQPTVSQHVRRLEADAGGLLFARDTHAVDLTARGQAMLGFAQTIVDTEDRAARHFRGAQVRGRVRFGVSEDFALGELPEILRRLRESHPLVDVELHVELSDVLARRIADGRLDLVLGKRRPGAPGPGRLLRREPLVWIGSAATELTPGQPVPLVQYPMPSVTRQLAVETLERAGLEWRAACQTSSLTGLRAAAAAGLGITVHARSLVPSDLVELPAELGLPDPGDVDFILLSRDGGEGPVAALAEFVVARIGSVASSFEG
>NZ_CP024894.1|WP_100266870.1|5426045_5427191_+|sigma-70-family-RNA-polymerase-sigma-factor
MAGFDGFFRGDFPRLVAFLCAGGLGPGTAREVAVEAFVQETGTWPPPGDPRVAVRLTASRLAAEQTWFDGGAPAEDPPDDRLAEVVERNARGVELLATLPETQRTVLTWALDGFSPAAIASALGMAGTTVRSNLRHARERLKNRLGLAGREEALMTVLREAEAALVNALRSALDVEEALTRVKTEATALAAPRVPAGRFGFDGPVRAAVDGDPDATQDLLAAVQPLIVRYCRARLGGADAYSSADDVAQEVCLALLTALPGYRNQGRPFLAFVYGIAQHKVADAHRAHARNRTETMAELPEAIDLADGPEERALRSELNRHLARLLQLLPERQREIVLLRIVVGLSAEEAAEAVSSTPGAVRVAQYRALLRLRSALERRRN
>NZ_CP024894.1|WP_009080567.1|5425328_5425598_-|WhiB-family-transcriptional-regulator
MELTATSWLARAACQDEDPELFFPISDMGPGAQQVAKAKAVCARCPVRAECLSYALDNGLGNGIFGGTTELERRKLVRSGSAAARHRVA
>NZ_CP024894.1|WP_009080565.1|5424207_5425194_+|sigma-70-family-RNA-polymerase-sigma-factor
MTSDEEFGAQLERHRREIRVHCYRMSGSFEEAEDLTQEAFLRAWKGRAGFAGRASVRTWLYRIATNVCLDALARRPRRALPDELGPAGDPAGEISALDVPWLGPFPDLLLDPAAPDDPGAAVVERETIELAFLATIQLLPPRQRAALLLRDVLDWSAKDTAELLGTSVASANSALQRGRETLRARLPARRAEWSAPDSTTAEETALLRKFIAAYESADVQAVAAVLSEDARAVMPPYPLWFDSRDRILGALRPSFDPQSPHYRGSFRMVPVRANRQPAVAGYLRRPGESVYRAFGVCVLTVRNGLVTAMAAFETAALAPYGLAETFDA
>NZ_CP024894.1|WP_050788471.1|5422644_5424192_+|MFS-transporter
MSAAESPAPAPAMSHRHVLQAMSGLMMGIFVAILASTVVANALPRIVSELGGSQSSYTWVVTTELLAMTATVPLWGKLSDLYNKKLLIQLSLGLFVVGSLVAGLAQNIDVLILSRIAQGVGGGGLTALAQVIMAAIVSPRELGKFSGVFGAVFAVGTVAGPLIGGVLVDTSWLGWRWCFFLGVPFALAAILLLQRTLDLPTLRREVHVDYLGAFLIMLGVSTLLVWSSLAGSTFAWGSWQTAVLVPAGVLVLVLAVWVEAKVREPVVPLALFRNRTVTLATVASFLVGVAMFGGTVFLSQYFQLALGKSPTVAGLMSLPMIFGLLVSSTVSGQLISRTGKWKPFLLLGAVLMAAGLGLLGLIDAHTSLLELSLSMLVLGVGVGMLNQNLVLVTQNDVPAADLGAATSTLSFFRSLGGSIGVSALGAVLASRVGTLIADGLGPAASAGSGGGKVPDLAQLPAPVVAVIRDAYGIATSDLFLISAPIALLVVVAVAFLKHLPLKTKSGLERLADEAV
>NZ_CP024894.1|WP_050788272.1|5435398_5439415_+|type-VII-secretion-protein-EccCa
MSTETVKRGPRAAGPEMPEGQEELQEPPVMAEPAARDFNSLLMMLPMAIGSLVMVLAFSGVAGSSPFTYVIGGGMGVSMIAMSLGQLSRAAAERKRKMQAERRDYLRYLGQIRERARSTAEDQRHAVAWNNPAPDSLWSLAMGPRLWERRISHEDFARVRIGLGTQQSALELVPPVTKPIEDLEPLSAISLRRFTETYRTLSGIPTAVGLRSFTSVEFDGDPEAAVALVRAMLAQLVAFHSPDELRLAVLTTEAAQAQWDWVKWLPHNNHPTLRDAAGPLRLLAADHDELMDLLGPDVADRDDHDKTVGPTTTEPFVVIVAHLATIPESSRLVGAGLRNVVLLDVTGSLPGGPKVLRLTTKDDLVEFPAGSGVGSATRDELSVTQVEGLARLLAPKRTSGTLEIADQPLESDFGLTALLGIKDVHTFDIPAQWRPRTAQRARMSVPIGVTEDGEIVELDLKESAQGGMGPHGMLIGATGSGKSELLRTLVLGLAATHSSEILNFVLVDFKGGATFLGMDRLPHTSATITNLADELPLVDRMQDSLNGEMVRRQEQLRASGYPSLYEYEKARAAGEQLAPMPTLFLVVDEFSELLSAKPEFMELFVSVGRLGRSLGVHLLLASQRLDEGRIHRVEGHLSYRIALRTFSSMESRSVIGAGSAYELPPEPGNGYLKIDTTNLVRFKAAYVSGPVPAGNGENSAVAAARASREVVPFRTEAHPAKLIVRDDEPEPAEKQSDVDALEAAVPGGPTLADAFIDRLAGAGPAARQVWLPPLAESPSLDSLLPSVTPDPVRGMAVADPAHWGRLRVPMGMIDRPFEQVRELLTADLSSAAGHVAVVGGPKTGKSTLLRTLVLALAMTHTPQEVQFYGLDFGGGGIMSLSGLPHVGSVATRLERDRVVRTIEEISQVMEGRETLFSEHGIESMDSYRALRRSGRIEDPFGDVFLVVDGWYSLKNDYSDLEQKIGELASRGLSFGVHVVIGATRWSEIRPYLRDLLQTRFELRLGDPMESEIGSRKAKTVPNQPGRGLTPDGLHFLAGLPRMDGSGNTDDLAAAAKAVAEEVRLFWPGAPAPAVRLLPAKLPMAQLPAPDGDLRIALGQDEQRLLPVWHDFAATPHLLAFGDNETGKTNLLRVVLRSVLSRYSPSEAKIVLADPSRQLDAEVPEAYRVGYATTTEALQELAQQASVSLTPRVPDQTITADRLKRRDWWTGPRLFFVVDDYQLLTSGMGSPLEPLLSLLSQGSYIGFHLILSRSTSGAMRALSDSVVRRIWELGSPGVVFSYPKEEGKFLGEAAPRQLPAGRAQLVTRRGVKLVQTAIAEEDRTGEGWSSLATTERGVR
>NZ_CP024894.1|WP_009080588.1|5439411_5440797_+|type-VII-secretion-integral-membrane-protein-EccD
MTASTGELCRITVYGPQGRADLAVPMSVPLTSLLPVLLEHTGGRDDLGEAWVLQRLGEEPLDASGTPESLDWKEGEEFHLRPRTDPLPELDFDDIADGMATAVSRRPGRWRPEFNRGLFLGFAIFSLVVLARVLLYPGSAGLTAIGGGVVSLGLLVAAVATGVRSDDKALLTLLGLGGCGFAFLAGAVAVAGLEPAFDLQGTPILTGCLTFALAGGLVLGGRAAWAHAIPFVPFGAAAATGLAGALSLWLHLGAGFTAEQAAGLVSFVLVGLMVFAPRIGIRFARIRGPQLPRSAGELQYDIEPMPAAQMVHQTGYADGYLTIACLAATAVFTGCFPFLVGRGLFTTVLGGLVSAAVLMRSRALLGVWQRVPLAVAGAIGLVLLGLSLIQPLPVAWRGACLAGLCLVFFLLLLAMLRPPPRRLLPIWGHLANWLETLSAVAMIPILLQLFGVYAWAVGLTA
>NZ_CP024894.1|WP_063631965.1|5440815_5441046_+|hypothetical-protein
MVQTQKDHVEAYSFLIGRMTSALVLGDASHLDVPARRAWVGLLVGLVLGLLIAVGFFVYGLIAHHTGAAPAVGRRV
>NZ_CP024894.1|WP_100266873.1|5441059_5443531_+|hypothetical-protein
MELSLIRRGDRALEKKTVGNALVVHLAEGMTGEAQSLALGVAADPEHDLVVVDLPVDSPIAMWESVARALPRRRRGVRLVIGGRSRETTALAGQWLAERINRPVLAPDGSVIPSAGGALFVHAGRGGGWVRFRPGRPPAWEAKRFPRPAWDSGIAAELTPTSSRGVAEPLPGGLWVRPVGFDAPQRHHRTALISRMPAQHDTMTIVLGCPGCPPLALDDAARLWVQLPEKVRAKARFVQYGPMSVPGEVAIGQALADLLGKPVAFYAGVPVGSPQLPTLRTVRYDGRLGWRPFTTELGYEPRTGDETPLPELLSHRPPIHGLDQVSPAVYWYSPDAVVEVVQSGLLVRPPQDGPSSAAVREISLDAAVHNLTFDAADEGSASRMRLLAEDLLARLDEETRRMSRVLPAAALLAERARPRVAARALDAIESGHPAPVAAAAPPAAYLPAAPAALGIAAPTEVPGAIAAPVAAPAPVAAPVAAPVDAPVAEPVAAPVKTETPAAPSAKVAAPPRAAKPISHLAPAEVAPAKPVEPPVAAAAPVQDRPKPAKAPAELRFQETPSSEATALLPKRGADKERQWLRKSLGAEYGLMSNTVARILSEHPGFQGVLSISSSAEVLTDAVAVQLYLSPKGSTIDAGLRRGANGPHVPVARCVVAGLSRLPSHRGPATFAAELPPSAWPLLDGRKVLTEWGFLNALTRPSSTVDGETDVLVWSITGRRTKLLEPNEGGVENRVLFVPGTSFKVLETRKPAAGERGAVLLRELTASEIDETGRVANDRASLDELAVNSLRQTLQTWAEAGEDLVRAVMDEQAAERFGALPGLA
>NZ_CP024894.1|WP_009080592.1|5443550_5446826_+|AAA-family-ATPase
MNRQLLVVGGDRPGAFGTIGAALAQARPGATISVHPGRYEENLVVDRMVSLVAEPGTVEIVANTGSVLVANAEAVQLSGFVLTGLDDQLVTVDVVRGEAALDGCRLSGTSWATLLARLEGSLALRGCTVTSTGGAGVVVASPVQSAIEDTEIVDAASSGVVVAETGSVLLRRCVVRGAAGNGVCVNGEAGAIVEQCEIVGAQKPAMVVEQQGRATITGLTVRDSANVDLYVTSKGRVSVASSQFRSAPMQAAHIAASAEPLLRDCVFAGAGANAVQATGTSAPQFVDCTFEGSPVTILVDDQARPRFERATVRGSTHTAMSVSADSAVSVGGLRMTPDSGVGIVLSGQSTLDLADASIGAGRESGVQVTEAARLTVTDLRVDSTADQAVSFAANAASSAKSVQVRGGGLHLSGTVEISLQDCEIIDSPGDGITVGSPLTASRCRVRNARGSGVYVAARASFTECEILGAGGDGFHVETTEPVSIRDCVVNDASGELVSGEHADVDRLSTDSARSAEPVSPAPPGEFAEQTVSEAAGEVLEGPLGELEALVGLAGVKKEVTGLINLIKMSQMRERMGLPMPPMSRHLVFAGPPGTGKTTVARLYGTVLAELGILSKGHMIEVARQDLVGQYIGSTAIKTTEVVEKAVGGVLFIDEAYTLSAPTGGSGPDFGQEAIDALMKIMEDQRDSLVVIVAGYSEQMEQFLQSNPGLASRFTRTIEFPNYSVDELVTITTGLTRKHYYEMTDDALAALREYFERVPKNSTFGNGRVARKLFEAMVNNQASRLALYPPSKDIELNRLTADDLQAELAQLPSAAKSTVSVTADPAAAVSTSTGWKRLSGLVGQKSVRENAERLLLKLGRLTHERQPLGHQANLVITGKRGTGRSEYARLYAQILSEFRMAPMGQLVHRHLAEELSPQWPGQAEHLVRAAVEDASGGTLVVDLDGEWDTSPHTPGIEALEALSEMIARRPADPVVVFTGESDRVGELLAQLPTLRDAFPYGWQLGEYTVDELAEIAVRLLVRRGHEVPDDVRDALAHELSAAADHTAYAAHELARTLSAAAASRTLAAADLRGIRPPDTGAMALGPGLASVG
>NZ_CP024894.1|WP_009080593.1|5446843_5447242_+|hypothetical-protein
MSSHYEKMLEDAMAAYQHQRDHFDQTRQDVEATASTVTSARREVAATVSRTGELTELSFPTSAYKRMAPAELASVIVQTISAARQKSIAAAAEMLAPMLPPGIAAQDLMSGKVDVNALFSARVPGFDEGNLP
>NZ_CP024894.1|WP_037714763.1|5448200_5448566_-|hypothetical-protein
MAPKAAFWPICFQSKPSRLPCAIWMNSASISSAASSAASCAASRATRESRLIRRDISERSICITAVRPAAQIPGISGAVNGFVIAQIRSAAVTAMEMRMPYFAFSTFSAYSRRAAACCWAR
>NZ_CP024894.1|WP_037714766.1|5449064_5449610_-|hypothetical-protein
MGVLLVTGWELPLGVFAELDGVAEPELSAGLGWFAELGPLGEAGLFVELGPGELELLAAFGLEFGLPVGGGLLAEPLVDVELVAEFGFPVVAFPFVEWELLPVPPFVELLGPPTEFELLAEPPVGSFVGPWLWPGEGALFWPSPCGALLPEPLPLGPALAGPLELLPLEPEPLEPPALLPL
>NZ_CP024894.1|WP_158688077.1|5450438_5450960_-|hypothetical-protein
MTTDSGLGWVLGPDLEARSGATAGFGPGLVSESGVLTGFGWVPGVGSAVGVGLPVVEPGWGTAVWAGLGPGVAGDGPSTVVFGAGLGVESMPLTLVDVGGGTGFGSVEAGELGPVVGPGVRTESGEGFTPEARSVDGFGDGVTFGLSDGFGEALVAGPGVAWPEGLGAVSGLE
>NZ_CP024894.1|WP_158688078.1|5451284_5451482_-|hypothetical-protein
MVGFPGFAAAAAGVLLWRFAAGTDFLDASVGLSRCETASSRERGAGVGSVPIGLAGDGADPFLGN

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Crispr_ID: NZ_CP024894_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_5

5504803-5504919

Orphan

Consensus_repeat	Method
CCGGGAGGGCGCGGGTTCGAATCCTGCCTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_5

>merge|NZ_CP024894|5|5504803-5504919|CRISPRCasFinder
CCGGGAGGGCGCGGGTTCGAATCCTGCCTCCATGTCCATCCCCGCGTCTTGGAGTAGTTCAGCAGGCAGAACACCCGGCTGTTCTCCGGGAGGGCGCAGGTTCGAATCCTGCCTCCA

>NZ_CP024894|5|4|5504803-5504919|CRISPRCasFinder
CCGGGAGGGCGCGGGTTCGAATCCTGCCTCCA	TGTCCATCCCCGCGTCTTGGAGTAGTTCAGCAGGCAGAACACCCGGCTGTTCT
CCGGGAGGGCGCAGGTTCGAATCCTGCCTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_009080684.1\|5511293_5512046_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|188314
NZ_CP024894.1\|WP_009080675.1\|5507725_5508319_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP024894.1\|WP_078560872.1\|5494810_5496547_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP024894.1\|WP_009080681.1\|5509785_5510256_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP024894.1\|WP_009080672.1\|5504944_5507224_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_078560874.1\|5502668_5502851_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379258
NZ_CP024894.1\|WP_009080685.1\|5512073_5516600_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319840
NZ_CP024894.1\|WP_009080687.1\|5516659_5516935_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009080654.1\|5493754_5494771_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380488
NZ_CP024894.1\|WP_037717938.1\|5508862_5509690_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|272862
NZ_CP024894.1\|WP_009080657.1\|5496546_5497224_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|235829
NZ_CP024894.1\|WP_009080652.1\|5492645_5493620_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP024894.1\|WP_037714789.1\|5507220_5507631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_037714792.1\|5510332_5511280_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP024894.1\|WP_158688080.1\|5508377_5508860_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009080670.1\|5503890_5504694_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153139
NZ_CP024894.1\|WP_009080663.1\|5499876_5501397_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|184134
NZ_CP024894.1\|WP_009080664.1\|5501393_5502635_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
NZ_CP024894.1\|WP_009080661.1\|5498773_5499880_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380649
NZ_CP024894.1\|WP_009080659.1\|5497250_5498756_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_009080684.1\|5511293_5512046_+\|HD-domain-containing-protein	gnl\|CDD\|188314	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.	7.77937e-12
NZ_CP024894.1\|WP_009080675.1\|5507725_5508319_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.90331e-13
NZ_CP024894.1\|WP_078560872.1\|5494810_5496547_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP024894.1\|WP_009080681.1\|5509785_5510256_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.03789e-16
NZ_CP024894.1\|WP_078560874.1\|5502668_5502851_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	1.25055e-07
NZ_CP024894.1\|WP_009080685.1\|5512073_5516600_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319840	cd07539, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporters. This subfamily contains P-type ATPase transporters of unknown function. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd2+, and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP024894.1\|WP_009080654.1\|5493754_5494771_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.65165e-116
NZ_CP024894.1\|WP_037717938.1\|5508862_5509690_-\|SAM-dependent-methyltransferase	gnl\|CDD\|272862	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c., methyltransferase, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. [Unknown function, Enzymes of unknown specificity].	1.26818e-77
NZ_CP024894.1\|WP_009080657.1\|5496546_5497224_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|235829	PRK06557, PRK06557, L-ribulose-5-phosphate 4-epimerase; Validated.	9.99383e-147
NZ_CP024894.1\|WP_009080652.1\|5492645_5493620_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	2.17181e-14
NZ_CP024894.1\|WP_037714792.1\|5510332_5511280_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	9.2124e-89
NZ_CP024894.1\|WP_009080670.1\|5503890_5504694_+\|hypothetical-protein	gnl\|CDD\|153139	cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times.	3.7288e-05
NZ_CP024894.1\|WP_009080663.1\|5499876_5501397_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|184134	PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional.	0
NZ_CP024894.1\|WP_009080664.1\|5501393_5502635_+\|ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	1.36008e-124
NZ_CP024894.1\|WP_009080661.1\|5498773_5499880_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380649	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system. Periplasmic aldose-monosaccharides binding protein ChvE that belongs to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	6.33548e-154
NZ_CP024894.1\|WP_009080659.1\|5497250_5498756_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0

>NZ_CP024894.1|WP_009080670.1|5503890_5504694_+|hypothetical-protein
MTASETPSTRRKRSVNRELVELAALFFATGIADLFVSTLSNNRVAPVLMFALGVLFLAAATLRHRWSHRPPRTSPPGQGAAIEWRLRATVRDVPGSLAALTATLAAHRYDIASMQVLAAPDGAVDEFLLRAPEGTTGADIVEAARSSGGENVWVVRADAHDLVDLPTRMLAIAAQATDSGADVCSLLAAMLGPSCTVQRKTGGRPRDERVTGTTMLLHGRPGELLEVRRPPLPFTLAEFARAKALLGVHFAAGAPPACSVPGKPGER
>NZ_CP024894.1|WP_078560874.1|5502668_5502851_-|helix-turn-helix-domain-containing-protein
MLAFLTTSGSAPEFAGILGVHPQTARNRLRNALFGDRLHDPDARFGLEISLRARKLRPAG
>NZ_CP024894.1|WP_009080664.1|5501393_5502635_+|ABC-transporter-permease
MTTANPVRPADPAAPPAGRSPRRISINLRQSGIYVAFALIVILFEAITGGALLEPQNISNIIVQNSYVLILAIGMILVIISGHIDLSAGSVVAMTGAVAAVLTVNLGLPWPLAVVLTLVVGAVIGAWQGYWVAYFGIPAFIVTLAGMLAFRALTLTVLGNQGIGPFPDAIRTLSNGFTGGYLGNIGLGPLGGADLVSLLAGVVVVAGIVLTQWRKRVARLGYGQEVDPFPLFVLKIAVAAALVLAVVVQLARFRNLPWVLVLLAVLVLGYSLVAGKSVFGRHIYAIGGNLQAATLSGVKVKSVTFWVFVNMGVLAALAGIIFAGRLNQAGPTAGVNFELDAIAAAFIGGAAVQGGVGKVVGAITGGLIMAVINNGMSLIGAPSERVMLVKGAVLLAAVAYDIWTKRRAGAAAR
>NZ_CP024894.1|WP_009080663.1|5499876_5501397_+|ATP-binding-cassette-domain-containing-protein
MTELLGMRGITKTFPGVTALSDVTLSVRRGEIHAVCGENGAGKSTLMKILSGVHPHGSYTGEITFDGQACAFGSIRDSERRGIVIIHQELALCAQLSIAENIFLGNERAKRGWVDWNRTNHEAADLLRRVGLRENAVTPVSELGVGKQQLVEIAKALSKRVKLLILDEPTAALNDDDSAHLLALLRELRDDGVTCVIISHKLGEVTAIADTVTILRDGKTIETLSAAGLSEERIITGMVGRDLEHRFPPREPDIGDEVLRIEDWTVHSPSQPGRVVVDGANLTLRRGEIVGLAGLMGAGRTELAMSVFGRSYGTNISGRLVKDGKEITLRSVRDAIRNGLAYATEDRKRYGLNLIDDIQRNTSAAGLPSMSRRGWVNEHTEHDVATRFHRDLRIKAPSVRSVTGKLSGGNQQKVVLAKWLFTDPDVLILDEPTRGIDVGAKYEIYTIVNEMAAQGKAVLVISSELPELLGLCDRIYTLSAGRITGEVARADATQELLMRHMTKERP
>NZ_CP024894.1|WP_009080661.1|5498773_5499880_+|sugar-ABC-transporter-substrate-binding-protein
MRFIRGIRAVAAAAGVAVLAFGAAACGSSAKTVDQQAGGSAGALVGVTMPTKSSERWIHDGDNIKAALEKLGYQVDLQYAENDIPTQVNQIENQLTKGAKLLIVASIDGTALTTQLQEAADRKVPVIAYDRLIRNSTAVDYYATFDNFKVGVEQANSLLKGLGDGPGPFNIELFGGSPDDNNATFFYNGAMSVLKPLIASKKLIVKSGQVDFAPTAILRWDPATAQRRMEDLLTKTYTGGAKVQGVLSPYDGLSIGILSALKSNGYGSAGQPYPVVTGQDAEVASVKSIIAGEQYSTVFKDTRKLADVTVKMADSVLKGQQPAVNNTTDYDNGKKVVPAQLLQPVVVDKSNYQKELLDSGYYTAGQLK
>NZ_CP024894.1|WP_009080659.1|5497250_5498756_+|L-arabinose-isomerase
MISATKPQVWFLTGSQALYGEETLDQVAGQSLRIRQLLAGSGGLPCELVGKPVLTESAGIRQVLQEANADPACVGVVAWMHTFSPAKMWIGGLDALRKPLLHLHTQLDATLPWASLDMDYMNLNQAAHGDREFGFVQTRLGIPRKTVAGHAADPAVVARIDAWARAAIGAAHLRTLKLARFGDNMRDVAVTEGDKVEAELRFGVSVNTYGVTELADRVDAASDADVDSLVAQYADEYALVPELARDGERHESLRYAARIELGLRSFLGEGGFGAFTTNFEDLGGLRQLPGLAVQRLMADGYGFGGEGDWKTSALLAAVKAMGRGSARGTSFMEDYTYHFGPGEAKILGAHMLEVCPSIAADRPSCEIHPLGIGGREDPVRLVFDAAPGRGAVLGLTDLGDRFRLVANEIEVVPPDEPLPNLPVARAVWKPAPSLTTSAEAWITAGGPHHTVLTQAVGTETVRDFARMLDVELLLIDETTTTADFADRIRWNQAYHRLAQGF
>NZ_CP024894.1|WP_009080657.1|5496546_5497224_+|L-ribulose-5-phosphate-4-epimerase
MTLTAQARGTIAELRESVARLHSELTRNELVVWTAGNVSARVPGEDLMVIKPSGVSYDDLSADTMVVTDLHGKLVHGELAPSSDTAAHAYVYRHLPEVGGVVHTHSTYATAWAARGEPIPCVLTMIADEFGGEIPVGPFALIGDDSIGRGLVETLRATRSPAVLMRNHGPFTVGATARDAVKAAVMVEDVARTVHIAHQLGTPVPLSRTDVDRLHARYQNVYGQR
>NZ_CP024894.1|WP_078560872.1|5494810_5496547_+|ribulokinase
MLALTVERHPVARRGIRKEIPPVPADSLVVGIDFGTLSGRAVVVRVRDGAELGSAVTEYRHGVVDDRLPATAEELPPGWALQVPSDYVDVLRTAVPAALADAGADPRDVIGIGTDFTACTMIPTTEDGTPLCELPEFAGNPHAYVKLWRHHAAQPQADRINAAARERGEPWLPRYGGLISSEWEFAKALQLFEEAPEVYRAMRHWVEAADWIVWQLTGTYVRNACTAGYKGIYQDGRYPGREFLAGLHPGFESFVDDKLDHPIGQLGSLAGKLGTEAAAWTGLPAGIAVAVGNVDAHVTAPAAQAVEPGQMVAIMGTSTCHVMNGADLREVPGMCGVVDGGIVPGLWGYEAGQSGVGDIFGWFVDHCVPASYSAAAGTEGLHEFLTRLAARQEIGEHGLVALDWHSGNRSVLVDHELSGVLVGQTLSTRPEHVYRALLEATAFGTRKIIETFEAAGVPVTELIVAGGLTKNPLLMQIYAGVTGLPLSVIGSAQGPALGSAIHAAVAAGAYPDVRAAAAAMGSVQRMAYQPVLANVSAYDELYAEYTALHDYFGRGGNDVLHRLAARRRELATVAKGQN
>NZ_CP024894.1|WP_009080654.1|5493754_5494771_+|LacI-family-DNA-binding-transcriptional-regulator
MPTDGSSAKRQPGLAEVAAMAGVSHMTVSRVVNDTGTVRAETRARVLAAVEQLGYRPNSAARTLATGRSNILGVVALESNLYGPASTLYGIEHAAREEGYGVTISSVSRPRRSTFAEAVDNLRRQAVGGIVVIAPHVAAGEALRQVPDDIPMVAVGGGEFVPVPVISVDQYDGARRVTEHLLSLGHETVWHVAGPEDWLESLERERGWREALERRGAPVPPPLRGDWSPRSGYDAGRRLVAEGRPDAVFVANDQMALGVLRAFAEAGISVPGQVRVAGFDDVPEAAYFSPPLTTVRQDFIEVGRRTFRLLVERMDGGDPDIRHFVAPDLIVRDSTGPR
>NZ_CP024894.1|WP_009080652.1|5492645_5493620_+|helix-turn-helix-transcriptional-regulator
MGGTVECSLSEVHEAVRHNEGSDAVGEALSRALAPLVPHDALRVAATSPAAEFGPAAFSFWHKFDPDLGLALLHRAYACERSPSAPALYDGYGVGSALLVQIRDRRGSWGSLELLRSHGGRRFDDEDARRAARLGPALARVLRWYVTAGPLAPQIPMLAPGVLIVGPDHRLRAATPQALAWRERLRASRRTPDFTDAAHLAGLSLQTRRHLADPRARRPVLTAPAASHGRWISCHTQPFDDGSGDVAVVIEACTGKRLLPSFCDWYRLTPRERQVVQHLCDGAAAKQIARRLDLSVHTVNEHLKAVFRKTAASGRDELVAAITG
>NZ_CP024894.1|WP_009080672.1|5504944_5507224_+|hypothetical-protein
MGHTASPEYAYGQLRRAVRTALSAKDRATRRRAAAKASQWQDVLTGMATGGLRIGSRVPVEDTPAWVTLEVVHGGFATGRYLAEVPLSPAEAALCADGPGTTDRERLNLWYLTDAGLSALRAMLAAESYRIEVPEDAALPVVAWLLEHGHAEAALDLVFELRPFMHRLRLAPLPGSAPRPSGALVRLSTVGEVRESLRSARTQPAIAAMLETLQVWHPLFDRLVELWCDTVEGALPRLAETGVAGGWPCRTWPADWKQRRAEWLADYATASVEHTASTAHLHPKSNFARLHRALLACEHDSAELTGRDVGWVRRALANTITKHGEPGSEPRAALRALQAEVAARPTHAELAAALAERLDRFPADGGLPSLEPVAEDAPAHLVAKVARALEAPIEELVARNVITSADVLATVLPQITAQLLAANFADEQLATLYAQTYAAFRRRRGLLLLDLEQQVRIEELPWVQAVDPLRERRPDASRAARQTLAQTVLLALSAFPQAILPNTLVRELGALAKQAGLPMPLVEEVAADIFMGRFTAKWRTAAELASRTMAGTLYARYYDLPESWPSTEPPRRFRALAKRTADDFADVCAARAAEAQPVRKLYSVAKNGTVLEQSQILTTQNLAVLVHTLDLEPRLRASAPALAAESLTWAVTRLATRTDHYHAALQGVKNAAYAWRQALFFLSFCDVDTQRALLGQLAEQVARAGLAERFAPAVDGLAHVVEGGRFTSEGRVDGGTGRRFLGWTTGSHWCLPELATARG
>NZ_CP024894.1|WP_037714789.1|5507220_5507631_-|hypothetical-protein
MPGEIRRSKHVTALGAVSLGYLGSAVPEVGYAFGSVKVPWSQVCFVRERGNRIEIGLESRSILWEFDHLELLAALSRRYRARAGENERRLTAAVEASRSGDRASAQSGGKGFDKSFLVFALAPLSIPLTLWDMATF
>NZ_CP024894.1|WP_009080675.1|5507725_5508319_-|TetR/AcrR-family-transcriptional-regulator
MPPRRRLDPAQRRAELLEVAAREFAAKPYDAVQMEQIAEQAGVSRALLYRHFHAKHDLFAAVYRQAADRLLADTEPDPDVPLTEQIALGLEVHFDYFLANRNTVLAANRTLAGDPVVQAAITDELTVLRQRLVDASGLTGHAGELLSAALTGWLQFVRVLCVEWLLTDAMSRAELRDLCVGALTGALEKITGEAGRG
>NZ_CP024894.1|WP_158688080.1|5508377_5508860_+|hypothetical-protein
MSTNSEVPVQVRRIVLEPTDTVGALPSAGYAGGFEFSDPAPGLRSPEQWARAGWEQAPRLVRGFLRFAWRAGLGLRMGPKDSPTHVLGWALVSSTEQAAVLEARSWLLTARNVVELRGTRVRWTTFVRFDRRPAAALWSLAVPVHHALMSRLLRRAAQDG
>NZ_CP024894.1|WP_037717938.1|5508862_5509690_-|SAM-dependent-methyltransferase
MPETDVPSGVGRTALAIARGRAAEQLRPDRLFSDPWAAAFLDGDVGPETGPGSEFMAGYFALRTRFFDDYLRTAVAAGCRQVVLLAAGLDTRAFRLPWPADTRLFELDLPDTVRFKEKVLTTRGAEPACAREVVPVDLRDDWSAALLRQGFRPDRPTAWLAEGLLVYLTESENDALLAAVSALSAPGSHFGAEHINPDTLTLPPFQPALAAFARIGAPWRSAVADPRQWLARHGWQARITDPAELARSLDRPVPPAMDPATVDTARLWLIEATRG
>NZ_CP024894.1|WP_009080681.1|5509785_5510256_+|winged-helix-DNA-binding-protein
MPRNENPVEPDAALPPDEWPLGRLLATAARLLQNAFDAELAETGLNHAGFVVLHVLRDGALGQAELARRCRVQAQTTSRTVDRLLRHGLVRRERDPADARRVLVSITAAGRRAHRAAPGRDSRRAWEVLADPEGFRAELARLVVVLQSDDARRERE
>NZ_CP024894.1|WP_037714792.1|5510332_5511280_+|GlxA-family-transcriptional-regulator
MADKREIVVAVCADVVLLDLAGPVQVLDGAGGYRVRLASVDGRPVRSDTGVVLSVDCALSDIDGPVDTVLVPGPPPGQADETAPDLLDGIRRLGETARRVASVCTGAFLLAEAGLLEGRQATTHWAMCAELAARFPGVAVRPDAIYTRDGRIVTSAGVTAGIDLALALVEEDLGPDVARDAARQLVVFLRRPGGQSQFSVWSDVPVPKTPALRVVLDSVAAEPAGDHTLSGMAARARVSVRQLTRLFQQELGVTPGQYVARIRVEAARVLLESCDAGVETVARRCGFGSAESMRRLFVQVLGITPTAYRQRFAHS
>NZ_CP024894.1|WP_009080684.1|5511293_5512046_+|HD-domain-containing-protein
MSDSVSRRTVLGGAAAGAAAIALSTPAASAAPADLPFPATRLARSAQTLVTRAQQPFLRNHSLRSFLFARAAAARQGKRPDEHYDSELMFLICVLHDMGLTEEVKTDQRFEIAGADFAAQFLESHGVTDHRVDTVWDAIALHTTQHVHESPVFQRRRPAEIGVAQIGIGIDLTGPDGPGQLPPGFADRVHARYPRLGGCRALTDVMVGQSLANPRKAPSMTLPGEILHQRHPEVPYPTWDMVLDANTWGD
>NZ_CP024894.1|WP_009080685.1|5512073_5516600_-|cation-translocating-P-type-ATPase
MTENVSSLLSCALRLPAAGVNAALSVPERVVRGASQVAGVAAEAVNLGADAVVTGAGASVRATTCAARVLRDAVVSGAEGTEAVWRHGQKLHLGLRPEPGDDASRFGRVVRKLVREAMARPDVLAAYWDAGLSRMVLTMAEGAASDRLVAAVTARARKHGLSVGAQDEASAHPGDLRTVQTQAAALAISGAGLAMAAATTPLRLRRPPEVLSAALTAVREHPVAQEFLRAKLGRPAAELAVATANAAVHGVGKSPADLALDVLLRAGQLADAVAQVVAFERSCDRLCVPDRDCPTVRPERRAAPPDPVSDYAKTALTGGMIGAAGTVLFKRDLSQASSAILASSPKPARYGWTAYASGAGLALAREGVLVRNPDRLRLLQAADTLVVHSNALCGDQRTVFEANPTDTEWAEGRLWQAALRAVEGEDSPVRLRPTPDDPEAGTGLMIASADGVDVGTVLVGWVPDPLTESVLDAAGQAGLRIVVVQSGSPGVEAALADEVVTDRAMADVVTGCQEDGRVVLTLARVPPSADASARKEVLEGLLRGDLAVAVAHGCDAAVWAADLLSISGLAGVWRLLRAVRAARAAGDRATTCAEAAAALSGLVVATDGQRQWRRLLSPLARLSPVNLATGVALASGWQAAVAMAAETAPAPRPRVAWHALPLEEVRRRLASDPRRRRAHRTGLPERARHLAAEAAELPGTAPVATGLRLAGAMRGELSDPLTPVLAVGAAASAILGSTVDALLVLAAMGANALVGGVQGLRAEQALAGLAATQTQQARRLASADAEPEAVDAADLRPGDLVELLAGDVVPADARLVRLHDLEVDESVLTGESLPVPKQTAATPASDIADRRCMVFEGTTVVAGSARAIVADTGDRTEAGRAVALASRTAPAAGVQARLRELTSEALPLTLAGGVAVTGLSLLRGRTVREAVSGGVAVAVAAVPEGLPLVATVAQMAAARRLSRRGVLVRSARTLEALGRIDTVCFDKTGTLTTNELRVIKVATATGEVLPLEEAEQSAAAAQVLRTGAGACPSEEDSGRTKHAHATDAAVLAAAPSDRKWEQVAGLPFEASRGYAAAAGVEGETGWLVVKGALEVVLPCCPDAPADALSRAETLAGSGLRVLAVARRPVPAEQLSEAVDKPLADLEFVGLLALADSPRPSAAPMVSGLRAAGVQPVVLTGDHPRTALAVAVALGWPEDTAVVTGQELAALDRAGRAELLREAGVVARVAPEQKLQVVEALRAAGRVVAMVGDGANDAAAIRAADAGIALAARGSAAARNAADIVLTDGDLRVLTDTVDEGRALWRSVADAISILIGGNAGEVGFTVLGTLLSGASPLSTRQLLLVNLLTDMFPAMAISVTPSAAPDDGQDVGTGSLGAPLTRQIRDRGIVTALGATTAWLAGAFTPGTARRTSTMSLCGLVGAQLVQTLSGRAHSPLVLATSLGSAAVLFGVVQTPVVSHFFGCTPLGPVAWAGVGGSIVVAKFAPPMLPVVETIVSRVAPKLPNAAR
>NZ_CP024894.1|WP_009080687.1|5516659_5516935_-|hypothetical-protein
MSDTARKPAPRGRRAAAKAAENNSLQVSLPLVGKVSLPPPQQLAYFGGIGVLTALQLIEWPVSVALAAGHVLATSSGDKSLRAFGEALEDA

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Crispr_ID: NZ_CP024894_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_6

5713961-5714065

Orphan

Consensus_repeat	Method
GCTGGCCGTAGGGCTGCTGCGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_6

>merge|NZ_CP024894|6|5713961-5714065|CRISPRCasFinder
GCTGGCCGTACGGCGCGGGCTGGCCGTAGGGCTGCTGCGGGTACGGCTGCGCCGGCGTCGCACCGGACTGCGGGTACGGCTGCTGGCCGTAGGGCTGCTGCGGCT

>NZ_CP024894|6|5|5713961-5714065|CRISPRCasFinder
GCTGGCCGTACGGCGCGGGCTGGC	CGTAGGGCTGCTGCGGGTACGGCTGCGCCGGCGTCGCACCGGACTGCGGGTACGGCT
GCTGGCCGTAGGGCTGCTGCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_037714907.1\|5721212_5721965_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP024894.1\|WP_009080962.1\|5720417_5720795_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NZ_CP024894.1\|WP_037714902.1\|5702451_5703840_-\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_CP024894.1\|WP_009080948.1\|5714153_5715140_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP024894.1\|WP_009080945.1\|5712823_5713600_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_CP024894.1\|WP_009080943.1\|5711562_5711982_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009080950.1\|5715314_5715764_-\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP024894.1\|WP_009080944.1\|5711978_5712797_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237826
NZ_CP024894.1\|WP_100266885.1\|5709598_5710648_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223773
NZ_CP024894.1\|WP_037714904.1\|5705354_5706464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009080937.1\|5704712_5705351_-\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678
NZ_CP024894.1\|WP_009080951.1\|5715760_5716090_-\|CD225/dispanin-family-protein	unknown	unknown	gnl\|CDD\|377375
NZ_CP024894.1\|WP_009080953.1\|5716166_5717066_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP024894.1\|WP_009080958.1\|5718728_5719280_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP024894.1\|WP_009080954.1\|5717062_5717401_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223372
NZ_CP024894.1\|WP_009080960.1\|5719276_5720323_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP024894.1\|WP_009080941.1\|5708852_5709602_-\|TIGR03943-family-protein	unknown	unknown	gnl\|CDD\|274870
NZ_CP024894.1\|WP_009080956.1\|5717393_5718719_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP024894.1\|WP_086024912.1\|5707777_5708191_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
NZ_CP024894.1\|WP_100267128.1\|5703925_5704543_-\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_037714907.1\|5721212_5721965_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	2.66836e-70
NZ_CP024894.1\|WP_009080962.1\|5720417_5720795_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	6.33871e-53
NZ_CP024894.1\|WP_037714902.1\|5702451_5703840_-\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
NZ_CP024894.1\|WP_009080948.1\|5714153_5715140_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	3.81808e-17
NZ_CP024894.1\|WP_009080945.1\|5712823_5713600_-\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	2.50004e-86
NZ_CP024894.1\|WP_009080944.1\|5711978_5712797_-\|isoprenyl-transferase	gnl\|CDD\|237826	PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional.	7.81822e-139
NZ_CP024894.1\|WP_100266885.1\|5709598_5710648_-\|hypothetical-protein	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	3.32652e-38
NZ_CP024894.1\|WP_009080960.1\|5719276_5720323_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	4.64596e-141
NZ_CP024894.1\|WP_009080937.1\|5704712_5705351_-\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	4.79914e-36
NZ_CP024894.1\|WP_009080951.1\|5715760_5716090_-\|CD225/dispanin-family-protein	gnl\|CDD\|377375	pfam04505, CD225, Interferon-induced transmembrane protein. This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.	5.33104e-21
NZ_CP024894.1\|WP_009080953.1\|5716166_5717066_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	8.50879e-167
NZ_CP024894.1\|WP_009080958.1\|5718728_5719280_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	3.72954e-66
NZ_CP024894.1\|WP_009080954.1\|5717062_5717401_-\|hypothetical-protein	gnl\|CDD\|223372	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism].	0.00837327
NZ_CP024894.1\|WP_009080941.1\|5708852_5709602_-\|TIGR03943-family-protein	gnl\|CDD\|274870	TIGR03943, TIGR03943, TIGR03943 family protein. Members of this occur in gene pairs with members of pfam03773. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region.	8.31217e-55
NZ_CP024894.1\|WP_086024912.1\|5707777_5708191_+\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	1.45564e-44
NZ_CP024894.1\|WP_009080956.1\|5717393_5718719_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.64617e-105
NZ_CP024894.1\|WP_009080950.1\|5715314_5715764_-\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	7.69127e-14
NZ_CP024894.1\|WP_100267128.1\|5703925_5704543_-\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	2.97639e-38

>NZ_CP024894.1|WP_009080945.1|5712823_5713600_-|DNA-repair-protein-RecO
MVNLYRDTGVVLRTHKLGEADRIVTLLTKRHGKVRAVAKGVRRTSSRFGARLEPFGHVDVQFYPGRSLDVITQVETVDAFALPLVADYQRYTAASAIAETADRLSAEEGEPVLKLYLLVVGALRALAGGQRDASLVLDAFFLRAMAYAGWAPAITECARCGLPGPHAAFNVAAGGSMCPDCRIAGSVHPAPEVLTLLDALLQGEWAVAESSPGITRRDASGLVAAHLQWHLERQLRSLPLVERRAREAAGPGPVGSAG
>NZ_CP024894.1|WP_009080944.1|5711978_5712797_-|isoprenyl-transferase
MLRRGRETRSAGYELREPDPHPSGAKPPEIPPDLVPKHVALVMDGNGRWANQRGLPRIEGHKRGEAVMIDVASGAVELGVKWLSVYAFSTENWKRSPEEVRFLMGFNRDTIRRQVDYLGSIGVRIRWAGRRPKLWASVIKELQIAEEKTKNNTKLNMTMCVNYGGRAELGDAMRRIGQDVAAGKINPDKIDERTIGKYLYQPEMPDVDLFLRPSGEQRTSNFLLWQSAYAEMVYQDTLFPDFDRTHLWQACLDFAKRDRRFGGAVDQAGSTK
>NZ_CP024894.1|WP_009080943.1|5711562_5711982_-|hypothetical-protein
MSTAEAAETGALLARAREALERYLEVHVDDDGALTFSHADVPCVIQATRLADGLTVLSLTCVVAWDLPDDPSLAAAVAERAGQGLFGTLGVGHTDSGMDVTLRYAFPAEGMDPSPLGTLLMLVVSTASQLRTELPGAVA
>NZ_CP024894.1|WP_100266885.1|5709598_5710648_-|hypothetical-protein
MSDPAGIIAVVETLSNNAAEERPRTRRFRISSIEILCAVLLVAVLAQSKLQDLFDVPALRTGSTVFVAVCVQALPFLVLGVLISGAIAAFVPARALERVLPKKASAAVGVAGLAGVALPGCECASVPVARRLIGQGVAPAAALTFLLAAPAVNPVVLVATAVAFPGRPEMVFARFAGSLATAMAMGWIWARWGKLSWITERALRRLPDVQPGHRWRVFAETARTDLVEAGGFLVLGALISASLNVLVPAKWFEVLSGQIIVGVVVMSVLAVVLALCSEADAFVAASLTAVPLLPKLVFLVVGPAVDVKLFALQTGTFGRSFAARFAPVTFIVAIACGTVAGVIFLGGVQ
>NZ_CP024894.1|WP_009080941.1|5708852_5709602_-|TIGR03943-family-protein
MRRETQNVLLILLGGALVKIALNGDYLRYVKPAQQPWIIAGGAVMLLLGATAIVRDIASARAAAKTAPESDTEHSDAHGHHHHPARSAWLLVVPVLAVFLVAPPALGADSVTRTEARLPASAATTSAAAFPPLPAGAVVPMAMNEVVTRAGWDANGTLNGRTVEISGFVVHTGGQTLLARLVISCCAADAAPVTVHLKGDDADRFPSDTWLRVAGQIVPGTATEANSYTPDLVPATVERITAPKDPYEY
>NZ_CP024894.1|WP_086024912.1|5707777_5708191_+|transcriptional-repressor
MSSVPKPAPVPGRRSTKQRAAVVDLLSTVDDFRSAQELHDELRKRGDGIGLTTVYRTLQSLSEAGEIDVLRTDSGEAIYRRCSSHHHHHLVCRVCGRTVEVEGPAVERWAEKIAADHGFTDISHTVEITGTCAEHAS
>NZ_CP024894.1|WP_037714904.1|5705354_5706464_-|hypothetical-protein
MTRFVTKAAVAALVALPALAPAAAAQTQAGQAVDEKTGPVSFANAASVRLGGDPQHGGALITETQRSPLTPGQSQLGTDRVAVPKDQGERNTFGPNYEIDLGKYADSSASPYPPGIASRDHQVVAALQTTHVPTAVAETNYALRDLSRNKPKAVDNTMLVLEGARSSVDCSGPSKAAGATTAARVWVRGEGDALKQVPMPATGTLSVTGLKMGSPTSVPQSDPGKTTSDLVLSRVSAFDQLIKQDGWRSGDVTAQAGWRVEITTHARDAKNTKLSDVQTTIVLGGVSCSIPKNFVAAAGNGSGSGGAVQQPSVPTEVPAGYLGAPAAASSDDLRLPLGFGLLGGGLLFGAVAIVLGRRRAARVVRSRGE
>NZ_CP024894.1|WP_009080937.1|5704712_5705351_-|class-F-sortase
MPRTVLTVASAVIAVLAIAAGVIVLTWVPAPAPVAVADPPPGSLPGEDGAPAELPSDGQAIGLQRPGSIRLPDGSEARLKRTEITQTGILPIPRGLSDAAWWGARLGAPQGAAVLSGHVNWAGTKGPFDDLWRVRTGDNVSIVDASGGRWLYRVTGATTIPKEQLPAQAPGWFAQTGPHRLVLVTCGGDYVGGTEGYDENRIVTADLVSRPD
>NZ_CP024894.1|WP_100267128.1|5703925_5704543_-|class-F-sortase
MIVVAAVAAVAAVVAAVLIFFAGKDDSAQPPQQTGTAQVGAAQPSGSQAGNTQPDPGQTPGTVKLPGGGQAKLIPEEVGADGALPIPKSLAEAAWWGSGLGAAQGVTLLSGHVNWAGKSGPFQELWKMKAGEVVTVTDTAGKQWEYKIDEVRTIHKSDLAAESAKLFDPEGPHRLVLVTCGGDYVGGQEGYDDNRVVTASPVTRS
>NZ_CP024894.1|WP_037714902.1|5702451_5703840_-|glycine--tRNA-ligase
MPANKIETVVSLCKHRGFVFPSGDIYGGTRSAWDYGPLGVELKDNIKRQWWKTVVQSREDVVGIDSSVILPRQVWVASGHVNVFTDPLIECLSCHKRFRADQLAEDFEARTGKTTTEDDLSEVPCPNCGTRGKYTEPRDFNMMLKTHLGPVETEEGLAYLRPETAQGIFVNFLNVQKASRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGDDEQWHQYWIDARTDWYKDLGIKPENLRHFEHPKEKLSHYAKRTVDIEYRFEFNAGQEWGELEGIANRTDFDLTTHSNHSGVDLSFFDQASGQRYRPFVIEPAAGVGRSMMAFLIDAYDEEEVPNAKGGTDKRTVLHLDPRLAPFKAAVLPLSRNADLSPKARDLAARLRKHWNVDFDDAQAIGRRYRRQDEIGTPYCVTVDFDTLEDDAVTIRERDSMKQERISIDQVESYLAGRLIGC
>NZ_CP024894.1|WP_009080948.1|5714153_5715140_-|RDD-family-protein
MTYPYGQPGGPPQGGPSFGAPPGYPQPYGPARVYADWGQRAGAYLIDFAPLLAGLLLALLVSMVSGVASTIVYLLAILGTLAWTVFNRWINGGNTGQSLGKRIVGIKLVSEAAGEPIGAGTAFVRDLAHALDSMAFALGYLWPLWDDKAQTFSDKILGTVVVPAGPAAAPGAGFGQPGGFGRPAQPGGFGQPGGFPGQPGGFPGQPGGFPGQPGGFGQPVPAGGFPGQSAQPGGFPGQPGFGQPVPGGFPAQPSPSAGFPAAPQGFGASQPGFGQPPVPGTPPRQGFGQPGPAPFDQPEPTQVVLPAREPEATQMSKPETPETGPAQS
>NZ_CP024894.1|WP_009080950.1|5715314_5715764_-|DUF2752-domain-containing-protein
MSTVYTGQPARGTRAVARALAGPAAAAGGIGLACVAVWLGDPTTPGGWLPVCPTKLLFGIDCPGCGGLRMAYSVLHGDFSAALHYNAVALAFTALFAWSGLVWTTGRLRGRPMRSWLHWRWTPLVVAMVFVLWFVARNLPFAPFTGLSV
>NZ_CP024894.1|WP_009080951.1|5715760_5716090_-|CD225/dispanin-family-protein
MTGPYPPQGPYPPSYGYPPQYPPPPDSNLVWAILATVFCCLPLGIVAIVKASQVNTLWYQGYAAEAHRAADEARKWAMWSALSVAILIGLYVIVAIIVVAVAGRVLWFH
>NZ_CP024894.1|WP_009080953.1|5716166_5717066_-|GTPase-Era
MTEPHRSGFACFVGRPNAGKSTLTNALVGTKVAITSSKPQTTRHAIRGIVHRDDAQLVIIDTPGLHRPRTLLGQRLNDVVHETWSEVDVVGFCVPANEKIGPGDRFIAAELKKIARRPPVIGVVTKTDLVKPEQVAEQLVALQEVMEFADLVPVSAVDGFQVQTVADLLVQRLPEGPQLYPGGELTDEPEQTLVAELIREAALEGVRDELPHSIAVTVEEMLPREDRDDLIDIHALLYVERPSQKGIILGHKGERLREVGATARKHIERLLGTKVYLDLHIKVAKDWQRDPKQLRRLGF
>NZ_CP024894.1|WP_009080954.1|5717062_5717401_-|hypothetical-protein
MPDLDAEDQKLVTLARSARARTGADEGAAVRDTDGRTYAATTVDQPTFKLTAVQAAVAAALSSGAEGLEAAAVVTADALVAEASVHAVRDVSKAAPIIFADPSGAVVEVLQP
>NZ_CP024894.1|WP_009080956.1|5717393_5718719_-|DUF21-domain-containing-protein
MGNPPAQVVVAVTLVLLAGVFAAADAAVGTVSQARVDGLVRAGRVGARQLAAVVAERRRHINLLLLLRLACELTATVLVTVSFVAWFDRLWLAILVSAVVMVVVSYVLIGVGPRTIGRQHPYRVGTAVAGPVRALGTVLGPLSRLLIVLGNAITPGRGFREGPFTSEVELRELVDLAQERGVVEDSEREMIHSVFELGDTVAREVMVPRTEIVWIERTKTVRQALALALRTGFTRVPVIDDSVDDIVGVVNIKDLMPEYMGPDGPSTVVDAVMNPASFVPDSKRLDELLKEMQRTHNHMAIAVDEYGGTAGLLTIEDILEEIVGEITDESDADERPEIEELEDGSVRVSSRLGVGDLGELFGIDLEDHDVETVGGLLAERLGRVPLPGAEAEVAGLRLFAEGGKDRRGRMRITSVVVRPSSARPRTRPPQPQEHDRRVEHA
>NZ_CP024894.1|WP_009080958.1|5718728_5719280_-|rRNA-maturation-RNase-YbeY
MSIEIANESGVDVDEASIVSAARYTLEKMEVSPLAELSILCVTLEVMEDLHERWMDLPGPTDVMAFPMDELDSSRRPDAPDSSPALLGDIVLCPAFAKDQAKTAGHRLIDELHLLTVHGCLHLLGYDHAEPAEEREMFGLQKRILGEFQAAVAAHQARDAQRDVDDRVLGIAGLDAPPPGETP
>NZ_CP024894.1|WP_009080960.1|5719276_5720323_-|PhoH-family-protein
MAGTETGGAARPDNRVSAEAQVRFPIPEAAQLSLLGSRDENLRVAEELLAADVHVRGNEVTLTGSAADVAFAERVFTELVQLAGGGQQVGPDTVRRTVGMLSSGDASPAEVLSLNIVSRRGKTIRPKTLNQKRYVDAIDKHTIVFGIGPAGTGKTYLAMAKAVQALQAKQVTRIVLTRPAVEAGERLGYLPGTLNEKIDPYLRPLYDALHDMVEPESIPRLMQAGTIEIAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRLGFGAKIVVTGDITQIDLPGGQRSGLRVVRDILGGVEDLHFAELTSQDVVRHKLVGDIVDAYEKWQAVQDAQEQQAGGWKGTRR
>NZ_CP024894.1|WP_009080962.1|5720417_5720795_-|histidine-triad-nucleotide-binding-protein
MSDAGAAETLFERIIAGEIPADVVYQDDATFAFRDINPQARVHVLVVPRKRYRNVGELAEADPELLSRVLLTARKVAELEGISGSGYRVVFNTDADAGQTVFHVHAHVLGGEQLGLFGRPQAGVH
>NZ_CP024894.1|WP_037714907.1|5721212_5721965_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPDTTLPVFLAPAVPAEGRALLDGEEARHAATVRRLRVGEQLVLSDGAGAMARCAVDAVEAGRAASVTLTVLERWQEEPPALRVHVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWDDGPRGEKALARWRATARSAAKQARRAHVPAVAEPVGTRELAQLAATMSATLVLESGVASKLADLALPDGGDLLLVVGPEGGITDEELALLEESGATTVRLGPTVLRTSTAAAVALGALGVLTGRWH

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Crispr_ID: NZ_CP024894_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_7

6105720-6105829

Orphan

Consensus_repeat	Method
ATCCACCCGCCAGCCGCGCCACCCGCGGCAGCAGGAACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_7

>merge|NZ_CP024894|7|6105720-6105829|CRISPRCasFinder
ATCCACCCGCCAGCCGCGCCACCCGCGGCAGCAGGAACGAGCACACCCGACGACCGAAACCGCTTGACCCATCCACCCGCCAGCCGCGCCACCCGCGGCAGCAGGAACGA

>NZ_CP024894|7|6|6105720-6105829|CRISPRCasFinder
ATCCACCCGCCAGCCGCGCCACCCGCGGCAGCAGGAACGA	GCACACCCGACGACCGAAACCGCTTGACCC
ATCCACCCGCCAGCCGCGCCACCCGCGGCAGCAGGAACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_063631968.1\|6118571_6119933_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP024894.1\|WP_009081531.1\|6106237_6107590_-\|TrpB-like-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|237087
NZ_CP024894.1\|WP_009081515.1\|6095672_6096326_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP024894.1\|WP_100266904.1\|6116998_6118360_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP024894.1\|WP_009081512.1\|6094162_6095146_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236135
NZ_CP024894.1\|WP_009081540.1\|6113215_6114211_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP024894.1\|WP_037715090.1\|6103855_6104215_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP024894.1\|WP_009081522.1\|6100828_6101386_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|377824
NZ_CP024894.1\|WP_009081532.1\|6107798_6108578_+\|GlcNAc-PI-de-N-acetylase	unknown	unknown	gnl\|CDD\|274584
NZ_CP024894.1\|WP_009081542.1\|6114233_6115217_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP024894.1\|WP_009081544.1\|6115557_6116964_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238623
NZ_CP024894.1\|WP_009081535.1\|6109414_6109900_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP024894.1\|WP_100266903.1\|6110832_6113133_-\|xanthine-dehydrogenase-subunit-D	unknown	unknown	gnl\|CDD\|132240
NZ_CP024894.1\|WP_009081524.1\|6101428_6102199_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP024894.1\|WP_009081521.1\|6100070_6100748_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|172294
NZ_CP024894.1\|WP_009081526.1\|6102174_6103761_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009081536.1\|6109890_6110769_-\|carbon-monoxide-dehydrogenase	unknown	unknown	gnl\|CDD\|366378
NZ_CP024894.1\|WP_037715088.1\|6098311_6100090_+\|vanomycin-resistance-protein-VanB	unknown	unknown	gnl\|CDD\|225341
NZ_CP024894.1\|WP_009081514.1\|6095164_6095668_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
NZ_CP024894.1\|WP_009081517.1\|6096444_6098163_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|235708

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_063631968.1\|6118571_6119933_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.67202e-141
NZ_CP024894.1\|WP_009081522.1\|6100828_6101386_+\|polyketide-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	4.32289e-14
NZ_CP024894.1\|WP_009081515.1\|6095672_6096326_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.5423e-47
NZ_CP024894.1\|WP_009081512.1\|6094162_6095146_-\|PHP-domain-containing-protein	gnl\|CDD\|236135	PRK07945, PRK07945, PHP domain-containing protein.	0
NZ_CP024894.1\|WP_009081531.1\|6106237_6107590_-\|TrpB-like-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|237087	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme.	0
NZ_CP024894.1\|WP_009081540.1\|6113215_6114211_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.74425e-81
NZ_CP024894.1\|WP_037715090.1\|6103855_6104215_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	3.48699e-28
NZ_CP024894.1\|WP_100266904.1\|6116998_6118360_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	3.51268e-152
NZ_CP024894.1\|WP_009081532.1\|6107798_6108578_+\|GlcNAc-PI-de-N-acetylase	gnl\|CDD\|274584	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase, also called 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species. [Cellular processes, Detoxification].	2.88866e-52
NZ_CP024894.1\|WP_009081542.1\|6114233_6115217_-\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	3.18622e-58
NZ_CP024894.1\|WP_009081535.1\|6109414_6109900_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.24004e-63
NZ_CP024894.1\|WP_037715088.1\|6098311_6100090_+\|vanomycin-resistance-protein-VanB	gnl\|CDD\|225341	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms].	9.17998e-57
NZ_CP024894.1\|WP_100266903.1\|6110832_6113133_-\|xanthine-dehydrogenase-subunit-D	gnl\|CDD\|132240	TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.	0
NZ_CP024894.1\|WP_009081524.1\|6101428_6102199_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.4463e-78
NZ_CP024894.1\|WP_009081521.1\|6100070_6100748_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|172294	PRK13756, PRK13756, TetR family transcriptional regulator.	1.72352e-14
NZ_CP024894.1\|WP_009081544.1\|6115557_6116964_+\|amidohydrolase	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	4.53355e-123
NZ_CP024894.1\|WP_009081536.1\|6109890_6110769_-\|carbon-monoxide-dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	4.08441e-54
NZ_CP024894.1\|WP_009081514.1\|6095164_6095668_-\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.20989e-39
NZ_CP024894.1\|WP_009081517.1\|6096444_6098163_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|235708	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.	0

>NZ_CP024894.1|WP_037715090.1|6103855_6104215_+|hypothetical-protein
MKQYLLAVQVDEDTLETGEELTAQMARTGKVTDDMKAAGAWVFVGGLRRSHATTVVRPANGGVTMTDGPFAETKEQLGGFWVIQCADLDEALSWADKCAHACGRPIEVRPFAEGPEDAA
>NZ_CP024894.1|WP_009081526.1|6102174_6103761_+|hypothetical-protein
MVGVLVRLKLRVLRNSLRGRQIAGMIVGGLAGLVAALVTIGIAVLPAPEARITVDLLTSVYAVWMAGWVLAPIATGGGDDTLRPEHFALLPIGRRKLAVGLLAASFVGVTALVSLLAFLGLVFYGLRFGPAAALVGLVFTVLQLAFVVLLYRVVMAALGALLTSRKGKELGIILVALTGLSGVAVNYVMKNVAPAIVNGQMPGFVSVMHALPSGWGTLAVHAAGTGEWGTAGGLFAALLGVVAVLVLIWGALLARQVTTPSFRGASRTRAKSSRTRRSLLPSTPVGAVARKELHTWWRDARRRVALMSTLLIGFVITVVPSLSGGGDRSAMLPYFGVAVVLFASMQSGNLYGMDGSALWHTLVVPGAERADIRGRQLAWTLIVAPVALVLALVLPGVTGVPSAYPWVLGLVPATLGAGAGVLMLQSVFLAFPLPDQRRSGSPWSSGGRPGCARAALMLATTLLIVVGALPVVALGVAGTLTDLPVLQWLGIPAGIATGLALAWWWGSLAQQRLVARGPELLATVSKER
>NZ_CP024894.1|WP_009081524.1|6101428_6102199_+|ABC-transporter-ATP-binding-protein
MSDDAAMGLYGLTKRFGTTLAADDVRLEVPKGSFFGLVGPNGAGKTTSLSMAVGLLRPDSGEARVFGVDVWREPERAKSLIGVLPDGLSIPERLTGRELLTYMGLLRGLAPDTVAERAQELLGVLELTDAERTLVIDYSAGMRKKIGLATALLHGPRLLVLDEPFEAVDPVSASTIRTILQRFVASGGAVVLSSHVMALVEQLCSHVAVITRGRVVAAGAVADVRGEGTLEDAFVHIVGGRTGGAEGLAWLASSSD
>NZ_CP024894.1|WP_009081522.1|6100828_6101386_+|polyketide-cyclase
MDPLAIPAPEVLRARQKVVLDHFHDEVRQDWDDVLATFPHPHYEIVPTMTVHDGDAAVRGYYDETRRAFPDQDHEIIALRHSADAVIVEFWLLGTHRGPLGKIPPTGQRFRVRMTAYFLFDADEQLVCERIYFDTLTMLRQLLRAYDVRKPASWPKLVRAVRGLLAMSGDPNPRLSDTSPPAFCR
>NZ_CP024894.1|WP_009081521.1|6100070_6100748_-|TetR-family-transcriptional-regulator
MNTTTRRGRPRKGDARLSREAILTAALEVVDADGAAAVSMRTVAQRLGVDAKSLYHHIDGKEALLDAVAGHVLGGIDLPEPTGRPEEDLRAIAQSFRKATRAHPQAAALVLTRQLPSIAALAPVEAVLSVLRKAGASPEEAVHLLRSLLAVVVGSLLREAGAGPAFGVTDEAGIAHRRAELEQTELPAVVESAPHLARCDHEAEFSFAVELAVAATMQRLTAPRR
>NZ_CP024894.1|WP_037715088.1|6098311_6100090_+|vanomycin-resistance-protein-VanB
MQYEPRWPETDSDQTDILPVVPPEEPPSPPRRRGLRKAGWISGGVLGVLVVAYLIDLLTSQGRVPRGVVVAGVDVGGLERPVAERELRGKIEPRLTQPLTVTAGDARTKLSPTEAGLGLDWSGTLDQAGDQPINPFTRLASFFGTRELGVVSHVEDAKLDPALENLRGRVDREPKEGAIRFDGTTPVAVPPQAGQKLDVAAARAKVLSGWASGRELKLPVAPTPVRTTAEGVQRALAEFAKPAVSAPVVVKGEGADATLTPEQIAGALTFVPGDGGGLAPQIDPKKVTDALAPQLKSTEQEGKDAAIAFSGGKPVVEPSADGNTVDWEQSLKPLPNTLKQTDSRELKAIYKKTPAKVTTEQADKLGVKEVIGEFTTGGFAADSGTNIRVVAEKVNGAIVKPGETFSLNGFTGPRGRPQGYVEAGVIENGAPAREVGGGISQFATTLYNAAYFSGMKDAGHKEHSYYISRYPAAREATVFQNPNGASVIDLKFTNDSDTGVAIQTIWTPSSITVKLWGTKRYTVESVPGERTNPTPPPTKPGPAENCHASNGAPGFTATDTRILRDASSGREVSRHTRSVRYNPQPKITCGEQ
>NZ_CP024894.1|WP_009081517.1|6096444_6098163_+|dihydroxy-acid-dehydratase
MKAPEQLRSHRWFGGDDLRNFSHRTRARQLGYEPEEHLGKPVIGILNTWSDINPCHQHLRERAEQVKRGVWQAGGFPLEFPVATLSETYQKPTPMLYRNLLAMETEELLRSYPVDGAVLMGGCDKTTPALLMGAASAGLPSIFVPAGPMLRGNWRGEVLGSGTDMWKYWDERRAGTIGDRELAELERGLARSPGHCMTMGTASTMTSAAEVLGLTLPGAASIPAVDSAHHRMAAASGARIVGMVWEDLTIAKILDERAYADAITTVLALGGSTNAVIHLIAMAGRSGISLSLRDFDAIARQVPVLANIRPGGDWLMEDFYYAGGLPGLLSRLTDLLHLDRVTATGRPLADSLADVRVHNDDVIRARDNPVASEGGVAVLRGNLAPGGAVIKHIAADPALLTHTGPAVVFDNYADLKKRIDDPALGITADSVLVLRGSGPLGGPGMPEYGMLPIPAYLLEQGVRDMVRISDARMSGTSYGACVLHVAPESHVGGPLALVRDGDLITLDVPARTLQLQVDDAELERRLASWAAPAPRFERGYGALYAEHITQADEGCDFDFLARAGANPEPDAG
>NZ_CP024894.1|WP_009081515.1|6095672_6096326_-|GntR-family-transcriptional-regulator
MPSTFSLPASRTEVVLEEIRRGILARELVPGQQLVEAELAARLGVSKTPVREALKVLSNTGLVTFSPYKGASVCVVDAALARSVYDVRMVLEPEALRRAVRSSDRTAFDEAAQILKEASAADADQTTLSLLNRRFHRALYAGCGNPLMVSMLDDLRDRAALITVVGWDANPSWRKEWSEHKAVLAAARKGDEDGAAELLRAHIAAFLDHVLEAIGEE
>NZ_CP024894.1|WP_009081514.1|6095164_6095668_-|metallophosphoesterase
MRLLLLADTHLPKRAKELPAQVWDEVSRADVVVHAGDWVDVATLDALETRSARLIGVYGNNDGPELRKRLPEVARETLEGVRLAVVHETGDAKGRAARCDALYPDVDVLIFGHSHIPWDTVTPGGLRLLNPGSPTDRRRQPFCTYQTAEIRDGRLDGVELHELPGRG
>NZ_CP024894.1|WP_009081512.1|6094162_6095146_-|PHP-domain-containing-protein
MDPARALRDIAFQLERAGEPTYRVRAFRQAAAVVERLSEDELAARVGAKSLQALKGIGKATAGVIEDAWHDRTPAYAAKLPESTLPDGGELRTALRGDCHTHSDWSDGGSPILEMAETARDLGHEWIVLTDHSPRLTVARGLSPERLRAQMDEVARVNEQLAPFRLLHGIEVDILDDGALDQTEQLLDRLDFVVASVHSKLRMPAREMTPRMLAAVENPHVRVLGHCTGRLVGGRSRPESQFNSEKVFTACRENGVAVEINSRPDRLDPPMRLLRQAVELGCEFAIDSDAHAPGQLDWQAYGCERAEKAGIGPDRVINTRTADQLSR
>NZ_CP024894.1|WP_009081531.1|6106237_6107590_-|TrpB-like-pyridoxal-phosphate-dependent-enzyme
MAERTKYILDEADLPTQWYNVVPDLPEPPPPPLHPGTREPVGPADLAPLFPQALIEQEVSTERYLDIPEEVRDVYRLWRPSPLYRARRLEKALGTPARIYYKYEGVSPVGSHKPNTAVPQAFYNAAEGVTRLTTETGAGQWGSALAFACATFGLSCEVWQVRASYDQKPYRKLMMETFGAQVYPSPSDRTAAGRAILAENPQSTGSLGIAISEAVEQAAADPGARYALGSVLNHVLLHQTVIGEEALRQFELAGDTPDVLVGCTGGGSNFGGLAFPFLREKLAGRLNPVIRAVEPAACPTLTRGRYAYDFGDTAGLTPLLKMHTLGHGFIPDPIHAGGLRYHGMSPLISHIYELGLIEALAIGQQECFAAGVQFARTEGIIPAPEPTHALAACIQEALRCKETGEEKVILTALCGHAHLDLPAYGAYLAGEMVDNELPDAALEESLAALP
>NZ_CP024894.1|WP_009081532.1|6107798_6108578_+|GlcNAc-PI-de-N-acetylase
MATLVTFHAHPDDEAIMTGGVMRKAADEGHRVVLVVATRGEKGEIPEGLLDDGEQLAERRVKETHAAAEVLGVSRVEFLGYQDSGMMGDPSNDGPDTFWSAPIEEAAERLATILREESADVLTVYDDFGVYGHPDHIQVHRVGVRAAELAGTPRVYQGSANRDQIRRAAEALRAAGEESGPDEEMIIGKPEAELTAEVDVTAYLKAKRAAMRAHRSQISEESFFLALPDDKFGEAFGTEWFIREGQGPGVTETDLVKGL
>NZ_CP024894.1|WP_009081535.1|6109414_6109900_-|(2Fe-2S)-binding-protein
MRLNLTVNDEPRTVDDVWEGQSLLFVLRDQLGLPGSKNACEQGECGSCTVYLDGTPVCSCLVAAGQAEGREVRTVEGLANGDQLDAVQQSFIDAGAVQCGFCTPGLIVAAHELVHRVAAPTDPEIREALAGNLCRCTGYEKILDAVRLASARVGEGGTAPA
>NZ_CP024894.1|WP_009081536.1|6109890_6110769_-|carbon-monoxide-dehydrogenase
MDFLSPSTWAEALAAKSARPDAVPLAGGTDVLVELNFDHRRPPALLDLTRVADLTEWTEKDGRIRLGAGVSYTRIITELGTRLPGLAMASRTVGSPQIRNRGTVGGNLGAASPAGDTHPMLLACNATIEAASVRGTRMIPATEFYQGVKRNALAPDELIAAIHLPVATGPQQFAKVGTRNAMVIAVCSFALDLAPETGWVGAAVGSAAPTPRRATAAEDFLRDALADAWTSRSPLPDPVVRRFGELAASAASPIDDVRGSADYRMHAIAVLARRTLSWAWEDYRKGGQPKCA
>NZ_CP024894.1|WP_100266903.1|6110832_6113133_-|xanthine-dehydrogenase-subunit-D
MVTVDSLVRAAETGKAAGVGESALRPDGAAKVTGRFAYSSDLWIEGMVWATTLRSPYAAARIRSIDTSKALAQPGVHAVLTHEDVPGAKTYGMKTADQPVLAVDEVRYHGEPVALVAADDPETARQAAKLIVVEYEPLTPVTDPMTVLDEGVRPVHPDGNLVRHVKIRHGDMVKARAEAEVVVTGEYEVGMQDQAFLGPESGLAIPSEDGGVELYVSSQWLHKDLEQLAPCLGLPPEKVRLTLAGVGGAFGGREDLSVHVHACMLALRLGRPVKMSYNRYESFFGHVHRHPAKMRYEHGATKDGRLVYVKARLVLDGGAYTSTSPVVIANACYFVTGAYDVPNAEIDGLAVFTNNPPCGAMRGFGAVQSAYGCESNMDKLAQALGMDPMELRLRNAMTTGTVLPTGQAVDGPAPVAELLQALRDRPLPPAGSLDLLSLPGGAANTTHGEGVRRGVGYAVGVKAIGYSGGVDDISTARVALSVVNGAPVVSVHTAAAECGQGVTTVQAQVASTELGVSRVVVLPADTQVGDAGSASASRMTWMSTGAVQGACRYLARELLRRGSGVSLGNDQVLDSVGRPVCSIADVLGSDTLEHTFEYHHRPTQGIDPETGQGNAHIAFAFAAHRAVVDVDVELGLVKVVELATAQDVGKAMNPLAVEGQIEGGSVQGLGLALMEEILVDREGRVRNPSFTDYLIPTVLDVPPMPISLFEFPHPDSPYGLNGVGEPPTLSSTPAILNALRSATGLPLPNAPIRPDDIALAGGRAAS
>NZ_CP024894.1|WP_009081540.1|6113215_6114211_+|LacI-family-transcriptional-regulator
MQRVTRDDVARLAGTSPAVVSYVLNNGPRPVAPATRERVERAIAELGYRPNLVARALRSTRSNVLGLVVPDSSEGYFTQLTHAVERAAFARGSLVLLGNSAFSREQELRYAESLANMRVDGLLLVRAEIAGAAATHSTLDVPVVYLHHHAPSGSAAPSVVLDNKAGGRMTTEHLLGHGYREIGCLTGTARSGPVADRARGWAEAMRTAKRSAANVVRTGLDRHAARADIRGWLQSPERPRAIMATADGLALDTLTVAAELGLKVPKDLAVMGFGGTDAAAHSWPPLSTAGHSFDEFADAAVSTLDQLRENAQPEDRILDVRLTARASCGCD
>NZ_CP024894.1|WP_009081542.1|6114233_6115217_-|amidohydrolase
MIIDTHVHPTNLVDEAWRHTGTPFTGERTLEMMDGPFWINGKPRRVDVSCIMPPPGNTTWREGNKTGREGIREYQAYVTSLVQQYPDRFVGNFMYNPRFGPENGAAELAFHVKEYGYKMLKLHANMHSYRPDRALDWLRPVMRVCDELGVIVLIHTGDGPYSIPTQFYPIIREFPNVTFILGHFGIQTGGVYCFEAFWMIQDSPNVIGESGWLLQSRIVEFAKEMKKSDLVFGTDSPPNEPGMWARELEVLCHQPPQGLNLSEDDLEGYLGNNMAKLLGLAPTPPPKDKAEAEAYLRGDIPQASAANTHASHYLGYTPSAWAEAANS
>NZ_CP024894.1|WP_009081544.1|6115557_6116964_+|amidohydrolase
MSAAEPEPCDLLLTGGTVVTVDDQRTVHSSGHVAIIGDRIAGVGEGPGAERWRAAEVVDCRGKAVLPGLVDGHNHLYQALARGLGEGMSIVPWLCEFMWPYSIAITGPEAVAGARLGAVEALRAGITTVIDNHYAPSDLETTLAVADVIEKAGLRGAVARGMLGERTEIADRRGQPIELFRYSTEDEFAITREAMQHRPPSSKVAVWPAALNLCYVEQKLVRRTVELAREFGTRWHTHCCESTTDPVSYLETHGVRPVEWLAKEGLLDERATLAHAIWLDEAEIEQVAATGAGVSHNPASNGYLASGTARIASMRKQHVPVALGTDGPSCGHRQDLFEAMKLSVFGQRTATLDPTALRAEDALEMATREGARYAGIDAGVLSEGKLADVIVTALDRPHVRPVHRAVAALVYSARGSDVELTIVGGEIVYRAGQCVRVDEAAAADEAERHAARLLERSGMGGLLTPWAR
>NZ_CP024894.1|WP_100266904.1|6116998_6118360_+|purine-permease
MRFRPRTTRAETTTRDAVDTVPRFRQLLPLGMQHLLVAYSGMVTVPLLIGLGVGLSTAQIATLVTANVLVSGVATLLQTLGIGNVGVRLPIVMGSTFTGITPAIIVGKEAGLPAVFGATIVAGLLTWLVAPWFSKLIRFFPPIVTGTIIAIIGFSLLPSTATLIAGSNPGAADHGSAGRLILGLGTIVLTVCLERFAPPAVRRFAILIALAVGTVVAIPLGMADFSSVGHADWVGVVKPFEFGLPTFAVSALLPMIIVQLVNMVESTGDTLAIGQIVGREVGPPEISRALRADGIGTAFAGVFGSFTVVTFGENVGLVSITKVMSRFVVATAGAVLVLMSLVPKLGAAVASLPGPVLGGVGVVMFGTVGAVGLRIMSQADLSNGRNILIVAISFGFGLLPVGAPEFYQHLPVVVQTVLTSGIAAGGIAAFLLNLVLNRRERAPRPGPEAAPGY
>NZ_CP024894.1|WP_063631968.1|6118571_6119933_+|purine-permease
MASHPSPPSPVDERPRFGPLVLLGLQHVLVMYAGVVVVPIVVGAGLGLPQAQIADLVSVDLVLAGIGTLLQALGVWKFGIRMPLVVGAASNGIVPMVLIGSTQGLSTVYGSLLVVGVLWVLIAPLFSKLLKLFPEVVTGTVITLIGLTLIPVGLKLIAGSNPSAHNYGAPANLALAGFTLALIAVFYRVFRGLLGQLAMLIALTVGAIVGWLTGLGSLAGVANGPVFGLLKPLHYGALHFDIPSILLFLVIVFVLMVEASGQGLAVGQVVGKKVGPRDIANLLRVDGLLTALSGVFNGFAYTTFGQNIGLVALTKVRSRYPVAVGGVILIVFGVVQPVGRVIAAIPQPVIGAAAVATFAALTVSGIQLLSRVDFNQTGNLVIVMLSLGVGLIPAGAPDFYKQFPFAAQVFLKSGVATGTVLAILLNLLFFARRKRQPEAPIARPEPAAKLSQS

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Crispr_ID: NZ_CP024894_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_8

6489809-6489953

Orphan

Consensus_repeat	Method
CACCGCACGCCCGGCACAGGCACACCCGCCATCACCGCACGCCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_8

>merge|NZ_CP024894|8|6489809-6489953|CRISPRCasFinder
CACCGCACGCCCGGCACAGGCACACCCGCCATCACCGCACGCCCGGCGCACGCGCACCCGCCCATCACCGCACGCCCGGCACAGGCACACCCGCCCATCACCGCACGCCCGGCACAGGCACACCCGCCATCACCACACGCCCGGC

>NZ_CP024894|8|7|6489809-6489953|CRISPRCasFinder
CACCGCACGCCCGGCACAGGCACACCCGCCATCACCGCACGCCCGGC	GCACGCGCACCCGCCCATCACCGCACGCCCGGCACAGGCACACCCGCCCAT
CACCGCACGCCCGGCACAGGCACACCCGCCATCACCACACGCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_009082114.1\|6480450_6480870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223806
NZ_CP024894.1\|WP_009082160.1\|6500778_6501411_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182632
NZ_CP024894.1\|WP_009082131.1\|6486835_6487078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_037715246.1\|6494462_6495680_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NZ_CP024894.1\|WP_100266927.1\|6493913_6494453_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP024894.1\|WP_037715249.1\|6496765_6497605_-\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NZ_CP024894.1\|WP_009082119.1\|6481847_6482441_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP024894.1\|WP_037715240.1\|6479909_6480332_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP024894.1\|WP_009082158.1\|6499629_6500598_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367638
NZ_CP024894.1\|WP_009082116.1\|6480976_6481843_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP024894.1\|WP_009082154.1\|6497621_6498530_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|234602
NZ_CP024894.1\|WP_009082133.1\|6487190_6488309_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NZ_CP024894.1\|WP_100266926.1\|6486001_6486799_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226158
NZ_CP024894.1\|WP_009082141.1\|6495676_6496000_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP024894.1\|WP_009082143.1\|6496024_6496645_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP024894.1\|WP_009082126.1\|6485430_6485946_+\|lytic-polysaccharide-monooxygenase	unknown	unknown	gnl\|CDD\|376983
NZ_CP024894.1\|WP_037715243.1\|6489986_6493337_-\|TM0106-family-RecB-like-putative-nuclease	unknown	unknown	gnl\|CDD\|274603
NZ_CP024894.1\|WP_037715251.1\|6498655_6499633_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP024894.1\|WP_009082123.1\|6483114_6483882_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP024894.1\|WP_009082121.1\|6482433_6483099_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_009082114.1\|6480450_6480870_+\|hypothetical-protein	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.92501e-15
NZ_CP024894.1\|WP_009082160.1\|6500778_6501411_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	4.48798e-15
NZ_CP024894.1\|WP_037715246.1\|6494462_6495680_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	2.30332e-136
NZ_CP024894.1\|WP_100266927.1\|6493913_6494453_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.37942e-22
NZ_CP024894.1\|WP_037715249.1\|6496765_6497605_-\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	5.39176e-15
NZ_CP024894.1\|WP_009082119.1\|6481847_6482441_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.35577e-15
NZ_CP024894.1\|WP_037715240.1\|6479909_6480332_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.34731e-28
NZ_CP024894.1\|WP_009082158.1\|6499629_6500598_-\|hypothetical-protein	gnl\|CDD\|367638	pfam03756, AfsA, A-factor biosynthesis hotdog domain. The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a HotDog domain.	9.7007e-25
NZ_CP024894.1\|WP_009082116.1\|6480976_6481843_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.4116e-20
NZ_CP024894.1\|WP_009082154.1\|6497621_6498530_-\|ribonuclease-Z	gnl\|CDD\|234602	PRK00055, PRK00055, ribonuclease Z; Reviewed.	6.92374e-104
NZ_CP024894.1\|WP_009082133.1\|6487190_6488309_-\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	3.67048e-27
NZ_CP024894.1\|WP_100266926.1\|6486001_6486799_-\|hypothetical-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	1.27131e-10
NZ_CP024894.1\|WP_009082141.1\|6495676_6496000_-\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	8.42154e-24
NZ_CP024894.1\|WP_009082143.1\|6496024_6496645_-\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	2.21018e-22
NZ_CP024894.1\|WP_009082126.1\|6485430_6485946_+\|lytic-polysaccharide-monooxygenase	gnl\|CDD\|376983	pfam03067, LPMO_10, Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.	1.34593e-37
NZ_CP024894.1\|WP_037715243.1\|6489986_6493337_-\|TM0106-family-RecB-like-putative-nuclease	gnl\|CDD\|274603	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.	7.98481e-70
NZ_CP024894.1\|WP_037715251.1\|6498655_6499633_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.13336e-33
NZ_CP024894.1\|WP_009082123.1\|6483114_6483882_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.12565e-33
NZ_CP024894.1\|WP_009082121.1\|6482433_6483099_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	3.95851e-24

>NZ_CP024894.1|WP_009082133.1|6487190_6488309_-|FAD-dependent-monooxygenase
MTITIVGAGLGGLSLARVLHVHGIEATVLDLDASPSARAQGGMLDIHEDSGQVALHAAGLHAEFRTLIHLGGQESRVYDRTAALLFAEADDGSGERPEIDRGVLRDLLLNSLPEGTVRWGAKVTAAEPLSGGRHRLTLADGTSLTTDVLIGADGAWSRIRPLVSPEKPAYTGISFVEIDLLDADSRHPDAAALLGGGMSFALGEDKGFLAHREPDGSLHVYAAVRVPESWTASIDFTDHAAAKAAVLSHFEGWSERLRALVTEADGELVPRLIHALPVEHSWSRVPGVTLIGDAAHLMSPFAGEGANLAMLDGAELGLALARHPDDVERALAEYEAALFPRSAKSAAESAQSLESCFRADAPAALLELFGRP
>NZ_CP024894.1|WP_009082131.1|6486835_6487078_-|hypothetical-protein
MTAVLADTVHEGLQFAAVAGIAVLVAFPVLLFIGALVSVLGSPLGLGMKFVWVVFAFCAPFLGPMLWFLVGKRSAEASLR
>NZ_CP024894.1|WP_100266926.1|6486001_6486799_-|hypothetical-protein
MHKEMDAGEFVERYVAVWNESDPAARRAAVASLWAEDGVQFTESAEYRGHQALERRVSEAFEEFVAGGGFVFRSAGDAAGLHGMIRFTTEMVPAAGGEVALTGLIVLELGEDGLIRRDCQFAEPPRPEGSDARAVVAEFLRRLEQGEPDRIAELFAEPVDWRVSWPEPEHPVVPWIRPRSSLADVADHFRTLGSACVPEESDVRVDRILVDGADAVLVGTSAQTVKLTGKRFATTFAVCLTVDGGLITRYHVYEDSLAVAEAFAG
>NZ_CP024894.1|WP_009082126.1|6485430_6485946_+|lytic-polysaccharide-monooxygenase
MPRKRTMLAALGGAVLAPVLMLIGPGIASAHGYVNSPPSRQAQCADGTVSCGDIKWEPQSVEGPKGLQSCSGGNDRFADLDDDSKGWKVTQVGSQVTFTWVFTARHRTSDYEYFIGGNQVASFSGDDQAPPETVSHQVDLSGYPGQQKVLAVWNIADTGNAFYACIDLNVS
>NZ_CP024894.1|WP_009082123.1|6483114_6483882_-|GntR-family-transcriptional-regulator
MGIGYRDLAASLREAIQRGEYAPDSTLPKQEELAQDYGVNINTVRKAVGVLEAEGLVTPIRRRGTVVRARPPMKRLGVERYAKSKWKYGDTVAFVADREASGREWKSADQTQTVSRVEADAEIAEALGVEVGSSVYERARLVKDAGRPTHTLSSYYRPEDVEGTRLVDETPGPAGRGGGFLVLTLQGLEPDTISETVCSRMPTPDEIETLELPAGEPVMVLHRRTSTAEGRVVEFARGVHAASRFSWSYTFKIPD
>NZ_CP024894.1|WP_009082121.1|6482433_6483099_-|YdcF-family-protein
MPESPIALPEHLRADVQTLWDYHDLHHELRPTDVGIGLGSHDLGVAAYTAELYQQGCFRQIVFTGANAPTTVDRFPRGEAVHYREHALELGVPDDAILVEPTARNTGDNIARSRELLEARGTKVDSVTLISRPYQQRRAYATCRKLWPEVKVLCASQPLPLDEYIRSIGDVDRVVNMLVGDTQRISLYAQRGFAIPQDLPGQVDRAFQSLVTHGYTARLLT
>NZ_CP024894.1|WP_009082119.1|6481847_6482441_+|TetR/AcrR-family-transcriptional-regulator
MRRTQQERSDATRAALIKAARDLFGARGYHDVPAEEITRTAGVTRGALYHHFGDKQGLFRAVVEVLERELTAEVSAVLDGAADPLSGLSSALGVFLDACLRPDVRRISLTDAPAVLGWDAWRDLEAEYGLGLVAENLAAAREAGLIVDTPVDALAQLVLAAVMEAARMIANADDPDRVRGDVQQVFSGWLSGLLRPR
>NZ_CP024894.1|WP_009082116.1|6480976_6481843_+|alpha/beta-hydrolase
MSGYEELGTARHVNLPQGELRYFEHGRGRPVVFVHGVLTSALLWRKVVPSVADAGFRCLAPDLPLGAHPVPMRSDADLSAPGLATLLGDFLTALDLEDVILVANDTGGAITQLLLARYPERVGRVVLTPSDSFEYFFPPIFRPLPKVARIPGSMAVLGQLLRIKALYRSPLLFGWVTKRPLPPDVADEYLGKLRKSPGLRRDLRKFLRTVDSSHTLAAAEKLRQFKRPVLLVWPPEEKLFPISLAHRLAEVLPDAELVEVPDSYTFVSEDQPAALAGHITRFAAAMAD
>NZ_CP024894.1|WP_009082114.1|6480450_6480870_+|hypothetical-protein
MLTTSAPLPSSADAGTRLRRAGLRVTTARQVVLEVLAENPHVTVAELLPLVRARLSMASTRGVHDVLTTGVAAGLVHRFDHVGVAQRYELSGFDHRHLLCRRCGRLEAIPGTPAESAEETVSGLCSRCDSAEQLSASAS
>NZ_CP024894.1|WP_037715240.1|6479909_6480332_-|transcriptional-repressor
MDEFGARLRDKGLRNTPQRRAVLAAVARTPHVTAAEIATVLDADGAVGALSRQGLYNVLEDLVGARLLRPLEPAGSPARFELETHDNHHHLVCRGCGRIQDVPCAVGAAPCLEPGPVPGFRVDQAEITWWGMCADCEAKA
>NZ_CP024894.1|WP_037715243.1|6489986_6493337_-|TM0106-family-RecB-like-putative-nuclease
MYTPSDLADLLECEHRSILKQALAAGIPGAPRPTSSPDRLAVKHGRAHEAATLGRLRSERTQVVEIEEHDPVVAAKATEEALRAGAPVIYQAVFHDGEFSGRADFLLRDDQGRYEVYDTKLARHAKPSAVVQLTAYADALRRAGWPTGPEMHLLLGDGSTRSLRVDDFLPLVDRLRDRLQDRPPQLPDRIWADERPACTGCAFAEHCASAREADRDLSLVAGMRSEQRRKLVTAGLGTIDALASADPADRPRDMSEGTFASLRAQAAIQVRQDETGELAYEIIAPDALAELPEPSPGDVFFDMEGDPYALAGTGLEYLFGAVTPDGRFTPFWAHSRAQEKRAFEEFIDLATARLAEHPDAHVYHYAPYEVTAIKRLAAVHGTREEAVDELLRSGAMIDLYAVVRKALRVGQRSYSIKYLEPLYMPEARAGEVKTAVSSIEAYEDYLTLSSAGNTEQADEVLRGIADYNEYDCVSTLRLHEFLHRVRTEAGIELAEPAPESEVDALLRRTEEEEAAQRRAERAAAMAALVDPLLDGLPDDPADFTPDDHARALLAASVGYHRRETNPAWWEFFRQLAAPISDLEVDTTCAVPVSVTAGEWVPPSGRLRTAKRTLVVRCDPDRPHPYAPGDDVRLRYGADARDAKVVSATAVEVTLEESSAPDKTSNDLPAAVLPGSPVRPSPKDEAVADLARLVGETLPALPSHPGVDLLRRIPRLRGGLPEPGEDLVATVITAVDRLDGSVLAVQGPPGAGKTYLAGKLIAHLVRSGRTVGVTSNSHKAVENVLSAAMENAPEMACAKRAKRTPDPSLPWEQPKTNTALVRWREENNTGHLVGGTAWTFANAAVREEPFDVLVIDEAGQFALADALAVSMCAKNLVLLGDPQQLPQVVQGTHPAGAEASALGHLIGEADIIPPELGYFLDLTRRMHPDVCAPVSNLSYAGLLHSHPTAERSIDGFPSGLYLASVEHRGNTTRSVEEAEQVVSVIKSLHGRTWEGRPLTDADFLVVAPYNLQARVVTRALSDAGFGDVRVGTVDRFQGQEAPVVVTTMTSSSAVDLPRGLDFLLSRNRLNVALSRAQSVAVLVCSPKLLEADIRTVDQMRLVSGMLGLLRDAREWID
>NZ_CP024894.1|WP_100266927.1|6493913_6494453_+|GNAT-family-N-acetyltransferase
MSDVTIILPLPRTEAGAALQLRPWRAEDLPVLVAAHRDPLMRRQLTTSLVDEGEARRWLDAQVSGWESATRFSFAVVGDDDLPLGHVVVKVRGAGTAEVGYWTAAPARGRGIAARALETTSRWAFGAQRLNRLDLLHAEDNPASCRVAEKCGYVLREVLPPAPPEFPGSGHRHVRDAAA
>NZ_CP024894.1|WP_037715246.1|6494462_6495680_-|sigma-70-family-RNA-polymerase-sigma-factor
MSDVREAITRAHREEWARVVASLTKRFGDLDVAEEAAAESFATAVERWPVDGVPPNPGAWLTTTATRKAIDRIRRENKRDDKQREAQPRYDSAPPHLIDDDRLRLIFTCCHPALAAESRVALTLRMVGGLTVPEIARAFLVSESTMGQRITRAKAKIKAARIPYRVPAAEDLPTRVSGVLTVLFLAFNEGYLATGPDTDPVRHDLTAEAIRLTRLVRALLPDDGEVTGLLALMLLTEARRPARVSASGELVALDEQDRTRWDAPLIAEGHRLVRERLATGVAPGRYQILAAINAVHTSARDMRETDWSQVLALYDQLARIDPSPIVALNRAIAVAELDGPEAALDVVDRLADRLAEYHPYHATRADLLRRLDRAEEARAAYQRAIDLAGNTAETAALSRRREELG
>NZ_CP024894.1|WP_009082141.1|6495676_6496000_-|hypothetical-protein
MQYLISVVHDQPTLATPEEDAAIDVFNERLQTGNHWVFAGGLAMPETATVIDNRGGAALVTDGPFLESKEYLAGFWVIEAPDLDVALKLAAEGSKACNRKVEVRPFQ
>NZ_CP024894.1|WP_009082143.1|6496024_6496645_-|dihydrofolate-reductase
MKLVTMTQMTVDGVVQGNGGASEEDRRNGFERGGWALGKGDHETLAFINETYRRADAFLFGRRTYDLFAGSWGALRAEDVPGQERILRALNERPKYVASSTLTDPKWSGTTALTGDLAAAVADLKARPGGELQVHGSGTLVRWLLEQGLVDEMIFLVIPVVVGQGERLFPRNGPDLALDLVESRVDARGVTTQIWRPAGRPQYAGR
>NZ_CP024894.1|WP_037715249.1|6496765_6497605_-|aminoglycoside-phosphotransferase-family-protein
MSHPVPADLLEIAETLVPGAPIGSARLAAQGNMHHVVLLPGVAAVRISKRPDSAAELPRRVEILRAVAAAGLPFAVPEPLTPVTSFGDRAAVAVSWLDGEGLPEGVGDPAAFGPLLTALREAEISPALEAVLHRPRRYANGLGWAELVADVLPRLPGKWQDGVRQRLDTLLALEEVPPRLVHGDLSGGNVHFGADGKLTGVLDWDLASLSDPAIDAALVATWHGWEVLRAAADEETCRRAWAWNDLIGVEHLHAVFAGKPLTSVDGFVRAVVAWLEARG
>NZ_CP024894.1|WP_009082154.1|6497621_6498530_-|ribonuclease-Z
MSRRELVVLGSASQTPTRHRNHNGYLLRFDTDGILFDPGEGTQRQLMYAGATASELTHLCVTHFHGDHSLGLAGIIQRLSLDNVAHPVRCHYPASGQQYFDRLRHSTSFHERAELVPLPISAPGPLGGALSAYPLEHRIDCFGYRYTEPDGIRMLPDALAAAGVQGPAVRKLQADGVLETANGVVRLEDVSVPRRGQVVAFVMDTRLCPGAFACAREADLLIAESTFRADDADLAYRYGHLTSTDAGRLAAESGARKLLLTHFSQRYPYEEADRFRDEAAKVFDGEIHVARDLDVVPLPPRR
>NZ_CP024894.1|WP_037715251.1|6498655_6499633_-|NAD(P)-dependent-oxidoreductase
MTAGLGADSTTGEILLTGATGFIGSAVLRALLARGAAVRVLARGAVPEWITRSGARIHRGDLTDAASLAGACTGVATLVHAASRIGGTEEECAEVNDRGTARLLAEAHRAGTRRVVHLSTCAVYRDGEHRGGPEDLLDLGPASATSRTRLAGEQQVRAAGGLVLRPHLVYGDGDRHVVPALVKLLRAVPAWAAGGEARTSVVSSWDLAAVLTAFALDPALGSPGEVFHVADPEPVRMRDLLEAVCTVLDLPVPDADLPLAEHRARAPWLSEHQWSLLARDHWYASDKVWKVTGVSPGPGLGVRMAQSRNWYRETLAIPEDRIRGK
>NZ_CP024894.1|WP_009082158.1|6499629_6500598_-|hypothetical-protein
MVGTLLEESVRRTFITDGESLPGGRPVDFQQTIPRNLVHRAAISEVFVTDLNIVAEGQFEVGAQWPRRHGFFGPCAPGSHDPMLFAETCRQAGLLIAHRAYGVSLGNAFISDHKVSSITPEGLATEGRPIDVVLRVSAHEPVFRSGNLIGMRTDFGCFRDGELIGTASENWRCVSPAVYRRLRGDHFAATPFQACALETVDPVLVGRYRAEDVLVADTAVAGTWSLQFDPDHPVLFDHSADHVPGMVLLEGARQAALLTIGDPHALPLRSDFEFSAYVEFDSECLLVAEEIEPDADGCRSVRVVAEQKGRTVATGVLAMRRS
>NZ_CP024894.1|WP_009082160.1|6500778_6501411_+|TetR/AcrR-family-transcriptional-regulator
MARQERAEQTRKAILDAAASRFDAVGFLGASLSDILAEAGVTKGALYFHFKSKEELADELIREQFIVQTPLADFDNPGLQAAIDLSQNMGHSLRSDVRVRAGIRLVIEQGSFVAPAANAYKQWIDTVHGMLLAAKAAGDVRKDVNAHDLAQYVVASFTGSQLSSQVLTGRTDLHERLTFMWQTILNAVVPPRRLHKFNPAGTAPAHAETK

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Crispr_ID: NZ_CP024894_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_9

6708529-6708700

Orphan

Consensus_repeat	Method
TCACGCTTCACGGTCACGCACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024894_9

>merge|NZ_CP024894|9|6708529-6708700|CRISPRCasFinder
TCACGCTTCACGGTCACGCACGGAACACACCTCCGTTCGCATTGTCACGAATCCGCTGTCGATCGGTCACGGAACTCACGCTTCACGGTCACGCACAGCTGTCCACCTCCGCTCGCTGACAATTCATCGGAAAATGACAACAGCTCGATTCACGCTTCGCGGTCGCGCACGG

>NZ_CP024894|9|8|6708529-6708700|CRISPRCasFinder
TCACGCTTCACGGTCACGCACGG	AACACACCTCCGTTCGCATTGTCACGAATCCGCTGTCGATCGGTCACGGAAC
TCACGCTTCACGGTCACGCACAG	CTGTCCACCTCCGCTCGCTGACAATTCATCGGAAAATGACAACAGCTCGAT
TCACGCTTCGCGGTCGCGCACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_037715343.1\|6707226_6708435_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP024894.1\|WP_086024915.1\|6700389_6700668_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NZ_CP024894.1\|WP_037715356.1\|6719766_6719988_-\|DUF3618-domain-containing-protein	unknown	unknown	gnl\|CDD\|378834
NZ_CP024894.1\|WP_037718254.1\|6709056_6710277_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP024894.1\|WP_009082436.1\|6698518_6700342_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NZ_CP024894.1\|WP_037715354.1\|6718648_6719128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240289
NZ_CP024894.1\|WP_009082444.1\|6702589_6703534_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP024894.1\|WP_037715350.1\|6717828_6718428_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP024894.1\|WP_037715339.1\|6704395_6705970_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP024894.1\|WP_037715347.1\|6713603_6715286_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP024894.1\|WP_037715336.1\|6697182_6698373_-\|kynureninase	unknown	unknown	gnl\|CDD\|226363
NZ_CP024894.1\|WP_009082464.1\|6720510_6721515_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP024894.1\|WP_009082440.1\|6700678_6702139_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236740
NZ_CP024894.1\|WP_009082442.1\|6702140_6702593_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|273298
NZ_CP024894.1\|WP_037715341.1\|6705977_6706874_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP024894.1\|WP_009082460.1\|6716296_6717757_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NZ_CP024894.1\|WP_078560963.1\|6721562_6722030_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009082446.1\|6703530_6704292_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP024894.1\|WP_009082459.1\|6715410_6715977_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP024894.1\|WP_037715345.1\|6711259_6713440_+\|phospholipase	unknown	unknown	gnl\|CDD\|376607

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_037715343.1\|6707226_6708435_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.07e-34
NZ_CP024894.1\|WP_086024915.1\|6700389_6700668_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	1.75989e-22
NZ_CP024894.1\|WP_037715356.1\|6719766_6719988_-\|DUF3618-domain-containing-protein	gnl\|CDD\|378834	pfam12277, DUF3618, Protein of unknown function (DUF3618). This domain family is found in bacteria, and is approximately 50 amino acids in length.	2.30179e-13
NZ_CP024894.1\|WP_037718254.1\|6709056_6710277_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.28882e-57
NZ_CP024894.1\|WP_009082436.1\|6698518_6700342_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	5.22065e-152
NZ_CP024894.1\|WP_037715354.1\|6718648_6719128_+\|hypothetical-protein	gnl\|CDD\|240289	PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional.	0.0023361
NZ_CP024894.1\|WP_009082444.1\|6702589_6703534_-\|1-phosphofructokinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.18784e-118
NZ_CP024894.1\|WP_037715350.1\|6717828_6718428_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.30557e-12
NZ_CP024894.1\|WP_037715339.1\|6704395_6705970_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	3.23656e-159
NZ_CP024894.1\|WP_037715347.1\|6713603_6715286_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.16473e-56
NZ_CP024894.1\|WP_037715336.1\|6697182_6698373_-\|kynureninase	gnl\|CDD\|226363	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism].	8.41211e-140
NZ_CP024894.1\|WP_009082464.1\|6720510_6721515_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.12882e-11
NZ_CP024894.1\|WP_009082440.1\|6700678_6702139_-\|hypothetical-protein	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	2.8688e-125
NZ_CP024894.1\|WP_009082442.1\|6702140_6702593_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|273298	TIGR00848, Includes:_Phosphotransferase_enzyme_IIA_component, PTS system, fructose subfamily, IIA component. 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	1.1869e-39
NZ_CP024894.1\|WP_037715341.1\|6705977_6706874_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.17414e-59
NZ_CP024894.1\|WP_009082460.1\|6716296_6717757_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	7.03105e-113
NZ_CP024894.1\|WP_009082446.1\|6703530_6704292_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.16575e-85
NZ_CP024894.1\|WP_009082459.1\|6715410_6715977_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00168795
NZ_CP024894.1\|WP_037715345.1\|6711259_6713440_+\|phospholipase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.97163e-06

>NZ_CP024894.1|WP_037715343.1|6707226_6708435_+|MFS-transporter
MTTEATSRLTAPLRNVEYRVLWAAEAISSAGDQLAKVALSILVYHRTGSALWAAVVYALTFLPALAGGLGLSFLADRYPRRAVLSVSAAAQAVLVGLMSLPGMPLPALCLLLVAVQLAASPANAAQNAITREVFTDDHLYLRSQDLRGITTNTVQLLGLAGGGVLVTAVGTSWALAIDAVSFAVASVIVRVWVRDRPAAGGEHSTWFSATRWVFGQRKLRVLIALSWLVGLAVVPEGLAAPLAQQLNAPSAAVGWLLAADPLGFVAGAYLLSKFASAAVRQRLLGVLATASLAMLALFLLRPNLVVALVLLALAGAMGAYIITVTATFSTWVPNELRGGAGGLYRTGLRVAQGIGVALGGVVAQATGSAVTAIALAGLAGVALAIPTAFSWTRVRHAVAAGA
>NZ_CP024894.1|WP_037715341.1|6705977_6706874_-|SDR-family-oxidoreductase
MDRLLQDRAVVVTGAGRGLGEAFAVHVARAGGAVVVNDVDADLAERTAETIRGHGGRAVANGHSVADPAQAQAIVDQCVAEFGRIDGLVNNAGLNYEALPWEDDAEQARQLVEVNVLGVMYTGLAAIRAMVGAGGGGSIVNISSGASLGQRKLGVYSASKGAVASLTYSWALDLEDSGIRVNAVCPVAHTRMVWKSERALRACPPERTPAKIAPLVLFLLGEGSHGITGQMIRCNGPQLHVMGQPYLKQPILERPDWDTETVQEAFDEVFSAHLENYGLEKRVPPRLRKWTENSIRAS
>NZ_CP024894.1|WP_037715339.1|6704395_6705970_+|phosphoenolpyruvate--protein-phosphotransferase
MSLSGVGVSPGQAQGPRVVVATDLRKPENQPVPADLAGEAGRIGPAAARVAARLSDRARSVSGDARSVLETTAAMAADPALLASAEQLVREQSLPAPRAVWDAAAKFMAALEAAGGYLAERARDVADVRDRIVADLLGVAPPGVPDLTSPSVLVARDLAPADTAGLDPELVLALVTEEGGPTSHTAILARALGIPAVVACSGVLAADSPGLAVDGSAGTVSPSDGSVRAASRKPRAEWDGVGALADGHPVKLLANVGSAADSRAAADAGAEGIGLFRTEFCYLAAAEEPSVDAQRAAYAAVLAPFAGKPVIVRTLDAGSDKPLAFLDMGDEPNPALGVRGVRVAFDRPELLDRQLTAIAGAAADTGAELSVMAPMIATAAEARWFAERARAAGIARAGVMIEVPAAALCAKEILAEVDFVSLGTNDLTQYVFAADRQLGAVAALNDPNQTALLRLAGMVAEAGAAAGKPVGVCGEAAADPGLAPVLAGLGVTSLSMNSAALAAVGATLRTVDLPACREAAAKAR
>NZ_CP024894.1|WP_009082446.1|6703530_6704292_-|DeoR/GlpR-transcriptional-regulator
MYAAERHQLLAQRARRDGRVDVGDLAAELGVAPETIRRDLGVLERQGVVRRVYGGAVAVDRLDFEPEVAQRDQTNAAEKDAIARAALDQVPDRGSVLLDAGTTTSRLATLLPADRDLTVITNSISIASILATRPGITLQILGGRVRGTTLATVGSASLHALDGLLADVAFLGANGFSAEHGCTTPDLEEAGVKSALVAAARRRVLLADHSKYGADQLSRFARLSEIDVLITDGGIDAGAVAELEEAGPEVVLA
>NZ_CP024894.1|WP_009082444.1|6702589_6703534_-|1-phosphofructokinase
MIVTVTPNPSLDRTAQLSELRRGEVLRASRVRLDPGGKGVNVSRALAAAGSPTVALLPAGGSVGERLADLLAPEGVPVVAVPIAGTTRSNITLVEADGTTTKINEPGPEISPAELAVLQQRTVELAARAEWVVCCGSVPAGVPDDFYAQLGKLARDAGAKVAVDSSGAPLAAALAAGPDLIKPNLDELAELAGRPLPQLGDVVEVCRGLVADGVGAVLVSLGARGAVLVDRAETRHALGPLVAVRSTVGAGDAALAGFLHAGGTGPQALRAAVAYGTAAVAQEGSRMPAPQDVHPDQVRLLAADPTLTLSGAAA
>NZ_CP024894.1|WP_009082442.1|6702140_6702593_-|PTS-transporter-subunit-EIIA
MTTSDLITADLVDLELAAADKNAAVRALAGRLVSAGRVTDLELFLKDVAAREEQMATGLEGGIGIPHCRSAAVTAPTLAFGRSAGGIDFGAPDGPAKLIFLIAAPDGADSAHLKVLAALARRLVRAEFKQTLLDGTDPAAVATYIREEVS
>NZ_CP024894.1|WP_009082440.1|6700678_6702139_-|hypothetical-protein
MKFVAITACPTGIAHTYMAAESLEQTAKANGDTIVVETQGSAGSEPLSAADIAEADAVIFAADLAVQGRERFAGKPIVEAPVKAAINDAAGLFERAKAAAAEPPAAPPAAAAEPELTTKVGEHDRLGSRIRQWLMTGVSYLIPFVAAGGLLIAVSFALGGYQIANAPKVTEHFDAGSLAGWAALMFQIGSVAFQFLVPVLAGFIAFAMADRPAIAPGFVGGAISVAIGAGFLGGLVAGLFAGGVVLGLKKIRVPKAMRGIMPVVVYPLLGTVVVGVLMYVVVGKPIAIATTGLTHWLNSLSGTSAVLLGALLGLMMAFDMGGPVNKAAYAFAVGGLTTGSAGSLQIMAAVMAAGMVPPLALALASTVRKKLFTAAERENGRAAWLLGASFITEGAIPFAAADPFRVIPSIMAGSAVTGALSMAFGATLRAPHGGIFVVPLIGNPLLFLVALVAGTLVAAASVVLLKQLRFRSAESAAAVSAHPVNA
>NZ_CP024894.1|WP_086024915.1|6700389_6700668_-|HPr-family-phosphocarrier-protein
MYQRRIVVASSVGLHARPAGLVAQAAAAQPAKVRIAKVSGGAAGDPVDAGSVLSLMTLGAAHGDEVELSADGDQARESVDVLVELIAKDLDA
>NZ_CP024894.1|WP_009082436.1|6698518_6700342_+|long-chain-fatty-acid--CoA-ligase
MTQSIAEQAEGQTIPLLLRRNAVEHGDRPALTSLDLEGRPTLTWSEFRTAIAEVSRGLAGLGLAAGDRMLIMAPSSPDHLVADLAAVHLAAIPCTAYATLSPDQIRYVARHSAAPVVVLAGADEVSRWRQVLDDLPALRRVAVMDESAIPDGDDRFVSFSAVREAGRAALAADPEAFDRAWQAIRPDDPLAMIYTSGTTGDPKGVVLSHRNAIHESIAVHSLHHVPMHSTNIAYLPLAHIAERALSIYIPIVAAGHVHTVGNPSDVVTALGQVHPQSFFGVPRVWEKMVASLKNMLAGLPEDRREALVSANELLQEGYKLRSAGKEVPADLAERIAKTDETVLAPVRALLGFDNLYIASSGAAALPLEVLYFIAGLGVEIREVWGLSETTGAATANSADAFRAGTVGRPIDGVEVKTGEDGELLVRGPIVFLGYLQADGTIESATDADGWFATGDIGTIDDDGYVTITDRKKELIITSSGKNIAPTRIEGLLKEHPLIGQAVAIGDGRPYVTALIVLDDEIAPGWAAANGVEADGIDALAAHEAVQAEIARAVESANSRLARAEQIKKYQVLTTAWTPETGELTPTLKLKRRVINDRYRPDIASLYA
>NZ_CP024894.1|WP_037715336.1|6697182_6698373_-|kynureninase
MTESAVRSESLADEAAALDAADPLAAKRAEFDLDPEVAYFDGNSLGAPPKHVAERVSQVIRQQWGRRLIRSWTEGWWEAPQRVGERIAPLVGAAAGQVVVADSTSVDLFKVLVAAVRANPGRDELLVDAGTFPTDGYVADQAARLTGHTVRRVPVAELPGAVSERTAAVLVNHVDYVSGRLHDMPSVTEAVHAAGALAVWDLCHSVGAIPVRLDACGVDFAVGCTYKFLNGGPGSPAFVYVAQRHQAEFDQPLAGWAGHADPFGMEPGYRGSAGIARARAGTPDILSMLALDAALDVWDDVDLSVLRAKGLALGDFFFRCADELLPGADIPTPREHTRGHQVSVRDAGGQQTMNALHERGVLGDFRPPDVLRFGLAPLYTTYAEVLRAVTVLREVR
>NZ_CP024894.1|WP_037718254.1|6709056_6710277_+|GGDEF-domain-containing-protein
MIAFLLAWDAIAAALLTFGVIASPSPDLVDWGRFAILAGCATVHIQLTRRQEERRRNRVTAVHIDLTGIWVFPAALLLPIPLTLLLIALLRVQRWFNSRRPPHKFVFTSFTHAVSALLAHHLYQTFASAELARLSPANSLQVFGILMLVGFSYAALQAIVIGGLLALGGTSAPTLRNVLGTKDDNLLELSTISLGTIATILLVNIPPAIVILVLITVLGNRLAEINQLQSEARTDPKTGIFNVRGWSESAERALARAARGGETLALLMIDLDHFKWINDTYGHPAGDDVLRTVAQTLDEITRPKDIIGRFGGEEFLILLPDVDTTAAKVTAERIRTAIADQRIVTTDKRGGSALITGRTASIGVALLGVNGTALEQLLQAADAAVYTAKEGGRNQVRFADANLPSE
>NZ_CP024894.1|WP_037715345.1|6711259_6713440_+|phospholipase
MPATDDRAPAAVRVRRPWSTSGWLLLVLLVVFGFGLIASRPASPPDQGPPTGGVLAARNAVDALTHPDGQATALALLPKDFTAVTGVKPGALPARDGTVRAAHLDGGCSAPWGDDNTKWDFSVPCKAHDLGYDLLRYANDKGHPLDQSARAALDDRLEQDMHRTCELNPMNSERTCQLVASVFTGGLVLNSWHQRWGPPVGDPIGPMVAGVLVIGCLLVMRLRGWHTARRTTPRPRLPRGVPRPWAVLGISGAVLLMIGESATALADWAGAPEATWWPLTWLAQLTPLLFFSGGLANAAGWRAERDRGYRHYLAERSSPLLRPALIFAVVALIVPLALELLGIPAGTNATVMRIALHPLWLLGVYLLTVIGAPMLLALYRRTRLWSVAALTAVVVAGELAASWTDVSWPRYAATLALALLAQQVAFAYADGVRPRRPVLAVAAVSGVAALAVAVFAFDASPVLLGNPGAPAALSARPWTVLLLGVSQLGLVGLLAAPLRRWAARDRVVRTAGLMLRAPMSLYLAFLAAMLLLVAVVYLPGPIANGLSWLLQPRMLAAVALLLVPAALVFWWFERHPAKPGKTSAEAPVAPRPYHPTGRRSVLLTRAAATLGIGYATLGVFGLALARFGAVAADADVLGLRLDPVQSLVHLLLGVLLLHAVRTGAAATSAATWFAAALTCVPSLVAAAGGETHGSAVVVLHLLTAVFALVGAGSCMVPARRAAAAAS
>NZ_CP024894.1|WP_037715347.1|6713603_6715286_+|LCP-family-protein
MDYPPRNGQGDRRPARSWQDQPGRGPARRPGPPPRSRREPQATGPSRRPGPPPRRPSGRSRRGGLRGAKIALTVVSLLVMGLTGYAWASLQGLVNGLSYSDVIGEGAGGEKPADGARDILLVGLDSRTDAQGNPLSPELLAQLRAGESDGELNTDTLILVHIPNDGSKAVALSLPRDSYVDIPGYGKHKINSAYARAMLQARKDLQAQGVTDPKELDVKANQAGAKLLIATIQQLTGSTIDNYAAINLLGFSDITKAVGGVDVCLKDNVNDEYSGANFTKGQHTISGVEALEFVRQRHGLPRGDLDRVVRQQVFMAGMARKILSAGTLTDPSKLNALVDAIKKSVVLNQNWDIFSFAQQMKGLTGGQLEFRTIPVDNVEYRTPNDGVAVKVDPAKVKAFVQGLAGPQAGADGAPAQQKAPKPDESHKDTTVDVRNASDRTGLAATVSKQLADKGFTAGDTDNASSRKTTVIWVPSGGEAAGQAVADALGTKATVQEDKSVPKGHVKVFLGSDYQPSAGASSGTGAAQAPPAQQQSAPPSTPTGPGSDDQPITADGVPCVN
>NZ_CP024894.1|WP_009082459.1|6715410_6715977_+|helix-turn-helix-transcriptional-regulator
MIDAEHYQRVLGDELRKLRRGRGWTRKELNAHLQSEISLQTLATYELGTRQCSVVRLVELCVAMDELPQDLLAKVHSRVFTEEPGRVRVDLRRVVAEAGPELTPLRRWAEGRLRQNGVAMPAAPAAASASGSSGTPTSSAPAASGQPASASASADEVSFDFAALERMAELCGLPTAELVSHLRKLAPA
>NZ_CP024894.1|WP_009082460.1|6716296_6717757_-|NAD(P)/FAD-dependent-oxidoreductase
MGNRTETGVIVVGTGFSGLGMAIQLRKDGRDDFVVLEKAHDVGGTWRDNSYPGCACDIPSHMYSFSFEQNPGWSRAYSPQPEIYEYMRGVADKHDLRRFIRFGQEMTGARWDAEENRWHVSTRGGDEFVAPALVAGVGALHRPMIPDLPGIERFQGRAFHSAEWDHDFDFAGKRVAVVGTGASAVQFVPKIAPEVAELTLFQRTPPWVMPKADRDMPGWLRGLFRAVPPAQRLYRNFLYWTLEARAIGFNGQPWIMKIGQRLAKSNIDRAVKDPELRAKLTPDYTMGCKRVLISNDYYPALARDNVDVVTDGVAEVREHSIVDQAGVEHEVDAIVYGTGFHVTDAFDSLEIVGRDGRNLAKEWASEGMRTHLGITVNGFPNLFFLLGPNTGLGHNSVVFMIEAQISYIAQALRLAGDRALDPREDVQERFNAQVQRKLEKGIWTQGGCKSWYLDAKGVNRTLWPGFTWRYWLDTRTVRREDYELLG
>NZ_CP024894.1|WP_037715350.1|6717828_6718428_+|TetR/AcrR-family-transcriptional-regulator
MTTAKRKRMPRAERERQMIEVAEQVFGERGYAMASMDEIAELVGVSKPMLYEYFNSKEGLLLACIRQSRAALQEATEQSIVGAESAQDALRRGLLAFFVFIRERRQAWSLLRHEMALIGTHAADEIEETRRQQTDLITALMSGYFDSEDTLRAEASAEFVVGACERLAIWCERFPEVTPEKATEYAMDLLWAGLSQRAI
>NZ_CP024894.1|WP_037715354.1|6718648_6719128_+|hypothetical-protein
MVETITATYEHDNDDWTITVSGRGKELTGKAPGIIAARDRADQLVEKLAPNERPTVVHLLNGNALEFTSAYMAARLTLPEIEPLEIPPSGGAKAAKEASSESKAETPAAAPAAKKDKAAKPALPPSKQLPKEVEDRKPDEASRPGVTAGASATPPVARA
>NZ_CP024894.1|WP_037715356.1|6719766_6719988_-|DUF3618-domain-containing-protein
MARDPETIEREIEQARTALAATLDQLGTKASPQKLAEQAKDGVRAKLDNPKVKYPLIGAGVLVAVLLVRKLFR
>NZ_CP024894.1|WP_009082464.1|6720510_6721515_+|hypothetical-protein
MRVRRPVGCGARIARVWSGGSPLRCGAGRPQRRRVRAGSRCRRRSCSGAPKPSGSARIWEPRPTGTRAATRPPRGCSRPLRRCGGRADGVAGRCARLEPERAGRGLLDRAGEGPGSGQRGRRLRQTSPGDRLERPSRRGRGHPAQNPHAGLGSPSTSVITWAGYDAPQTLTDAASTSYADNAEHSLRAFQEGIGAAHQGPVNTTVIGHSYGTTAVGHTARDLGLPADNLVMVASPGVGVDHANQLRLDAVPQDQVGQHIYSTKALTDPVPALTNLHSPQAEPFDPLGPDPATDYFGGQTFESDPGHVAGAHSNYWVDRSPSLRAMGNIIAGNKP
>NZ_CP024894.1|WP_078560963.1|6721562_6722030_+|hypothetical-protein
MAIAVFALASCGGASMQPTVSAAQARETALASAHAAAAAIFPPGYRLTDDFAPQLSCTDDNDQATGQIHVSVSMWVDGPDRTRNDSYYEKLKKWWTQNGWSLESDNRPRDLFANAQRDGYLMSLEGTVTGPDKGRLNIGVSSPCIWPNGTPEPRS

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Crispr_ID: NZ_CP024894_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_10

7165609-7165682

Orphan

Consensus_repeat	Method
CCCGGCTGGCCGAAGCCCTGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_10

>merge|NZ_CP024894|10|7165609-7165682|CRISPRCasFinder
CCCGGCTGGCCGAAGCCCTGCGGCGGCTGCTGGCCCGGCTGCCCGGGCTGACCCGGCTGGCCGAAGCCCTGCGG

>NZ_CP024894|10|9|7165609-7165682|CRISPRCasFinder
CCCGGCTGGCCGAAGCCCTGCGG	CGGCTGCTGGCCCGGCTGCCCGGGCTGA
CCCGGCTGGCCGAAGCCCTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_100266954.1\|7173025_7173643_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_086025013.1\|7163847_7164384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_037718364.1\|7167576_7168461_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379274
NZ_CP024894.1\|WP_009083184.1\|7159809_7161012_-\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236182
NZ_CP024894.1\|WP_009083175.1\|7151715_7152279_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|376829
NZ_CP024894.1\|WP_037715605.1\|7171596_7172871_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP024894.1\|WP_009083187.1\|7161846_7163004_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|236104
NZ_CP024894.1\|WP_009083190.1\|7166172_7167543_-\|cystathionine-beta-synthase	unknown	unknown	gnl\|CDD\|273464
NZ_CP024894.1\|WP_100266953.1\|7157768_7159805_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP024894.1\|WP_037715602.1\|7169882_7171415_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP024894.1\|WP_037718367.1\|7177413_7179405_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235962
NZ_CP024894.1\|WP_009083181.1\|7156876_7157728_+\|immunity-49-family-protein	unknown	unknown	gnl\|CDD\|373949
NZ_CP024894.1\|WP_037715607.1\|7176479_7177196_+\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678
NZ_CP024894.1\|WP_009083196.1\|7173791_7174652_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|378959
NZ_CP024894.1\|WP_050788336.1\|7163105_7163762_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP024894.1\|WP_009083185.1\|7161108_7161372_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009083192.1\|7168599_7169820_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181146
NZ_CP024894.1\|WP_009083197.1\|7174973_7176461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227268
NZ_CP024894.1\|WP_009083179.1\|7152614_7156871_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223039
NZ_CP024894.1\|WP_009083178.1\|7152309_7152615_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371259

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_037718367.1\|7177413_7179405_+\|SDR-family-oxidoreductase	gnl\|CDD\|235962	PRK07201, PRK07201, SDR family oxidoreductase.	0
NZ_CP024894.1\|WP_009083184.1\|7159809_7161012_-\|threonine-ammonia-lyase	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NZ_CP024894.1\|WP_009083175.1\|7151715_7152279_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	7.41759e-07
NZ_CP024894.1\|WP_037715605.1\|7171596_7172871_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	3.04552e-51
NZ_CP024894.1\|WP_009083187.1\|7161846_7163004_-\|cystathionine-gamma-synthase	gnl\|CDD\|236104	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.	0
NZ_CP024894.1\|WP_009083190.1\|7166172_7167543_-\|cystathionine-beta-synthase	gnl\|CDD\|273464	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. [Amino acid biosynthesis, Serine family].	0
NZ_CP024894.1\|WP_037718364.1\|7167576_7168461_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|379274	pfam13576, Pentapeptide_3, Pentapeptide repeats (9 copies).	1.43976e-05
NZ_CP024894.1\|WP_009083181.1\|7156876_7157728_+\|immunity-49-family-protein	gnl\|CDD\|373949	pfam15575, Imm49, Immunity protein 49. A predicted immunity protein with an all alpha-helical fold and a conserved proline residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-REAse-1 or Tox-REase-6 families.	5.09985e-43
NZ_CP024894.1\|WP_009083179.1\|7152614_7156871_+\|hypothetical-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	1.03278e-18
NZ_CP024894.1\|WP_037715607.1\|7176479_7177196_+\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	8.99444e-32
NZ_CP024894.1\|WP_009083196.1\|7173791_7174652_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|378959	pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1 region of the receptor molecules is conserved from bacteria to humans.	1.96359e-90
NZ_CP024894.1\|WP_050788336.1\|7163105_7163762_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.00092969
NZ_CP024894.1\|WP_037715602.1\|7169882_7171415_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.08871e-127
NZ_CP024894.1\|WP_009083192.1\|7168599_7169820_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181146	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase.	0
NZ_CP024894.1\|WP_009083197.1\|7174973_7176461_+\|hypothetical-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	4.84164e-05
NZ_CP024894.1\|WP_100266953.1\|7157768_7159805_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	3.97491e-13
NZ_CP024894.1\|WP_009083178.1\|7152309_7152615_+\|hypothetical-protein	gnl\|CDD\|371259	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm. T7SS_ESX-EspC is a family of exported virulence proteins from largely Acinetobacteria and a few Fimicutes, Gram-positive bacteria. It is exported in conjunction with EspA as an interacting pair.ED F8ADQ6.1/227-313; F8ADQ6.1/227-313;.	0.000448417

>NZ_CP024894.1|WP_086025013.1|7163847_7164384_-|hypothetical-protein
MHGLPARQREREFSPAEPAPRRPNGSTAIAAGLFGLVAAATSGYLPARLFLDIPSGFSLGDLSPLTLADLAAYLAASLVLLIGAIATFFRATAGAVLLIAGALLALGALLLEPALGGSPAYAEYFRTLLRFENFAALDRVALAAAVLFVLVLAGLPRTFGYLRYRVPVVPVSAPSRPW
>NZ_CP024894.1|WP_050788336.1|7163105_7163762_-|hypothetical-protein
MTYPQNPQGQPQQPQSGPFPGQPYPASQPTPAQPYPGAPQQPFAPPAAGQPYPAYQGGPGVYQQKPNGATAIIAGILAIIGGIFAIISIIVAVVALSAVHVTIWQLYVGIVVYAVLVGLLFFGGIGLFLHKPAARVCTIVGCGLVIAYTILSAVLTGVATSGYKGSAQMLGAGIGGAVVALIPPVATLVLAIVKPTADWVNYRPEAAAQGGYPAPQAW
>NZ_CP024894.1|WP_009083187.1|7161846_7163004_-|cystathionine-gamma-synthase
MADDYSVLGFETRAIHAGQQPDPRTGAVIVPIYQTSTYAQDGVGGTREGGYEYSRTANPTRTALEEALASLEGARHTLAFASGMAASDAVLRTVLRPGDHLVLGNDAYGGTFRLIDKVLSLWGVEHTVADLSRIDEVRAAMRPETKLIWCESPTNPLLGIADIAALAGVAHDAGARLVVDNTFATPYLQTPLALGADIVVHSTTKYLGGHSDVVGGAVVTNEDELREQLFYLRNAAGAVPGPFDAWLTLRGLKTLALRMERHSDNADLVARTLAKHPKVTKVYYPGLPEHPGHEVAAKQMRRFGGMVSFRVEGGEEAALEVASRTKLFVLAESLGGIESLIEHPGKMTHASTAGSTLEVPEDLIRLSVGIEDGRDLVADLTQALG
>NZ_CP024894.1|WP_009083185.1|7161108_7161372_+|hypothetical-protein
MARAQHGTTSRAQSRTGLLPLAAGILSAVALTGAAFATVEAAGCAGPAQYIRHDNHVELVGGCINGADLPTTTGTRQANAQPENSKP
>NZ_CP024894.1|WP_009083184.1|7159809_7161012_-|threonine-ammonia-lyase
MELVSVERIQEARKLLEGITRVTPMEHARDLRRLHGGPVYLKCENLQRTGSFKIRGAYTRIHGLTAEERARGVVAASAGNHAQGVALASSLLGISSTVFMPLRAPLPKLAATRGYGAEVHLHGAVVDETLAEAIAFSERTGAVFIHPFDHPDVIAGQGTVGLEILEQVPGAKTVLVPTGGGGLVGGVAAAVKALHPEIRVVGVQAEDAAAYPSSLAAGAPVRLRDVHTMADGIAVGEPGKVSYAHVQSLVDDVVTVTEESLSRAVLLCLERRKLVVEPAGAASVAALLQHPGAFEPPVVAILSGGNVDPVLLQQIIQHGMTAGGRYLKLHLRVPDRPGSLVSVLSCVKDLGANVLDVEHSRISGSLALGEVDVALALETRGPEHCKEVEAALADAGFTVV
>NZ_CP024894.1|WP_100266953.1|7157768_7159805_+|hypothetical-protein
MTRPPVPLTAAQQQELVQQIGQAAAAALPAGWQQLQVVCRAAGRHVEVDVAVLAPDNRTYPVQPHPDLPRLLGVLRTGMYQPGRGTWLSATLVFSPQRPPYADYQPDVEPRWRQLPPPIGFQDELRFFPREDRFVPPWLRQRAGVVPGGVAGQPVPPPVPGANPAVPPPLPGAENAPPSTGPGVTPEQPSAPPPLPGQVPPPLPGAENPPPSTGSAVAPEPSTPPPSAGAENPPSSAGPGVTPEQPSAPPPLPGQVPPPLPGAENPPPSTGSAVAPEPSTPPPSAGAENPPSSAGSAAHPERAADAEHSVPALPVDQPSAPPPLPGTENQPTSTADSVPGLPVDEPNTTPPVAATPPLPDLEQAASASDGDEAQSEPSEVAAAQIASQKSESEAVVPKGDSPGSPGELRTPRVYDGFDEAENPVVEREALSAEERERVLAYLDNAPVILASRSNDTDAFDPSRTDAVPLNFRTDGSWVWPGAVAYYLREHGISPDPELVGHIRAVGYTVPEVDEATRDRMLAAMTSPPAEESRPREAEPTADPEQLLGEISTALVAAAPQGWQRIAFDFMALGRHANLACGARMADGSTRQVPVARELSRPLAELRRSKYVRGRGTWYSLSLVVDPPSNYQASFNEDDEPAFHTPPRPEDYALDQELYPRDEDYLPLWFSARLPERPQ
>NZ_CP024894.1|WP_009083181.1|7156876_7157728_+|immunity-49-family-protein
MTAVPRHSVSIDVAWKQIEKLSPQVAFYFDYITQDTSALANVLRRELMLAQYRSVVDPDAEDPDTWGDLGLAAQAAAAAFTAACAPEGQEVDAVIGRPRRFAATGPTPRTDPAAWLTAAWLAVIQRDDVLIQQLAAVPLDVLRASGIEHDAYMYPWVETLQTFLAHREVTPEMFLPAMDGTDPDTAQFTPPAAMLQLVYPPIRMFYYVLRRDSEKFAEAFVSALERHREYWTAEDRSTDPEGFLALAPLAVAVLARSVGMTFDVQSGYTPANLLAGILPPQNG
>NZ_CP024894.1|WP_009083179.1|7152614_7156871_+|hypothetical-protein
MPDANPLVAESKKDGDGPGPFTEGNGDYGYATGINIAESATDAWKGIADGDWVSGGLGVASLAGEIAGAAIDPFGYLMSSVASFLMEHVQPLKDMLDSVAGNPPVIQSYADTWGNVAKALQERQKDLENAVKTGTAEWKGDGADAYRKSAAEAAEAIGGAATVANAIGTVTMIMGQVVAFVRGLVRQLIADLVGKLISWVMEEVFSLGFGTPLVVAQAVTAISKWGEKISELLTKLCETMRRVSPLLGKLAEVFTKIIKVLGKLAGKATGLDVISTKNIKAGGFFHRGGSGGGAGGSGGSGGGHHGGSGDGDAEPGSPSGSRRSNGSDNADGGDGPNSSHNGSDGSDTPGDHSGGSSDSGGRNGSDSPSSDSPSSPGSHSSAPDGTGPSTIDTATSSTRRGSDSPGGSHPDSSPSTLAGDSSPTSRSGNGSSDSSYSPQSSPHSDGPSSVSAPSTTPHSSGAPHSGGSSSSGGGTHSGGNEPSPHHSSSNDSTSASGYAPPRTDAPSPQSAPPQHIRSNDGGGSAPNQSPAGGGIPQQGGGGSPTSAPAGGGSPSPRPSGGGWTGTPGSRAPEVAPNRVPDGGPSGRRPSGGPSTADGGGPSRTPDRSGPGPQRTGDGGSSTPQRTGDGSSAPQRTGDGGSSPRAGDSTGRGGSSPQRPADSSSGGPQRPGDGGEAGQPKRPGTEPGLGRSEPAPTSGGGSPASANRGSGDGSAPPAAAVATGPGGAQRGPEAGGGARRPDGSPEPVARGGARTDAPPAKPGETPRTGKESPAQNGKPQVDEPGKPKDGGKPENAAPDKKPGQHDGAENKPGSDASEHKPEHAAPEHQDPKHHDSDGSNHHDDPGPDGAPPHHDEPLSPDEVNHRHAEDTPAGSSYHRGDPELGDLPHRVQPDPDGRYTVDVHVTADGHARIGDRLYTPEEFADVLRHNGNYDGRPIRLIGCDAGSNDFAHRLSRDLDTEVLAPSKPAWTDSHGRVFSSDYEIGPDGRMRPRIPPDGEWAVHRPDGTAHHVGDDGFAPDGKHHDPHDIDADSSRHRGEDGDDDDLDWRDRPGPDGRTPRENLADPEYIKKHYYEWTDQKTGRTELRIRHSAVDPENPPHPVDLVDGKPVFKHDRPAAEFMGYDDARSGTHAPQRGDATAPEHNGGQHDGGQHQGDHAGHDSGNGQHDQAPAEQHVPGTHSDTSNWREKDYDAIDQKVHDRETKYHELNDTPKDSPEWKDAHNAKNDASEKLGEEASGHAVRDRLHREFTQAHPDQHFDVREHPDAPEGSHRYQIVDGDGNVRADITPRHPIDGEKPGAGNFDHIWEVDYHNGGEPHYIVHEAKGPGGQPSTRYVPEDMRTYRQGHPKYFDDIVKKMAHTDPDLADALERAKLQKRLDYVEVRALVDQTEHTHKNLGYAYKPFNGYDYQSPLTPASGEE
>NZ_CP024894.1|WP_009083178.1|7152309_7152615_+|hypothetical-protein
MAPRGYEIGGDLEAHARQLDALADGLKQAVDAAHQVSMPTDAYGILCQPFRMMLDPVENYGIEALQNTVTAMDAQAQKVRDAAKAYDSYEGEAAGSMKASD
>NZ_CP024894.1|WP_009083175.1|7151715_7152279_+|YbaB/EbfC-family-nucleoid-associated-protein
MPDSVDASEQMIEGWTKQLQQTAARYQAMAERMQGQTVTERSKDGSVEVTVDAKGLLKNLVLADSAAGKKMADVSAEVLRLVQRAQARIPELLQQAAAETVGGDETTETLVADAQRTFPAPPAEEPAESGPDRVRRFLPEDAEETGAPAPPPARPAGPPAPPPPQQQQRRRRSSSDEDDDFGGSILS
>NZ_CP024894.1|WP_009083190.1|7166172_7167543_-|cystathionine-beta-synthase
MEYAEHIVDLVGNTPLVKLNSLTRGLKPLVLAKVEYVNPGGSVKDRIALRMIEAAEASGELRPGGTIVEPTSGNTGVGLAMVAQRKGYQCVFVCPDKVSEDKRNVLRAYGARVVVCPTAVAPEHPDSYYNVSDRLVREIEGAWKPNQYANPENPASHYHSTGPELWRQTDGKITHFVAGVGTGGTISGTGKFLKEVSDGRVQVVGADPEGSVYSGGTGRPYLVEGVGEDFWPETYDRNVADQIIPISDAHSFEITRRLATEEGLLVGGSCGMAVAAALKLAEGLTEDDVVVVLLPDGGRGYLTKVFNDAWMSSYGFLPPDSSGATVGDVLTRKSGALPSLVHSHPNETVAEAVAILSEFGVSQMPVVSAEPPVMAAEVVGAVNERDLLDALFTGKAQLADRLETHMSPPLPTIGAGEQVSAAMKALEGADGALVLIDGKPAGVVTRHDLLAFLAGR
>NZ_CP024894.1|WP_037718364.1|7167576_7168461_-|pentapeptide-repeat-containing-protein
MLSTRTIAWWGTGIVLLAAVAAALLLWLLGGGTPADSSRLDALRTASSIVVGTGGAAALLLAARRQRSAELDLEQKDHDATERRITDMYGKAADQLGSDKAPVRLAGLYALERLAQSHADQRQTIVNVLCAYLRMPLDGTAEEVQVRKAAQRILMLHLRPGGGEEPNGSYWPDIDLDFSGAHLVELTLTYCRIRSIVCHETTFTGKSTFCCTEFRTKADFTDAVFTERADFRGAVIGGERDAFRGAQFEQHAEFADDAKVRLAGALAKPGYRRAWPAGWAEEPGDDGWLRLVPR
>NZ_CP024894.1|WP_009083192.1|7168599_7169820_+|acetyl-CoA-C-acetyltransferase
MPEAVIVSTARSPIGRAGKGSLVGMRPDDLAVQMVRAALDKVPELDPADIDDLMLGCGLPGGESGFNMGRAVAVELGYDHLPGCTITRYCSSSLQTTRMALHAIKAGEGDVFISAGVETVSRFAKGSSDSWPDTHNPLFADAEARTQATAESGADSWQDPRENGQLPDVYIAMGQTAENLARLKGITREEMDEFGVRSQNLAEKAIADGFWAKDITPVTLPDGTVVSKDDGPRAGVTLEGVSGLKPVFRPDGRITAGNCCPLNDGAAAVVIMSDTKARELGLTPLARVVSTGVTGLSPEIMGYGPVEASKQALSRAGLSISDIDLVEINEAFAAQVIPSYRDLGIDLDRLNVNGGAIAVGHPFGMTGARITSTLINSLQHHDKQFGLETMCVGGGQGMAMVLERLS
>NZ_CP024894.1|WP_037715602.1|7169882_7171415_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MSAPANPAAPDAGDKLDRGVLKVASVVVLGAIMAILDTTVVNVALQKLTIQFATSFDTIQWVATGYMLALATVIPVTGWASDRFGTKRLYLLAIGTFLVGSMLAGLAWNVESLIAFRVVQGLGGGMLMPAGMTILTRAAGPQRIGRVMAVLGVPMLLGPICGPILGGWLVDSVSWRWIFYINVPIGLIAFVLALRLLPKDEPEPGNRFDFLGMLMVSPGLAALIFGVSRIPSTGTVASLEVWLPALAGLVLLVAFVLRARTMEHPLIDLKLFRNRSFSVAMITMAVFCVGFFGAMLLLPTYFVLVRGETALNAGLLLAPQGFGAMLAMPITGRLADKIAPRRIVVPGLVLIALGMVVFTQVSATTPYWQLLTALFVMGIGMGCTMMPITSAALQTLRSKDMAKASTATNILQQTAGAIGSAVMSIILAALLAGKFGVPTSQGQLVATAATMNPATHDAAAGLAGESFATTFLWGTILLAVCLVPALFLPKKRVVPTATESDETAPPVLMH
>NZ_CP024894.1|WP_037715605.1|7171596_7172871_-|YeeE/YedE-family-protein
MATTDSPVDERKLLDFPTSCEAPAPKPEEPVKVVPLAVAAVLAVGLTAYVWAAHGAKFGVLLVLGLLLGLALFHSRFGFTSAWRQLIAVGNGQGLRAHTLLLGTAATLIALICGTGAGLFGSKPLPVANVGPIGLALFVGATLFAIGMQLGGACASGTLFAVGAGQSTIVLTLGGFIAGSVLYTWGYPLFTGWPQVSGFLLSDHVGWFGSWAITIAVLAAIVLATRVVQKRRVPPPVDTVPTARGFARIFRGSWPILVGAVVLGVLAGAVYLVSGGIWGVTSAFSLWGAKILQVFGLHPEQWEFWRLKANAASLSKPIWQDKTSLTDIGIMIGAFVAAAAAGAWKIHSSIPWRTAVAAVLGGILMGIGARLANGCNIGAYLGGISVGSLHGWLWGAFALFGTWIGLKLRPLFGLGNPVRTDSIC
>NZ_CP024894.1|WP_100266954.1|7173025_7173643_-|hypothetical-protein
MSVPPHGHGPRPGYGQPGPSPYQQHYGPGGMPPQQSPKRGFPTRIVVLVAVAVVVVAAGVAIGFFAFGNSTSNTHANDCMHIEKSGSTTSTRTVDCADPGANVKVAVSRASRSGTCPRGDYYRYLTGGKNRRVLCLIPNVQQGDCLAGLQTATTTYQKVACTDPQKNAEIVKLVPGAKDRSVCEGSGSTTARWYSDPEEAICIKS
>NZ_CP024894.1|WP_009083196.1|7173791_7174652_-|Bax-inhibitor-1/YccA-family-protein
MRSSSNPAFRNLPRGAAATGQYGPNVGFDQPYGQPQGQGGVPGYGPGQTGTASADRPMTVDDVVIKTGMSLGVALVVGVLTAIWAQSQLVRDSLGRLAPSGPLLGALIGGLVVGLVVSLVIIFKHKPSGPLTLVYSGAEGLFLGALSGLFEVFLPGIALQALIGTAGVFVAMLVVYKTGAVKVTPKLTKWIVGAVAGAAILMLVNLITAVFFGFNPLRDGGPIAIVFSLVVIGIAAFSFLLDFDQADQMIRAGMPSKWAWYAAFGLMTTLVWLYLEILRLLSYLRD
>NZ_CP024894.1|WP_009083197.1|7174973_7176461_+|hypothetical-protein
MGWISRPRARWRAATGLVATALLGALSVTTPGIASAAADPVKGAGLPIVHNEGGTNYEDWLGSYKVGGKDVFCVRFHLKAPGSDEAYQPGDELLTKWGEPLEPDIAGNISYLLLRYGNTSNNDEAAALAHLLHSWTAKTHTPGDTNFGTPPEKAAYPEQKYFDALSAAAKNDVAKMKAEAEANRGPWTASVTAPKGDQHLGQPATWTVTVKNSQGKGIPDVPVKLTATDGTVGQADKQADAEKASDSSSGNSAPQAAAKDATLKTDASGTVTVKVTPTGDQPKLVASLSAPADKPKVQNPVNTKDGIQSVVGTGGEQQLTAQGVVAVAKPGKVQVTKTDAKTGKGIGGATLRVTGKDRKTAATGQDGKPLTGPDGQPAVVTTSGDNGTATVENLLAPQEVCVVEVNAPPGYTNAFDPNNPPAACGSLTPGGTLALTVANTPNEVPHAIPAGDLPVTMAKGTVETSFSTGGIAGLAALALVGSALVGFAARRSARR
>NZ_CP024894.1|WP_037715607.1|7176479_7177196_+|class-F-sortase
MSGKGRLVGGFVLGAASVLAVELATVVISSPPTTVVAGSASPATAAVPAASPQQLAPAAPPSSSSAAPPPSSSAAAPPPAAPAEHRQAPEPGPQAPGTIRLPGGGTAAMVRQDLGPGNTLPVPSDIGQAAWWGADLEAVSGASVFAGHVNWRGATGPFSELWNERIGGVVTIVDRAGKTSRYRISQLVTVHKNDLPGRADDLFGQAGPHRVVLVTCGGRWIGGSDGYEENRVVIADPE
>NZ_CP024894.1|WP_037718367.1|7177413_7179405_+|SDR-family-oxidoreductase
MATFLVTGATGLIGRQVTRQLLTRPDVERVALVVRASSREKLAALVDGWPHPDRVTLVPGDLGEPLMGVSEADREALRGVDHVIHLAALYDLTADDETSIRANVEGTQNVLDLAANLNAGCLHHVSSVAVAGDHEGLFTEDMFDVGQRLITPYHRTKFEAEKLVREQHEVPWRVYRPAVVVGDSQTGEMDKIDGPYYLFPAISRLAGLPDLPSAGPDLGDTNVVPVDYVAKALLELVTTPGLDGRAFHLVNPEPQPVVSVYNAFARAAGAPTITVQLGDKVSKGIVGLVKLSEHIPGFTIARDAVLERLGIPPVLLETMAFPSVFASAETRKALAGSGVEVPQLEEYAPTLWRYWREHLDPFRARKHGPRGELDGRRVIITGASSGIGRATALKVAAAGGVPLLVARRQHELEEVRDEIIAAGGTASVYPADLTDEDSVRKAVDAMLAEHGRIDMLVNNAGRSIRRSIKLSYDRMHDYERAMAINYFGAVRLILAVLPHMSERKFGHIVNVSSIGVQGIAPRFSAYAASKAALDYFSRIAATETHGDGITFTTIHMPLVRTPMIRPTKIYDAFPTKSPEQAADMVLKALVRRPKHIGTPAGQAIGLTYTLAPGLTDAIAYQGFRIFPDSAAAGGSGKLKIGRGEKHLSRAAMALARLSRGFHW

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Crispr_ID: NZ_CP024894_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_11

8061927-8062012

Orphan

Consensus_repeat	Method
CCCACCCAAAGCGAGCACCACGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_11

>merge|NZ_CP024894|11|8061927-8062012|CRISPRCasFinder
CCCACCCAAAGCGAGCACCACGACAGGGGCCCGGGGGCGAAGCCCTCCGGTGGCCGAACCCGCCCACCCAAGGCGAGCACCACGAC

>NZ_CP024894|11|10|8061927-8062012|CRISPRCasFinder
CCCACCCAAAGCGAGCACCACGAC	AGGGGCCCGGGGGCGAAGCCCTCCGGTGGCCGAACCCG
CCCACCCAAGGCGAGCACCACGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_037716085.1\|8050401_8053152_+\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|274858
NZ_CP024894.1\|WP_037716091.1\|8062256_8062697_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP024894.1\|WP_037716096.1\|8065409_8066312_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP024894.1\|WP_009084675.1\|8072986_8074819_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|277344
NZ_CP024894.1\|WP_009084670.1\|8067492_8068827_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_CP024894.1\|WP_078561024.1\|8061071_8061866_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|272862
NZ_CP024894.1\|WP_037716087.1\|8060212_8060506_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009084674.1\|8070541_8071039_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP024894.1\|WP_009084653.1\|8058960_8059887_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181947
NZ_CP024894.1\|WP_100267180.1\|8066316_8067282_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236196
NZ_CP024894.1\|WP_100267179.1\|8057626_8058292_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP024894.1\|WP_009084651.1\|8058393_8058960_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_CP024894.1\|WP_009084646.1\|8056229_8057246_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|214858
NZ_CP024894.1\|WP_037716099.1\|8068823_8070350_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP024894.1\|WP_037354362.1\|8062720_8063203_-\|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl\|CDD\|274869
NZ_CP024894.1\|WP_009084656.1\|8060505_8061075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009084642.1\|8053148_8053520_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009084665.1\|8064546_8065260_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP024894.1\|WP_037716094.1\|8063279_8064509_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP024894.1\|WP_107487939.1\|8053602_8056122_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225249

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_037716085.1\|8050401_8053152_+\|cell-division-protein-FtsK	gnl\|CDD\|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	1.86722e-20
NZ_CP024894.1\|WP_037716091.1\|8062256_8062697_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.34397e-53
NZ_CP024894.1\|WP_009084675.1\|8072986_8074819_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|277344	cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.96172e-77
NZ_CP024894.1\|WP_009084670.1\|8067492_8068827_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.98674e-154
NZ_CP024894.1\|WP_078561024.1\|8061071_8061866_-\|SAM-dependent-methyltransferase	gnl\|CDD\|272862	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c., methyltransferase, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. [Unknown function, Enzymes of unknown specificity].	1.95395e-76
NZ_CP024894.1\|WP_009084674.1\|8070541_8071039_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	9.28762e-26
NZ_CP024894.1\|WP_009084653.1\|8058960_8059887_-\|hypothetical-protein	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	6.53704e-99
NZ_CP024894.1\|WP_100267180.1\|8066316_8067282_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236196	PRK08241, PRK08241, RNA polymerase subunit sigma-70.	2.4999e-112
NZ_CP024894.1\|WP_100267179.1\|8057626_8058292_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55897e-15
NZ_CP024894.1\|WP_009084651.1\|8058393_8058960_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	2.67861e-21
NZ_CP024894.1\|WP_009084646.1\|8056229_8057246_+\|CapA-family-protein	gnl\|CDD\|214858	smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	1.57858e-82
NZ_CP024894.1\|WP_037716099.1\|8068823_8070350_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.56255e-28
NZ_CP024894.1\|WP_037354362.1\|8062720_8063203_-\|tRNA-adenosine-deaminase-associated-protein	gnl\|CDD\|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	5.26783e-52
NZ_CP024894.1\|WP_037716096.1\|8065409_8066312_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.8921e-64
NZ_CP024894.1\|WP_009084665.1\|8064546_8065260_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.3849e-21
NZ_CP024894.1\|WP_037716094.1\|8063279_8064509_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	5.64749e-145
NZ_CP024894.1\|WP_107487939.1\|8053602_8056122_-\|hypothetical-protein	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	3.84146e-74

>NZ_CP024894.1|WP_078561024.1|8061071_8061866_-|SAM-dependent-methyltransferase
MSGELPAVGKTAVGVAGLRALESGRPDRLFEDPYAGAFFHAGRAIFEGRENHRELGMVFAQQVAIRTRFFDDFVAGGTQTVLLAAGLDARAFRLDWPDGARVFEVDLPDVLAFKETVLAEQGARARCERTVVPVDLRDDWVTALRDKGFDPGKPTVWLAEGLLVYLSRDEAERLLTAVTEVSAPGSRISFEHRPDGDRDGLLERARKYGGEVTALWRGGLAGDAPEWLAEHGWRPETVTVAELSVRYGREPLEHTRGGFVLATR
>NZ_CP024894.1|WP_009084656.1|8060505_8061075_+|hypothetical-protein
MPFLHPALDNAAAGLASLSAAAAAIGAPDPVAALRQIDCSPQTIRESARTLSSGRDVLVMARLEFERGAHSAERKWGGEPAARFRGCADELDAHYRQAAEAAARTASVGLDLADLLDRLADQTAARVMLIAEGVSPAAVALLAGDRSAEPAVREACATIAEAVERGVATIGEATTFLDAFGTPVLQEEN
>NZ_CP024894.1|WP_037716087.1|8060212_8060506_+|hypothetical-protein
MAGSMSERLNAAADALDRAAADADRAAGRFAEARLESTPWGISAPAREIAARWEAALAARDVDARILGDATSDLAGQLRMAARGHHHRPTIATALLS
>NZ_CP024894.1|WP_009084653.1|8058960_8059887_-|hypothetical-protein
MSVDLPARLRSSVTPDDGILEGPRVLRRLPDGGEERPYELFALRPLGRVIGAEISGVDLGAPVSPRLRAELNRALLEWKVLFFRDQHITSQQQRAFAANWGELETNPFIPRGDSDEVVRFTRTAGMPGYENIWHTDVTWRPNPALGSVLRLVEVPPIGGDTMWADMAAAYDNLPADVRERIDGLTAVHDFVPGFDRFTDPDLLAQWQDAYPPVEHPVVRTHPETGRRTLFVNQAFTTHIVGLDRGESDRLLRYLFLQAHTPEFQVRFRWEPDSVAFWDNRATQHYAVNDYHPHVRIAERVAIVGDRPY
>NZ_CP024894.1|WP_009084651.1|8058393_8058960_+|TetR/AcrR-family-transcriptional-regulator
MDRTASRPRKADAIFSATLALLAERGYDALTVEAVAARAGVHKTTIYRTWATKDEVLADALVQAPELTFEIPDTGSLRGDLLELARQIHRLLTDPANRRVITAVVSALPDRAATAEAAGRFFADRLGREQAVFDRAHDRGELADPADAEMIMDLLGGNLWFHTLIRANSADDVYLERLVDTVLTGVPR
>NZ_CP024894.1|WP_100267179.1|8057626_8058292_-|alpha/beta-hydrolase
MLPVVFVHGIRLSGACWQQQKRLARGRIATPDLPGHGTRRGERFTLDGAVDAVADAIDEVGGRAVLVGHSLGGYVSIATAARHPERVVSLVGAGCSLVPSPILRGGFRFASRGLAAAADDGAWLLRRVLPAEVAEPTIAAGIASEVIPDVLAAGMDPLADLARYPGRVLLLNGRHDHFRLGERRFLAACQDGALQIVPGAGHYLPLTHGEICARAAALVSG
>NZ_CP024894.1|WP_009084646.1|8056229_8057246_+|CapA-family-protein
MITLVLGGDVNLQGRANPETAFQPLSSLLTGADVRFVNLEGPLSGSTGTDIPHKPNWRHSPPEMVAALTAAEIDVVSVANNVTYPPAAAMASLAVLDRAGIAHCGAGANLAEAHAPAILERPGGRIAFLAYTSLCWPVGQEATEDSPGVAVAGAYTSYQPDPRVLDVPGRPPIVHTTPVRRDLELLLADIRRARAEADHVVVSMHWGLPGEELAEYQVTYAHAIVDAGADLVVGHGPHTVQPVEVYRGRPILYSLGNLVFDWPAMRDRHRDGLLAGCVVGEQMRVELVPIRRDEDNECVPLTGADADEALRRFVELSARRGTTVTVSDGFATVEGLRG
>NZ_CP024894.1|WP_107487939.1|8053602_8056122_-|hypothetical-protein
MQRGLRVTISRRPAGGRSAGGTRLTRGAVAVSAAALALGGLAVPAAAAPSADALIAEVYGGGGNSGATLTNDFIELANHGGAPVALDGYSVQYLPGSASASSKWQVTPLTGSVAPKGRYLVAEGKGNGGTVALPTPDATGGIAMSATAGTVALVSDSAPLTCKTAADCLADSRVKDLVGFGDAVVREGNPAAAPSNTTSVARAATLADTDDNSADFTVGDPTPTNTKGETTGTQPGEPGVPAKIHDIQGTTRISPFKDKQVEDVTGIVTAVRSFGSARGFWITDPHPDSDPRTSEGLFVFTGSTTPAVAVGDAITARGKVKEYYPDAPATSNYQSLTELTSAQWTVDSAGNPLPAPTVLTPDQVPDVLAPNAGGNIESLPLEPSKYALDFWEAHESEIVQISDARVVGPSNKYGELYVTTKPQQNPTPRGGTVYLGYDKINTGVLKVQSIIPAAQQAAPKVNTGDVLTGVTSGPVEYSNYGGYTLLASKLGAAKDNKLQRETTRKQRPGELSVATYNVENLAPSDSDTKYAQLAHGIVDNLATPDIVTLEEIQDNSGATDDGTVDADATLKKFTDTIVAAGGPQYQWRQINPVNDEDGGQPGGNIRVGFLFNPARVSFVDRPGGSPTSSVGVVSDHGKAHLTQSPGRVDPGNEAWEDSRKPLAGEFVFRGRTVFVLANHFNSKGGDQPTHGRYQPPTRSSEVQRQKQATVLQGFVAQLLGADPRANVVVAGDLNDYQFSPALAKLTSGGLLKDLISTLPPAERYSYVYEGQSQVLDHILASGAPRGVDYDVVHVNAEFADQASDHDPQVVRFRPSAGNPFADFANDVLDQLDRLLHRTA
>NZ_CP024894.1|WP_009084642.1|8053148_8053520_+|hypothetical-protein
MTEGTTSPAMRYKEIVGLARGSADNLRAWELARADEIERQLADAHAAVAAAREREEKAHERASRWWKMALHNVSRLSFVEALDDPQPVTTARPQYLDRYLEEVKPSYQELVQAVLGLGWRAKR
>NZ_CP024894.1|WP_037716085.1|8050401_8053152_+|cell-division-protein-FtsK
MASKAAEQRNRVQTALDRVRHQIGLVLGAAAGAREMAEAEVARLTLEQEIVRVGMDHADPAQQTEWARHPAAHEVFAALGGTRAAFYTDWSAGPGELRDLVAAHAPGPAGRPPSEWLGRVGTNPGVTAPGLWRVGSATAAGRDISRTFDVAVPLLDESHLAITSAPKTRPVVDGIVQGLLMRVLSAFEPGAVKIHLWDVGQLTAILPDLYPLSRTSALSLYDPTRLEDLLDELAGHIRRIHATGMQAGHTSLRELRKATGQRLEPYRIAVLYGNGETLDAERARDLKRVASGALAAGICLILVDVPTAVSASIETLSLLDERRAVSSMTGSDLVVDLDPPMPSGQVIRAANRIAEALISKQGGPRSFADLMPAEIGQESSARELRAPIGFHEGEAVEVVIGDASPHALIGGPSGSGKTNFLYALLGSLAARYSPDELALYLLDFKEGVSFAGLAPGRKDSSWLPHAKLVGVNVNTDREFGLALLRFLADELRRRSAAAKEHEVTNLADLREQDPGGHWPRIVAVIDEFQYLFAGRDQVTAQATQLLEDIARRGRSQGIHLVLASQDVAGIEAFWGKPAVFEQCTLRIAMPKARRVLAETNNAAVSAPKWHAVINHDSGVAHGNQLAHVPDASTRNVFVNLQQKLWELYAGRFTRPRLFDGAHSPVLEQFPAFMELKPSPQPRAILGQSIDVTEAACGVELPRVPGRNVAVLGGATAEALSIMDSAARSLSKQLKEGEVEFLLHCPIEASSSAVVDLKDRLVAEGHLATLTDNLSADLETIVDSLDTTTPRILLLYGVDAALPSLEAKAVGQLKSGLDHLRTLLKNGPSHGVHTIGWWRSVARLKDTLGFGGTDDIGTWAALDVQGNELSPFAAGQVVHWSPRPGRALFFDRTTHGAPEVIIPFQRPETEPTAGGTP
>NZ_CP024894.1|WP_037716091.1|8062256_8062697_-|nucleoside-deaminase
MRAALDAARAPGADVPIGAVVFDPDGRPLAAARNARVELADPTAHAEILALRAAAREFGDGWRLEGCTLAVTLEPCTMCAGALVLARVARLVFGAWEPKTGAVSSLWDVVRDRRLNHRPEVHGGVLESDCAALLEAYFADRRLGAE
>NZ_CP024894.1|WP_037354362.1|8062720_8063203_-|tRNA-adenosine-deaminase-associated-protein
MAVQEPVTGFAIAVVREDGRWRCSALDSSALTELDAAITELGKLRSTGAAFGLLAVDDEFFVIVRPSPRGPSLLLSDAAAALDYDIAADVLDVLRVDPPDEDDDAVWPEGDLEILADLGLPGGELEVIVGEVDLYPDEQLQMIAQRCGFEAEFSKLLDQL
>NZ_CP024894.1|WP_037716094.1|8063279_8064509_+|amidohydrolase
MTGPTDLPTLPGNRHPGLLDAARQLQDRTVELRRAVHRHPEQGLQLPRTQAAIRAALADLPIELTDGRSTTSLTGVLRGARPGPAILLRADMDALPLTEDTGLEFSSEIDGTMHACGHDTHVAMLASAARLLSERVDELAGSVVFMFQPGEEGLHGARHMIHEGVLDAAGTRVTRAFGLHTIANSPSGVLQVRGGPMMASADTFSVEVTGRGGHGSAPHDAIDPVPAAAAMVGALQTMVTRRISVFDPAVVSVTRIVAGTTTNIIPETAVLEGTIRTLSETTRSFVREELPKVCEAVGAAHGCRVSAGVDPGYPTTVNDPQVAAEVLSLGAEVLGPDHVEELTTPIMGAEDFSYVLQRVPGTFAFIGAREPGADPATTEDNHSNRVKFHEPAMAAGVAMYTAFALDALR
>NZ_CP024894.1|WP_009084665.1|8064546_8065260_-|class-I-SAM-dependent-methyltransferase
MPDALFAHPRLAPIYDTFDGDRVDLPAYLRIADELAARRVLDVGCGTGCLAVLLAETGRTVIGVDPAEASLDIARAKDRRVDWRHGDATTLPPLDADLAVMTGNVAQVFLTDDDWAATLRGIRTALRPGGYLVFETRRPDYRAWETWDVPPHTREVPGIGAVEQRVEVTEVRLPLVSFRTTYRFLADGTVIASDSTLRFRSQDEVETSLRAEGYRVLDVRQAPDRPDREFVFLAQAE
>NZ_CP024894.1|WP_037716096.1|8065409_8066312_+|dihydrodipicolinate-synthase-family-protein
MAFEKQRQRLAGVVAIPVTPFTAAGDVDAETYERLVERLVLSGVEVVTPNGNTGEFYALEEQETRQCLELTTKAAREASVLAGVGHDVRTAVKAAKHARASGADMVMIHQPVHPYVSRAGWIDYHRAIANEVPELGVVLYVRNPAIEGADLAQLADAAPNVLGVKYAVPDPVRFRTVARDAGYERFVWIAGLAELSAPGYFAVGATGFTSGLVNVAPQISLDLFRRLRNHDFAGAMEIWDRIRPFEEMRAAHSNANNVSVVKDALSQLGLCRPDVRPPSRLLTAAERDQLFGILSAWGLS
>NZ_CP024894.1|WP_100267180.1|8066316_8067282_-|sigma-70-family-RNA-polymerase-sigma-factor
MTDFASETEPYRHELRVHCYRMLGSFDEAEDLVQETLLRAWRSRSTYAGRASLRAWLYRIATNACLDHLEAHPRELPTLDLPVAHDSDLAPRPDVAVPWLQPAPDSALQPDAVVVALETVELAFLAAIQHLSPRQRAALVLRDVLGWSAREAASVLGTTPASVNSNVLRARAELQEHLPTRRTEWASASASDEERAVVAKYVKALVEHDEAAFAELLREDVRCSHAPGAGGHMGPEPTWYAGRAAVLEAWAPALQGGNAVEFRVVETRANGLPALATYARTVGEFRPFGLVTLRLDGSRVAEVTTFGPEVFPAFDLPPALA
>NZ_CP024894.1|WP_009084670.1|8067492_8068827_+|diaminopimelate-decarboxylase
MTLSELLPSLGCEAADHLEPGLWPQGTKLGEGGELLFAGAPVSHLAARFGTPAYLLDEEQVRETARAYRRALPEADVAFASKALCTRAVLRWVAEEGLSLDTCSAGEIAVARAVGFPAERILLHGNAKTPEDLKAALQYGVGRIVLDSLDEVEQLGALAHGAQRVLIRVTPGVSGDTHAAITTGTEGQKFGFSLRADVRDNVDRAVAAVLSQPSLQLTGLHCHIGSQVSRVDRYEEAARRMVEVLVRIRDQYGITLRELDLGGGHAVPYADREASFDLDGYARRLRVALGYECSSRDFPLPRLTIEPGRAIVGPAGITVYRVCAVKRGARTFVAVDGGMSDNPRPALYGARYTARLVGRRTKAARTPMTVVGRHCESGDVLADVCLPDDIHVGDLLAVPCTGAYHHSLASNYNLVGRPPLVGVRDGHATLLVRRETEEDLLRRC
>NZ_CP024894.1|WP_037716099.1|8068823_8070350_-|APC-family-permease
MTEAVAAPVVPAKGLRSNALGMVSSTVIGMSSTAPAYSIAATLGFIVLAGTGFKAAAFVLLSFVPVLFVAFAFRELNAAEPDCGTNFTWATRAFGSRVGWMTGWVVLVEQLLVMSSQSALTGRYTLLLFGLDDLAGNRAVTTAIGGAWLLALCWLCYRGIEVSARAQWILLGIELAVLVIFSVVALTRVYRGTAGPQASLPRWDWLWPSGVSVGTAVSAVLLAVFIYWGWESSLSVNEESADPRHAPGRAAILSTVLLVLNYLLVTVAALAFAGVGEHGIGLANEANAEDVLAGLGGAVFGTSGFGKVMGVLLIVSVLTSGAATSQATIMPAARTTLSMASHGALPKVFARVHPKYQTPSVTTWAFGLVSLALYVLLALWSRNVLADSVDAVGLTIAIEFTMTALACVWVFRRTLLSSVRNFLLRGLLPFVGGVFFLAVLVLAAIAYAKPDAGETTVFGIGGVAVIGVVAILVGFPLMFAVQRACRDFFAGRRLTRGAVARDGQTIES
>NZ_CP024894.1|WP_009084674.1|8070541_8071039_+|Lrp/AsnC-family-transcriptional-regulator
MGDENRTKIEEPRAPRALDGTDRTLITLLQEDGRASFTALAKAVGLSEGAVRQRVQRLLREEMVQIVAVTSPEHVDLTRRAMVGITVDGDAREVAQQLAKVADVHQVALCSGRFDLLAELLCRDDDHLLSVLGDEVRPIAGVVSTELFVYLKLAKQDYSWGRLTA
>NZ_CP024894.1|WP_009084675.1|8072986_8074819_-|twin-arginine-translocation-signal-domain-containing-protein
MTDSSRRNFLRGAGILGAGAAVSALPGLNGIAAADPGVARRPDGDSPRFTIAVMPDTQYLFDEDRGDSTPVDASLSYLLRHAQDDNVVFLAHLGDLTQNGQAREFAGISRSFQVLDRFRFPYSTLAGNHDIDGSTDDQRGRTPYLDAFGPQRQRNSPTFRGSSKDGYNTYHVFRAAGREWLVLAMDWRPSAGGFAWAKQVLAQHPKMPAILTIHELVNSDEQGKAFLSDFGQKVWDEFVNESDQIFLTLNGHYWPPSRLVKRNAAGHDVHLHLTNYQDRYYGGSGMIRLYQFDVARGVIDVRTFSPWLDGKRDLTELERIEAERSTDVDYFSLDIDFDQRFASFAPVPVPPARPVKPQLVPGTVAYWRFEGGRAGAPVPDDAVIKDLSGRGNDLRRATVPGSGPGALTYSADFSPRQPSRASLRFDGARNPGRGAYLQTVDSAPMNNLTFQRGYTVEAFIRLPEDFRDGTHGWCGIFARLGNGGAAGKSGDDPNESAATFSVSDGAELQWAVFPLNQNGISTNWGHELPLAKWWHVAVVNDGWRSTLYVDGCPLLRNPKTPAIGLANPGGSWLVGASSYRGKVERSFYGEIGEARVVDRALAPREFLLGG

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Crispr_ID: NZ_CP024894_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024894_12

8601362-8601444

Orphan

Consensus_repeat	Method
CTGCACGACCTGGGTGCGCTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024894_12

>merge|NZ_CP024894|12|8601362-8601444|CRISPRCasFinder
CTGCACGACCTGGGTGCGCTCGGGACCGGCGTCCGCGGGCGGCTGCTGGGTCTGCCACGACTGCACGACCTGGGTGCGCTCGG

>NZ_CP024894|12|11|8601362-8601444|CRISPRCasFinder
CTGCACGACCTGGGTGCGCTCGG	GACCGGCGTCCGCGGGCGGCTGCTGGGTCTGCCACGA
CTGCACGACCTGGGTGCGCTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024894.1\|WP_009085706.1\|8593910_8595476_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP024894.1\|WP_037718944.1\|8587635_8588019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_100266996.1\|8592034_8593156_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP024894.1\|WP_037718946.1\|8591073_8591919_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP024894.1\|WP_009085726.1\|8608504_8609365_+\|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NZ_CP024894.1\|WP_009085709.1\|8596842_8600517_-\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NZ_CP024894.1\|WP_009085703.1\|8593152_8593830_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP024894.1\|WP_009085697.1\|8589527_8590970_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP024894.1\|WP_100266997.1\|8604840_8605350_+\|DUF2716-domain-containing-protein	unknown	unknown	gnl\|CDD\|371291
NZ_CP024894.1\|WP_037718953.1\|8610168_8611473_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP024894.1\|WP_037718951.1\|8606264_8607956_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP024894.1\|WP_009085729.1\|8611491_8612337_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132934
NZ_CP024894.1\|WP_158688136.1\|8601825_8603289_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP024894.1\|WP_009085693.1\|8588071_8588965_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319910
NZ_CP024894.1\|WP_009085707.1\|8595669_8596821_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275016
NZ_CP024894.1\|WP_009085725.1\|8608025_8608466_+\|DUF983-domain-containing-protein	unknown	unknown	gnl\|CDD\|368773
NZ_CP024894.1\|WP_009085721.1\|8605376_8605778_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379731
NZ_CP024894.1\|WP_009085715.1\|8603431_8603923_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009085717.1\|8603998_8604619_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024894.1\|WP_009085696.1\|8588957_8589482_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357

Protein	Function_ID	Function_description	E-value
NZ_CP024894.1\|WP_009085706.1\|8593910_8595476_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.30631e-28
NZ_CP024894.1\|WP_100266996.1\|8592034_8593156_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	8.48622e-47
NZ_CP024894.1\|WP_037718946.1\|8591073_8591919_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	7.41079e-40
NZ_CP024894.1\|WP_009085726.1\|8608504_8609365_+\|Fpg/Nei-family-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	1.85273e-56
NZ_CP024894.1\|WP_009085709.1\|8596842_8600517_-\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	3.47204e-24
NZ_CP024894.1\|WP_009085703.1\|8593152_8593830_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.50004e-67
NZ_CP024894.1\|WP_009085697.1\|8589527_8590970_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	6.33662e-45
NZ_CP024894.1\|WP_100266997.1\|8604840_8605350_+\|DUF2716-domain-containing-protein	gnl\|CDD\|371291	pfam10898, DUF2716, Protein of unknown function (DUF2716). This bacterial family of proteins has no known function.	2.65103e-49
NZ_CP024894.1\|WP_037718953.1\|8610168_8611473_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.72856e-77
NZ_CP024894.1\|WP_037718951.1\|8606264_8607956_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.93299e-20
NZ_CP024894.1\|WP_158688136.1\|8601825_8603289_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.21736e-10
NZ_CP024894.1\|WP_009085693.1\|8588071_8588965_-\|glyoxalase	gnl\|CDD\|319910	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.06854e-31
NZ_CP024894.1\|WP_009085707.1\|8595669_8596821_+\|hypothetical-protein	gnl\|CDD\|275016	TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase A system-associated. Members of this protein family occur, one to three members per genome, in the same species of Euryarchaeota as contain the predicted protein-sorting enzyme archaeosortase (TIGR04125) and its cognate protein-sorting signal PGF-CTERM (TIGR04126).	0.00953521
NZ_CP024894.1\|WP_009085725.1\|8608025_8608466_+\|DUF983-domain-containing-protein	gnl\|CDD\|368773	pfam06170, DUF983, Protein of unknown function (DUF983). This family consists of several bacterial proteins of unknown function.	0.00496569
NZ_CP024894.1\|WP_009085721.1\|8605376_8605778_+\|hypothetical-protein	gnl\|CDD\|379731	pfam15585, Imm7, Immunity protein 7. A predicted immunity protein with an alpha+beta fold and a conserved GxaG motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Tox-REase-3 domain.	1.8995e-60
NZ_CP024894.1\|WP_009085729.1\|8611491_8612337_+\|S49-family-peptidase	gnl\|CDD\|132934	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain.	5.43655e-76
NZ_CP024894.1\|WP_009085696.1\|8588957_8589482_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	7.18061e-22

>NZ_CP024894.1|WP_009085709.1|8596842_8600517_-|FkbM-family-methyltransferase
MPEPGTAACTIVARNYVPAARVLARSYLEHHPGGRFVIAVIDAPRDQSERAGDGLTVVGPAAFGIDEDDYLRMATAYSVTELATSVKPYLLRELLKESEAAIYLDPDIELFAPIPEVAELAKEHDIVLAPHFLTPLPQDGLEPDDAVIMGTGMFNLGFIGVGRGAGPFLDFWAGRLRHDAIVAPEQQLFTDQRWVDQVPSLFRHHVVTDPGFDVAYWNLHERPIGRDEDGALTAGGAKLRFFHFSGYRPEKPWLLSFHCARKPRVLLSHNDDLRAICDSYGTKLREAGYAESLDSIPYGFKDFQDGTPVPKLARRVFREGWIKAERKKKPAPPHAYGEDGGLALREWLATPEDQGQAAAGLNRLTHAIWASRIDLQMAFPHPYGDDADAFRHWCAGSGVSEAGLPEWALPAQPVATRPPHDEFGVNLLGYLTAELGLGEMGRIVLEAIETGGVPVATVLEEKAVSNRTGIERPATVGDPRFPVSVFAVNADQTRTILTNHPEVGAGRYRIGLWAWELEDFPQWQHEAFGMLDEVWTVSDFCRCAFAEHSPIPVKTIPVPVRDPGEPSPPAREKGEPVRFLFAFDFNSVAERKNPWGAVEAFQRAFPGREDVRLTVKAINAKLHPQAAERLRAVVRGDDRIELIERYLSVAELHELYETSTAYVSLHRSEGFGLTVAEAMARAMPVISTDYSSTTEFLDASTGWPIPYRLVPVGEGNYPYHADAVWADPDLDAAAAAMVQIADDPAEATARGKRAREVVLRERSMSAAAEWMRHELEQAHQKWQERERTAAPPPEHPLSPLQQATEALRWRPEADAPSRLPLAPALRKAVLRAIDHYDVHQRHVMGALLAATEDSNRRLLDRIENLERSIDESRRAALSTRTLGERLETLRGTVNELRRQAPETALALRNLEADVAKLAEGYDGVGAEVEAAAGTVHKMFARRDERLDADEKAIQRVTLDVSAMRDAARLRHAPVPRGADVVQCDVGALLMPVDEVMLPWILFHRSWEDSEAELMASLADGAFLDIGAHVGYHTLRLLRATPDVTRVIAVEADPVNASYLRRNVEVNLPPAAGELVTVVESAAWDEPGTVHLAQATPGNSGDNRVTTDGSGVEVPAVRLDSVPEVTEQRISLVKVDLQGRDHRALAGLAEVLRRDRPHVVCEFDPGAIAELGDDPAAVLAGYRSLGYTPKVVTDDGPADQVLEDSAIIAAAKADEKEFVTLWLAP
>NZ_CP024894.1|WP_009085707.1|8595669_8596821_+|hypothetical-protein
MQQPSLDGAVERPSTLRAAFRQAAPAISLYLVFQLVAFGVLWLMSWKADVSPGRFIADFDANWFVSVAQHGYDQPIAIGVDGLPVENNLVFFPLYPGTVALLTLVGIPPLAAGMTISLLAGCAAAWGLFVLGRDLAGPRVGLLVAVLWSIGPGSTALHLAYSEALLMALVAWTFVLLARREWLAAGGLAVLAGLTRASSGALIAAVGIAALVAVFQRRDGWRPWVGGLLAPLGLLGYLGYVWIQTGRPDGWFWLQTAWRMRFDFGVFTFLQVRDGLTSDEASWITVTALVVLAAVVLQFWTWATRLPLPWQIYGTLTVVIALCSSNFFQSRPRFLLPAFVLTVPVALLLAKLPNRVLAVLLSVIALGSAWYGAFLLTIAHVAP
>NZ_CP024894.1|WP_009085706.1|8593910_8595476_-|acyltransferase
MSTLAEPNSAALAEASSAPPEKTRIVFIDIGRGLGALLVFYSHIAHPWVIAKNDKAPYVDFIEALTSGPMHMSKQGIGQIAVPFFFLVSGFVVTPIALRQGTGRFALNRFIRVYAPMLFVVLLTAFLLLVNLHPPSTGQPQTLNPLTVLTNTALVNYLIFPQVVLVPVAWTMIVEVIFYLLLMAVLPLLRRWVWLAIAVELTFIFVVMMSRSQFGPSWSLFAVNVSYLPAMLIGQVIWATTKKQIPLWTGALYGGCAWSLYVLADVINVGRVDSSYNLALAFAVACFLMGMFAEDRLKQRKIWTMLSERSYSIYLLHMLVTFVLLQLLRPAVPLPIALLIVIPAVFGVVEFSYRFVERPSHSLARRLSHRPKPPPPAPETPAPPVEPPVETPGETTQLVADSEITLEIPRIPAEPAPPRRPAPRPRPVPNGRVPRNGAPPPTDPPRGMAPRANGGAHRARPVTESAVDRTAEPPVRRAMPPRRRPSAPPELRYQPDQENQAQRGDQDDLPRHRDSFRHTPR
>NZ_CP024894.1|WP_009085703.1|8593152_8593830_+|response-regulator-transcription-factor
MTIRVVLADDQALVRAGFRLLLDTEDGFEVAGEASDGEQAVAQAVEHRPDIVVMDIRMPGTDGLEATRRITSHPALGGVKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLHALRVVAAGEALLAPTVTRRLIAEIVGRPEHRRIDTSAVREVTEREREVLALVAGGLSNDEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESGLVTPRRGSHE
>NZ_CP024894.1|WP_100266996.1|8592034_8593156_+|sensor-histidine-kinase
MHYWWRAQNPWFGRVFRTFVVLAFVLGGSSASGRWQHAPHPLSPLGAAWLAATVLTLLLVHRYPLPLFVLTAASAYAYYLSTEPGGPVIIVPTIALFVLTRRHGPVVAGSTGGAVLVAAYLVHVLVEQTFAVGAWALFAVVWMAAVIGIATAVRFQFAAVAARREQADEHRHRMAEQERLRIAREVHDVVAHSLAMINVQAGVAAHVADRRPEEAKEALLNIKAASASALNDLRATLAVLRSGENRAPAPSLAQVDELLDHARAAGLAVELHGEPGELPAPVDGAAYRILQESLTNVVRHADGAQRVEVRFERKPGTLVLTVRDDGRGTAQPTPGHGLRGMRERATALGGSVEASVTGQGFQVRAELPVEGEK
>NZ_CP024894.1|WP_037718946.1|8591073_8591919_+|helix-turn-helix-domain-containing-protein
MTSGIEDRLRRTELGEFLRNRRGRITPEQVGLPIGGRRRTPGLRREEVAQLAGVGVTWYTWLEQGRDINASEQVLSAISRTLRLDPHEHVHLFTLAGAPEPVTEKKNCSAITPSMHDMMVQLEPFPVAVRNARFDVLGHNAGYDWLMGGVDKIPYEERNTLVQCLLNPEWKERMVDWEQNVPRMVSSFRAAMAEHMGEPGWKSLVKRLMAESPCFADLWSQHDVNTEQAKSKRYLHPEAGLLTFDFTYLYAGRRSEIRMSVYTPANDETLEKLREFVPKTR
>NZ_CP024894.1|WP_009085697.1|8589527_8590970_-|MFS-transporter
MTTTTTAPATATAAVGTPERTGLSSAGLITVLLGAALPIIDFFIVNVALPTIDADLRASTATLELVVAGYGIAYAVLLVLGGRLGDTFGRRRLFLLGLTLFTLTSLACGVAPDAATLVIARVAQGAASAMLLPQVLSIIQAGTTGERRSRAIGLYGATGGIATVVGQLLGGALVAANVWDLSWRPIFLVNVPIGIFGLLLARRAVPDSRASNPLGVDRWGTVLLAVSLLSLLIPIMEGRALGWPWWSIALLVVFPFAAYGFARVERKLEAAGGTPLLPPALLRTASVRHGLTVAVPFFCTFGSFMFVYAVTLQNGLHLGPLGAGLALTPMAVAYFTTSLVSSHLVARFGRKVVPIGGVVLAVGLIALAGTALADWPDLSIWQLAPAMVLIGVGNGLAMSTLFRVVLSRVPADLAGVGGGVLTTTQQTSLALGVAVLGSLFASLSGPGALGYQGAFVLVIGILAALALLVSGLARKLPDPR
>NZ_CP024894.1|WP_009085696.1|8588957_8589482_-|sigma-70-family-RNA-polymerase-sigma-factor
MTEPRVQPDPAFALLGLYEKALPEVYGYLLARCGDRVLAEELTSETFLGAVAACRKDHAPPVSTPWLIGVARHKLADHWRRAEREQRGLRLVHDAEDDVEDPWDEQLDALRARQVLESLSVSHRAVLTLRYVDGLPVRDVAAHLGRTIHATEALLTRAKTAFRRSYREKEGRDA
>NZ_CP024894.1|WP_009085693.1|8588071_8588965_-|glyoxalase
MPEPFDALALPPTPADPDPAFAEQLRDDLRRLILNGAEMTTTETTPQQVETGALTPYLVVTDARAALDFYVEVFGARRRSEPIVMDDGRVGHAELDIGGSVLMLAEEFPEMGNVVAPEGGAMVRVEVPDPRGAARRAVELGAELLRPVEDRGYGLSGSIKDPYGQRWLVAQAAPRAKAPAERTYQHGEAGYFTFQVPDDGRAKAFYGAVLGWQFSQGSLPTAWRIEGHGLPGGLWGGSELQTGWKLMFAVDDLEAALGRVRDQGGRAGEVENQPYGRTADCADDQGIEFWLWEQPRT
>NZ_CP024894.1|WP_037718944.1|8587635_8588019_-|hypothetical-protein
MAAHWTPRDEAELTAGWQLWLALGSCAWPGPDWDGTPAEAVRGLERCFAACDEILAAHDQPDSAVAGLVRSMLLAANWTLGLWRDDADPLDSERAALLHADLAAFSDHAESVRTLLAAGGGWASLPL
>NZ_CP024894.1|WP_158688136.1|8601825_8603289_-|hypothetical-protein
MSWQEELRRLDAELAAGRLGHAEHRRQRDELLAEASGGGAASPVASPLRQDSGSPTWSAPAPQATPGAESQQAPSAAAESSTPEAGTPQNIATMTGHGPFDGPMIARRVAPDGTALPSTPPGGAPAPEQPAAPFFSPPPSPAAPPSQATPPAPHQPQPQLPAQPGTWPGVAPVQWHPPGQQPNQQQPSQPVVGWASTNPAMPAPEPPAVEAFLNSAAAPAAEKTQPAFSHTPGTPFSTDRPTTAPSPADDRPTAVFGAIPANGAQPEPRRLWEDDAKPRRSRPTWLFLSLAVLVVLALVVGGIWFIGAKNDSNDTAAPPPAAASAPNTQPASLEDKLPTLPGTPNPENSTMALDKAVQAKAVSDADANLMRAAGADQLVYHSYGSPEGGTTLIAVPTPSKAQAGQLVQGLRQNLVTGGFDSSPFGPAATDLLYTGSSPAGRVLAFWYTSGGVSVGIGVSGPVGQDPAALRSRMEQIRAKVAAALPAS
>NZ_CP024894.1|WP_009085715.1|8603431_8603923_+|hypothetical-protein
MSSARGALAALAVDRLAGLDITAAELVEAGARAVGEGLEAPSLPELAALDHRNHQAVSDAFSHVVEELGIELPVDATAAQWQLMGEHLGEMVRGDVRLAEAAQSVKALDGRLGRPAALSELRQWLAMLATWIPTDVTPVSYCEQQVLQQARAVLAGPWPPVTR
>NZ_CP024894.1|WP_009085717.1|8603998_8604619_+|hypothetical-protein
MSSSQPAYVTLPTFVGYSASKGPSRSSFVRRQRRLYEDPARAAFNYYRRAANAVRAGRAARQDEVAMRALVNNADERTRPHYAAIAEGWLRYLGRRDPKLVEVGRAKFSLGELEIGISPQLGLRKSNGRRFATWLYFKEEPLTRDAAQLALWLLTEGMPELLPGGEALVVDVRRAKEFTLSARDRERLRPWAFSEASAFVTLWRAA
>NZ_CP024894.1|WP_100266997.1|8604840_8605350_+|DUF2716-domain-containing-protein
MADEPAWYWVHDKLRFWPSTFAHDWPGFHEPSPSAAWDLSTGEYDRASAEFRLGPYAVEEHDVARAVLAALKETTAEDEWLWVLHWQHQSFKFWPHRMQENAPWPVSVFPRGDYHLFLAEDFSYGTLGHPWERTLCVFGEKLLPAVEKHADGILTNQLRRDGQPSALTR
>NZ_CP024894.1|WP_009085721.1|8605376_8605778_+|hypothetical-protein
MFEYHGWVTIAASATGDDDAALLERMVERVHRSLQNATLLDLVDLRWSGGLPMLHLGGLDKHGGAITPQLLETFARVGELAPGSYGLLHVWDDQHPEHDNAFQVYRMARGQVTEEKDPHLSPVAPTVLDTYEL
>NZ_CP024894.1|WP_037718951.1|8606264_8607956_+|RNA-polymerase-sigma-factor
MTELGTAPPPAASESDEQALLKRLRDGEDAAFGELFELHAAAVRRLAQSLAADRSEAEDITAETFFRVLQALRRGAGPRDYVRAYLLTVARRVSWEWHGARRDVPVTDDELTFRAGAGVDTPARTAEHTLITTAFTSLPERWRTVLWQTEVEGEQPAMVAPHFGLSANATAALARRARQGLRAAYLQAHLSVNRGPETCRAVVEKLGGFTAGSVTGAEAERIKAHLLGCPSCRATQDELRDVCSSLRAHAGVLVLAVPALAGAGKAAGAVATVKSVVFGSKVKVGLALASTAAAGAVSLTAGPLVFGSHPVQDVGLGGGAPELALQPPEQPPPPAQQGPRVIAGKLYGSARPEHVAVHQGASPHLGAAEVPNLPAAHQPVSGDQSSSTSGAAGSTGATGATGSAGSTPRDDLPGQDASHSGSPMTGRSSTTESRSDLDTSTNSSSPGLLSTTTDDTTPSSYAPPRSAYVPSPDSYVPPSVTTTPAGSRHVAPAAPQSSNSADSSDCPKSSRSAESSKQRESAKPGKRARTDSTSGQDVTGSADSSADASSRTAKTRQTTSNSQ
>NZ_CP024894.1|WP_009085725.1|8608025_8608466_+|DUF983-domain-containing-protein
MNRLVRGEDGRHWVVRAQMEWRAPATADDFEHDVAGSYGPGIAMIVVMGFLVIALVVWTPDVVKVPAWVLLALLLVVLFFPLRWILRRPWTVVAETEGDVAGDRPSERWVGTIRGMFTVSGEVKRISKTIQRHSLPDFDGPLHPVE
>NZ_CP024894.1|WP_009085726.1|8608504_8609365_+|Fpg/Nei-family-DNA-glycosylase
MPELPEVEALAHHLREHAVGSTVFRLDVASLSVLKTAMPPYTELHGREITGATRHGKHLDVVLGDLHLVVHLARAGWLRWSDALSPAPLKPGKGPISLRVHLESASGPGFDLTEAGTKKGLAVWIVADPAEVASVARLGPDALAVDASQLRELFQGKGTRLKWALTDQSLIAGIGNAYSDEIMHRAKLSPYATVGKLDEGALEVLAEAIREVETDAVSRSVGQKAARLKGEKRSGLRVHARTGLPCPVCGDTIREISFADKSFQYCATCQTGGKPLADRRMSRLLK
>NZ_CP024894.1|WP_037718953.1|8610168_8611473_+|sensor-histidine-kinase
MDVVSDFPYALVVPWVLVGILVIVVLVLAFRARRPKGVIQDAVLQAVHRMSKATPNLRAGLDEEAANRMTAELLEVLDCLAVGITDSEGTLLSWAGEATDHYLDVVDDIGTALRKHRRAVADHNKMPCNHRGTCKMKTAAIVPILVEGEAEATLIVVGRTRGKLVQMAEAVGQFVCTQFELARLEESRNQLQQAEIKALRAQISPHFVYNALNTISALIRTDPEEARELLQDFADFTRYSFRTSGMYTTLAEELRNIDRYLTIENARFGGRLEVRMKIAPEVLSVVVPFLIIQPLVENAVKHGLASKPSGGCVTVIARDDGHEALITVEDDGIGMDPRQLTDLRNAHRTGAHVGLGNINQRMRQVFGEDYALTVETAPGAGMKVALRVPKFKLGVRPNMPDYSADVPPQPPAPLEPEPEPDGVHGSRSGMLPAH
>NZ_CP024894.1|WP_009085729.1|8611491_8612337_+|S49-family-peptidase
MSVTDKLTSRLPVLGDRGDRKDVVAVVKLHGVITPTPSPLARGAINLGAVESALTRAFAHDRLKAVALQINSPGGAPTQSGLVAERIRQLADEKGVPVLAFAEDVAASGGYWLACAADEIYAHRTSMVGSIGVISGGFGFTGLLERFGIERRLHTAGANKSRLDPFSPEKPEDVEWLKNMHGQLHELFVEWVKERRGDRLTDSADLFTGDVWLGQKAVDLGLVDGLGSLREIVRERYPDAEISVAEPKKPLLARLGLGAPAAASALLDAVTTKAAWSRFGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024894_1	1.2\|1079646\|17\|NZ_CP024894\|PILER-CR	1079646-1079662	17	NZ_CP024894.1	1079705-1079721	0	1.0

1. spacer 1.2|1079646|17|NZ_CP024894|PILER-CR matches to position: 1079705-1079721, mismatch: 0, identity: 1.0

caccgtccatcaactcg	CRISPR spacer
caccgtccatcaactcg	Protospacer
*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1204008-1204035	3	0.893
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_004683	Mycobacterium phage Che9c, complete genome	13803-13830	3	0.893
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	AY129333	Mycobacterium virus Che9c, complete genome	13803-13830	3	0.893
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	609064-609091	3	0.893
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013255	Kocuria flava strain HO-9041 plasmid 1, complete sequence	75123-75150	4	0.857
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_014214	Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence	84868-84895	4	0.857
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	MN694370	Marine virus AFVG_250M325, complete genome	33527-33554	4	0.857
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	MN694518	Marine virus AFVG_250M326, complete genome	9791-9818	4	0.857
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	268842-268869	4	0.857
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	342154-342181	4	0.857
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	27179-27206	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013917	Sphingomonas sp. LK11 plasmid unnamed2, complete sequence	71024-71051	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	246308-246335	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP017243	Rhizobium etli 8C-3 plasmid pRsp8C3b, complete sequence	30170-30197	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	1115363-1115390	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	1079499-1079526	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	968029-968056	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	1115070-1115097	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	1102909-1102936	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	988352-988379	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1058019-1058046	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	994265-994292	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	1079499-1079526	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	988351-988378	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	1102909-1102936	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	1011372-1011399	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	282778-282805	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP018759	Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence	42157-42184	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	536149-536176	5	0.821
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	508073-508100	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	251787-251814	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	252277-252304	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	530474-530501	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	1072849-1072876	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_010311	Streptomyces sp. HK1 plasmid pSHK1, complete sequence	39138-39165	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	630044-630071	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1676245-1676272	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2553200-2553227	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	50407-50434	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	451490-451517	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1357611-1357638	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP026489	Streptomyces sp. 604F plasmid unnamed, complete sequence	58135-58162	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	163891-163918	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	135703-135730	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	166490-166517	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP029339	Streptomyces sp. SM17 plasmid pSM17A, complete sequence	130771-130798	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP029836	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed6, complete sequence	15733-15760	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	175616-175643	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP047651	Xylophilus sp. KACC 21265 plasmid unnamed1, complete sequence	5296-5323	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	815625-815652	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	272269-272296	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP026518	Deinococcus sp. NW-56 plasmid unnamed2, complete sequence	107652-107679	6	0.786
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_014214	Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence	30736-30763	7	0.75
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	52657-52684	7	0.75
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	CP021131	Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence	265227-265254	7	0.75
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NZ_CP032328	Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence	19164-19191	8	0.714
NZ_CP024894_12	12.1\|8601385\|37\|NZ_CP024894\|CRISPRCasFinder	8601385-8601421	37	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	359237-359273	8	0.784
NZ_CP024894_10	10.1\|7165632\|28\|NZ_CP024894\|CRISPRCasFinder	7165632-7165659	28	NC_018583	Gordonia sp. KTR9 plasmid pGKT3, complete sequence	7705-7732	12	0.571

1. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 3, identity: 0.893

cggctgctggcccggctgcccgggctga	CRISPR spacer
cagctgctggcccggctgcgcgagctga	Protospacer
*.***************** **.*****

2. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_004683 (Mycobacterium phage Che9c, complete genome) position: , mismatch: 3, identity: 0.893

cggctgctggcccggctgcccgggctga	CRISPR spacer
ctgctgctggcccggctgactgggctga	Protospacer
* **************** *.*******

3. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to AY129333 (Mycobacterium virus Che9c, complete genome) position: , mismatch: 3, identity: 0.893

cggctgctggcccggctgcccgggctga	CRISPR spacer
ctgctgctggcccggctgactgggctga	Protospacer
* **************** *.*******

4. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 3, identity: 0.893

cggctgctggcccggctgcccgggctga	CRISPR spacer
cagctgctggcccggctgcgcgagctga	Protospacer
*.***************** **.*****

5. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013255 (Kocuria flava strain HO-9041 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.857

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggccggactgcccgggctgg	Protospacer
 *********** *.************.

6. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_014214 (Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence) position: , mismatch: 4, identity: 0.857

cggctgctggcccggctgcccgggctga	CRISPR spacer
aggttgctggcccggctgcccaggctgt	Protospacer
 **.*****************.*****

7. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to MN694370 (Marine virus AFVG_250M325, complete genome) position: , mismatch: 4, identity: 0.857

cggctgctggcccggctgcccgggctga	CRISPR spacer
ctgctgctgccccggctgccccggctgc	Protospacer
* ******* *********** *****

8. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to MN694518 (Marine virus AFVG_250M326, complete genome) position: , mismatch: 4, identity: 0.857

cggctgctggcccggctgcccgggctga	CRISPR spacer
ctgctgctgccccggctgccccggctgc	Protospacer
* ******* *********** *****

9. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 4, identity: 0.857

--cggctgctggcccggctgcccgggctga	CRISPR spacer
gccgg--gctggccgggctggccgggctga	Protospacer
  ***  ******* ***** *********

10. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.857

cggctgctggcccggctgcccgggctga-	CRISPR spacer
cggctgatggcccggctgcgc-ggcggac	Protospacer
****** ************ * *** **

11. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
gccctgctggccgggctgcccgagctga	Protospacer
   ********* *********.*****

12. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013917 (Sphingomonas sp. LK11 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggcccggctcgccgggcttg	Protospacer
 ****************  ******* .

13. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgccgacccggctgcccgggtggc	Protospacer
*******.*.**************. *

14. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP017243 (Rhizobium etli 8C-3 plasmid pRsp8C3b, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgccgacccggctgcccgggtggc	Protospacer
*******.*.**************. *

15. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

16. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgcggc	Protospacer
****** **************  ** *

17. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

18. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgcggc	Protospacer
****** **************  ** *

19. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgcggc	Protospacer
****** **************  ** *

20. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

21. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

22. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgcggc	Protospacer
****** **************  ** *

23. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgcggc	Protospacer
****** **************  ** *

24. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

25. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgcggc	Protospacer
****** **************  ** *

26. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

27. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cgggtgatggcccggctgcccggcgtgg	Protospacer
*** ** ****************  **.

28. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP018759 (Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
caggagctggcgcggctgctcgggctga	Protospacer
*.*  ****** *******.********

29. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 5, identity: 0.821

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgatggcccggctgcccttgccgc	Protospacer
****** **************  **.*

30. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gccctgctggaccggctgcccgggctcg	Protospacer
   ******* *************** .

31. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggcccggctgaccgagcccg	Protospacer
 ***************** ***.**. .

32. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
accctgctcgcccggctgcccgggatgc	Protospacer
   ***** *************** **

33. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gacctgctggcccggctggccggactgc	Protospacer
 . *************** ****.***

34. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gagatgctggcccggctgcacggcctgc	Protospacer
 .* *************** *** ***

35. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_010311 (Streptomyces sp. HK1 plasmid pSHK1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
cagctgctgccccggctgccggggcgcg	Protospacer
*.******* ********** ****  .

36. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggccgggctggccgggatcg	Protospacer
 *********** ***** ***** * .

37. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
ttggtgctgacccggctggccgggctgg	Protospacer
. * *****.******** ********.

38. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgctggccctgctggccggtcacg	Protospacer
************* **** **** *  .

39. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggcgcggctggccggggcgg	Protospacer
 ********** ****** ***** .*.

40. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggccgggctggccgggatcg	Protospacer
 *********** ***** ***** * .

41. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgctcgcctggctgcccggcgata	Protospacer
******** ***.**********    *

42. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP026489 (Streptomyces sp. 604F plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
cagctgctgccccggctgccggggcgcg	Protospacer
*.******* ********** ****  .

43. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggcgcggctggccggggcgg	Protospacer
 ********** ****** ***** .*.

44. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
ttggtgctgacccggctggccgggctgg	Protospacer
. * *****.******** ********.

45. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggcccggctgaccgaggggc	Protospacer
 ***************** ***.*  *

46. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP029339 (Streptomyces sp. SM17 plasmid pSM17A, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
cagctgctgccccggctgccggggcgcg	Protospacer
*.******* ********** ****  .

47. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP029836 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gagctgctggcccgactggccgggcggg	Protospacer
 .************.*** ****** *.

48. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgcgggcccggctgcccgaggtcg	Protospacer
 ****** **************.* * .

49. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP047651 (Xylophilus sp. KACC 21265 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gcgacgctggcccggctgcccgcgctca	Protospacer
  * .***************** *** *

50. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
cggctgctcgcctggctgcccggcgata	Protospacer
******** ***.**********    *

51. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gggctgctggcgcggctggccggggcgg	Protospacer
 ********** ****** ***** .*.

52. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP026518 (Deinococcus sp. NW-56 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

cggctgctggcccggctgcccgggctga	CRISPR spacer
gaggtgctggcccggctgccggagctgc	Protospacer
 .* **************** *.****

53. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_014214 (Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence) position: , mismatch: 7, identity: 0.75

cggctgctggcccggctgcccgggctga	CRISPR spacer
gagctgctggccccgctgccccggcccg	Protospacer
 .*********** ******* ***. .

54. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 7, identity: 0.75

cggctgctggcccggctgcccgggctga	CRISPR spacer
gtgctgctggcccggctggccggcgcgc	Protospacer
  **************** ****  .*

55. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to CP021131 (Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence) position: , mismatch: 7, identity: 0.75

cggctgctggcccggctgcccgggctga	CRISPR spacer
gcgctgctggcgcggctgcccgagccct	Protospacer
  ********* **********.**.

56. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 8, identity: 0.714

cggctgctggcccggctgcccgggctga	CRISPR spacer
aagctgctggccgggctgcccggctacg	Protospacer
 .********** ********** .  .

57. spacer 12.1|8601385|37|NZ_CP024894|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 8, identity: 0.784

gaccggcgtccgcgggcggctgctgggtctgccacga----	CRISPR spacer
gggcggcgcccgcgggcgggtgctgggtctg----gatgcg	Protospacer
*. *****.********** ***********    **

58. spacer 10.1|7165632|28|NZ_CP024894|CRISPRCasFinder matches to NC_018583 (Gordonia sp. KTR9 plasmid pGKT3, complete sequence) position: , mismatch: 12, identity: 0.571

cggctgctggcccggctgcccgggctga-----	CRISPR spacer
-----tcagcccgggctgcccggccagcccgac	Protospacer
      * * ** ********** * *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3330704 : 3338592

Tupanvirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009077337.1\|3330704_3331649_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	1.2e-58	39.1
WP_009077342.1\|3331906_3333541_+	carbamoyltransferase	A0A1B1IVF2	uncultured_Mediterranean_phage	1.2e-53	32.4
WP_009077343.1\|3333561_3334122_+	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	3.1e-09	30.4
WP_009077345.1\|3334118_3335492_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	A0A0F7LBI5	uncultured_marine_virus	3.0e-13	37.4
WP_037713794.1\|3335509_3336196_+	SDR family oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	3.0e-06	29.2
WP_009077349.1\|3336224_3337163_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_009077350.1\|3337155_3338592_+	UDP-glucose/GDP-mannose dehydrogenase family protein	E3SLH6	Synechococcus_phage	2.7e-25	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP024895

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024895_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024895_1

136731-136891

Orphan

Consensus_repeat	Method
TTCCCCCTCTTATGTCGGGATAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024895_1

>merge|NZ_CP024895|1|136731-136891|CRISPRCasFinder
GTCCCCCTCTTATGTGTGGAGCATCGTGATCGCGGGCCGGTTGTTCACACTTCAAGGCCGCGTTCCCCCTCTTATGTCGGGATAAGACCGAACGAAGCGCCCGACGTCGGCGACTTGGCGACGGGTCCGGGCGCAAATTCCCCCTCTTATGTCGGGACAAG

>NZ_CP024895|1|1|136731-136891|CRISPRCasFinder
GTCCCCCTCTTATGTGTGGAGCAT	CGTGATCGCGGGCCGGTTGTTCACACTTCAAGGCCGCG
TTCCCCCTCTTATGTCGGGATAAG	ACCGAACGAAGCGCCCGACGTCGGCGACTTGGCGACGGGTCCGGGCGCAAA
TTCCCCCTCTTATGTCGGGACAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024895.1\|WP_158688146.1\|125447_127736_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214866
NZ_CP024895.1\|WP_009086104.1\|140971_142051_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086095.1\|147545_148313_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185628
NZ_CP024895.1\|WP_009086123.1\|124359_124905_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	unknown
NZ_CP024895.1\|WP_100267203.1\|146532_147489_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP024895.1\|WP_009086127.1\|122493_123684_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086106.1\|138517_140536_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_100267220.1\|135677_136409_-\|TnsA-like-heteromeric-transposase-endonuclease-subunit	unknown	unknown	gnl\|CDD\|380186
NZ_CP024895.1\|WP_158688147.1\|121253_121706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086090.1\|149846_150506_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_078561297.1\|144568_146425_+\|S8/S53-family-peptidase	unknown	unknown	gnl\|CDD\|173788
NZ_CP024895.1\|WP_158688145.1\|131350_131800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086093.1\|148544_148820_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_037719388.1\|121864_122449_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239477
NZ_CP024895.1\|WP_158688144.1\|143760_144171_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086103.1\|142580_143270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086124.1\|123676_124363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_100267202.1\|137249_138227_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_CP024895.1\|WP_009086116.1\|132281_132782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024895.1\|WP_009086119.1\|130055_130967_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113

Protein	Function_ID	Function_description	E-value
NZ_CP024895.1\|WP_158688146.1\|125447_127736_-\|hypothetical-protein	gnl\|CDD\|214866	smart00862, Trans_reg_C, Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.	0.00578177
NZ_CP024895.1\|WP_037719388.1\|121864_122449_-\|hypothetical-protein	gnl\|CDD\|239477	cd03382, PAP2_dolichyldiphosphatase, PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.	9.80726e-06
NZ_CP024895.1\|WP_078561297.1\|144568_146425_+\|S8/S53-family-peptidase	gnl\|CDD\|173788	cd04056, Peptidases_S53, Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase.	8.47049e-59
NZ_CP024895.1\|WP_100267202.1\|137249_138227_+\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	4.57832e-23
NZ_CP024895.1\|WP_100267203.1\|146532_147489_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	4.14631e-20
NZ_CP024895.1\|WP_100267220.1\|135677_136409_-\|TnsA-like-heteromeric-transposase-endonuclease-subunit	gnl\|CDD\|380186	NF033179, TnsA_like_Actin, TnsA-like heteromeric transposase endonuclease subunit. The transposase of transposon Tn7 contains multiple subunit. Members of this family are largely restricted to the Actinobacteria, resemble the endonuclease subunit TsnA of the multimeric transposase of Tn7 and its relatives, and occur in genomic neighborhoods that suggest a similar role in transposition.	2.69464e-117
NZ_CP024895.1\|WP_009086095.1\|147545_148313_+\|hypothetical-protein	gnl\|CDD\|185628	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.	0.000403646
NZ_CP024895.1\|WP_009086119.1\|130055_130967_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.93002e-17

>NZ_CP024895.1|WP_100267220.1|135677_136409_-|TnsA-like-heteromeric-transposase-endonuclease-subunit
MVADERFEVAFADDEGEQRLALTKAWSVPFESCLPVRDFPSYKGQRHYNGRWWTATTGTLVGYESWVERDTLVMLDFDADVVGIASQPFWLFWTTAQGKPRSHAPDYFARMADGSAKVLDVRPADRIKPRDQAAFDETRAACSLMGWAYDVVGSPPGTLLANVRWLAGYRHPRYDLPEIAPALRAAFGKPLGLMDGAQAVGDPISVLPVLFHLLWCQQLHTDLTRELTPDAVVTTAATRQVSA
>NZ_CP024895.1|WP_009086116.1|132281_132782_-|hypothetical-protein
MASEEPLLDVETYSLLLLSWETTYDFSGWIARAVALAAQELGGFEVLLSTWVTDDASLEFDVGWQRDFIYQLLFPADQPKRIAPSTQLGGDLALCGLRHPDWVDMVVREQADAELTSNLARIFVRAFWEVLDWPDWFVGILATVAVKIGVDEFNPPGVGSTWSPTR
>NZ_CP024895.1|WP_158688145.1|131350_131800_+|hypothetical-protein
MIESYRAAHTFTGTEWVPASVSLEKDVKRRLERRRSRDYKKYRLKIAETHYINAAFKSRPKSLDQLIDLTREYLEGRGLHPYVGRGTTTRVEPAVEADMEDLEVDLRDHAGFGMFGKVQSALVARLLDALDQSDITDGALDLDALSART
>NZ_CP024895.1|WP_009086119.1|130055_130967_+|ParA-family-protein
MTQLDPPEDGPRGVATTALSGKGGPGKSFLTHHLASEASSQGKSVLMMDADPEANLTARFVENNPGLKDAPGLADVLIAAGILNGDDQFDYEAGAEKLREVIQSIDWPGVKFIPAGKQLLAISQVTLNGQNWQWLIREIFEEAGLYDEFDLLALDTAGRRAALVTMVMYACDVAFSPIGNTADSVLKAKQAKDRVLAIQGVHPLKWVGVVVTGLDMRAAANVDIRAQAFEEFGLLDNEGNIVGQGEVVLEIPYRPATVHEAYNNGKRLEEYKGQGAQDMSKLFRDFLKEHIFGSRSQVREVEA
>NZ_CP024895.1|WP_158688146.1|125447_127736_-|hypothetical-protein
MTGQSPPGTPLRLTEAEFRILSLLATAPGRLGERARIVLAAAAIGSGNATTESIKNLNRTEARWRSRFERHRVAGLLTPAPCAADMLLREQTILQAVTSPGAEPATATALAERLGEVLSQSTISQVWRKAGFTPPPPGILIADPWFAGRARTLVGLLAIGGAPADAPGDSDPAGDRVIPSGLMLAVFAASVRDPTNRSKESELRRTAMLSGRQQTFDECLAVARIAARLGERKRCVLDEQAAVDAIGFLSRLRDEVPSDLVLHVAASVPPGPVLEVWAQQHPAVELRYTPTAAAWTALFARSTAATVSVLEARRLPSPIPDASARLRAQYVAPEPFTCGSWSRTDEVAEVIASLSRRWPRPPRAAPRVPTWQTALRELRERRSTDFPADLPAYEFLMALRRRHDVEPLVKSDFLAALVVWEDLSKTRDRLEAELIAFNLDLATNATQSETAPALGVTAPSAVGMRRRRLASGSAGRRRGRRRATPDPREQIVLDGRGRRRDLVADTVEELQARWVDDLADREDLIERIPSRDDTYGMLAYIVDPRRPIARHVDPELPTPTERRQADGRAGLLLANDVYHRIKSERAAWFDLAREHGLTWTEIGAALGKTRSGAFKERVALAREFSGHGKVGASDRVSDVPPYWKDYVDDLRQHIAGFAGHADYFANDESIRDWLDLLDFTSATPGRRQFTFFLELVEELVSASQCEGCDRPLQPIATDDSGRRLCIRCHERGEPDLAELASAATVLRRTLIAKRRASASAPP
>NZ_CP024895.1|WP_009086123.1|124359_124905_-|helix-turn-helix-transcriptional-regulator
MKVIHESTWMSQTEAQLNIYVRWGKGSVMEEPGKGSTIADRLQYLVNVRSESRGGPWSDVEIAEGIEKQGLGSISAQTVRRLRIGETDDPKIGTLASLAKFFGVETSYFTDDDPAASMNELRYLLALRDGTMRHHLMRAGELSDDNQDIVGGLIANLLAVERKHNRQAAGDTDGGKGTSAG
>NZ_CP024895.1|WP_009086124.1|123676_124363_-|hypothetical-protein
MTETGGPGPHGDRQRSPGGPIGRFRELRELRRSIGRVLDEIGVPKPWDLEEFAARLASYRGRPMELLPLPLPVKAPDAVWLPGPTVDLIIYDASAADLLREHIILHELGHMILCHRGSADQPFNPNLLRTVGMERVEGEDPSVPLFRLTHPDVLRALRMDGAGDDDLVQVSLYRAGYSDPQERDAELAAHIIWHRAGMRLVPEGPRELDGEAADAVDRMDDVMGRVRG
>NZ_CP024895.1|WP_009086127.1|122493_123684_-|hypothetical-protein
MVDSIGTVFHLFIVVVGVCVVVYKLVDLIRSPGRPAMWALWSAFLTLTLAIISGLRWVPVSPASAEVIWIVQHWLIFIAFAGLELFFFLSVIPQQRRAWRAFAPHGAVLLAAAAAMTVGFVAALATEQPDFLHLERYFGLWLTSMLLAYTAGFAAAMLAISRLASRWSRITDRPWMRRGLRLLAIGCWISLVYSAHKIAYSLLVVAGSPPPWSQLQVEVVLSALGVTFALVGLVLPALGPRLSAARSWFRHAGAYRRLEPLWREFADPDRGVTPEVVLANPAPWWATTFALHRRVIEIWDGRKRIRDYLDPAVERAMFETGVQRGLADTELAAFVEAECLREALRLKRAGRPPPDAGGIPPPRTGNNLAASVTFLEQVAAALAQPAPPAAQDPVTP
>NZ_CP024895.1|WP_037719388.1|121864_122449_-|hypothetical-protein
MQRAARVITEILAPWAVILLLSLAMAAKATGFRLWPTLLWGAVVAVFSAGVPMAFITRGAKAGQYDSHHVNNREGRGPVLLVCFGSTAIGLTILLVGSAPPAMVIMTWAMLAVLVVTGTITVAAKWKISMHAAVSAGGVAMLAFLYGPWALLLLLLVALVSWSRVVLRDHTPGQVAAGGVAGFVVCGALFLWLL
>NZ_CP024895.1|WP_158688147.1|121253_121706_+|hypothetical-protein
MEGQGEQESRFRMLLPQGRQAQHLAMGFPGPLPGETADDDQDQALVLRPDPPWFFTRRVAPNWVHGQNPWAGVDRDGGPPPGEPAAGNDEDQALVIRPEPDAAPAAGHANAPAAHDPGTRSSARSRMPPPGTPGSRHSRLNHARDAPRTW
>NZ_CP024895.1|WP_100267202.1|137249_138227_+|hypothetical-protein
MPAAKGRPKNASVERATQIAEFRQSGGGKSLVFQAAPLTLASLPYRQPKAGTDVWVRRNGDFWLTLRPGVSMKPNGEHGSYGWPFGVIPRALLMWVTAEALRTQDPKIELGSSLSDFVVKLLGQRATSGPNGTRTRVKEQANRLFNADISYQWMGNGDRIQAGVNLKIARAWRLDLGDGEMGQESLFPSYVQLSGDFFEEIIKSPVPLDLEAVRLLGSAAAMDLYAFITYKAFVLNKTGKYFLLTWDGMGDQFGYQFPKTSKGRYKLKEKVLPAWESVRRVYPEANVTVTNDGLLLGPGPTAVQPRKSRGRLGSGATAWTGLPAN
>NZ_CP024895.1|WP_009086106.1|138517_140536_-|hypothetical-protein
MTASPAEPAGRHPRPARTPRIDAAAHWRLAAAITPRAGLRTDTWDDAASTWLHQYDHQPWPDAPPPGPHALYLADDSGQFRLLCFDLDAARGDVAADLVRLADLLDTVGARYAVAASGPGGGRHVWLSLGPDGAAALAVRRLAKLLARELPTLDHGMLCNPRTGAARAPGSPHRGGGHSLLLQPADPDTATAVLTAANPGVVERLTEQLLATTTTPDERAAPSPAARQVVDRGGAPALAGLRREPSPSTRAALDTVPRDGEANALLASVLVGLALARWSWPEVHALLDHAPGLEHARSRANPRSGAPRIPRGDAAARNLLLRQWRRSVDYAARIPAAAADDANRGEETASLVAAVQSAADDDPARWARPSGPADRGVLDALCLVALNACSVEVDLDIRRTAAMAGISKSAAARAFDRLSKDGFLLRTIDAYGPRAATWKLLPPATAPEQQQQGGTQGPRPPSGVREDLRHRLTKTLGVRAADAFAPRNVGGLGRHCARIAAALLEPRDALELSRICGYTVGTCRRHLATMTSLGLLRRSRAGRAVLNVAKLTAAAKRLGTHGHRAQQARWTAVDRAVYAWWREEQQWMRAPKRARRPSAGERSLQLWGSGRREPFPRTGRRADFAEARRLTAQRHGLLPASRLSTDDVVKLLVDQLGAVALEPSGRQEHLSA
>NZ_CP024895.1|WP_009086104.1|140971_142051_-|hypothetical-protein
MSEPGGRAHEERDRRSATRSALRAVEREARILRRRGWAPRDHPRVVPALLEHACRTHRQLLAAAADLAAAWLEGGSVPQTALARYGELVACSRSIRPFLVTGSAQIWHLLYRVGRLVRREPAWARPDGADPCPERPRRRPPHGRAAVVRPQHAGERPRSLIAPHLCTKVSAMPKPGGAKQRPFGQKTRMERPSVDARLHAAMRVAAVQRGEAGTLAYEHIVKAGLKAVGLGNVAKQALESGPVVTKEDMARLERALFARLGLSPRTAKQHPLGLSIRMERPSVDARLHAAMRVAAVQRGEAGTLAYEHIVKAGLKAVGLGDLADYAFAFGTVKTRDDMEKLELALLSMIGLAEEEQMAS
>NZ_CP024895.1|WP_009086103.1|142580_143270_+|hypothetical-protein
MSTTTGPDGAQPPVGPGGGPLVWLPEPGACGGRLDPGQALVPDGLAQQLDFHVRPSVSPWAISPVARTVCEHVDYESLHHAEPGLFEHRQQYGAPAVPELWDAKHRLAALGYHLCLDVQIEEFDGDLALVVYGAGVVGRLTDRAWAAVAGILTTNSSSVVEPPPDAGRPVRPARPATSRGKRKLPAPVTPLGWQVGDWEHTWWEYPLVGPPGDAHLVPVEFGPGARSAA
>NZ_CP024895.1|WP_158688144.1|143760_144171_+|hypothetical-protein
MAPPRLRRGAALCALAAAAAALGGCGSSSSPAGPGASPVSVPPPDARGPVVETVVEVRWADPRPGCMRMEAPAPSGRTQIFRLTGPPAQVLRAQAERGERPVQQRLRVRGYVDTAQDTTACGSYRAFVLTEALPVR
>NZ_CP024895.1|WP_078561297.1|144568_146425_+|S8/S53-family-peptidase
MAGAAVLAGLAAAPVSAQGLAGHPGESDRTAVAGSHPAWAAPQAKVADIDGGQQREVRVALGLRDPAGAQALAKAVTTPGSAQYRKFISPQQFLDRFGPAAETVRQVQDWLRSQGLQVGDVSANRHFVTARGSVDQLQNAFGTRLAAYRKGGLTLAAPEGEVTLPRAVRPAVTAVLGLDDGDRAVTASPHRKPGAAPTAPSAAASSQYCSRYWGEQNNADVPQKYPAGRQSNQICGYGAGQVRAIYGLTDANTGAGQTIAATGVYASKTLVEDVTQWAAEAGGTPPAPGQYTTDASGGLPANCQGGDGEEGWNHEETMDAEAVKATAPAAKFIWYASKDCSAYDGLNRAVADNKAGIITNSWSSTARDNEISQATREQFEDIAIQAAVQGQAILFSSGDAGDDSNGTREPGVNFPVSSPWVTSVGGTTVALGQDNKVAFTSGWESAANTLSGGTWVPKTGASGRFVAGAGGGVSAIYDAPDWQKGVVPSSAQGKRAIPDVSAISDPYTGMTVVMRGKKGPMGGTSLGSPIMAGIFADAQQARGVSRLGHMNPALYKLKAGLTDVTPQKAGIWTRDAQGRDELIDVDDKPQSIQSAPGFDYVAGLGTPNGDFVANFAKK
>NZ_CP024895.1|WP_100267203.1|146532_147489_+|L,D-transpeptidase
MPDPDEHENPGGDSTADRGDADSRADEQPPRPAGRGRVRILALLVAAAAAAALTAVAVASRADTPAPNAPAAAAAADATDTAAETDQVVAPASVTGAELAALPQETTFADLPTAPKDPAPDQQPGGLVLHPKTAVPLYRAPGAAAIAALPPTQLGSDTWVPVIGEQPGWAMVLLPGRPNGSAAWLYRDDPRVDEARTPYVLRVDRAAYRLELVKDGATVRTWTVGVGKPVSPTPAGRAFVLASIRDTKPTFSPIVLPLSMHSDTYTTYGGGPGTIAVHTWPTDGVYGKSSSDGCIRVPPDALTTISRDVPLGTPVLIR
>NZ_CP024895.1|WP_009086095.1|147545_148313_+|hypothetical-protein
MVRTTTIKPRAMLAALAGGSVLAAGVTGIVVGSVGQASAAEASTAYGVSASGTDGLTAQPSVRSAGAVASDSLGSVRSQTGVVKAKGLSVKAGAGTASATVADVTVGGKSIGPVSTTCTDGKASAGRTGTVKLSDTLTVTYGSVSGGKATGAIVTLTGADGGSETALVAVVSCGTKPTNPPTNSPTNPPTNPPTHDPGPGKPDPGQPGPGKPTGGQHAPGKPAAGGKPGTRHGGAPTPKPAPAPQPKPGHQPVTG
>NZ_CP024895.1|WP_009086093.1|148544_148820_+|hypothetical-protein
MRTSPTVISLAALVIATAALIVPPGTRLGERLVGCLTALAQLPWIPAATWAALGVLALAGIVLSALDRSTRPGTVRPRRPRKRPKRRTPPR
>NZ_CP024895.1|WP_009086090.1|149846_150506_+|hypothetical-protein
MRDTASVDALWDDYDHWVKALAYEAVRSYDSTSRAVGKLAAETRQLLAAHGEHPSCVSDTAVILAAELPAAFRPASLRACRRERVGVDGLAATVAELRGHHRKLRPRAGTDRVIDRQLDDLLTVMTALGQQVTEPHPAWPGGWVLRLSRPGTPDLLLREAQRAESRAFRTQDDALAAGALVERDHAGLVCTPRWSPISGGRRPVPADAGAWSDGDTVLG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024895_1	1.1\|136755\|38\|NZ_CP024895\|CRISPRCasFinder	136755-136792	38	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	136755-136792	0	1.0
NZ_CP024895_1	1.2\|136817\|51\|NZ_CP024895\|CRISPRCasFinder	136817-136867	51	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	136817-136867	0	1.0

1. spacer 1.1|136755|38|NZ_CP024895|CRISPRCasFinder matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtgatcgcgggccggttgttcacacttcaaggccgcg	CRISPR spacer
cgtgatcgcgggccggttgttcacacttcaaggccgcg	Protospacer
**************************************

2. spacer 1.2|136817|51|NZ_CP024895|CRISPRCasFinder matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

accgaacgaagcgcccgacgtcggcgacttggcgacgggtccgggcgcaaa	CRISPR spacer
accgaacgaagcgcccgacgtcggcgacttggcgacgggtccgggcgcaaa	Protospacer
***************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024894

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP024895

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection