CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024998	Staphylococcus aureus strain 55-99-44 chromosome, complete genome	7 crisprs	cas3,DEDDh,DinG,csa3,WYL	3	2	9	0
NZ_CP024999	Staphylococcus aureus strain 55-99-44 plasmid punamed1, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024998_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_1

234111-234192

Unclear

Consensus_repeat	Method
TGAAATTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024998_1

>merge|NZ_CP024998|1|234111-234192|CRISPRCasFinder
TGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAATGAAATTCTACAGACAATGCAAGTTGG

>NZ_CP024998|1|1|234111-234192|CRISPRCasFinder
TGAAATTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACACAGAGAATTTCGAAA
TGAAATTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_000562498.1\|232899_233871_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NZ_CP024998.1\|WP_001127269.1\|238624_238939_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226801
NZ_CP024998.1\|WP_054189251.1\|222774_223833_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_CP024998.1\|WP_000866741.1\|242421_243546_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP024998.1\|WP_054189257.1\|236455_237217_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP024998.1\|WP_054189252.1\|225083_226001_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP024998.1\|WP_054189253.1\|226282_227788_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP024998.1\|WP_000876318.1\|234544_235516_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NZ_CP024998.1\|WP_054189256.1\|230676_232782_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
NZ_CP024998.1\|WP_001245577.1\|235502_236459_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_CP024998.1\|WP_054189260.1\|240006_240525_-\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252
NZ_CP024998.1\|WP_000692521.1\|230315_230714_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|224694
NZ_CP024998.1\|WP_054189261.1\|240644_241523_+\|EMYY-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380197
NZ_CP024998.1\|WP_000197261.1\|223990_224533_+\|5'-3'-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
NZ_CP024998.1\|WP_054189255.1\|228648_229515_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP024998.1\|WP_054189259.1\|238956_239880_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|184386
NZ_CP024998.1\|WP_054189258.1\|237335_238364_+\|siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_CP024998.1\|WP_054189254.1\|228128_228629_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
NZ_CP024998.1\|WP_054189250.1\|221020_222535_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_CP024998.1\|WP_000985617.1\|241676_241997_+\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|378538

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_000562498.1\|232899_233871_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
NZ_CP024998.1\|WP_001127269.1\|238624_238939_-\|hypothetical-protein	gnl\|CDD\|226801	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown].	1.41435e-51
NZ_CP024998.1\|WP_054189251.1\|222774_223833_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP024998.1\|WP_000866741.1\|242421_243546_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	1.26111e-160
NZ_CP024998.1\|WP_054189257.1\|236455_237217_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	1.09608e-149
NZ_CP024998.1\|WP_054189252.1\|225083_226001_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.24579e-79
NZ_CP024998.1\|WP_054189253.1\|226282_227788_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	5.05762e-173
NZ_CP024998.1\|WP_000876318.1\|234544_235516_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.32603e-150
NZ_CP024998.1\|WP_054189256.1\|230676_232782_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NZ_CP024998.1\|WP_001245577.1\|235502_236459_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
NZ_CP024998.1\|WP_054189260.1\|240006_240525_-\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	2.06037e-26
NZ_CP024998.1\|WP_000692521.1\|230315_230714_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
NZ_CP024998.1\|WP_054189261.1\|240644_241523_+\|EMYY-motif-lipoprotein	gnl\|CDD\|380197	NF033194, lipo_EMYY, EMYY motif lipoprotein. Members of this family are lipoproteins, about 300 amino acids long in precursor form, found broadly in the genus Staphylococcus and in some related species.	5.4899e-106
NZ_CP024998.1\|WP_000197261.1\|223990_224533_+\|5'-3'-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	6.4494e-108
NZ_CP024998.1\|WP_054189255.1\|228648_229515_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	6.91191e-10
NZ_CP024998.1\|WP_054189259.1\|238956_239880_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|184386	PRK13906, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP024998.1\|WP_054189258.1\|237335_238364_+\|siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.33698e-127
NZ_CP024998.1\|WP_054189254.1\|228128_228629_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	2.56186e-78
NZ_CP024998.1\|WP_054189250.1\|221020_222535_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.62554e-152
NZ_CP024998.1\|WP_000985617.1\|241676_241997_+\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|378538	pfam11009, DUF2847, Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.	1.13449e-42

>NZ_CP024998.1|WP_000562498.1|232899_233871_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>NZ_CP024998.1|WP_054189256.1|230676_232782_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKGGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMGIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>NZ_CP024998.1|WP_000692521.1|230315_230714_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>NZ_CP024998.1|WP_054189255.1|228648_229515_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSALGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAFTYEPMSQTQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKVIKK
>NZ_CP024998.1|WP_054189254.1|228128_228629_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPHSKYEKMAEHRLMNHDLYPEKIDNR
>NZ_CP024998.1|WP_054189253.1|226282_227788_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALTGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>NZ_CP024998.1|WP_054189252.1|225083_226001_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKDYAKDVDILFILGGDGTVNELINGVMIHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDEKTYSGETSMLLTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>NZ_CP024998.1|WP_000197261.1|223990_224533_+|5'-3'-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNGWKDVEQYFLDNIEK
>NZ_CP024998.1|WP_054189251.1|222774_223833_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSIERERFYQLPQSEHFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>NZ_CP024998.1|WP_054189250.1|221020_222535_+|ABC-transporter-permease/substrate-binding-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETQNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKKSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>NZ_CP024998.1|WP_000876318.1|234544_235516_+|ABC-transporter-permease
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>NZ_CP024998.1|WP_001245577.1|235502_236459_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>NZ_CP024998.1|WP_054189257.1|236455_237217_+|ABC-transporter-ATP-binding-protein
MIQVGNLTKTINNQMILEDISIEIEKGKLTSLIGPNGAGKSTLLSAICRLIRFDNGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGRLVKSDLKDNVIQSSVLSDLYDMDIHIEHIRNQRICLYFKD
>NZ_CP024998.1|WP_054189258.1|237335_238364_+|siderophore-ABC-transporter-substrate-binding-protein
MKKTVLYLVLAVMFLLAACGNNSDKEQSKSETKGSKDTVKIENNYKMRGEKKDGSDAKKVKETVEVPKNPKNAVVLDYGALDVMKEMGLSDKVKALPKGEGGKSLPNFLESFKDEKYTNVGNLKEVNFDKIAATKPEVIFISGRTANQKNLDEFKKAAPKAKIVYVGADEKNLVGSMKQNTENIGKIYDKEVKAKELNKDLDNKIASMKDKTKNFNKTVMYLLVNEGELSTFGPKGRFGGLVYDTLGFNAVDKKVSNSNHGQNVSNEYVNKENPDVILAMDRGQAVSGKSTAKQALNNPVLKNVKAIKEDKVYNLDPKLWYFAAGSTTTTIKQIEELDKVVK
>NZ_CP024998.1|WP_001127269.1|238624_238939_-|hypothetical-protein
MPKVYGSLIDTETRCRHYFTEEDIIAIKFKCCNKYYPCYKCHNEFEKHAIKRWSEPSFNEKAILCGVCKHELTINEYMMVERCPNCQSRFNNRCKYHYHIYFEI
>NZ_CP024998.1|WP_054189259.1|238956_239880_-|UDP-N-acetylmuramate-dehydrogenase
MINKDIYQALQQLIPNEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVISLLSLDHIEVSDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTAKELELDYRNSIIQKEHLVVLEAAFTLAPGKLTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIKLNREVRIIGEHPKES
>NZ_CP024998.1|WP_054189260.1|240006_240525_-|GrpB-family-protein
MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILVGVENLHDITSLDEKRLNYVGFYRLHHKYNKKVMMAKFNNFHELKQQVRLHIIQMNTQTFESYLALDRLLSTNDEIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL
>NZ_CP024998.1|WP_054189261.1|240644_241523_+|EMYY-motif-lipoprotein
MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHLSKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMRVKKLKKEYMTLANEKKDVIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHNNKALRDTAKKNLDDSKENEIKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMYYSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
>NZ_CP024998.1|WP_000985617.1|241676_241997_+|bacillithiol-system-redox-active-protein-YtxJ
MAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGEMVWNRDHGDINVSSLAQAEE
>NZ_CP024998.1|WP_000866741.1|242421_243546_+|glycerate-kinase
MKVLVAMDEFHGIISSYQANRYVEEAVASQIETADVVQVPLFNGRHELLDSVFLWQSGQKYRIPVHDADMNEVEGVYGQTDTGMTVIEGNLFLKGKKPIVERTSYGLGEMIKHALDNDAKHVVISLGGIDSFDAGAGMLQALGAQFYDDEGRVVDMRQGAGVIKYIRRMDMSNLHPKMETARIQVMSDFSSRLYGKQSEIMQTYDAHQLNHNQAAEIDNLIWYFSELFKSELKIAIGPVERGGAGGGIAAVLNGLYQAEILTSHALVDQLTHLENLVEQADLIIFGEGLNENDQLLETTTLRIAELCHKHQKVAIAICATAEKFDLFESQGVTAMFNTFIDMPESYTDFKMGLQIRHYTVQSLKLLKTHFNVEV

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Crispr_ID: NZ_CP024998_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_2

453304-453394

Orphan

Consensus_repeat	Method
ATAATGTGCAAGTTGGGGTGTGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024998_2

>merge|NZ_CP024998|2|453304-453394|CRISPRCasFinder
ATAATGTGCAAGTTGGGGTGTGGGCCCCAACACAGAAGCTGGCGGAAAGTCAGCATAAAATAATGTGCAAGTTGGGGTGTGGGCCCCAACA

>NZ_CP024998|2|2|453304-453394|CRISPRCasFinder
ATAATGTGCAAGTTGGGGTGTGGGCCCCAACA	CAGAAGCTGGCGGAAAGTCAGCATAAA
ATAATGTGCAAGTTGGGGTGTGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_054190335.1\|460807_461611_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP024998.1\|WP_054190345.1\|449244_449529_+\|lactococcin-972-family-bacteriocin	unknown	unknown	gnl\|CDD\|370615
NZ_CP024998.1\|WP_054190346.1\|446251_447238_-\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NZ_CP024998.1\|WP_000766009.1\|453653_454010_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP024998.1\|WP_001788574.1\|455697_455988_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225196
NZ_CP024998.1\|WP_077446593.1\|455502_455634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_077446597.1\|457768_457846_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054190336.1\|459147_460821_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|224087
NZ_CP024998.1\|WP_000070966.1\|456679_457618_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP024998.1\|WP_001033867.1\|447627_448230_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
NZ_CP024998.1\|WP_000214898.1\|447436_447613_+\|YkvS-family-protein	unknown	unknown	gnl\|CDD\|227210
NZ_CP024998.1\|WP_054190340.1\|454497_455457_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226959
NZ_CP024998.1\|WP_077446596.1\|457949_459161_+\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|273127
NZ_CP024998.1\|WP_077446589.1\|452585_452876_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054190342.1\|451856_452498_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|188353
NZ_CP024998.1\|WP_054190344.1\|449572_451537_+\|bacteriocin-associated-integral-membrane-family-protein	unknown	unknown	gnl\|CDD\|226999
NZ_CP024998.1\|WP_099119695.1\|448529_448607_+\|putative-holin-like-toxin	unknown	unknown	unknown
NZ_CP024998.1\|WP_077446590.1\|453016_453154_+\|poly(glycerol-phosphate)-alpha-glucosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP024998.1\|WP_054190338.1\|456077_456629_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP024998.1\|WP_054190343.1\|451539_451860_+\|YxeA-family-protein	unknown	unknown	gnl\|CDD\|227613

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_054190335.1\|460807_461611_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	2.98551e-120
NZ_CP024998.1\|WP_054190346.1\|446251_447238_-\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	1.39722e-115
NZ_CP024998.1\|WP_000766009.1\|453653_454010_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.02436e-17
NZ_CP024998.1\|WP_001788574.1\|455697_455988_-\|TM2-domain-containing-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	4.16855e-10
NZ_CP024998.1\|WP_077446596.1\|457949_459161_+\|isochorismate-synthase	gnl\|CDD\|273127	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases. This enzyme interconverts chorismate and isochorismate. In E. coli, different loci encode isochorismate synthases for the pathways of menaquinone biosynthesis and enterobactin biosynthesis (via salicilate) and fail to complement each other. Among isochorismate synthases, the N-terminal domain is poorly conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	5.3983e-157
NZ_CP024998.1\|WP_054190336.1\|459147_460821_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
NZ_CP024998.1\|WP_000214898.1\|447436_447613_+\|YkvS-family-protein	gnl\|CDD\|227210	COG4873, COG4873, Uncharacterized protein conserved in bacteria [Function unknown].	1.25817e-27
NZ_CP024998.1\|WP_054190340.1\|454497_455457_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226959	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism].	8.57664e-150
NZ_CP024998.1\|WP_000070966.1\|456679_457618_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	3.61649e-125
NZ_CP024998.1\|WP_054190342.1\|451856_452498_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|188353	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	2.24705e-99
NZ_CP024998.1\|WP_054190344.1\|449572_451537_+\|bacteriocin-associated-integral-membrane-family-protein	gnl\|CDD\|226999	COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP024998.1\|WP_054190345.1\|449244_449529_+\|lactococcin-972-family-bacteriocin	gnl\|CDD\|370615	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972). These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.	4.61027e-09
NZ_CP024998.1\|WP_077446590.1\|453016_453154_+\|poly(glycerol-phosphate)-alpha-glucosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	9.89998e-07
NZ_CP024998.1\|WP_054190338.1\|456077_456629_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.15599e-08
NZ_CP024998.1\|WP_054190343.1\|451539_451860_+\|YxeA-family-protein	gnl\|CDD\|227613	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown].	2.34478e-38

>NZ_CP024998.1|WP_077446590.1|453016_453154_+|poly(glycerol-phosphate)-alpha-glucosyltransferase
MADKILKLVNNDVLAEVFGSKARKNIIEKYSTESILEKWLNLFNS
>NZ_CP024998.1|WP_077446589.1|452585_452876_-|hypothetical-protein
MYWTCHFKNKIGGVILTRTYNIIGILSCLLSFIIMVLPMIWNAASALWFFPGAIIILLLSLVIVFCYIKTKNQLHLLLIVLNIIILLFFSLPLLLS
>NZ_CP024998.1|WP_054190342.1|451856_452498_+|ABC-transporter-ATP-binding-protein
MIELKDLTIQKGKTHILKKLNLKFQCGKSYALIGKSGCGKSTLLNTIAGLEKTGKQYVYFNGQLEQFKSNFYRDKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQLKIRYIEQFGLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSLFDLVNENKVLILATHDMAIANQCDEIIDLEQYRKVASM
>NZ_CP024998.1|WP_054190343.1|451539_451860_+|YxeA-family-protein
MKFIIAILLGLIVSITIAFTIIHHPILDRFNPFLKTEYSYAKVPKGTQQYVNITAYSERGEKLGYKLTFNGFSPSRTYVEIKHKGQYVISITYVEKEDTPKEVRQE
>NZ_CP024998.1|WP_054190344.1|449572_451537_+|bacteriocin-associated-integral-membrane-family-protein
MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRINQFARNENVAIYKSTSNYTNKNVDKDIYVFNKSKATTITPFNAKYNIHYLSDDELLKKDIKGSYFVKDKNFDVSKFINFLKEYGVNAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYIFEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLDLFILRLVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVLIASVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKASEAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYHKQFQPDIPIENQKNNVEVIIPQKFHEVRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDYRIFTFDARDNRHLSFIEAPIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMYHENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLINNIVVVFIGILTDVILHSRYIMMIFATIIVVQILLQICSLYYHGRRFNEVIKEF
>NZ_CP024998.1|WP_054190345.1|449244_449529_+|lactococcin-972-family-bacteriocin
MKNKIFGAILYLTLALGLSTAAYASTEYAEGGTWSHGVGSKYVWSYYYHGHKGHGATAIGKYRSFSGYTRAGVKAKASATKHNWWVNRAYYNIY
>NZ_CP024998.1|WP_099119695.1|448529_448607_+|putative-holin-like-toxin
MLSFGMFIVTFIGVVVAIINLNNKK
>NZ_CP024998.1|WP_001033867.1|447627_448230_+|CPBP-family-intramembrane-metalloprotease
MNKISKALTWFIISFIIFHLILFIMWGEHQEYWYLYTGIMLIAGISYVFYQRDIESKRLLTSIGVGIITAIILIMLQLLFSLITSNLSYSSLIKELARTGVNWKWQMLVTLLFVIPCHELYMRTVLQKELTHFSIPKWVAILITAICSSSLFIYLDNWWIVTFIFVAQVILSLSYEYTRRIATTSVAQIVAIILLLIFNA
>NZ_CP024998.1|WP_000214898.1|447436_447613_+|YkvS-family-protein
MTVAEVGNIVEFMDGLRGRVEKINDNSVIVDLTIMENFNDLDLPEKTVINHKRYKIVE
>NZ_CP024998.1|WP_054190346.1|446251_447238_-|lipoate--protein-ligase
MKFISNNNITDPTLNLAMEEYVLKNLPAEESYFLFYINRPSIIVGKNQNTIEEVNQTYIDAHNIDVVRRISGGGAVYHDTGNLNFSFITDDDGNSFHNFQKFTEPIVQALQSLGVNAELTGRNDIQVGQAKISGNAMVKVKNRMFSHGTLMLNSDLDEVQNALKVNPAKIKSKGIKSVRKRVANIQEFLNDPLEIEEFKKIILKTIFGETEVEEYKLTDEDWKNIEKLSNDKYRTWEWNYGRNPKYNFEREEKFEKGFVQIKFDVKRGKIEHAKIFGDFFGVGDVTDLENALVGCLHDFEHIEEALTEYDLYHYFGDIDKHELIRLMS
>NZ_CP024998.1|WP_000766009.1|453653_454010_-|DoxX-family-protein
MKLGMLLIRWMLATSFLVHGTLKFVDLDGTIHFLGSLGLPPTIAVLMSIGEVVGGLALIIGFLTPYVNVFYICVMLGSIFTLKLTRGYVSGYEFEIIHIVMNLACISSYSWKKWLQFY
>NZ_CP024998.1|WP_054190340.1|454497_455457_+|ABC-transporter-substrate-binding-protein
MNRNLFKLVMFILIFVVLAAGCGQKDTEDKQEMTTIKDELGTEKIKKNSKRVVVLEYSFADYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGENRLEKHDKILAEIRKKIEQSTLKSAFAFGISREGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK
>NZ_CP024998.1|WP_077446593.1|455502_455634_-|hypothetical-protein
MRYVTMRQFIKRIVKTILVGYVIKFIRNKISGKSSHPTDNKHN
>NZ_CP024998.1|WP_001788574.1|455697_455988_-|TM2-domain-containing-protein
MKILKLEILVFTTNLSRIIVKEDLQMKVNKAIYVIVALFLGGLGIHKFYADKFGQGLFHLLFFWTGIPTIISIIHAIFVIFTKKADKDGYIIFPKN
>NZ_CP024998.1|WP_054190338.1|456077_456629_+|GNAT-family-N-acetyltransferase
MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKSCVDATYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWELLDLPEEIKQYGTPLPVKEAKDDEYYIETIATFASYRGRGIATKLLTSLLESNTHVKWSLNCDINNEAALNLYKKVGFISDGQIELYKHMYHHLIVK
>NZ_CP024998.1|WP_000070966.1|456679_457618_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MSNQYQQYSTVKKYWHLMRPHTLTASVVPVLVGTAASKIYFLGSEDHIKISLFIAMLLACLLIQAATNMFNEYYDYKKGLDDHESVGIGGAIVRNGMSPELVLRLAIAFYILAAILGLFLAANSSFWLLPVGLVCMAVGYLYTGGPFPISWTPFGELFSGVFMGMFIIVIAFFIQTGNIQSYVIWLSVPIVITIGLINMANNIRDRVKDKASGRKTLPILLGKNASLTFMAIMYFIAYAFIVLTIIIKPGGSLFYLLALLSFPMPVKVIRRFKKNDTPPTMMPAMAAAGKTNTFFGLLYALGIYISALFAGI
>NZ_CP024998.1|WP_077446597.1|457768_457846_+|hypothetical-protein
MKKDEERSEMDGYGRNRGLYCQRDI
>NZ_CP024998.1|WP_077446596.1|457949_459161_+|isochorismate-synthase
MRLNDNQTSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSERHHLRLVGGFQFSSHKSDDEWREFGLNHFVLPEVLISTDINGTFLTYTVKQGNFNIDVLNGLVNFFNDATDIDVDEQIGEITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNSYIFLLESQDSIFFSQTPEQLMKVNNQILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNLIEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHPTPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFAGCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
>NZ_CP024998.1|WP_054190336.1|459147_460821_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MGNHKAALTKQVFTFASELYAYGVREVVISPGSRSTPLALAFEAHPNIKTWIHPDERSAAFFAVGLIKGSERPVAILCTSGTAAANYTPAIAESQISRIPLIVLTSDRPHELRSVGAPQAINQVNMFNNYVSYEFDMPIADDSKETIDAIYYQMQIASQYLYGPHKGPIHFNLPFRDPLTPDLNATELLTSEMKILPHYQKSIDASALRHILNKKKGLIIVGDMQHQEVDQILTYSTIYELPILADPLSHLRKFDHPNVICTYDLLFRSGLDLKVDFVIRVGKPVISKKLNQWLKKTDAFQILVQNNDKIDVFPIAPDISYEISANDFFRSLMEETTVNRVSWLEKWQCLEIKGRKEIECYIEQATDESAFVGELIKKTSEKDALFISNSMPIRDIDNLLLNKNIDVYANRGANGIDGIVSTALGMAVHKQITLLIGDLSFYHDMNGLLMSKLNNIQMNIVLLNNDGGGIFSYLPQKESATDYFERLFGTPTGLDFEYTAKLYQFDFKRFNSVSEFKNAALLSETSTIYELITNREDNFKQHQILYQKLSEMIHDTL
>NZ_CP024998.1|WP_054190335.1|460807_461611_+|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MTHYNYYEANVETNQVLVLLHGFLSDSRTYHNHIDKYTDICHVITIDLPGHGEDQSSMDETWNFDYITTLLDRILVKYKYKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLELPVETQHQIRQQRLSQLPQKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFLQIAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKEEQND

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Crispr_ID: NZ_CP024998_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_3

1226264-1226347

Orphan

Consensus_repeat	Method
TTCTACAGACAATGCAAGTTGGGGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024998_3

>merge|NZ_CP024998|3|1226264-1226347|CRISPRCasFinder
TTCTACAGACAATGCAAGTTGGGGTGGGTCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGGCTGGG

>NZ_CP024998|3|3|1226264-1226347|CRISPRCasFinder
TTCTACAGACAATGCAAGTTGGGGTGGG	TCCCAACACAGAGAATTTCGAAAAGAAA
TTCTACAGACAATGCAAGTTGGGCTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_000717561.1\|1214596_1215565_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP024998.1\|WP_000689998.1\|1228715_1229834_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP024998.1\|WP_054190115.1\|1226480_1227170_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP024998.1\|WP_054190112.1\|1217829_1219059_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NZ_CP024998.1\|WP_054190117.1\|1232010_1232958_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP024998.1\|WP_054190118.1\|1233672_1234443_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP024998.1\|WP_054190113.1\|1219508_1222706_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP024998.1\|WP_000634175.1\|1229974_1230475_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP024998.1\|WP_054190114.1\|1222726_1223668_-\|pApA-hydrolase-Pde2	unknown	unknown	gnl\|CDD\|223691
NZ_CP024998.1\|WP_000883646.1\|1215833_1216778_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP024998.1\|WP_000277602.1\|1225622_1226036_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP024998.1\|WP_001232650.1\|1212817_1214575_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_CP024998.1\|WP_000161665.1\|1227344_1228400_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP024998.1\|WP_000818525.1\|1211108_1212470_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP024998.1\|WP_000471571.1\|1216777_1217635_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP024998.1\|WP_054190119.1\|1234486_1235710_-\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NZ_CP024998.1\|WP_000136257.1\|1233080_1233575_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP024998.1\|WP_000160435.1\|1224119_1225418_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226594
NZ_CP024998.1\|WP_054190116.1\|1230720_1231923_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP024998.1\|WP_031775021.1\|1228478_1228592_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_000717561.1\|1214596_1215565_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP024998.1\|WP_000689998.1\|1228715_1229834_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_CP024998.1\|WP_054190115.1\|1226480_1227170_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.69655e-133
NZ_CP024998.1\|WP_054190112.1\|1217829_1219059_-\|malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP024998.1\|WP_054190117.1\|1232010_1232958_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.2067e-56
NZ_CP024998.1\|WP_054190113.1\|1219508_1222706_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP024998.1\|WP_000634175.1\|1229974_1230475_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
NZ_CP024998.1\|WP_054190114.1\|1222726_1223668_-\|pApA-hydrolase-Pde2	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	6.75954e-98
NZ_CP024998.1\|WP_000883646.1\|1215833_1216778_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP024998.1\|WP_000277602.1\|1225622_1226036_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
NZ_CP024998.1\|WP_001232650.1\|1212817_1214575_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_CP024998.1\|WP_000161665.1\|1227344_1228400_+\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	4.3874e-126
NZ_CP024998.1\|WP_000818525.1\|1211108_1212470_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP024998.1\|WP_000471571.1\|1216777_1217635_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP024998.1\|WP_054190119.1\|1234486_1235710_-\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	0
NZ_CP024998.1\|WP_054190118.1\|1233672_1234443_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.06935e-38
NZ_CP024998.1\|WP_000160435.1\|1224119_1225418_-\|CBS-domain-containing-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
NZ_CP024998.1\|WP_054190116.1\|1230720_1231923_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP024998.1\|WP_000136257.1\|1233080_1233575_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100

>NZ_CP024998.1|WP_000277602.1|1225622_1226036_+|universal-stress-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>NZ_CP024998.1|WP_000160435.1|1224119_1225418_-|CBS-domain-containing-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>NZ_CP024998.1|WP_054190114.1|1222726_1223668_-|pApA-hydrolase-Pde2
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYGTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLAQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVNSWDEFEQLATALRKKLN
>NZ_CP024998.1|WP_054190113.1|1219508_1222706_-|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLSVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTIETVVLAKDNNGLKDLYQLSSKIKMNSMENVSFELLQQFSSNLIIIFKNVADEHRDIVQVFDSHEDTYLDHRSVLIQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFDAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPYQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKMFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGVETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDLRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSHIDTFEEMIKATKENANDVVLFFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>NZ_CP024998.1|WP_054190112.1|1217829_1219059_-|malate-dehydrogenase
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMSDNPIIFAMANPNPEIIPDDAKAVGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>NZ_CP024998.1|WP_000471571.1|1216777_1217635_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>NZ_CP024998.1|WP_000883646.1|1215833_1216778_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVEQLDSLESLSRDEIANDRFEKFRNIGSYIE
>NZ_CP024998.1|WP_000717561.1|1214596_1215565_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>NZ_CP024998.1|WP_001232650.1|1212817_1214575_-|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVTNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>NZ_CP024998.1|WP_000818525.1|1211108_1212470_+|amino-acid-permease
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>NZ_CP024998.1|WP_054190115.1|1226480_1227170_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQI
>NZ_CP024998.1|WP_000161665.1|1227344_1228400_+|aminopeptidase-P-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>NZ_CP024998.1|WP_031775021.1|1228478_1228592_-|hypothetical-protein
MNDIDLIHYMLLMNIPAYVFLACLLHIAFRLGQKFMS
>NZ_CP024998.1|WP_000689998.1|1228715_1229834_-|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>NZ_CP024998.1|WP_000634175.1|1229974_1230475_+|universal-stress-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>NZ_CP024998.1|WP_054190116.1|1230720_1231923_-|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLVERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVITFGGLK
>NZ_CP024998.1|WP_054190117.1|1232010_1232958_-|class-I-SAM-dependent-methyltransferase
MAEQQTIMERLFHTIDEKAKTLNNENGQSFIENLGLAMEQVYTNDRGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVNEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINTLKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>NZ_CP024998.1|WP_000136257.1|1233080_1233575_-|thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>NZ_CP024998.1|WP_054190118.1|1233672_1234443_-|TSUP-family-transporter
MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSAIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALLSVFIFTLLKKDWGNTRTFTQFTFKKAILFAALFTLIGFYDGFVGGGTGSFMLFVLLIFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLVMAASMIAGSYVGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV
>NZ_CP024998.1|WP_054190119.1|1234486_1235710_-|tRNA-4-thiouridine(8)-synthase-ThiI
MKYDHLLVRYGELTLKGSNRKKFVNQLRNNVNKSLKGLDGFVVKGKRDRMYIELEDHADINEITYRLSKIFGIKSISPVLKVEKTIEAMSAAAIKFAQQFKENSTFKIDVKRADKNFPMDTYELQRELGGTVLKQIENVSVNVKRPDHEIRVEVRLDAIYMYEEVVPGAGGLPVGTGGKTLLMLSGGIDSPVAGMEVMRRGVTIEAIHFHSPPFTSDQAKEKVIELTRILAERVGPIKLHIVPFTELQKQVNKVVHPRYTMTSTRRMMMRVADKLVHQIGALAIVNGENLGQVASQTLHSMYAINNVTSTPVLRPLLTYDKEEIIIKSKEIGTFETSIQPFEDCCTIFTPKNPVTEPNFDKVVQYESVFDFEEMINRAVENIETLEITSDYKTIKEQQTNQLINDFL

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Crispr_ID: NZ_CP024998_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_4

1487118-1487206

Orphan

Consensus_repeat	Method
CAATCCAATTTCTCTATGTTGGGGCCCCACC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP024998_4

>merge|NZ_CP024998|4|1487118-1487206|CRISPRCasFinder
CAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTACATTGCTTGTAGAAATTGGCAATCCAATTTCTCTATGTTGGGGCCCCACC

>NZ_CP024998|4|4|1487118-1487206|CRISPRCasFinder
CAATCCAATTTCTCTATGTTGGGGCCCCACC	CCAACTTACATTGCTTGTAGAAATTGG
CAATCCAATTTCTCTATGTTGGGGCCCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_054189624.1\|1499971_1501267_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
NZ_CP024998.1\|WP_001790257.1\|1478530_1478641_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_000545370.1\|1487643_1489071_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP024998.1\|WP_000949467.1\|1481066_1481567_+\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_CP024998.1\|WP_000272064.1\|1498697_1499390_-\|heptaprenylglyceryl-phosphate-synthase	unknown	unknown	gnl\|CDD\|224560
NZ_CP024998.1\|WP_054189628.1\|1486037_1486985_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
NZ_CP024998.1\|WP_000170162.1\|1490542_1490845_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP024998.1\|WP_001165363.1\|1499561_1499864_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226893
NZ_CP024998.1\|WP_054189625.1\|1496508_1498701_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP024998.1\|WP_054189630.1\|1483895_1484426_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP024998.1\|WP_054189632.1\|1478728_1479460_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP024998.1\|WP_054189627.1\|1491211_1492750_+\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP024998.1\|WP_054189629.1\|1484595_1485957_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP024998.1\|WP_000831695.1\|1493289_1494489_-\|CamS-family-sex-pheromone-protein	unknown	unknown	gnl\|CDD\|227188
NZ_CP024998.1\|WP_000613738.1\|1481957_1482512_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP024998.1\|WP_054189631.1\|1479461_1480775_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP024998.1\|WP_048523903.1\|1482578_1483649_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP024998.1\|WP_001790679.1\|1481648_1481741_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054189626.1\|1494501_1496505_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP024998.1\|WP_000027928.1\|1489083_1490541_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_054189624.1\|1499971_1501267_-\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP024998.1\|WP_000545370.1\|1487643_1489071_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP024998.1\|WP_000949467.1\|1481066_1481567_+\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
NZ_CP024998.1\|WP_000272064.1\|1498697_1499390_-\|heptaprenylglyceryl-phosphate-synthase	gnl\|CDD\|224560	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only].	1.2971e-99
NZ_CP024998.1\|WP_054189628.1\|1486037_1486985_-\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
NZ_CP024998.1\|WP_000170162.1\|1490542_1490845_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	5.296e-34
NZ_CP024998.1\|WP_001165363.1\|1499561_1499864_-\|hypothetical-protein	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	1.66593e-59
NZ_CP024998.1\|WP_054189625.1\|1496508_1498701_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP024998.1\|WP_054189630.1\|1483895_1484426_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	3.20825e-11
NZ_CP024998.1\|WP_054189632.1\|1478728_1479460_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.80943e-120
NZ_CP024998.1\|WP_054189627.1\|1491211_1492750_+\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP024998.1\|WP_054189629.1\|1484595_1485957_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
NZ_CP024998.1\|WP_000831695.1\|1493289_1494489_-\|CamS-family-sex-pheromone-protein	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	0
NZ_CP024998.1\|WP_000613738.1\|1481957_1482512_+\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_CP024998.1\|WP_054189631.1\|1479461_1480775_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	9.1179e-99
NZ_CP024998.1\|WP_048523903.1\|1482578_1483649_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP024998.1\|WP_054189626.1\|1494501_1496505_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP024998.1\|WP_000027928.1\|1489083_1490541_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0

>NZ_CP024998.1|WP_054189628.1|1486037_1486985_-|diacylglycerol-kinase
MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAIHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>NZ_CP024998.1|WP_054189629.1|1484595_1485957_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNKVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEIVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>NZ_CP024998.1|WP_054189630.1|1483895_1484426_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQYEDSIYLYHQKPTQ
>NZ_CP024998.1|WP_048523903.1|1482578_1483649_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVRDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_CP024998.1|WP_000613738.1|1481957_1482512_+|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_CP024998.1|WP_001790679.1|1481648_1481741_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_CP024998.1|WP_000949467.1|1481066_1481567_+|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>NZ_CP024998.1|WP_054189631.1|1479461_1480775_-|Mur-ligase-family-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIIERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_CP024998.1|WP_054189632.1|1478728_1479460_-|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVLEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>NZ_CP024998.1|WP_001790257.1|1478530_1478641_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NZ_CP024998.1|WP_000545370.1|1487643_1489071_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR
>NZ_CP024998.1|WP_000027928.1|1489083_1490541_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL
>NZ_CP024998.1|WP_000170162.1|1490542_1490845_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA
>NZ_CP024998.1|WP_054189627.1|1491211_1492750_+|sodium/proline-symporter-PutP
MLTMGTALSQQVDTNWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAITLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVAFIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNLFKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVGLTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLIRGEEKAKTHQKEFVMIGRLSVLVVAIVAIAIAWNPNDTILNLVGNAWAGFGASFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVSVIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
>NZ_CP024998.1|WP_000831695.1|1493289_1494489_-|CamS-family-sex-pheromone-protein
MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGPTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN
>NZ_CP024998.1|WP_054189626.1|1494501_1496505_-|NAD-dependent-DNA-ligase-LigA
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEYPEYKTVDSPTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVEIHDIGDKVAQSVVTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS
>NZ_CP024998.1|WP_054189625.1|1496508_1498701_-|DNA-helicase-PcrA
MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANMNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKRGFSQRTTSTKKQVSSSDWNVGDKVMHKAWGEGMVSNVNVKNGSIELDIIFKSQGPKRLLAQFAPIEKKED
>NZ_CP024998.1|WP_000272064.1|1498697_1499390_-|heptaprenylglyceryl-phosphate-synthase
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRVRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK
>NZ_CP024998.1|WP_001165363.1|1499561_1499864_-|hypothetical-protein
MQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETNE
>NZ_CP024998.1|WP_054189624.1|1499971_1501267_-|adenylosuccinate-lyase
MIERYSREEMSKIWTDQNRYEAWLEVEILACEAWSELGHIPKADVQKIRQNAKVNVERAQEIEQETRHDVVAFTRQVSETLGEERKWVHYGLTSTDVVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEIEVGKMSGAVGTFANIPPEIESYVCKHLGIGTAPVSTQTLQRDRHAYYIATLALIATSLEKFAVEIRNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITGISRVIRGYITTAYENVPLWHERDISHSSAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNIDKTFGLIFSQRVLLALINKGMVREEAYDKVQPKAMISWETKTPFRELIEQDESITSVLTKEELDECFDPKHHLNQVDTIFERAGLA

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Crispr_ID: NZ_CP024998_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_5

1665323-1665418

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTTATGCAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP024998_5

>merge|NZ_CP024998|5|1665323-1665418|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

>NZ_CP024998|5|5|1665323-1665418|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAG	TTGATGCGTAGCATCCAACTGTATTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTCTTATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_054190820.1\|1683368_1684724_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP024998.1\|WP_054190806.1\|1656454_1656898_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP024998.1\|WP_054190810.1\|1661634_1662300_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP024998.1\|WP_054190816.1\|1671751_1673884_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP024998.1\|WP_054190808.1\|1659998_1660229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054190818.1\|1674329_1675436_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP024998.1\|WP_000334465.1\|1667692_1669498_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP024998.1\|WP_054190811.1\|1662773_1663754_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP024998.1\|WP_054190807.1\|1657097_1657511_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP024998.1\|WP_054190814.1\|1666679_1667462_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP024998.1\|WP_054190817.1\|1673895_1674330_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_CP024998.1\|WP_054190813.1\|1665754_1666612_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP024998.1\|WP_000003759.1\|1662451_1662772_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP024998.1\|WP_054190812.1\|1664215_1665307_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_100793828.1\|1657952_1659326_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP024998.1\|WP_054191888.1\|1670178_1671717_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP024998.1\|WP_000220900.1\|1665514_1665607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054190809.1\|1660259_1661198_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP024998.1\|WP_054190819.1\|1675754_1683092_-\|DUF1542-domain-containing-protein	unknown	unknown	gnl\|CDD\|275089
NZ_CP024998.1\|WP_054190805.1\|1655624_1656335_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_054190820.1\|1683368_1684724_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP024998.1\|WP_054190806.1\|1656454_1656898_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.04833e-67
NZ_CP024998.1\|WP_054190810.1\|1661634_1662300_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.04849e-48
NZ_CP024998.1\|WP_054190816.1\|1671751_1673884_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	8.07378e-67
NZ_CP024998.1\|WP_054190813.1\|1665754_1666612_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	2.26647e-58
NZ_CP024998.1\|WP_054190818.1\|1674329_1675436_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP024998.1\|WP_000334465.1\|1667692_1669498_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP024998.1\|WP_054190807.1\|1657097_1657511_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	6.42561e-45
NZ_CP024998.1\|WP_054190814.1\|1666679_1667462_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.43842e-105
NZ_CP024998.1\|WP_054190817.1\|1673895_1674330_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	7.52983e-63
NZ_CP024998.1\|WP_000003759.1\|1662451_1662772_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP024998.1\|WP_054190811.1\|1662773_1663754_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	6.66959e-108
NZ_CP024998.1\|WP_100793828.1\|1657952_1659326_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.0026e-06
NZ_CP024998.1\|WP_054191888.1\|1670178_1671717_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP024998.1\|WP_054190809.1\|1660259_1661198_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	6.45152e-129
NZ_CP024998.1\|WP_054190819.1\|1675754_1683092_-\|DUF1542-domain-containing-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.4008e-104
NZ_CP024998.1\|WP_054190805.1\|1655624_1656335_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.55756e-156

>NZ_CP024998.1|WP_054190812.1|1664215_1665307_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYAFIAFAVIAVVYLLANFQLAKYSQTIAIYSQFGQKPPGDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMNHEKVKFTDLFIAFKKGIYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPVFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSFSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKLTKDKVKSADKNKKVVTEPKNTKVENEKVTTSVETKTEKAQDSLNDNTTNTMTSDKPEDNQPK
>NZ_CP024998.1|WP_054190811.1|1662773_1663754_+|CDF-family-zinc-efflux-transporter-CzrB
MSHPHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATATKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAIFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHNHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_CP024998.1|WP_000003759.1|1662451_1662772_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP024998.1|WP_054190810.1|1661634_1662300_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVAFTAGVRQTDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSIIASKEANIKHYVMVSTYDSRRQAFDDSCDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFENETD
>NZ_CP024998.1|WP_054190809.1|1660259_1661198_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEITNGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHRCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP024998.1|WP_054190808.1|1659998_1660229_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISALLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP024998.1|WP_100793828.1|1657952_1659326_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRSGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP024998.1|WP_054190807.1|1657097_1657511_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDHIYFESQAIIQLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP024998.1|WP_054190806.1|1656454_1656898_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYTAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP024998.1|WP_054190805.1|1655624_1656335_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKANNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_CP024998.1|WP_000220900.1|1665514_1665607_+|hypothetical-protein
MTYGSIIAIVCALFVIFFIPYMEKNNKKKK
>NZ_CP024998.1|WP_054190813.1|1665754_1666612_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPEDFAVNGIISSNGTIGEVDGEIIVKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPVNGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKRNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMISHFGIKQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP024998.1|WP_054190814.1|1666679_1667462_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINEGDKWILYGLNGAGKTTLLNILNAYESVTSGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDALSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP024998.1|WP_000334465.1|1667692_1669498_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP024998.1|WP_054191888.1|1670178_1671717_+|PTS-mannitol-transporter-subunit-IICB
MSQIEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIVGFKVLAPIMKFIMYILSVAVESLVHAHLLPVVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFFGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTKEPKQDLEAATAQMETTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSLDNDSEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP024998.1|WP_054190816.1|1671751_1673884_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGEDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLEFDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQFDGIISTVNLEIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINNPTSFAELLEQRLIDNPGWILCPYPVAIPHLRDNMIKHPMILTTVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP024998.1|WP_054190817.1|1673895_1674330_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGITLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP024998.1|WP_054190818.1|1674329_1675436_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDNSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKNLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP024998.1|WP_054190819.1|1675754_1683092_-|DUF1542-domain-containing-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAADQNQPVGANAQPTANAGTQADPNANQPAAPANQGQPVAQPANQGGQVDPNNAGQPQPANQAGQTAPAGGAVQPNAQPAGQGNQPDPNNVAQAQPANATVAQPAAPVPANAQAQDPNASNTGEGSINTTLTFDDPAITTDKNRQDPTVTVTDRLNDYSLINNGKIGFVNSELRRSDMFDKNSPQNYQARGNVAALGRVNANDPNNHGDFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIRDAKKNTELATVKVGRTGTAHLFKVPTDADRLDLQFIPDNTAVADATRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLEAKATNNKEYTINTEIGNNGNFGASLKANEFKYEVTLPQGVTYVNDSLTTAFPDGNDDSTVLKNMTVNYDQNANTLTFTSQGVTTARGTNTKEVLFPDKSLKISYKVNVANIATPQNINFNEKLTYRTASDVIVGNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILSEDANHVETANRASQADIDGLVTKLQAALINKQTAVSDLDTKAQEMITLANQNNKVTQDEKDALIVKINNDKNNAIAEINKQTTTQGVTTEKDKGIAVLEQDIITPNVKPQAKQAIIQAVTSRKQQIKKSTASIQEEKDVANRNIGNIETKAIKDIDLATTNAQVEAIRTKAINDINQTTPSTTAKTETLNEYNEVVQAQIDQAPLNPDSTTEEIQEAIQRINEAKEQGIKAIEATTNSQDLRTTKDNEIAKIENITNSTATKMAAYNEVKQAAAAKKATNGQTTNATDEEVAEASQAVDTAQTEGIKEIQGVKTNQEVADKKTEVINRINAIQPAVRVKPEAETAIENAYNIRKQEIQNSNASTTEEKEAAITQLDAKKQAATTAIDAETSNAGVTTAKENGINEINQIQAETTKKSEAKAAIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVTVANTEIDNAAANTDVDNAKTTNEALIAAITPDANVKPAAKQAITQKVQDQETAIDGNTGATTEEKNAAKQQVQAAKTAAENAIDAAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKATIAQTQDITAEEIEAANADVDNAVTQANNSIEAANSQNDVDQAKTTGEASIDQVTPTVNKKATARNEITTILNNKLQEIQATADATDEEKQAAETEANTENTKATQAVNVATTNAEVDKAKANAEAAINAVTPKVRKKRAALEEIDQLQVTQTQTINNEQNATNEEKEAALQQLTQAVTNAKNNINAATDNNGVDQAKDAGKNAIETTQPATAIKTNAKAEVDQAVNTQTQTIDNEQNATTEEKAAAKSLVDQAKTQAYEDILNAQTTNNVNQVKDQAVNDIQGITADTTIKDTAVQELTDKATEQNRIIDQENDSTTEEKQTATQQVNTALDTAKQNVTNANSIDEVNVAKDAGIESIEKIKPSTDTKNNARADLRTTYQNKVQAFLNDTNSTNEEKQAAIEKPREAFIIGIDGINKAKTNADVATAKMEAETKINQATVNGVKKPAAKNQLTNLADQRKVEIENTPNAQQQEIDAAKQEITDFLNVAQTEIDQANTNNDVDNAVTKATENINAVKTFGELKKDALAQIERAYNAKVTEADNSNTSTSNEIDEAKQKLAELKQQADQNINQTTAKDQLQAQLENGLSSINTYNIPSSKKETVTTELYGYADQKKNNIQADKQGTQNEKVIATNEVDEVVENTLERINNAVNNSDVDDALTQGKLAIDAVQVEAKVKPAAIKAIEDKANETIESINDSENLTKEEKAEALAEIKQIADQSKLDINNSATTTDVTAAKSRGLEAFDNIQIDSTKKQQAIEELENVLDRIEEKVDLNTDATTEEKEAFTNHLEDILSEALEDIYNQTTNDDIDTVKNQTIEKLNAQQFNPEVKKNALKAVEAAVSKQQEKINNTDSNKTAKENALNDLNSIRDRFVEDLTKTQSNAEIAELQNVTIPAIEAIVPQNDSDNNDATANSNANATPENTGQPNVPETTDNGKANASPTTPNTNNDATTGETTPSNNSSTEDANVKPTTNDNSSVDPATNGSATSNNATNNGTTDKPATETDNATPAESTTNNNSTTTATNENATTGSTATAPTKTESTETASSADSKDNASVNDSNQNAEVNNSPESQPTNGKVAQPKSENKAEAEKDDRDSTNQSMVESTTEILPSADITEPKVPSNTSKDKEESTTNQTDAEQHNSDTNVTSNEVDKSPSKADSEVSNKPSTSASSEAKDKMTTINVSQKDDMATADTKDTQTSVGSAANNKAKDMQTNDMKASLATVSNGSNSANQDMLNVTKADENKTNAKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>NZ_CP024998.1|WP_054190820.1|1683368_1684724_-|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAEKFAQQIADVVRDKMGLDK

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Crispr_ID: NZ_CP024998_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_6

1925681-1925763

Orphan

Consensus_repeat	Method
GGGCCCCAACACAGAAGCTGGCGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024998_6

>merge|NZ_CP024998|6|1925681-1925763|CRISPRCasFinder
GGGCCCCAACACAGAAGCTGGCGGCAGATCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGACGGCAG

>NZ_CP024998|6|6|1925681-1925763|CRISPRCasFinder
GGGCCCCAACACAGAAGCTGGCGGCAG	ATCAGCTTACAATAATGTGCAAGTTGGCG
GGGCCCCAACACAGAAGCTGACGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_054189939.1\|1931055_1931418_-\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
NZ_CP024998.1\|WP_054189945.1\|1926884_1927067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054189941.1\|1929913_1930165_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_CP024998.1\|WP_000692645.1\|1914589_1916149_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP024998.1\|WP_000448222.1\|1921105_1921420_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606
NZ_CP024998.1\|WP_000934156.1\|1913351_1914029_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP024998.1\|WP_054189944.1\|1927153_1927621_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|226353
NZ_CP024998.1\|WP_001795300.1\|1914021_1914612_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP024998.1\|WP_054189950.1\|1916138_1919828_-\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP024998.1\|WP_054189942.1\|1929647_1929914_-\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NZ_CP024998.1\|WP_054189943.1\|1927806_1929354_-\|zinc-ABC-transporter-substrate-binding-lipoprotein-AdcA	unknown	unknown	gnl\|CDD\|370371
NZ_CP024998.1\|WP_054189949.1\|1920137_1921115_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|273643
NZ_CP024998.1\|WP_054189937.1\|1933018_1933750_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP024998.1\|WP_054189946.1\|1924852_1925389_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP024998.1\|WP_054189948.1\|1921423_1923829_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP024998.1\|WP_000186933.1\|1912879_1913332_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376570
NZ_CP024998.1\|WP_142241192.1\|1923856_1924624_-\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NZ_CP024998.1\|WP_000594640.1\|1925857_1926682_-\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|225027
NZ_CP024998.1\|WP_054189940.1\|1930437_1931037_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP024998.1\|WP_054189938.1\|1931673_1932924_+\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_054189939.1\|1931055_1931418_-\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	1.52722e-30
NZ_CP024998.1\|WP_054189942.1\|1929647_1929914_-\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	2.5207e-44
NZ_CP024998.1\|WP_054189941.1\|1929913_1930165_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.81826e-20
NZ_CP024998.1\|WP_000692645.1\|1914589_1916149_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP024998.1\|WP_000448222.1\|1921105_1921420_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	3.72601e-50
NZ_CP024998.1\|WP_000934156.1\|1913351_1914029_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	5.77868e-110
NZ_CP024998.1\|WP_054189944.1\|1927153_1927621_-\|glutathione-S-transferase	gnl\|CDD\|226353	COG3832, COG3832, Uncharacterized conserved protein [Function unknown].	1.10132e-32
NZ_CP024998.1\|WP_001795300.1\|1914021_1914612_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	7.56111e-66
NZ_CP024998.1\|WP_054189950.1\|1916138_1919828_-\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP024998.1\|WP_054189943.1\|1927806_1929354_-\|zinc-ABC-transporter-substrate-binding-lipoprotein-AdcA	gnl\|CDD\|370371	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment. ZinT plays a critical role in recruiting periplasmic zinc to the bacterial zinc-uptake complex ZnuABC, consisting of families pfam01297,pfam00950, pfam00005, regulated by the transcription-regulator FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), pfam01297. Members of this family of prokaryotic domains were first identified as part of the response of bacteria to a challenge with the toxic heavy metal cadmium. They are able to bind to cadmium, and ensure its subsequent elimination.	1.34776e-101
NZ_CP024998.1\|WP_054189949.1\|1920137_1921115_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	2.80475e-119
NZ_CP024998.1\|WP_054189937.1\|1933018_1933750_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.48344e-144
NZ_CP024998.1\|WP_054189946.1\|1924852_1925389_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.89933e-08
NZ_CP024998.1\|WP_054189948.1\|1921423_1923829_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP024998.1\|WP_000186933.1\|1912879_1913332_-\|GAF-domain-containing-protein	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	9.51589e-08
NZ_CP024998.1\|WP_142241192.1\|1923856_1924624_-\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	9.56832e-71
NZ_CP024998.1\|WP_000594640.1\|1925857_1926682_-\|formate/nitrite-transporter-family-protein	gnl\|CDD\|225027	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism].	1.8788e-75
NZ_CP024998.1\|WP_054189940.1\|1930437_1931037_-\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	1.22498e-30
NZ_CP024998.1\|WP_054189938.1\|1931673_1932924_+\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0

>NZ_CP024998.1|WP_054189946.1|1924852_1925389_-|GNAT-family-N-acetyltransferase
MTNTTIRLANENDAETLHQLMYKAFTPLRELGIDWPSVNANLDAVKENIDKNTTFVMTIDDEIISTITVRYPWGSVKSISGYPFVWWFATNPEYEGKGYGSQLLTYVEEAFLRDTLKSAAVTLGTSARLHPWLLKIYEKRGYEIYSEHENDDGDLGVIMRKVLIPERFDEKILGQPPF
>NZ_CP024998.1|WP_142241192.1|1923856_1924624_-|sirohydrochlorin-chelatase
MNGNIIVAHGMRRGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLVQSGVDHFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMKRLIEQRICDALEGDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKATYARTLYGEISFIHDLESISKRYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIYITPSINFDPILKQIINDRLESLNDSNENIKAQTKIKTFLK
>NZ_CP024998.1|WP_054189948.1|1921423_1923829_-|NAD(P)/FAD-dependent-oxidoreductase
MAKQKLVMIGNGMAGIRTIEEILERANDLYDITVIGKEPYPNYNRIMLSNILQNKMTVEETIMNPYEWYEENAIELITNDPVIEVDRANQSVTTANGIEVSYDKLIFATGSKAFVIPVPGSTLPSVIGWRTIDDTEQMMNIAKTKKKAIVIGGGLLGLECARGLLDQGMEVTVLHLAEWLMEMQLDRKAGNMLKADLEKQGMKFEMQANTTEILGEDDVEGVKLADGREIPADLVVMAVGIRPYTEVAKESGLDVNRGIVVNDIMQTSDDNVYAVGECAEHNGKVYGLVAPLYEQGKVLADHLTDKETKGYKGSTTFTSLKVSGCDLYSAGQIVENAEIKGIEIFNSVDNNYKKVFLKDGNVVGAVLYGDIDDGSRFYNMMKKGESTEDYTLVSLLTKGGEEATLSIADMADDETICGCNGVDKGTIVNAITENGFTTVEEVTAKTKAGNSCGKCKPQIAQILQHTLGDDFVAAKPAGICGCTDLTRDQIVTQIRAKGLKTSKEVRHVLNFKNKGGCPKCRPAINYYLNMVYPHDHEDERESRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYNVPLVKVTGSQRVGLYGVKKEELPNIWEDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTRLGIRLEKTFEYIDTPHKFKMGVSGCPRSCVESGVKDFGIISVENGFQIYIGGNGGTEVEKAEFLTTVETEDEVIKLCGALMQYYRETGIYAERTAPWLRRLGFENVKEVLLNPERQNELFERIMDAKKAVEAEPWEAITSNAQARKIFEVEKV
>NZ_CP024998.1|WP_000448222.1|1921105_1921420_-|nitrite-reductase-small-subunit-NirD
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYICL
>NZ_CP024998.1|WP_054189949.1|1920137_1921115_-|uroporphyrinogen-III-C-methyltransferase
MSVDEYGKVYLIGAGPGNPNYLTKKAERLIREADVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKVVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATMQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNGGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGRLSNIISKLQHYSIEAKPGICIIGEVVGYTENTPKSYDPTKQFYVVSGSKHDALMLCEHLYDEGYGCLLNPNDTSNGTYHSSQYDYYDAFIKQQENVTYISTDHADANTVLCH
>NZ_CP024998.1|WP_054189950.1|1916138_1919828_-|nitrate-reductase-subunit-alpha
MGKFGLNFFKPTEKFNGNWSILESKSREWEKMYRERWSHDKEVRTTHGVNCTGSCSWKVFVKNGVITWENQQTDYPSCGPDMPEYEPRGCPRGASFSWYEYSPLRIKYPYIRGKLWDLWTEALEENNGNRVAAWASIVENEDKAKQYKQARGMGGHVRSNWKDVTEIIAAQLLYTIKKYGPDRIAGFTPIPAMSMISYAAGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESSDWYNASYIIMWGSNVPLTRTPDAHFMTEVRYKGTKVISVAPDYAENVKFADNWLAPNPGSDAAIAQAMTHVILQEHYVNQPNERFINYAKQYTDMPFLIMLDEDENGYKAGRFLRASDLGQTTEQGEWKPVIHDAISDSLVVPNGTMGQRWEEGKKWNLKLETEDGSKINPTLSMTEGGYELETIQFPYFDSDGDGIFNRPIPTRQVTLANGDKVRIATIFDLMASQYGVRRFDHKLESKGYADAESKYTPAWQEAISGVKQSVVIQVAKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLVMLCGCQGVNGGGWAHYVGQEKCRPIEGWSTVAFAKDWQGPPRLQNGTSWFYFATDQWKYEESNVDRLKSPLAKTEELKHQHPADYNVLAARLGWLPSYPQFNKNSLLFAEEAKDEGIESNEAILQRAIDEVKSKQTQFAIEDPDLKKNHPKSLFIWRSNLISSSAKGQEYFMKHLLGTKSGLLATPNEDEKPEEITWREETTGKLDLVVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFNPAIDPLWESRSDWDIYKTLAKAFSEMAKDYLPGTFKDVVTTPLSHDTKQEISTPYGVVKDWSKGEIEAVPGRTMPNFAIVERDYTKIYDKYVTLGPVLEKGKVGAHGVSFGVSEQYEELKSMLGTWSDTNGDSIKANRPRIDTARNVADAILNISSATNGKLSQKSYEDLEEQTGMPLKDISRERAAEKISFLNITSQPREVIPTAVFPGSNKEGRRYSPFTTNVERLVPFRTLTGRQSYYVDHEVFQQFGESLPVYKPTLPPMVFGNRDKKIKGGTDALVLRYLTPHGKWNIHSMYQDNKHMLTLFRGGPTVWISNEDAEKHDIQDNDWLEVYNRNGVVTARAVISHRMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHFNYYGPIGNQRDLYVAVRKMKEVNWLED
>NZ_CP024998.1|WP_000692645.1|1914589_1916149_-|nitrate-reductase-subunit-beta
MKIKAQVAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGVGYPKRWEDQEHYKGGWVLNRKGKLELKSGSRISKIALGKIFYNPDMPLIKDYYEPWNYNYEHLTTAKSGKHSPVARAYSEITGDNIEIEWGPNWEDDLAGGHVTGPKDPNIQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVHEAASAVDEKDLYEKQLDIFLNPFDEEVIAQAEKDGIGYDWIEAAQNSPIYKLAIEYKLAFPLHPEFRTMPMVWYCPPLSPIMSYFEGKNTTQNPDAIFPAIEEMRLPIEYLANIFTAGDTEPVKGALQRMAMMRSYMRSQVTQQPFDTSRLERLGITERQTKDMYRLLGLAKYEDRFVIPTSHKETYLDTYHAQGSTGYNYGGEHFGDNCEGCGVAVGSGKTGQEIYNENFYGGIFRD
>NZ_CP024998.1|WP_001795300.1|1914021_1914612_-|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MEGFSVINFDNFKKYQESFGYMAQQLCFPEKLTFHPKTFEETISKDHPAYEDLVAFRNVMMTFSLSEIKAIYTDTFDFTKKAPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLEMVDNELSDYLPLMLQFLQVAEWRNDPRAEENIQLIIMIIEDGTYVMANALGEDNNPYAYVIQALRKTLKLCLTSPKGVKHHA
>NZ_CP024998.1|WP_000934156.1|1913351_1914029_-|respiratory-nitrate-reductase-subunit-gamma
MLNQFLWVIFPYLCLVVFVAGHIARYRYDKFSWTAKSSELIERKRLMWGSLLFHLGIIPVFFGHVVGLLIPKSWMDAVGVSEHLYHIGAVYIGSIFGIITLVGMFLLTARRVTTKSIRRLSSASDIFVNFLLLLIVFMGCYATLVTNIQHPDFNYRTSLSIWFRQLFMLKPDASLMSGVPIAFKMHILLGFTIMACWPFTRLVHVWSVPLTYINRRYIIYRKNKV
>NZ_CP024998.1|WP_000186933.1|1912879_1913332_-|GAF-domain-containing-protein
MTPEAIIEDRRFQETLDKIRKEEGYDFAAIAFYESNKPSSPIKWHYVSGNKNNRFKLIILRKGRGLAGTVMKTGKRMVIANVGLALGPEEKIDYPILLSESLTAVLAVPLWYKNQVYGVLLFGQRDGRPLPKIFDNDDIQRKFGIFNDDK
>NZ_CP024998.1|WP_000594640.1|1925857_1926682_-|formate/nitrite-transporter-family-protein
MIKNNKTVEDTYSTKAIVDSISSSVQMKQVMVQQTPGRYMLKSMMAGFLLSIVTVFMFGIKTQFASTHVDGLINLMGAIAFSLGLVLVVLTNSELLTSNFMYFTVGWYYKVVSLNKMMWILLYCFLGNILGGFVLFFLMKYAHVMTPEMTQALTALVQKKTVDSTWLNIFTKGIFCNFFINIGIFISMQFKGGLTKAFFIACGVIVFVYMGYEHVVFNAGLYAGMVFFNLDAVSWLHVLKNIVFAFLGNFVGGGIFVGLVYAFLNGKRNRLEQQ
>NZ_CP024998.1|WP_054189945.1|1926884_1927067_-|hypothetical-protein
MAQRYIKVLILYIFTTLLSSITVTSKCVPNKVVRFILRTLVGYGIFAYGLHYFSNLKKNK
>NZ_CP024998.1|WP_054189944.1|1927153_1927621_-|glutathione-S-transferase
MTIKVEDNKIIFSRTIEAPIEKVFDAYTTKVLFEKWFHPKDASTKVFRFNAVSGGDAFYAIKTPTMTSYTLAEYKTVKRPYLIEYIDSFATPQGAKDTKMPSMKITLSFSEFDTTKTTVTSTSVFPTKEAAQQVINMGVEQGMNQTLDQLDALLK
>NZ_CP024998.1|WP_054189943.1|1927806_1929354_-|zinc-ABC-transporter-substrate-binding-lipoprotein-AdcA
MKKKLGMLLLVPAVTLSLAACGNDDGKDKDGKVTIKTTVYPLQSFAEQIGGKHVKVSSIYPAGTDLHSYEPTQKDILSASKSDLFMYTGDNLDPVAKKVASTIKDKDKKLSLEDKLDKAKLLTDQHEHGEEHEHEGHNHEKEEHHHHGGYDPHVWLDPKINQTFAKEIKDELVKKDPKHKDDYEKNYKKLNDDLKKIDNDMKQVTKDKQGNAVFISHESIGYLADRYGFVQKGIQNMNAEDPSQKELTKIVKEIRDSNAKYILYEDNVANKVTETIRKETDAKPLKFYNMESLNKEQQKKDNITYQSLMKSNIENIGKALDSGVKVKDDKAESKHDKAISDGYFKDEQVKDRELSDYAGEWQSVYPYLKDGTLDEVMEHKAENDPKKSAKDLKAYYDKGYKTNITNIDIKGNEITFTKDGKKHTGKYEYNGKKTLKYPKGNRGVRFMFKLVDGNDKDLPKFIQFSDHNIAPKKAEHFHIFMGNDNDALLKEMDNWPTYYPSKLNKDQIKEEMLAH
>NZ_CP024998.1|WP_054189942.1|1929647_1929914_-|Txe/YoeB-family-addiction-module-toxin
MARLNITFSPQAFEDYKYFQQNDKKMALKINELLKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIKIASCKYHY
>NZ_CP024998.1|WP_054189941.1|1929913_1930165_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTIMKDIDV
>NZ_CP024998.1|WP_054189940.1|1930437_1931037_-|DsbA-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSTKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTEELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
>NZ_CP024998.1|WP_054189939.1|1931055_1931418_-|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIIIAYKPLSNDDEVHYYAYDFSDKRVSYKKDFDSRRYYQQHDADYHEENMTN
>NZ_CP024998.1|WP_054189938.1|1931673_1932924_+|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTIKNFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETPTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALKESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSNSSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPLLYKVKTHLNHKRR
>NZ_CP024998.1|WP_054189937.1|1933018_1933750_-|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEAREKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPNVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVINEE

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Crispr_ID: NZ_CP024998_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024998_7

2196169-2196420

Orphan

Consensus_repeat	Method
NNACTNANNGATTCTGAT	CRT

5 spacers

The CRISPR arrays of NZ_CP024998_7

>merge|NZ_CP024998|7|2196169-2196420|CRT
GTACTCAGCGATTCGGATACGCTTGTTGAACCTGAATTAGACGTACTTAATGATTCTGATGTGCTTGTTGAACCTGAATTAGACGTACTTAATGATTCTGATGTGCTTGTTGAAGTTGAACCACTTGTTAAGCCAGATGTACTCAATGATTCTGAGTCACTGATAGAAGTTGAATCGCTTGTAGATTCTGATTCTACTGAACTTTGTGAACCACTGATACTTATTGAAGTCGAATCACTTATACTGTCTGAT

>NZ_CP024998|7|1|2196169-2196420|CRT
GTACTCAGCGATTCGGAT	ACGCTTGTTGAACCTGAATTAGAC
GTACTTAATGATTCTGAT	GTGCTTGTTGAACCTGAATTAGAC
GTACTTAATGATTCTGAT	GTGCTTGTTGAAGTTGAACCACTTGTTAAGCCAGAT
GTACTCAATGATTCTGAG	TCACTGATAGAAGTTGAA
TCGCTTGTAGATTCTGAT	TCTACTGAACTTTGTGAACCACTGATACTTATTGAAGTCGAA
TCACTTATACTGTCTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024998.1\|WP_054189749.1\|2209229_2209706_-\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|235497
NZ_CP024998.1\|WP_100793844.1\|2182838_2184734_-\|cell-wall-anchored-protein-SasF	unknown	unknown	unknown
NZ_CP024998.1\|WP_054189747.1\|2208095_2208455_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_000088195.1\|2182109_2182670_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NZ_CP024998.1\|WP_054189751.1\|2210583_2211351_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP024998.1\|WP_054189740.1\|2191169_2192738_-\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|274739
NZ_CP024998.1\|WP_054189737.1\|2186326_2187835_-\|accessory-Sec-system-glycosyltransferase-GtfA	unknown	unknown	gnl\|CDD\|131964
NZ_CP024998.1\|WP_054189736.1\|2184975_2186334_-\|accessory-Sec-system-glycosylation-chaperone-GtfB	unknown	unknown	gnl\|CDD\|274351
NZ_CP024998.1\|WP_054189742.1\|2194291_2195503_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	unknown	unknown	gnl\|CDD\|237095
NZ_CP024998.1\|WP_054189741.1\|2192727_2194281_-\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|274740
NZ_CP024998.1\|WP_054189753.1\|2212056_2212719_-\|capsule-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|226453
NZ_CP024998.1\|WP_054189738.1\|2187852_2190243_-\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|163426
NZ_CP024998.1\|WP_054189748.1\|2208539_2209151_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP024998.1\|WP_054189739.1\|2190232_2191192_-\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|163423
NZ_CP024998.1\|WP_054189752.1\|2211347_2212040_-\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP024998.1\|WP_054191864.1\|2204923_2205868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024998.1\|WP_054189734.1\|2179995_2181855_+\|amidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236304
NZ_CP024998.1\|WP_054189750.1\|2209708_2210209_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP024998.1\|WP_054189744.1\|2202859_2203552_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP024998.1\|WP_100793865.1\|2207662_2207947_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP024998.1\|WP_054189749.1\|2209229_2209706_-\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	1.35496e-104
NZ_CP024998.1\|WP_000088195.1\|2182109_2182670_-\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	5.62235e-42
NZ_CP024998.1\|WP_054189751.1\|2210583_2211351_-\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.19973e-143
NZ_CP024998.1\|WP_054189740.1\|2191169_2192738_-\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|274739	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP024998.1\|WP_054189737.1\|2186326_2187835_-\|accessory-Sec-system-glycosyltransferase-GtfA	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	0
NZ_CP024998.1\|WP_054189736.1\|2184975_2186334_-\|accessory-Sec-system-glycosylation-chaperone-GtfB	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	0
NZ_CP024998.1\|WP_054189742.1\|2194291_2195503_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	9.28329e-174
NZ_CP024998.1\|WP_054189741.1\|2192727_2194281_-\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|274740	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP024998.1\|WP_054189753.1\|2212056_2212719_-\|capsule-biosynthesis-protein-CapA	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	2.09502e-89
NZ_CP024998.1\|WP_054189738.1\|2187852_2190243_-\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|163426	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP024998.1\|WP_054189748.1\|2208539_2209151_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	4.15123e-45
NZ_CP024998.1\|WP_054189739.1\|2190232_2191192_-\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|163423	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.4564e-65
NZ_CP024998.1\|WP_054189752.1\|2211347_2212040_-\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	8.05613e-84
NZ_CP024998.1\|WP_054189734.1\|2179995_2181855_+\|amidase-domain-containing-protein	gnl\|CDD\|236304	PRK08581, PRK08581, amidase domain-containing protein.	0
NZ_CP024998.1\|WP_054189750.1\|2209708_2210209_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.78721e-14
NZ_CP024998.1\|WP_054189744.1\|2202859_2203552_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.05549e-41

>NZ_CP024998.1|WP_054189742.1|2194291_2195503_-|accessory-Sec-system-protein-translocase-subunit-SecY2
MLKLLQQYEYKIIYKRILYTCFILFIYILGTNISIVSYNDMQVKHESFFKIAISNMGGDVNTLNIFTLGLGPWLTSMIILMLISYRNMDKYMKQTSLEKHYKERTLTLILSVIQSYFVIHEYVSKERVHQDNIYLTILILVAGTMLLVWLADKNSRYGIAGPMPIVMVSIIKSMMHQKMEYVDASHIVIALLIILVIITLFILLFIELVEVRIPYIDLMNVSATNMKSYLSWKVNPAGSITLMMSISAFVLLKSGIHFILSIFNKSISDDMPMLTFDSPVGISVYLVIQMLLGYFLSRFLINTKQKSKDFLKSGNYFSGVKPGKDTERYLNYQARCVCWFGSALVTVIIGIPLYCTLLVPHLSTEIYFSVQLIVLIYISINIAETIRTYLYFDKYTSFLNQYW
>NZ_CP024998.1|WP_054189741.1|2192727_2194281_-|accessory-Sec-system-protein-Asp1
MKYFIPAWYDDQQWWQDTTVPYYQMQKKTEFDDMISLMGMHLENELDYHLIVLNHAPNIRTFLHRYDLYETKYWSVFDEIQGFSHHAPQAINYHLLKWPDDVEFVYTPYLLKCVTSEQAYTNIYFSQEGYSIWFEEFERDQLQRRYIFDDRGYLSAIRYFDKDGEASYQEYLTIDGDCVLCEDLKGGRVSVSKRYQHDYRQKQYNSMAEIIEEKFQEMITRTIHSEDHVIVASDARHNQFIAKNIPAKSLSYSFFKNRNETVSDEEYASIVEHARLIVDSVQLERELLTHQDHHQRQNSMIRITPFETRQSPNISSQLMETFIGVWIDGMSDADLQQMMQRLVDYITQEDYYRLILLTRHQNDIPMWLRECITSVNEEYQSKQNADVNVSALMTPEDQDDIIAVKTIHAEHDVVEALRTLRLVIDMSKEPDLYLQISAISAGIPQINGQQTDYVSDYDNGRIINTVDELEDALNYYLFYLKNWNYAYAYSLKLIDAYASKNIINQLDELIEGENNAT
>NZ_CP024998.1|WP_054189740.1|2191169_2192738_-|accessory-Sec-system-protein-Asp2
MPRKFRVLQIGGDDLEPIFQHKKGVSWDYFDIGLFEFDSGYVEAIEAIVEAEGRFDFIYIQAPYSKTLTNLLQMISEPYNTYVDESFWSVEYEQDENVQKYVVQPLHYRNIEERNNKLEAVSFSGQYGDKVSPKLALVHPNFKGDVVYQGNSELTLSGEFGKEFKPIASWQNNLVYDKDKVIQIWPEFDIDGSVELQYTFRLIQTGADGALIEQIVLTDDMLDSPLEIPTKPFDAYISVTVKARGNGTVHLGPIHKRWSRLDMGQFLLGGSRFVDSQRQEFIYYFHPGDMKPPLNVYFSGYRTAEGFEGYYMMKRMNAPFLLIGDPRVEGGSFYIGSSEYEQGIINVIEETLEKLNFKSHELILSGLSMGSFGALYYGAQLNPQAIIVGKPLVNIGTIAEHMRLLRPEEFGTALDVLVSNEGDTSQASIQALNQKFWKTFQKKSLSQTVFAIAYMQHDDYDSHAFQELLPVLTAHQARVMNRSIPGRHNDDSPTIASWFVNFYNIILEDKFGRVQHAEKQNI
>NZ_CP024998.1|WP_054189739.1|2190232_2191192_-|accessory-Sec-system-protein-Asp3
MLKNKTFKVTWNYISQTTFMYGSKVSFSNGEVTFINPLMPSGLPIHEWLMLKQFSKYKSAPSLPILRRGQHYKLHFDFDVTPAGSVYFIIIFYNKNGTKLSTEIVKSNSITIQYPDEAYAYRIKMMNAASTSLIFRCLTITEMTHQDDLEYKGMQVTKMGDDQYGNDKINVIIAEPSDAYPTISNDFLKPFGHVWLVERWMDDNIEENIKQLKDDLQSQDTLTAINLISYGSKSNVFATYVAQHLDCKVYRTSHEDDDLKDWLKEHVPGNHELKDTNVEVYFKEEQDNHLNYMSRLMNPVRFLDYLDVSKLNGGEVNET
>NZ_CP024998.1|WP_054189738.1|2187852_2190243_-|accessory-Sec-system-translocase-SecA2
MKHKLDVTINELRLKSIRKIVKRINTWSDEIKSYSDDALKQKTIEFKERLASGVDTLDTLLPEAYAVAREASWRVLGMYPKEVQLIGAIVLHEGNIAEMQTGEGKTLTATMPLYLNALSGKGTYLITTNDYLAKRDFEEMQPLYEWLGLTASLGFVDIVDYEYQKGEKRNIYEHDIIYTTNGRLGFDYLIDNLADSAEGKFLPQLNYGIIDEVDSIILDAAQTPLVVSGAPRLQSNLFHIVKEFVDTLIEDVHFKMKKTKKEIWLLNHGIEAAQSYFNVEDLYSEQAMVLVRNINLALRAQYLFESNVDYFVYNGDIVLIDRITGRMLPGTKLQAGLHQAIEAKEGMEVSTDKSVMATITFQNLFKLFESFSGMTATGKLGESEFFDLYSKIVVQVPTDKAIQRIDEPDKVFRSVDEKNIAMIHDIVELHETGRPVLLITRTAEAAEYFSKVLFQMDIPNNLLIAQNVAKEAQMIAEAGQIGSMTVATSMAGRGTDIKLGEGVEALGGLAVIIHEHMENSRVDRQLRGRSGRQGDPGSSCIYISLDDYLVKRWSDSNLAENNQLYSLDAQRLSQSSLFNRKVKQIVVKAQRISEEQGVKAREMANEFEKSISIQRDLVYEERNRVLEIDDAENRDFKTLAKDVFEMFVNEEKVLTKSRVVEYIYQNLSFQFNKDVACVNFKDKQAVVTFLLEQFEKQVALNHKNMQSAYYYNIFVQKVLLKAIDSCWLEQVDYLQQLKASVNQRQNGQRNAIFEYHRVALDSFEVMTRNIKKRMVKNICQSIITFDKEGIPVIHFP
>NZ_CP024998.1|WP_054189737.1|2186326_2187835_-|accessory-Sec-system-glycosyltransferase-GtfA
MTIYNINFGIGWASSGVEYAQAYRAKLLRHTNQDTKFVFLDFIQSENIQTLTQNIGFEDQEVIWLYQYFSDISIAPTTYTLDDIERELGHDISFRERNGKIARLYFNGKSSFVTCYLQNEQKDIVDRAEFVINSMLVRKDFYSYTRIFSEYYAPADNKAKLYMRQFYNEDGSIAYNEYIDGDSSIYVFEDAVLYNKTEFIAYFLQRLNLTRDDIVILDRASDIGQAVLQHKGDSKVGVVIHADHYSNNMMSEQHILWNNYYEYQFSKAKYIDFFITATDIQNHMVCRQFEQYQGYHPRVYTIPVGSIDALSYPTLSRKPYAMISASRLANEKHIDWLVKAVIVAKRQVPELTFDIYGEGSEKTRLRKIIDTHRAQDYIRLLGHVKLDEIYTDYELFLSASTSEGFGLTLMEAVGSGLGMIGLNVNYGNPTFIRDGENGYLVPFDTDEDSVNDVVAKLAHAIVMYFNNGPQTPHDISYEVAQQFMTQDIILKWETLVQEVLHD
>NZ_CP024998.1|WP_054189736.1|2184975_2186334_-|accessory-Sec-system-glycosylation-chaperone-GtfB
MIKLFDYFNDHSRKLYESFKASKLEEDLTIVLNDNGFLPDDVISPYQFFADNHNSENMKPRFFNQVTVPAFWEIKGNNNSATINDMGRLRGKIFYQSGERPRIVSRVEWFDDQQRVRFVDYYSKNGIKFAQTVYDLNRKAILKKYMTAEGKEVIYENFVTSDVILDWQGKSYFFPSKLAFVLFFIKQLEITEHHFVINSLALPFSVLYNLPSNGSDVLVWQEQCDGNVPGNMQLMCKGDMKRHCNIIIPDKNEYETMLNIADAKVQSRILQGGYLYNYRSRNKYTKEIVILTNSDQLRNIKVLVETLPDFKFHIAAITEMSDKLMQLDQYANVHLYPSINIDRVNELYQLCDIYLDINEGNEILNAVEQAFDYELLILGYRQTAHHAKVTLSEHLFEHNDEITMESKDQLIQMLESLKDQQQFRDALLAQKAHAHEISREQFEQVFKHALES
>NZ_CP024998.1|WP_100793844.1|2182838_2184734_-|cell-wall-anchored-protein-SasF
MAKYRGKPFQLYVKLSCSTMMATSIILTNILPYDAQAASEKDTEISKEILSKQDLLDKVDKANLQIEQLKQLSASSKAHYKAQLNDAKTASQIDEIIKRANELDSKDNKGSQIEMNGQSDIDSKLDQLLKDLDEVSSKVDKGQQSGEDNLNAMKNDMSQTATTKHGEKDNKNDEAMVDKALEDLDHLNQQIHKAKDASKDSAVSTTDNNHEVAKTPNNDRSGHVVLNKFLSNEENQSHGNRLTDKLQGSDKINHAMIEKLAKSNASTQHYTYHKLNTLQSLDQRIANTQLPKNQKSDLMSEVNKTKERIKSQRNIILEELARTDDKKYATQSILESIFNKDEADKILKDIRVDGKTDQQIADQITRHIDQLSLTTSDDLLTSLIDQSQDKSMLISQILQTKLGKAEADKLAKDWTNKGLSNRQVVDQLKKHFASTGDTSSDDILKAILNNAKDKKQAIETILATRIERQKAKLLADLITKIETDQNKIFNLVKSALNGKADDLLNLQKRLTQTKKDIDYILSPIVNRPSLLDRLNKNGKTTDLNKLANLMNQGSNLLDSIPDIPTPKPEKTLTLGKGNGLLSGLLNADGNVSLPKAGETIKEHWLPISVIVGAMGVLMIWLSRRNKLKNKA
>NZ_CP024998.1|WP_000088195.1|2182109_2182670_-|cysteine-hydrolase
MSRKTALLVLDMQEGIASSVPRIKNIIKANQRAIEAARQHRIPVIFIRLVLDKHFNDVSSSNKVFSTIKAQGYAITEADASTRILEDLAPLEDEPIISKRRFSAFTGSYLEVYLRANDINHLVLTGVSTSGAVLSTALESVDKDYYITVLEDAVGDRSDDKHDFIIEQILSRSCDIESVESWKSSL
>NZ_CP024998.1|WP_054189734.1|2179995_2181855_+|amidase-domain-containing-protein
MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKTIDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFKLNSDISDYEQPRNGEKSTNDSNKNSDNSIKNDTDTQSTKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDTRQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEGNSVPFNTLEADGNQLYSINAGFRKYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLDKYERSIKDYDDSSDEFKPFREVSDNMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSHTPKRHAAVVFEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINAAAAEELSYITGK
>NZ_CP024998.1|WP_054189744.1|2202859_2203552_-|flavin-reductase-family-protein
MNYSPKQGVRSHGLPHDPFKSSTVPRPIGWISTVSKDGKDNLAPYSQYQNLTWDPPMVMFASNQSVLGDHERKDTVKNAEETGWFVWNMATYDLREAVNLSSKALPPEEDEFEYAGVTKEACIEAPGYRVKESPVHFECEYVQTIRIPTGDPVSTVDIVIGRVAQVHIDDKVILDNGKLDIKSIKPIARLGYYDYTVVNEIFEMKAPSASKEELAGLEGRNFDNQSDGKK
>NZ_CP024998.1|WP_054191864.1|2204923_2205868_+|hypothetical-protein
MRKVTGFVLCTSLILGGCSLMHKDQTKDIPKTVSVKDYDGQYIGEHKKRNEVFLKKHKDEAIKKYKNYVKDTFGYDCKINLVKPYTNSSGFSEKSKTDGLVVVGTVNYDVPFQLRLIFVESDNSVTITTFTPGHENETSAAISAMMYKRYEHEIEQARLKFKSEVEKNGYFAMNEKLQIKQEYNGVVRKYLNFKTPGIEGMDKFKKEFKPLMNTSNSDFNQKFDALLMKHPEIKDQAKTNFIAYYSKNKTRDIVGDYVVALQKPTNKVMKNYPGIKFMKFYKDSVSPSQLDKNGRLKPEVEEVSTIGGEYNENK
>NZ_CP024998.1|WP_100793865.1|2207662_2207947_+|hypothetical-protein
MRLILSELIFTEYVIVEMQDFFKNALLSDSLLRDIKVLSANAKGDADMLETELHAVINAMSQNEGKSVDALKNSTASLKNNLTKLKEQLDKTTH
>NZ_CP024998.1|WP_054189747.1|2208095_2208455_+|hypothetical-protein
MILRYVTNLKLAKELYQASKPKLQEDKGMIELFEHTFGLQKELVKYVGIAEATTAALYSASFINKNISRLASLSTIGILSVAVYKHFEAGHGKKGAQHALDLLGLATLSLLDTFSCNKK
>NZ_CP024998.1|WP_054189748.1|2208539_2209151_-|flavin-reductase-family-protein
MYTFDAQSLTARENYKLLIGSIIPRPIAFVTTLNQDASVNAAPFSFFNIVNNHPPMIAIAVQRAGGKRKDTALNIERTGDFVVHITDEDNVQDINETAAPLAYGDSELIRTELSLVTSTTIKTPGIKDAKMRFECKLSQMILLGDALDGADLIIGEIVTYHIDDSIYEGDFKINPHALQAVSRLAGNDYAKLGGTFTIKRPEK
>NZ_CP024998.1|WP_054189749.1|2209229_2209706_-|peptide-methionine-(S)-S-oxide-reductase
MAVVYVAGGCLWGVEAFFTTIPGIIHTEAGRANGRSSKLDSSYDGYAECVKLHFDDRMLTITDIMNYLFEIIDPYSVNRQENDIGEKYRTGLYSCVDDHLIEARQFIERRKDRDQIAVEVLPLSNYIKSADEHQQHLEKYPEDMHMCHISKDLLNKYK
>NZ_CP024998.1|WP_054189750.1|2209708_2210209_-|GNAT-family-N-acetyltransferase
MVLRKVNMQDLDQIIALENIGFTTEEAATAEALKSRIVQIQETFIVAEHNGKVIGYINGPVIKERYISDDLFKNVPTNNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFENLAKNQHRHGVTLTCRESLISFYEKYGYRNEGLSESCHGDIKWYNLVKNIKKDDEV
>NZ_CP024998.1|WP_054189751.1|2210583_2211351_-|tyrosine-protein-phosphatase
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDSTFQQVLVKLAELRTHPEVQALDIKLFPGQEIRITDSILQGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLDRPTKPGKVKSFLKWF
>NZ_CP024998.1|WP_054189752.1|2211347_2212040_-|polysaccharide-biosynthesis-tyrosine-autokinase
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATSAKLLGVVLNRMPKDKSASYYAYYGTDES
>NZ_CP024998.1|WP_054189753.1|2212056_2212719_-|capsule-biosynthesis-protein-CapA
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNRISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIISVNIVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	224648-224675	0	1.0
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	265575-265602	0	1.0
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	387648-387675	0	1.0
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	1102502-1102529	1	0.964
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	1102557-1102584	1	0.964
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	2171440-2171467	1	0.964
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	1434687-1434713	1	0.963
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	1475944-1475971	2	0.929
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	1476115-1476142	2	0.929
NZ_CP024998_1	1.1\|234138\|28\|NZ_CP024998\|CRISPRCasFinder	234138-234165	28	NZ_CP024998.1	2530984-2531011	2	0.929
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	1102585-1102611	2	0.926
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	1476201-1476227	2	0.926
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	1476259-1476285	2	0.926
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	2428525-2428551	2	0.926
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	2609948-2609974	2	0.926
NZ_CP024998_4	4.1\|1487149\|27\|NZ_CP024998\|CRISPRCasFinder	1487149-1487175	27	NZ_CP024998.1	2610004-2610030	2	0.926
NZ_CP024998_7	7.4\|2196325\|18\|NZ_CP024998\|CRT	2196325-2196342	18	NZ_CP024998.1	1586003-1586020	2	0.889

1. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 224648-224675, mismatch: 0, identity: 1.0

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacacagagaatttcgaaa	Protospacer
****************************

2. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 265575-265602, mismatch: 0, identity: 1.0

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacacagagaatttcgaaa	Protospacer
****************************

3. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 387648-387675, mismatch: 0, identity: 1.0

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacacagagaatttcgaaa	Protospacer
****************************

4. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 1102502-1102529, mismatch: 1, identity: 0.964

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacacagagaatttcaaaa	Protospacer
************************.***

5. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 1102557-1102584, mismatch: 1, identity: 0.964

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacacagagaatttcaaaa	Protospacer
************************.***

6. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 2171440-2171467, mismatch: 1, identity: 0.964

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacatagagaatttcgaaa	Protospacer
*************.**************

7. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 1434687-1434713, mismatch: 1, identity: 0.963

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttacattgtttgtagaaattgg	Protospacer
*************.*************

8. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 1475944-1475971, mismatch: 2, identity: 0.929

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaacatagagaatttcaaaa	Protospacer
*************.**********.***

9. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 1476115-1476142, mismatch: 2, identity: 0.929

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggacccaacacagagaatttcaaaa	Protospacer
***** ******************.***

10. spacer 1.1|234138|28|NZ_CP024998|CRISPRCasFinder matches to position: 2530984-2531011, mismatch: 2, identity: 0.929

cggggccccaacacagagaatttcgaaa	CRISPR spacer
cggggccccaatacagagaaattcgaaa	Protospacer
***********.******** *******

11. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 1102585-1102611, mismatch: 2, identity: 0.926

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttgcattgtttgtagaaattgg	Protospacer
*******.*****.*************

12. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 1476201-1476227, mismatch: 2, identity: 0.926

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttgcattgcctgtagaaattgg	Protospacer
*******.******.************

13. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 1476259-1476285, mismatch: 2, identity: 0.926

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttgcattgcctgtagaaattgg	Protospacer
*******.******.************

14. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 2428525-2428551, mismatch: 2, identity: 0.926

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttgcattgtttgtagaaattgg	Protospacer
*******.*****.*************

15. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 2609948-2609974, mismatch: 2, identity: 0.926

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttgcattgcttgttgaaattgg	Protospacer
*******.********** ********

16. spacer 4.1|1487149|27|NZ_CP024998|CRISPRCasFinder matches to position: 2610004-2610030, mismatch: 2, identity: 0.926

ccaacttacattgcttgtagaaattgg	CRISPR spacer
ccaacttgcattgcttgttgaaattgg	Protospacer
*******.********** ********

17. spacer 7.4|2196325|18|NZ_CP024998|CRT matches to position: 1586003-1586020, mismatch: 2, identity: 0.889

tcactgatagaagttgaa	CRISPR spacer
tcactgattgaaggtgaa	Protospacer
******** **** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP016461	Blastomonas sp. RAC04 plasmid pBSY18_4, complete sequence	14338-14364	4	0.852
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	343070-343096	5	0.815
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP044300	Escherichia coli strain P59A plasmid pP59A-2, complete sequence	114282-114308	5	0.815
NZ_CP024998_7	7.2\|2196229\|24\|NZ_CP024998\|CRT	2196229-2196252	24	NZ_CP035089	Pseudomonas sp. 11K1 plasmid p11K1, complete sequence	20882-20905	5	0.792
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	24508-24534	6	0.778
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	135824-135850	6	0.778
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	186855-186881	6	0.778
NZ_CP024998_2	2.1\|453336\|27\|NZ_CP024998\|CRISPRCasFinder	453336-453362	27	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	78487-78513	6	0.778

1. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP016461 (Blastomonas sp. RAC04 plasmid pBSY18_4, complete sequence) position: , mismatch: 4, identity: 0.852

cagaagctggcggaaagtcagcataaa	CRISPR spacer
gaaaagctagcggacagtcagcataaa	Protospacer
 *.*****.***** ************

2. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.815

cagaagctggcggaaagtcagcataaa	CRISPR spacer
cagacgctggcggaaaggcagcaaatg	Protospacer
**** ************ ***** * .

3. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP044300 (Escherichia coli strain P59A plasmid pP59A-2, complete sequence) position: , mismatch: 5, identity: 0.815

cagaagctggcggaaagtcagcataaa	CRISPR spacer
aagaagctggcggaacttcagcattag	Protospacer
 **************  ******* *.

4. spacer 7.2|2196229|24|NZ_CP024998|CRT matches to NZ_CP035089 (Pseudomonas sp. 11K1 plasmid p11K1, complete sequence) position: , mismatch: 5, identity: 0.792

gtgcttgttgaacctgaattagac	CRISPR spacer
ttgcttgttgaacctgaatttatg	Protospacer
 ******************* .

5. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 6, identity: 0.778

cagaagctggcggaaagtcagcataaa	CRISPR spacer
gagaagctggcggaaagtcaggtctag	Protospacer
 ********************  . *.

6. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

cagaagctggcggaaagtcagcataaa	CRISPR spacer
gagaagctggcggaaagtcaggtctag	Protospacer
 ********************  . *.

7. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.778

cagaagctggcggaaagtcagcataaa	CRISPR spacer
gagaagctggcggaaagtcaggtctag	Protospacer
 ********************  . *.

8. spacer 2.1|453336|27|NZ_CP024998|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.778

cagaagctggcggaaagtcagcataaa	CRISPR spacer
gagaagctggcggaaagtcaggtctag	Protospacer
 ********************  . *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

202984 : 210804

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054189238.1\|202984_204040_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.2e-14	30.2
WP_000149344.1\|204039_204726_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|204700_205174_-	DoxX family protein	NA	NA	NA	NA
WP_001093556.1\|205515_205956_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_054189239.1\|206235_206820_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|206918_207632_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|207635_208055_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_054189240.1\|208056_208725_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.3e-65	57.5
WP_054189241.1\|209075_209669_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.5e-38	42.9
WP_054189242.1\|209652_210804_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	1.6e-23	36.1

DBSCAN-SWA_2

222774 : 237217

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054189251.1\|222774_223833_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.4e-21	26.4
WP_000197261.1\|223990_224533_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_054189252.1\|225083_226001_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.4
WP_054189253.1\|226282_227788_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.8e-59	32.4
WP_054189254.1\|228128_228629_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_054189255.1\|228648_229515_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|230315_230714_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_054189256.1\|230676_232782_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
WP_000562498.1\|232899_233871_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000876318.1\|234544_235516_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245577.1\|235502_236459_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_054189257.1\|236455_237217_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	29.6

DBSCAN-SWA_3

395354 : 451537

Streptococcus_phage(33.33%)

transposase,tRNA,protease,holin,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054190390.1\|395354_396671_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	6.4e-45	33.1
WP_000682089.1\|396870_397056_-	YjzD family protein	NA	NA	NA	NA
WP_054190375.1\|397350_398292_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_054190374.1\|398303_399548_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_054190373.1\|399602_399974_-	DUF3899 domain-containing protein	NA	NA	NA	NA
WP_054190372.1\|400216_401143_+	ABC transporter permease	NA	NA	NA	NA
WP_000829639.1\|401142_402213_+	ABC transporter permease	NA	NA	NA	NA
WP_054190371.1\|402228_403311_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-18	30.1
WP_054190370.1\|403300_404242_+	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	2.1e-05	26.4
WP_054190369.1\|404260_405916_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_054190368.1\|406125_407841_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_054190367.1\|407891_408878_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.1e-15	28.8
WP_054190366.1\|408880_409861_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-16	34.1
WP_054190365.1\|409853_410816_+	ABC transporter permease	NA	NA	NA	NA
WP_001180264.1\|410827_411709_+	ABC transporter permease	NA	NA	NA	NA
WP_054190364.1\|411796_412786_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_000258003.1\|413080_413476_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_054190363.1\|413846_414566_+	adaptor protein MecA	NA	NA	NA	NA
WP_054190362.1\|414686_415673_+	competence protein CoiA	NA	NA	NA	NA
WP_000082725.1\|415720_417529_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	5.5e-47	24.5
WP_054190361.1\|417988_418795_-	DsbA family protein	NA	NA	NA	NA
WP_000214067.1\|418817_419183_-	hypothetical protein	NA	NA	NA	NA
WP_054190360.1\|419286_419880_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_054190359.1\|420065_420413_+	hypothetical protein	NA	NA	NA	NA
WP_001077683.1\|420429_421065_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_001270834.1\|421081_421891_+	NAD kinase	NA	NA	NA	NA
WP_054190358.1\|421887_422742_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_054190357.1\|422762_424148_+	magnesium transporter	NA	NA	NA	NA
WP_054190356.1\|424157_426002_+	sodium:proton antiporter	NA	NA	NA	NA
WP_000933200.1\|426277_427048_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_000933103.1\|427232_428318_-	AI-2E family transporter	NA	NA	NA	NA
WP_054190355.1\|428659_430228_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_054190354.1\|430372_431131_+	esterase family protein	NA	NA	NA	NA
WP_000600387.1\|431324_431834_+	hypothetical protein	NA	NA	NA	NA
WP_077446586.1\|431946_433155_-	MFS transporter	NA	NA	NA	NA
WP_054190352.1\|433114_434290_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_054190351.1\|434722_436207_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_077446587.1\|436187_436448_+	hypothetical protein	NA	NA	NA	NA
WP_001049957.1\|436447_438010_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2
WP_000928413.1\|438311_439115_+	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_077446588.1\|439339_441652_+\|protease	serine protease	W5SAB9	Pithovirus	2.8e-11	27.8
WP_054190348.1\|441668_443027_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_054190347.1\|443165_444677_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_000287265.1\|445165_445735_-	competence protein ComK	NA	NA	NA	NA
WP_000876826.1\|445944_446163_+	IDEAL domain-containing protein	NA	NA	NA	NA
WP_054190346.1\|446251_447238_-	lipoate--protein ligase	NA	NA	NA	NA
WP_000214898.1\|447436_447613_+	YkvS family protein	NA	NA	NA	NA
WP_001033867.1\|447627_448230_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_099119695.1\|448529_448607_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_054190345.1\|449244_449529_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_054190344.1\|449572_451537_+\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA

DBSCAN-SWA_4

483750 : 492223

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054190322.1\|483750_484233_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.6e-22	44.7
WP_054190321.1\|484219_485344_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_054190320.1\|485347_486052_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	3.3e-48	42.5
WP_054190319.1\|486051_486315_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_054190318.1\|486316_486988_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_054190317.1\|486980_489170_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.1e-140	39.7
WP_054190316.1\|489148_490633_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
WP_000030811.1\|490625_491654_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
WP_000238670.1\|491656_492223_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1

DBSCAN-SWA_5

745447 : 751340

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001807853.1\|745447_745645_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	9.9e-11	50.0
WP_077446765.1\|746333_746558_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.3e-19	73.9
WP_047425274.1\|746852_747053_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	9.0e-12	57.8
WP_054190169.1\|747771_747882_+	hypothetical protein	NA	NA	NA	NA
WP_054190168.1\|748309_748495_+	XRE family transcriptional regulator	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	77.0
WP_054190167.1\|749006_749423_+	hypothetical protein	NA	NA	NA	NA
WP_100793806.1\|749565_749799_+	hypothetical protein	M9NS63	Staphylococcus_phage	4.6e-07	93.9
WP_054190165.1\|749824_750019_+	XRE family transcriptional regulator	M9NSU5	Staphylococcus_phage	3.9e-20	86.4
WP_100793807.1\|750273_750966_+	hypothetical protein	A0A1J0MF61	Staphylococcus_phage	6.7e-70	61.8
WP_100793808.1\|750978_751149_+	hypothetical protein	A0A1J0MFV1	Staphylococcus_phage	2.0e-07	64.9
WP_054190164.1\|751145_751340_+	LSM domain protein	A0A1J0MG79	Staphylococcus_phage	8.2e-18	69.8

DBSCAN-SWA_6

931779 : 1018750

104

Staphylococcus_phage(80.0%)

tRNA,protease,terminase,plate,tail,capsid,integrase,head,holin,portal

attL 966584:966612|attR 1013135:1013163

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000858789.1\|931779_933072_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.9e-54	30.0
WP_054190669.1\|933394_936088_-	ATP-dependent helicase	A0A1X9I5C8	Streptococcus_phage	1.2e-45	34.2
WP_054190668.1\|936111_937083_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_054190667.1\|937069_938272_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	7.1e-35	43.3
WP_054190666.1\|938276_939419_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
WP_054190665.1\|939674_939992_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_001827022.1\|940327_941008_-	zinc metallopeptidase	NA	NA	NA	NA
WP_054190664.1\|941079_941667_-	DUF1405 domain-containing protein	NA	NA	NA	NA
WP_000005212.1\|941656_942232_-	IDEAL domain-containing protein	G3MAV7	Bacillus_virus	2.1e-08	27.2
WP_054190663.1\|942245_943490_-	hypothetical protein	NA	NA	NA	NA
WP_054190662.1\|943496_944795_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_054190661.1\|944804_945869_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_054190660.1\|945894_947061_-	chorismate synthase	A0A291AU41	Pandoravirus	2.0e-34	32.1
WP_000442480.1\|947529_947979_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
WP_016169114.1\|948071_949016_-	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	1.3e-10	24.4
WP_000774684.1\|949032_949758_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_000450553.1\|949760_950333_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_001043863.1\|950764_951037_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.2e-28	73.3
WP_054190658.1\|951207_952206_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000165530.1\|952222_953533_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_054190657.1\|953754_954930_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_054190655.1\|955494_955611_-	hypothetical protein	NA	NA	NA	NA
WP_054190654.1\|955641_956301_-	(d)CMP kinase	NA	NA	NA	NA
WP_054190653.1\|956377_957346_+	asparaginase	NA	NA	NA	NA
WP_054190652.1\|957461_958448_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
WP_054190651.1\|958608_958725_-	hypothetical protein	NA	NA	NA	NA
WP_054190650.1\|958850_960311_-	elastin-binding protein EbpS	NA	NA	NA	NA
WP_054190649.1\|960463_961843_-	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.2e-55	33.3
WP_054190648.1\|961832_962786_-	hypothetical protein	NA	NA	NA	NA
WP_001151997.1\|962893_963142_+	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
WP_054190647.1\|963247_963793_-	ECF transporter S component	NA	NA	NA	NA
WP_100793812.1\|964439_965354_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_054190756.1\|965411_966317_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_061390271.1\|966407_966659_-	hypothetical protein	A0ZS61	Staphylococcus_virus	2.4e-25	100.0
966584:966612	attL	NA	NA	NA	NA
WP_024937002.1\|966841_967825_-	Panton-Valentine bi-component leukocidin subunit F	A0A2I6PEU3	Staphylococcus_phage	4.0e-185	100.0
WP_000239545.1\|967820_968759_-	Panton-Valentine bi-component leukocidin subunit S	A0A2I6PER8	Staphylococcus_phage	3.7e-180	100.0
WP_100793813.1\|969148_970603_-	CHAP domain-containing protein	A0A2I6PET7	Staphylococcus_phage	4.8e-288	99.8
WP_000339146.1\|970613_970916_-\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
WP_000466784.1\|971051_971351_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_000916020.1\|971396_971561_-	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
WP_001166599.1\|971553_971943_-	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
WP_054189545.1\|971942_973409_-\|plate	BppU family phage baseplate upper protein	A0A2I6PDE3	Staphylococcus_phage	8.4e-272	99.0
WP_000429558.1\|973408_975319_-	minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
WP_054189544.1\|975334_975625_-	hypothetical protein	U5U457	Staphylococcus_phage	7.9e-49	99.0
WP_000384462.1\|975624_977208_-	peptidase	Q8SDP1	Staphylococcus_virus	7.1e-309	100.0
WP_020444679.1\|977216_978041_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	1.2e-158	99.6
WP_054189543.1\|978040_984241_-\|tail	phage tail tape measure protein	M9QQM6	Staphylococcus_phage	0.0e+00	99.6
WP_000438833.1\|984254_984413_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_000589167.1\|984454_984805_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
WP_000169127.1\|984862_985318_-	Ig domain-containing protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
WP_000807536.1\|985409_986051_-\|tail	tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
WP_001023806.1\|986085_986481_-	DUF3168 domain-containing protein	A0A2I6PEQ4	Staphylococcus_phage	8.8e-67	100.0
WP_000110023.1\|986481_986883_-	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	8.1e-68	100.0
WP_000395498.1\|986879_987212_-	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
WP_000050973.1\|987223_987502_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
WP_001142735.1\|987570_988734_-\|capsid	phage major capsid protein	A0A2I6PE62	Staphylococcus_phage	3.6e-217	100.0
WP_000061866.1\|988745_989519_-\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
WP_001100665.1\|989502_990741_-\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	1.2e-234	100.0
WP_050974185.1\|990745_992437_-\|terminase	terminase large subunit	Q4ZD20	Staphylococcus_virus	0.0e+00	99.8
WP_000778933.1\|992426_992732_-\|terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
WP_000160686.1\|992858_993173_-	HNH endonuclease	A0A2I6PEN4	Staphylococcus_phage	5.0e-57	100.0
WP_000528512.1\|993329_993767_-	transcriptional regulator	A0A2I6PEN3	Staphylococcus_phage	7.9e-77	100.0
WP_001793488.1\|993779_995147_-	DEAD/DEAH box helicase	A0A2I6PE95	Staphylococcus_phage	1.7e-263	100.0
WP_001548892.1\|995127_995418_-	VRR-NUC domain-containing protein	A0A2I6PE31	Staphylococcus_phage	6.5e-51	100.0
WP_100793814.1\|995551_995650_+	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	1.1e-10	96.9
WP_054189542.1\|995758_998206_-	hypothetical protein	R4WAL1	Staphylococcus_phage	0.0e+00	99.3
WP_000265258.1\|998257_998458_-	DUF1514 family protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
WP_001825321.1\|998525_998693_-	transcriptional activator RinB	A0A2I6PF16	Staphylococcus_phage	2.1e-22	100.0
WP_001125015.1\|998680_998881_-	hypothetical protein	A0A2I6PF22	Staphylococcus_phage	1.8e-28	100.0
WP_000195789.1\|998855_999044_-	DUF1381 domain-containing protein	A0A2I6PF34	Staphylococcus_phage	2.3e-25	100.0
WP_001209219.1\|999060_999234_-	hypothetical protein	S4SVD5	Staphylococcus_phage	3.6e-25	100.0
WP_054189541.1\|999270_999798_-	dUTP pyrophosphatase	A0A2I6PF13	Staphylococcus_phage	8.6e-94	99.4
WP_000700108.1\|999790_1000033_-	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
WP_000370296.1\|1000022_1000259_-	DUF1024 family protein	A0A2I6PF11	Staphylococcus_phage	4.0e-35	100.0
WP_000178883.1\|1000430_1000679_-	hypothetical protein	A0A2I6PF06	Staphylococcus_phage	3.6e-42	100.0
WP_000235381.1\|1000687_1000888_-	hypothetical protein	A0A2I6PF32	Staphylococcus_phage	1.3e-29	100.0
WP_000111488.1\|1000890_1001148_-	DUF3310 domain-containing protein	A0A2I6PF10	Staphylococcus_phage	5.7e-43	100.0
WP_000113981.1\|1001147_1001549_-	PVL family protein	A0A2I6PF14	Staphylococcus_phage	1.2e-68	100.0
WP_001164629.1\|1001548_1001734_-	DUF3113 family protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
WP_001796208.1\|1001746_1003699_-	DNA polymerase	A0A2I6PF18	Staphylococcus_phage	0.0e+00	100.0
WP_000645042.1\|1003767_1004325_-	DUF2815 family protein	A0A2I6PF05	Staphylococcus_phage	1.8e-97	100.0
WP_000762547.1\|1004350_1005517_-	DUF2800 domain-containing protein	A0A2D1G5B8	Staphylococcus_phage	8.3e-222	100.0
WP_000985984.1\|1005513_1005876_-	hypothetical protein	Q4ZCP8	Staphylococcus_virus	1.4e-55	99.2
WP_000175001.1\|1005890_1006214_-	hypothetical protein	A0A2I6PDL5	Staphylococcus_phage	1.7e-52	99.1
WP_001285954.1\|1006292_1006454_-	DUF1270 domain-containing protein	A7TWM3	Staphylococcus_phage	8.6e-21	100.0
WP_001124160.1\|1006466_1006730_-	helix-turn-helix domain-containing protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
WP_001097552.1\|1006754_1006970_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
WP_001128433.1\|1007024_1007390_+	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
WP_001025401.1\|1007358_1007604_-	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
WP_000642492.1\|1007659_1007869_+	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
WP_000939498.1\|1007858_1008002_-	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
WP_001148544.1\|1008030_1008807_-	Rha family transcriptional regulator	A0A2I6PD87	Staphylococcus_phage	1.1e-140	100.0
WP_001121027.1\|1008820_1009057_-	helix-turn-helix transcriptional regulator	A0A2I6PD81	Staphylococcus_phage	1.5e-37	100.0
WP_000333630.1\|1009208_1009523_+	helix-turn-helix transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
WP_000525004.1\|1009535_1009997_+	hypothetical protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
WP_000755718.1\|1010014_1010449_+	hypothetical protein	A0A2I6PEM0	Staphylococcus_phage	1.2e-24	100.0
WP_000449655.1\|1010477_1010873_+	hypothetical protein	A0A2I6PEJ7	Staphylococcus_phage	3.8e-70	100.0
WP_001795334.1\|1010962_1011109_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-16	100.0
WP_000191466.1\|1011105_1011720_-	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
WP_100793815.1\|1011845_1013051_+\|integrase	site-specific integrase	A0A2I6PEN0	Staphylococcus_phage	3.8e-222	99.8
WP_054189540.1\|1013093_1015121_-	hypothetical protein	B5WZK7	Staphylococcus_phage	1.6e-108	91.5
1013135:1013163	attR	NA	NA	NA	NA
WP_061745606.1\|1015132_1016041_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_000987769.1\|1016292_1018044_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
WP_000064078.1\|1018024_1018750_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-45	43.0

DBSCAN-SWA_7

1073859 : 1082171

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054190032.1\|1073859_1074645_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-19	28.3
WP_054190033.1\|1074770_1075661_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062177.1\|1075670_1077017_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_054190034.1\|1077130_1078231_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	6.1e-09	30.6
WP_054190035.1\|1078233_1078911_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1079041_1080148_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_054190036.1\|1080371_1082171_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.0e-54	36.0

DBSCAN-SWA_8

1149159 : 1162315

uncultured_Mediterranean_phage(37.5%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001058583.1\|1149159_1151349_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
WP_054190390.1\|1151714_1153031_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	6.4e-45	33.1
WP_054190072.1\|1153272_1153791_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.3e-29	46.5
WP_054190073.1\|1153812_1156086_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.8e-64	29.5
WP_054190074.1\|1156288_1158568_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.1e-31	34.8
WP_001160682.1\|1158842_1159103_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_054190075.1\|1159121_1160261_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.3e-85	44.7
WP_054190076.1\|1160283_1161309_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|1161310_1162315_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_9

1286610 : 1402670

130

Staphylococcus_phage(96.3%)

transposase,tRNA,protease,terminase,tail,capsid,integrase,head,holin,portal

attL 1370041:1370059|attR 1413995:1414013

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054190151.1\|1286610_1293168_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	1.2e-208	66.5
WP_054190152.1\|1293492_1293804_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.5e-50	95.1
WP_054190153.1\|1293825_1296240_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
WP_054190154.1\|1296531_1297713_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.6e-217	99.2
WP_000526539.1\|1297822_1298776_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_054190156.1\|1298772_1299336_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	4.6e-101	97.3
WP_000757543.1\|1299457_1299859_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_100793819.1\|1300736_1302383_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	5.7e-285	95.6
WP_054190561.1\|1302413_1303241_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014937042.1\|1303243_1303363_-	hypothetical protein	NA	NA	NA	NA
WP_054190562.1\|1303474_1304476_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.0e-184	99.4
WP_054190563.1\|1304597_1305062_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-69	98.1
WP_054190564.1\|1305074_1306256_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-225	99.0
WP_054190565.1\|1306266_1306899_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-110	98.1
WP_077446711.1\|1306905_1307937_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
WP_054190567.1\|1308429_1309932_-	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_054190568.1\|1310572_1310887_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	3.1e-51	96.2
WP_054190569.1\|1310886_1312179_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	6.3e-223	97.7
WP_054190570.1\|1312264_1313119_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1313388_1313613_-	hypothetical protein	NA	NA	NA	NA
WP_054190571.1\|1313811_1314282_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	9.7e-81	96.8
WP_054190572.1\|1314394_1314838_+	competence protein ComK	NA	NA	NA	NA
WP_054190573.1\|1314824_1315268_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	7.3e-54	84.4
WP_054190608.1\|1315565_1316201_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096494.1\|1316641_1317355_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_054190574.1\|1317614_1317917_+	hypothetical protein	NA	NA	NA	NA
WP_001200540.1\|1318171_1318537_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.8e-59	99.2
WP_054190575.1\|1318533_1318881_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.9e-20	87.9
WP_054190576.1\|1319130_1319964_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	4.3e-156	98.6
WP_000366165.1\|1320175_1321084_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
WP_000933822.1\|1321208_1322402_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_100793820.1\|1322773_1324366_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.6
WP_077446713.1\|1324846_1325593_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	5.1e-140	97.2
WP_077446708.1\|1325597_1326071_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.2e-83	98.7
WP_000718107.1\|1326136_1326394_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_054190580.1\|1326390_1327392_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.8e-180	95.2
WP_054190581.1\|1327396_1328875_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.3e-276	95.5
WP_077446714.1\|1329033_1329489_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	5.7e-70	89.0
WP_077446709.1\|1329789_1330440_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	1.0e-19	61.6
WP_054190584.1\|1331592_1332219_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	2.3e-77	87.6
WP_054190585.1\|1332259_1332601_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	7.8e-56	96.5
WP_054190586.1\|1332701_1333274_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.7e-24	93.1
WP_054190587.1\|1333650_1334487_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_054190589.1\|1335293_1335740_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_001801861.1\|1336191_1336287_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_054190590.1\|1336409_1336511_+	hypothetical protein	NA	NA	NA	NA
WP_070016714.1\|1336960_1337158_+	hypothetical protein	NA	NA	NA	NA
WP_054190592.1\|1337179_1337683_+	hypothetical protein	NA	NA	NA	NA
WP_054190593.1\|1338237_1338681_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_054190594.1\|1338680_1339124_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_054190595.1\|1339648_1342066_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA
WP_054190596.1\|1342191_1342566_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_054190597.1\|1342555_1342936_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_061745620.1\|1343143_1343539_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_054190599.1\|1343987_1345598_+	lipase	NA	NA	NA	NA
WP_054190600.1\|1345612_1345912_+	secretion protein	NA	NA	NA	NA
WP_000669789.1\|1346994_1347174_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001791826.1\|1347484_1347745_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702262.1\|1347797_1348148_-	complement inhibitor SCIN-A	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
WP_096001319.1\|1348656_1349115_-	amidase	R9QTN8	Staphylococcus_phage	1.3e-85	99.3
WP_000919350.1\|1349641_1350133_-	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
WP_000861038.1\|1350323_1351079_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|1351090_1351345_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_001791821.1\|1351396_1351504_+	hypothetical protein	NA	NA	NA	NA
WP_077446684.1\|1351556_1351733_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	1.2e-20	93.1
WP_054190602.1\|1351884_1352196_-	DUF2951 family protein	D2JLG2	Staphylococcus_phage	5.3e-35	81.6
WP_001040261.1\|1352253_1352541_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_001153681.1\|1352587_1352740_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_100793822.1\|1352729_1356515_-	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.3
WP_000567408.1\|1356530_1358015_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_054190603.1\|1358011_1362541_-\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	99.4
WP_001096355.1\|1362785_1363136_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_072050172.1\|1363185_1363410_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	8.8e-32	98.6
WP_000268741.1\|1363451_1364096_-\|tail	phage tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
WP_000565498.1\|1364096_1364504_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000114225.1\|1364500_1364905_-	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
WP_000755150.1\|1364901_1365264_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000150936.1\|1365247_1365532_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238236.1\|1365521_1365806_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
WP_000154555.1\|1365825_1366971_-\|capsid	phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
WP_000861914.1\|1366994_1367732_-\|protease	Clp protease ClpP	C8CH20	Staphylococcus_phage	2.3e-129	100.0
WP_000025274.1\|1367715_1368903_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000625088.1\|1368918_1370580_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
1370041:1370059	attL	NA	NA	NA	NA
WP_000402904.1\|1370576_1370921_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988336.1\|1371050_1371350_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
WP_000590126.1\|1371581_1371998_-	hypothetical protein	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
WP_000265041.1\|1372025_1372226_-	DUF1514 family protein	R9QT57	Staphylococcus_phage	1.1e-28	100.0
WP_000595265.1\|1372225_1372375_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000195820.1\|1372371_1372578_-	DUF1381 domain-containing protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
WP_001066444.1\|1372614_1373151_-	hypothetical protein	A0A1X9H0S5	Staphylococcus_phage	1.4e-96	100.0
WP_015581851.1\|1373143_1373632_-	DUF1024 family protein	A0A0H3U313	Staphylococcus_phage	5.8e-12	54.3
WP_000197968.1\|1373624_1374035_-	hypothetical protein	A0A1X9H0B8	Staphylococcus_phage	2.3e-70	100.0
WP_001105598.1\|1374031_1374541_-	hypothetical protein	A0A1X9H0D4	Staphylococcus_phage	3.2e-93	100.0
WP_000982711.1\|1374537_1374987_-	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	2.1e-80	99.3
WP_000131366.1\|1375051_1375294_-	hypothetical protein	A0EWX8	Staphylococcus_phage	3.9e-41	100.0
WP_000101274.1\|1375297_1375666_-	hypothetical protein	W5RAK8	Staphylococcus_phage	8.2e-51	100.0
WP_000401964.1\|1375678_1376083_-	RusA family crossover junction endodeoxyribonuclease	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
WP_000338528.1\|1376091_1376310_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000148301.1\|1376316_1377201_-	DnaD domain protein	S4V6D4	Staphylococcus_phage	3.1e-136	95.9
WP_000934770.1\|1377230_1377701_-	single-stranded DNA-binding protein	A0A0E3T9H6	Staphylococcus_phage	4.8e-80	99.4
WP_071621397.1\|1377701_1378319_-	MBL fold metallo-hydrolase	S4SWA4	Staphylococcus_phage	9.1e-87	100.0
WP_031764964.1\|1378399_1379320_-	recombinase	A0A2I6PDH5	Staphylococcus_phage	3.0e-166	99.7
WP_100793823.1\|1379321_1381265_-	AAA family ATPase	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	98.9
WP_001205732.1\|1381273_1381537_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291489.1\|1381545_1381806_-	DUF1108 family protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
WP_000066020.1\|1381898_1382060_-	DUF1270 domain-containing protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
WP_001120197.1\|1382056_1382377_-	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
WP_000275058.1\|1382435_1383068_+	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
WP_000939496.1\|1383082_1383223_-	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_000388066.1\|1383253_1383448_-	hypothetical protein	A0A1X9H0A2	Staphylococcus_phage	1.5e-19	100.0
WP_001148618.1\|1383464_1384217_-	oxidoreductase	A0A1X9H0A0	Staphylococcus_phage	8.7e-140	100.0
WP_054190605.1\|1384273_1384813_+	hypothetical protein	A7TW92	Staphylococcus_phage	6.5e-97	99.4
WP_000435341.1\|1384836_1385097_-	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
WP_000548578.1\|1385109_1385349_-	helix-turn-helix transcriptional regulator	G4KNM9	Staphylococcus_phage	2.3e-38	100.0
WP_000094093.1\|1385519_1386227_+	helix-turn-helix transcriptional regulator	G4KNM8	Staphylococcus_phage	7.7e-130	100.0
WP_001089804.1\|1386380_1386566_+	hypothetical protein	A0A2I6PDS4	Staphylococcus_phage	2.3e-25	100.0
WP_000705238.1\|1386765_1386933_+	hypothetical protein	Q4ZDJ4	Staphylococcus_virus	1.7e-24	100.0
WP_000391618.1\|1387072_1387612_+	type II toxin-antitoxin system PemK/MazF family toxin	U5U4R0	Staphylococcus_phage	9.0e-14	33.1
WP_054190606.1\|1387784_1388822_+\|integrase	site-specific integrase	A0A1X9H022	Staphylococcus_phage	8.5e-178	99.4
WP_061745621.1\|1389470_1391027_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.4e-287	99.0
WP_054190775.1\|1391607_1392177_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	8.8e-36	49.5
WP_077446694.1\|1392654_1393353_-	BsaG protein	A0A2H4PQH0	Staphylococcus_phage	9.6e-109	91.4
WP_054190776.1\|1393349_1394111_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	1.1e-126	95.7
WP_054190777.1\|1394107_1394800_-	lantibiotic protection ABC transporter ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	9.2e-120	97.0
WP_054190778.1\|1394822_1396196_-	S8 family serine peptidase	A0A2H4PQH1	Staphylococcus_phage	3.8e-242	93.7
WP_054190779.1\|1396205_1396724_-	phosphopantothenate--cysteine ligase family flavoprotein	A0A2H4PQG9	Staphylococcus_phage	3.6e-92	95.3
WP_054190780.1\|1396739_1397984_-	lanthionine synthetase C family protein	A0A2H4PQH9	Staphylococcus_phage	1.2e-207	86.7
WP_054191893.1\|1397976_1400970_-	lantibiotic dehydratase	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	90.2
WP_000432510.1\|1401034_1401178_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	3.8e-20	100.0
WP_054190782.1\|1402151_1402670_+	hypothetical protein	A0A0D4DCT6	Staphylococcus_phage	9.1e-64	74.4
1413995:1414013	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024998

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection