CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP024969	Mesoplasma tabanidae strain BARC 857 chromosome, complete genome	2 crisprs	DEDDh	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP024969_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024969_1

456179-456427

Orphan

Consensus_repeat	Method
ACTTTCATATTTATCTTCAACATCGTCTAAGAATTTTAAAGCATCCATTGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP024969_1

>merge|NZ_CP024969|1|456179-456427|CRISPRCasFinder
ATCTGAATATTTTCCTTCAACATCATCTAAGAATTTTAAAGCATCCATTGTTGAATCAGTTTCACTTTCTTCTAATGTTTCATCTTTTAATGACTGATTTAGTATACTTTCATATTTATCTTCAACATCGTCTAAGAATTTTAAAGCATCCATTGTTGAACTTACTTCATTATCATCATCTAAATCAAGAGTTAATAAACTTTCATATTTATCTTCAACATCGTCTAAGAATTTTAAAGCATCCATTGT

>NZ_CP024969|1|1|456179-456427|CRISPRCasFinder
ATCTGAATATTTTCCTTCAACATCATCTAAGAATTTTAAAGCATCCATTGT	TGAATCAGTTTCACTTTCTTCTAATGTTTCATCTTTTAATGACTGATTTAGTAT
ACTTTCATATTTATCTTCAACATCGTCTAAGAATTTTAAAGCATCCATTGT	TGAACTTACTTCATTATCATCATCTAAATCAAGAGTTAATAA
ACTTTCATATTTATCTTCAACATCGTCTAAGAATTTTAAAGCATCCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024969.1\|WP_100679536.1\|461240_461756_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP024969.1\|WP_167373325.1\|465863_466472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679527.1\|448122_448374_-\|YneF-family-protein	unknown	unknown	gnl\|CDD\|179056
NZ_CP024969.1\|WP_100679526.1\|447478_447979_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225382
NZ_CP024969.1\|WP_011183260.1\|469834_469999_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP024969.1\|WP_100679532.1\|452740_453445_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679542.1\|468076_469042_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP024969.1\|WP_100679530.1\|450644_451742_-\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|213834
NZ_CP024969.1\|WP_100679533.1\|453503_455807_-\|DUF285-domain-containing-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP024969.1\|WP_100679537.1\|461812_464728_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP024969.1\|WP_167373324.1\|465325_465871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679529.1\|450361_450616_-\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|368690
NZ_CP024969.1\|WP_100679524.1\|444427_445969_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP024969.1\|WP_100679540.1\|466473_467145_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679541.1\|467224_467932_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679528.1\|448410_450378_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP024969.1\|WP_100679852.1\|464720_465317_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP024969.1\|WP_167373323.1\|445971_447102_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|238223
NZ_CP024969.1\|WP_100679531.1\|451726_452638_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679535.1\|458513_461135_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582

Protein	Function_ID	Function_description	E-value
NZ_CP024969.1\|WP_100679542.1\|468076_469042_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	6.54821e-68
NZ_CP024969.1\|WP_100679533.1\|453503_455807_-\|DUF285-domain-containing-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.224e-52
NZ_CP024969.1\|WP_100679527.1\|448122_448374_-\|YneF-family-protein	gnl\|CDD\|179056	PRK00523, PRK00523, hypothetical protein; Provisional.	6.53847e-24
NZ_CP024969.1\|WP_100679526.1\|447478_447979_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.82077e-13
NZ_CP024969.1\|WP_011183260.1\|469834_469999_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	9.20545e-05
NZ_CP024969.1\|WP_100679530.1\|450644_451742_-\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|213834	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. [Protein synthesis, Other].	5.5927e-139
NZ_CP024969.1\|WP_100679536.1\|461240_461756_-\|hypothetical-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	0.00501785
NZ_CP024969.1\|WP_100679537.1\|461812_464728_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP024969.1\|WP_100679529.1\|450361_450616_-\|DUF896-domain-containing-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	8.94113e-22
NZ_CP024969.1\|WP_100679524.1\|444427_445969_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP024969.1\|WP_100679528.1\|448410_450378_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP024969.1\|WP_100679852.1\|464720_465317_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	3.81517e-92
NZ_CP024969.1\|WP_167373323.1\|445971_447102_+\|IMP-dehydrogenase	gnl\|CDD\|238223	cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.	0
NZ_CP024969.1\|WP_100679535.1\|458513_461135_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0

>NZ_CP024969.1|WP_100679533.1|453503_455807_-|DUF285-domain-containing-protein
MKVLLGFLCALSLTTNGVILAVSCSSENVTNKKIDLPGLILEKDLGKLESDDKQIVEDALLKQNPKLKINEVKLTITAIPKGLEIKKYTVTVEPIENSLVYSGKVEDITFYTEAIYLDDLSSVILEKDLGKLESDDKQIVEDALLKQNSKLKINEVKLTITAIPKGLEIKKYTVTVEPIENSLVYSGKVEDITFYTEAIYLDDLSSVILEKDLGELESDDKQIVEDALLKQNPKLKINEVKLTITAIHKGFEIKKYTVTVEPIENSLVYSGKVEDITFYTEKNYLDDLPGLILEKDLGKLESDDKQIVEDALLKQNPKLKINEVKLTITAIPKGLEIKKYTVTVEPIENSLVYSGKVEDITFYTEKNYLDDLSSVILEKDLGELESDDKQIVEDALLKQNPKLKINEVKLTITAIHKGFEIKKYTVTVEPIENSLVYSGKVEDITFYTEKNYLDDLPGLILEKDLGKLESDDKQIVEDALLKQNPKLKINEVKLTITAIPKGLEIKKYTVTVEPIENSLVYSGKVEDITFYTEKNYIDDLTYYIDIDSEKEISIKGSAPDGTKIVTNIGYDKNGLAYKLPNSIEQVPNSVSKNITSFKNLFRFTKNFNQDISSWDVSNIIDMSYMFAYSSFDSNISIWNVSKVKNMEAMFTGTNFDQTVIDWKVSNVTNMSYMFALNYNFDQDLSKWDVSKVTNTKKMFQNSIFNQNISEWNVSNVTDMSYMFNNSNFNNDISKWNVLNVRNHQGFDENTNWQNEYKPKFKDMSKLN
>NZ_CP024969.1|WP_100679532.1|452740_453445_+|hypothetical-protein
MILSKLTSNILINELIDDINSCIKNMNLVEELNQSNDYNFNNLHEIYNNKLIELFELDNVLSSINIFIEDFTQQVSKMLIDEKQTFKLNHSKEQENKKRVFEFIIFIQNKLLNYKKIIISLNWILEKMGNDVEINENNKIEFYSLVDFNIERRFKKIREDIELSSNLLDLENVFINEFEKLNLNDKKEQLEKLLSSINFDSILEMHDVDEIIRISQMSTSINFLIKFIEVINKI
>NZ_CP024969.1|WP_100679531.1|451726_452638_-|hypothetical-protein
MKYKNLEIKDNSIKLNKYQSIHFNFEGLQNKLKEIKFPVLILDTEFFNRSHDFENIKPKLYSEEEKDIVYLMNYSFAKNFNEVLTRNNHKSINSLSIKRKINDDKYDFKNQYQSMIKSFINMCVNKNIRTIIFAGQDNDKKIIEQWINTYKALFKNKKTDLFIFNKDTKSYKLNSFDIYDALEQNLSFSNYSKNGEKFYNEQNLKKGDVDDSIKIRSLKKFFDYTEELHNKYNFKDDNITFLCSRALKLFSLENVSQYEHNKLSKSLKEARSHCYDDVLKILVLIKFLSYIMNKQMGETWASV
>NZ_CP024969.1|WP_100679530.1|450644_451742_-|ribosome-biogenesis-GTPase-YqeH
MSKCIGCGILKQNKDQNKPGYVIKPENEYCLRCFKIKNYNELINQEINAEQFILKLKTLIQNDKPKDIEFFYIIDIFDLEGSRVKEIEEAIKRYPVTIVVNKIDLLPKAVKLAKIRRYITDLFSKSAIYDANIILNTSFKNNFTNSLLNKIKKTKTKKYFIGSSNVGKSSIINSLLRANNLIPQIVESKYFNTTLDFIQIKLSSDDIIFDTPGIARSNSAANLLDKEEWKYIYFNKEVAQNTFQLKPFNSIFYAGIAWVDFEWESDEINSFHFFNNKEIKLHRTNTKNAFDYYTRNKENIVPYNLDNNFVKREFIFSEKDINKEFEISISGLGWFNFKVKNPMKITINIPTSNVEVETTLRKPLV
>NZ_CP024969.1|WP_100679529.1|450361_450616_-|DUF896-domain-containing-protein
MSQSKEMSMPEVIQEINRLAKIKKDRELTSEESTYREELKALYLKYFRSGFEQQLKSTKVIDAQGNDVTPSKLKNEGDKYDKQK
>NZ_CP024969.1|WP_100679528.1|448410_450378_-|transketolase
MINKNNNNLNALRILGVSAINKANSGHPGIVLGAAPIVYTLFNKIMKHNPKNPKWFDRDRFVLSAGHGSALLYSALHLAGYNLSMDEIKNFRQWNSKTPGHPESHLTEGVDVTTGPLGQGIAMAVGLAIAESHTASVYNQSDLKLVDHHTFVLCGDGDLQEGVAQESISLAGRLKLNKLIIIHDSNDIQLDDKVEKAQSENMHERFKAAQWNTLKINDGEDLVAIEKAINDAKASDKPTYIEVKTIIGIGATKQGTSAVHGAPIGSDIETVKNAFDWKYNDFEIPNEVYSHWNENISKNLSIESKWNEDLNKLKALKPELAKQFVNALNKEINFDYEELLAKAPEKAEATRVSSGNIWDSINAQVKFLIGGSADLVSSTRIKGADGQFDVDNRSGRNILYGVREFAMGAINNGIHQHGGLIPFSSGFFVFSDYMKPAMRLSSIMNSQQLFIFTHDSVAVGEDGPTHQPIEQLAMIRSIPNHITFRPADYAETLASYKIALQDLKNCPSTLVLTRQDLVQLPHNDVYEEVKRGAYLMLDQPNATITLIATGSEVGLAMQTAAKLKEEGIIAKVVSMPSTNLFDQQEQSYKDKIIDKSTLRVSIEMGTTYGWSKYTADNGLNIGIDIFGASAPANTIINQYGFTSEQIFNKIKKVIK
>NZ_CP024969.1|WP_100679527.1|448122_448374_-|YneF-family-protein
MVLLTTEFSAGGLAGMLIGVILGAIILGAIIGFFITRSMVKKQLKDNPPVTEKQIRAMYMSMGRKPSESDIKKTMRAMQQAKK
>NZ_CP024969.1|WP_100679526.1|447478_447979_-|helix-turn-helix-domain-containing-protein
MNNYKQISLKERTLIEYLLNVQNKSVFFIAKELNRNRSTIYREIKRNKAAMIYKAKDSQFTRDINNTLSHQNKISKYNEFLKFLYINFNPKSFSIDVCVFKAKELGIKTPATQTVYNWIKNKQIKIKSKDLLRPRFWWKKSSKYKHYLWEISKMNSILITYIPKKY
>NZ_CP024969.1|WP_167373323.1|445971_447102_+|IMP-dehydrogenase
MNKDLNGKIINEAITFDDVLLVPNYSEVLPHEVCLKTKLTKNIELNIPIISAAMDTVTESELAIAIANIGGIGIVHKNLTIEQQAKEIKIVKSSKPSEEYKNACIDAKGSLRVGGAVGVNDETLTRLEALISAGIDVLVVDSAHGHSKGIIDVVKSIRSKYPNLDIIAGNICTVEGAEALYNAGANCIKVGIGPGSICTTRVVAGVGVPQITAINDVYNWSINKDVTLIADGGIKYSGDVVKALAAGAHSVMLGSMLAGTEEAPGQEVIINNKRYKTYVGMGSLAAMKRGSSDRYFQKGAKKLVPEGIEAVVPFKGTLEEVIFQLVGGLRSGMGYTGSNTIDSLRQNAKFVKITGASLKESHPHDVEISAEAPNYK
>NZ_CP024969.1|WP_100679524.1|444427_445969_+|glutamine-hydrolyzing-GMP-synthase
MKNTQILILDFGSQYTQLLARRVREANIYTEVLPFDTSIEKIKQYPLLKGIILSGGPSSVYLQNAYKIDSEILNLDIAILGVCYGMQLLTQYFEGAVELANEQEFGKAIITIDDKNNPLFRNIDTNTQVWMSHADHVTKLPKDFKQIAHSNASIAGISHITKPIYGIQFHAEVTHSLQGKEMLENFLYDVAKCTKDWNLDDFIEEQIKEIKEIVQDKQVILGLSGGVDSSVAAAIIGKAIGKQLTCIFVDTGLLRKNESHEVMKAYETNFDINIKLVNASDLFFSKLKNIKEPEAKRKVIGKCFIDVFTNAAREYKDADFLAQGTIYPDVIESSSHGASSKTIKSHHNVGGLPEDLKFKLIEPLRNLFKDEVRQVGFKLGLPEEMINRHPFPGPGLGIRVIEEVTRDKVAILQEVDAIFIKKLRDWNLYNSVSQAFVTLLPVKTVGVMGDNRTYDYVVALRSVNTIDFMTATSTHLPWEFLDEVVNEIINKVDNVNRVVYDVTSKPPGTIEWE
>NZ_CP024969.1|WP_100679535.1|458513_461135_-|valine--tRNA-ligase
MKKELEAKYSYEIVEKNRYEWWIQNEYFKANPDSKKPKFSIVLPPPNVTGKLHIGHAWDGSLQDAIIRFKKLNGFDVLYLPGMDHAGISTQVKVEAKLREQGISRFELGREKFLEQAWKWKHEYAAIIRQQWSKLGLAFDYSMEKFTLDDDINKIVTEIFVDFYNKGLIYKGKRIVNWDPMQKTAISNVEVIYKEVEGFMYHFKYMIQGTNEFLNVATTRPETMFADQCLVVNPKDERYTSFIGKNAINPVNKQAIPIIADDYVELDFGTGVMKCTPAHDLNDFEIAVRHNLEKPICMNEDGTINEMGGQEYQGLDRFEARNKIIENLTKEKTFIKAEPMIHQVGFSERSNAIVEPYLSDQWFVKMDSFADMILKLQESNDKIRFFPERFDQVLKKWMENIHDWTISRQLWWGHRIPAWYNKEDKTKIYVGMEAPKDAENWIQDEDVLDTWFSSGLWPFATLMRGEGFESKYFKEYLPNGVLVTGHDIIFSWVSRMIFQTIEYTGQIPFNDVLIHGLVRDEHGTKMSKSLGNGIDPMDVIANNGSDSLRFSLLTNSTPGQDIRYSDSKVKAGWNFINKLWNASRYVLMNLEEDFKPWEEQAILNSNSLNETDKWVLTEFSKVSKQVNYLIDKYEFAIAGKMLYDFVWNTYCSWYIEFAKVNLNNPKTKEATQQTIVYLLKNILIMLHPYLPFVTEHIYKSLDMKNSILEESWFDKEFIFETDYINVVIELINSIREFRAANNIKNNVVLNWNATNGNLEIITKYNLEINNFLNEFLNANLSINESLISETTSLSVLDFFIEIPNDDFIDKEKMLEELATKKKELENEINRSERMLSNENFISKAAPSKIEEEKEKYELYKQQLELIQDKLNKM
>NZ_CP024969.1|WP_100679536.1|461240_461756_-|hypothetical-protein
MKKLETKTIYWGFPVCLLPILDLIPNSTSKAYENIKLNKKLILNVVPSQMWNKIEKIANFSASKTNVIKGKELVIDKIAKTNLKLVKSDFKIDYIENTTLYIEAFYEGELLKNGIANICLSVKNIYINESMINEEGFVDEDKFDVLIYQFRKYKKINNTELGKSFRYIPCK
>NZ_CP024969.1|WP_100679537.1|461812_464728_-|cation-translocating-P-type-ATPase
MDSWESSQIKEIENKLDSDIKTGLTEEEAKKRLIENGKNELPTAKVTPWWVTFLHAFLEPLQLILMFAAVISVVAPLISSPGEKLGFHEFIDFVVIMLIVIVDAVLETIQTVKARKSVDALKSLSKPKAVVLREHNQKEIDASDLVVGDIVILEAGKYVPAELRIVQSADFMIDEAILTGESVPVEKTHKAIKETTILAEKTNIAFMSTFTTAGRAVGIVIGTGLNTEIGKISEAIDKNEESETPLEKKISKFGYVISCVAGLIGIFVFLLLSLVGGFEAWASYLMVAITLAIGVIPESLAAVISITLSFSTKRMANNNVIVKKLASVETLGSVNVICTDKTGTLTQNKMTVKKVIDNNRIMDSDEYLELDKSIQKELLLKALVLPNDSITEGNERIGDPTELALVDFAELMGIDELVYRKKFERIDEIPFDSERKLMSTLNTVDKKTIAFTKGAIDQLLSICDHIMIENKVIKLTESHKHEIMRASINLSDDALRVLAFAYKEVKNNKLEEKGLTFIGAVAMIDPVRKEAVQAIEEAHAAGVEVCMITGDHAITALAIARDLGLAYDEKQVISSDKLDTMSDAELEEVIDNIRVFARVNPEHKVKIVATLQKKGYIVSMTGDGVNDAPSLSKADIGVAMGITGTDVAKQASDVILTDDNFATIMTGVNEGRNVYQKIKRAITLLMGFNLANVLSILIISLIFKISPLEATNILYINLIVESCLAIAIGMGPLDDTLMKLKPQVGKNGLLKGIILPIIKIGVLSALCSVASFFIGMMATDIKTWNNVFNSGEYIGKISLDSTNWLDQIHAIMNSSLSAIERNKLLDEYIVFGRTAMFITIVMSPLFFAHLIKISNWKASKKIKLQVSKPLIYASLIALVLSVGVITIPGLNESVLGLVGYSKETAKWTSDNIWIMFVAFAISIVPFLLILLIDAIVFYSYHLSVGNWQKNQMLIAEMINQDVKEQNKKHKK
>NZ_CP024969.1|WP_100679852.1|464720_465317_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MFKQSVFIKSAANKSGWIEDNIPEVCFVGRSNVGKSSFINTLANNKKLAKVANTPGKTRLLNFFDINNSSFRLVDAPGYGYAKISNSMKVEFGIMMEDYLITRENLKLVCMLVDLRHKPTNDDIQMYDFLKANDIPVLMIGTKLDKLKRNEIAKNEKLIKETLEFDQNDVFVKVSNLDKINIKESYDALIRLLEVENG
>NZ_CP024969.1|WP_167373324.1|465325_465871_-|hypothetical-protein
MSKMRIIIFPLIISLFLMAYSFYIAVKDWKYFKQIQELIKQDSKYFQNLKLLYICFGYLISLIIFSFVFVVITIACLVYMTNVILLVQSIICVMYMIMLIAWITLIQNKIKSIYVVAKNKKIVIWDKVFDIEEIEIIKNDIKRKKIIFKIKENKEYDIIKVSYHWELKDFLIELKMKTEFI
>NZ_CP024969.1|WP_167373325.1|465863_466472_-|hypothetical-protein
MDSKFIIAICIIILYAIILLIVGILSYIYSVKHKPFKVINDEYLKEIAEYKKVEDEILKKIKPIKTKFELSENESIYFVDELEVSFNEIVNKNNKKKEFDDEYDQYIKKLKKNYSLFKIKEKQSDLEKTLIYVSNKRIVLDNGAEFKIIKFNNVILVENYIWNFNGKYLKTIYLKTKNEEMYFVSNDLKLKSIISKFRLENE
>NZ_CP024969.1|WP_100679540.1|466473_467145_-|hypothetical-protein
MNKEIEVDFLEPGLAIVISSLENVEAELKNKKELTNLLDNLNEVEELENLTKMLNELKDIEKDLIIEIKSLNHKEEFEIISDLQIAISMSKFLAPNEFLFKFTDSIEAKTQAKEIIVNQENILEIFKEVIIKKVNEIYNESLSEFKNVYDNESEFFKVLKIAIEESNLNDLREASKLMINLLKIDRAINEEKKYEFLEILNKAESLINLIDIWSQYEMDFEEE
>NZ_CP024969.1|WP_100679541.1|467224_467932_+|hypothetical-protein
MIQIFKLKELNQSELDHIEELNSWWDKPINKKIQKCKTFISKFGLQPNDYITFDNLNEVSFNDFIKGVNNYLNFYTPKLKTIVSERHAFKKFDKSIINYMQLNGYATSISTIASFYAEKVDNDLTKFNKKEAISFANKVLIEKWNKFKREVLSNFGGNEIIKDVIKGIFENEVIYDDVLFDSRVIINTIVKYTSNLLKRTEVTEKQFLNIMYLAYLQANFIESFIYIYNGFIINL
>NZ_CP024969.1|WP_100679542.1|468076_469042_+|IS30-family-transposase
MNNYKQISLKERTLIEYLLNVQNKSVFFIAKELNRNRSTIYREIKRNKAAMIYKAKDSQFTRDINNTLSHQNKISKYNEFLRFLYVNFNPKSFSIDVCVFKAKELGIKTPTTQTVYNWIKNKQIKIKSKDLLRPRFWWKKSSKYKHYLWEISKMNSIPITYRPKNINQRKDIGHFEIDLIVSSGNSSKAIMTLVERVTRKGFAIKLENKTMKHTNEKLKELIGKENLNIKSITKDNGMEFNLLHEVTQELNVPLYTCNTYASCEKGTNENFNGLIRRYLPKKTNFTNLKDDNIIEILNEINKMPRKILNYKSAQEFYETFG
>NZ_CP024969.1|WP_011183260.1|469834_469999_-|30S-ribosomal-protein-S21
MASIIVHEGESIEKALKRFQKVASSNKAEARKREYHLSKKEKRIYKQKQNRKYK

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Crispr_ID: NZ_CP024969_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP024969_2

640728-640807

Orphan

Consensus_repeat	Method
TAAAAACTAATTCATTTTTTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP024969_2

>merge|NZ_CP024969|2|640728-640807|CRISPRCasFinder
TAAAAACTAATTCATTTTTTTTAATTGTATAGGCTAAAAAGTGTTTTATTAAATTAATAAAAACTAATTCATTATTTTTA

>NZ_CP024969|2|2|640728-640807|CRISPRCasFinder
TAAAAACTAATTCATTTTTTTTA	ATTGTATAGGCTAAAAAGTGTTTTATTAAATTAA
TAAAAACTAATTCATTATTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP024969.1\|WP_100679668.1\|643597_644533_-\|Pr6Pr-family-membrane-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679674.1\|651449_651731_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NZ_CP024969.1\|WP_100679672.1\|650214_651054_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP024969.1\|WP_100679676.1\|652070_652433_-\|transposase	unknown	unknown	gnl\|CDD\|181833
NZ_CP024969.1\|WP_100679664.1\|634815_636414_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP024969.1\|WP_167373335.1\|638099_640625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679663.1\|633781_634726_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP024969.1\|WP_100679667.1\|642597_643608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679666.1\|637251_637998_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP024969.1\|WP_100679662.1\|632159_633719_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273916
NZ_CP024969.1\|WP_100679665.1\|636414_637248_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP024969.1\|WP_100679670.1\|647810_648806_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP024969.1\|WP_100679671.1\|648808_649861_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP024969.1\|WP_100679660.1\|630021_631641_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_CP024969.1\|WP_100679658.1\|628703_629642_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP024969.1\|WP_100679661.1\|631669_632119_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP024969.1\|WP_100679675.1\|651714_651957_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP024969.1\|WP_100679673.1\|651170_651422_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP024969.1\|WP_100679669.1\|644595_647847_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224098
NZ_CP024969.1\|WP_100679657.1\|625787_628448_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319772

Protein	Function_ID	Function_description	E-value
NZ_CP024969.1\|WP_100679674.1\|651449_651731_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.64968e-14
NZ_CP024969.1\|WP_100679676.1\|652070_652433_-\|transposase	gnl\|CDD\|181833	PRK09413, PRK09413, IS2 repressor TnpA; Reviewed.	0.000137029
NZ_CP024969.1\|WP_100679664.1\|634815_636414_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP024969.1\|WP_100679671.1\|648808_649861_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	5.68928e-157
NZ_CP024969.1\|WP_100679666.1\|637251_637998_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.85313e-135
NZ_CP024969.1\|WP_100679662.1\|632159_633719_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	8.28568e-124
NZ_CP024969.1\|WP_100679669.1\|644595_647847_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.57369e-78
NZ_CP024969.1\|WP_100679665.1\|636414_637248_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.09053e-50
NZ_CP024969.1\|WP_100679657.1\|625787_628448_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|319772	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA. MgtA is a membrane protein which actively transports Mg(2+) into the cytosol with its electro-chemical gradient rather than against the gradient as other cation transporters do. It may act both as a transporter and as a sensor for Mg(2+). In Salmonella typhimurium and Escherichia coli, the two-component system PhoQ/PhoP regulates the transcription of the mgtA gene by sensing Mg(2+) concentrations in the periplasm. MgtA is activated by cardiolipin and it highly sensitive to free magnesium in vitro. It consists of a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP024969.1\|WP_100679672.1\|650214_651054_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.19501e-55
NZ_CP024969.1\|WP_100679660.1\|630021_631641_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_CP024969.1\|WP_100679658.1\|628703_629642_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.58246e-53
NZ_CP024969.1\|WP_100679675.1\|651714_651957_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	3.4315e-07
NZ_CP024969.1\|WP_100679673.1\|651170_651422_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.82894e-05
NZ_CP024969.1\|WP_100679663.1\|633781_634726_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.98676e-29
NZ_CP024969.1\|WP_100679670.1\|647810_648806_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.04739e-49

>NZ_CP024969.1|WP_167373335.1|638099_640625_-|hypothetical-protein
MKKTITLLAAVSIVGGASTTAVSCSFKGDKNKGGTTNPKPADKETSQVLLKAEIQKYLNEKGTFNSKEDAITDIQNKSDWTTEGLESLVGSIYGSDSVSSIHIKAKLKEGYVWPKTSSGEFDVIIKIDNENNVNKLAEELSTTYYKSEEEAKETIKSKFKSISGVDQVVVAKIANARSQLKYEVNLTYKNNVQGPEKKDVLINIKNNLSTDIYAANQSISKDNKKYESKVLAAKIIKETFESIKGVKSTNLVWDQWAPYNYTISIKYDDKSQGPETAEGVIQLKTNLSDAIKTAKNIFEIKEYKNSVSAKSAVETNLKIEGILNAEFSWEDEATFKYNIKFSYSNDFFGPPSISGTLLKYESATFDKIENQWIDMRKNQTISVDLKGKNLANKKISVSSDNSSITAKYADEKIVLTANDNKNIQAVIKVWDEEEKDDGIEFTTSILAKPEIATKLESEYGWYLNHETTLDISTKDFDKVKGDTFVITSQLQGNENSFPVSTYIETSLMQDSQDQQKFIFHYKFIKALPENVKVQIGLKLNGEIVSIFNLVSKSETNISEHINKTLNNIKNNYNWKEGKEDDLQNQVQNDLATINGIDQIYFEWVKKENLSYKVALTYKIGFTGEKSFINNGTWYMPAEFEQNQSLTFDMRNPSNNSYKIYGQNLSGKNFGVETDNSDIKVEIDGQVGVEGNRQYVIIKISTTAKDDVKNKITLYQDDDKNQKVEIGANVWALPYLEKIGDWPTKKLELYVSGATFRYKFIIHNYKKDLDSSIVSATSSDRESNTEEKINVFIEEVSINDGIFNWVIEPKIKNKLFGSQYAILRFKYGNAIQETKVNTWVGA
>NZ_CP024969.1|WP_100679666.1|637251_637998_-|triose-phosphate-isomerase
MRQKVIFGNWKMNGTNAELVTFLKKVDKAAKKSDVVAGLGLPFTLLSTGIEKAKNVKIAAQNVHFAEKGAFTGEVSISMLQEVGVQYVIIGHSERREMFAETDETVNKKATALLAAGMTPIICCGETLETKEAKKTVTFVNAQIKKAYKGISAEDALKTIIAYEPIWAIGTGKTATSEDAEKVCEAIRKNLTKIYDETTAQQITIQYGGSVNPSNIAELMSQPNIDGALVGGASLKADDFIALINYKK
>NZ_CP024969.1|WP_100679665.1|636414_637248_-|Cof-type-HAD-IIB-family-hydrolase
MNEIKLLVLDMDGTSYHKMGNIIESNIKPLQDAIKTGTKVAFVTGRPVLAKPNNLKAHNLAEENAILIGCNSGCIYDLNTEKVLKSSPIKSDQAKKLFEEVKNTETILWGYVDDLNTVILSRKVDDVFNEECHWEGKFFDGEYLIYEDVKDNFNFNFFKILGFNGNYALYNKFEKEFNLNIATNDGKIAEINAAGINKKFAINWLSEFFDIPLKNIAAMGDGMNDLPMIEHAGIGVALKNSEPKIKEVAQIYIDKENTEGAVAEFVNKYILKSNKEK
>NZ_CP024969.1|WP_100679664.1|634815_636414_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MKAKKPVILAILDGWGIEEASAGNAVANADQKFVKEMMDMYPWVKAHASGEWVGLPEGQMGNSEVGHIHLGAGRINMESLAKLNHEVKVDGFSTNEVLVNTFKYVQENNSSLHLMGLFSDGGVHSHMNHMISMYKAAVKFGLKNIKFDLITDGRDTAPKVAEQYIKQLLQVIKDNNNIGEIASISGRYFAMDRDKRFERSAEAYITMTERKVDQPKFTDPIEYIKAAYENGLDDEMIVPAYNASVVDSELKANDAMIFTNFRPDRAIQMASIITNKNYAAWSDEAFKGAEFIADKIRFVSTMKYADSVSSPFIAYPPTPLTNTLGEYISSLGLKQLRIAETEKIAHVTFFFDGGNDYFKNGLAKPEEISLPHASIDLISSPKVATYDLKPEMSAVEITDKLLEEVKKDEFDLIILNFANCDMVGHTGNNDATVQGVKVLDEQLKRIHDEFVLKHNGVMVITADHGNAEIMIDENGGPNKKHTTSLVPIIVTDKTIELSGFDPAIAKVAPTILDIMGLEIPKEMTQPSMFFKK
>NZ_CP024969.1|WP_100679663.1|633781_634726_-|LacI-family-DNA-binding-transcriptional-regulator
MKKQKMTYHDIAEKAEVGIGTVSRYFNNYNISEVAKTKINKVLSETNYIPNFAASNIKKPSKDVYLILPYNNDETANMEIVNGVKSSLSQQNINFFIFLSSSDSEIYQKDLKYLTMRNPYGIVLLLPKHTSSNLILQIQEIKSTKLIVYNRNIEGINSVNIDDKEIFKNLAIKIDKSYKNEKIAFIGLNKQDITTGKYRSESFTNAIQNNTVKNYLLKQNSFEHVQSIIEKVIEHNPKIIVSATHTISMYVYGHLMENKIRNKFVTTDIGRMGKSQYLTNSDINIFIDYFLIGYKIGNKLLNKDKKMENFFKII
>NZ_CP024969.1|WP_100679662.1|632159_633719_-|PTS-transporter-subunit-EIIC
MGKKEKIPQVKIDLKTWSNELVLYLGGSENIISATHCLTRLRLVIKDENLINKQKVETMPSVKGTFKSSGQYQIIIGTEVDKYFKEFVSVSGVQAVTKEKAKAIANENNGGWFLKSLNFLGEVFIPIIPVLVAGGIILGFRNILEADFNGFVIVQQNQFWQGLDDFLWVPAQVCFWWLPVHLCWSIFRKMEADQVLGIVVGLCLLVPPLMNVYEVSGEASQDGGFKWIWQIMAGMDDGAFNWGFMKYPWKIQYTAQVIPAFAIGITGAYINKWIKRTSPAVISQIIVPLVTILPTFVLAMFIIGPAGFIVASVISFAISWAFTNNVAKYFFGFIIGIVYAPIVLTGVHHLFNAVFVQDTIQNGGNFLFIGTCAQAIAQGSAVIGWILVNKKDPRAKDVGIPSVVSAYLGVTEPAMYGVNLKHMYPFVAASIATGIGLELAVISGVSAENSGNGAWLGILNVQVESKIEGVNTWIGTGYTWFMISMLITAGTAIGLTMLFSKVKYFEKFNIEVKAAELLK
>NZ_CP024969.1|WP_100679661.1|631669_632119_-|hypothetical-protein
MNLLAKTDLPGILQKTNPMAAIGFCFLVVIPSIAILIFAILGNKKEEGSCSKKIKTYRYILLGVTVAFIIAGIGMIIAYSVSTKEFYFSSKWVEEQRTYFHNLGVTLPENVYDWPQFKLPDFVTADNQEKFKAIIQSIEYAIKNNYVLA
>NZ_CP024969.1|WP_100679660.1|630021_631641_-|alpha,alpha-phosphotrehalase
MRNEVIYQIFPLTFSDGQKKGKGNIKGIINKLDYLKNLGITRIWISPFTKSPFKDSGYDVSDYCKINENFGSIEDVELLILEAKKRNLTIILDIVFNHTSNKHEWFQKALAGDQKYMNYYIFKDPIDGKEPTNWKSKMGGLSWEYVPSLNKYYLHLFTKEQPDLNWENPEVREELISILNFWKNKGISGFRLDVCNLYSKPSLFENDQIGDGRRFYTDGSKVEEYFNLMNNRVFGKDKQIFTVGEVSSTTKEKSAKYAKLENNELDSVFTFLHLKVDYENNDKWTNVKPDLSLFWKLQKEWQEYYQSQNSTLALFMNNHDQPRAVSRFGNTDKYWYESATSIFAFTSLMRGVPFIYQGEEIGMTNLKFNKISEFKDVESIGNANDLLKTKSKKEVLDILRIKSRDNARSVMQWSDELNAGFSEKQNISLFVNQNYKKINVQQQLNDKKSILSFYKKIISLRLNNEVFNEGKINFFENQDYAYSRTFKDKEIIILTNWTTENKLIKLKLDCNNWKIILNNYNEFDFNSLKPYQVVAVERK
>NZ_CP024969.1|WP_100679658.1|628703_629642_-|ROK-family-protein
MILNIDLGGNSAKCALIDNFEIKCKFFIETPKFEIIENLKKMIDIYFKENNYNWINIEAISFSVPGAYDKKNETIVFAGNLNWWNYPLLNEAKKIFSFDKIFILNDANAATYGEWKKGQKGIPESMMLFTLGTGVGHGLILNKQLWEGTKKGYASEGGHGGCFADEELLCSCGVYGCLEARSSATGIERELNKTDNKNYIESKFGKEFKTIKIIDIVELFNNDDPVIMNIFKECLLPLSKAVGYLQTVLDVDKIIIGGGPSNLGEKITKIIFDNLKKYTLKSFYEDMEIEIAKLGNDAGIWGAYYWAFENLK
>NZ_CP024969.1|WP_100679657.1|625787_628448_-|magnesium-translocating-P-type-ATPase
MKRLKKLNNNTKIELINYVDSDNNKLLKQFEVNSFGLNDEQVEINREKFGGKELKPARFNIFLVFVKSFFSPFNIILMVIDAFNFYEYIDEPNTFSLVAAVIVLIMILASGTMAFIQEVRSHLVIKKMITENKKTSKVIRNIAYNYKSIDNANSIRMIKEAESIENDELVPGDIIYLVNGDIIPADVRILWSNNLYVNQSSLTGESFPVQKKDSNDIEFESHLSYQNIGYMGTEVMSGSGLAIVVATGQKTYFSLIDNKVKEKRKSSSFEKGIKRITLYLIAFMIAVIPAVLLISGLQQGDLVKGAMFTIAIAVGITPEMLPIIVTSNLTRGYKQIEKNGEIIVKNLNSVQNIGAIDILCTDKTGTITSGEISLNKVTGVNGEKSEFLENVLYLNSYFQSGFQNPIDSAVLSSKIKKPDVEDYTKEWEIPFDFERKILSVILTSKKDKEIFTKGAVEEVLKVCNRISINGKIEKLDAKQKKIILNKTHELNLEGYRVIGIAHNILQDEDVEEELIFYGFGTFFDRPKKTSKKLIKNLASKGISTKVLTGDNEIITRAICKNVDFEITKLFSGAEIEAMDERQLNKAVVEANVFVKLSPIHKSTIIAALQAQGHAVGFMGDGINDAPVLRESDVAISFSEASNIAQDAADMILTGESLMAIENAVVEGRKSLANMLKYIKVTVASNFGNVISVIVALFLTKEEPMLALHLLLQNLLYDFVMFALVFDNVDEEFLQKPRPFTTKNIIWFAVINGPISSIFDISTFLVLIFVYNLVPFQGSVPKGSTDAMQFHASWFVVGLMTQTAVMQVYRTEKTPFIQSKCSLSMLIATIIICLAAILIPFTPVNQLVQMATPHWSFIFVALGFVGCYILLAQLVKKLYIKKFKEWL
>NZ_CP024969.1|WP_100679667.1|642597_643608_-|hypothetical-protein
MKNNYFSLKKQNAKKWFLANYEVNDWKFWFKLSFVTILLAVLIMSYLRPIINSSIYVNQINDLIKEKNIRSISDLIDEALKSGKYDWLVSSKTNGETIFNIITSINFTFIGEAKTLHANYQPFEDIWFRTSFFTLLSNILVLVWVTVSFIKPKNEGAKGLIGTNGAILTSTFITITFLIYQLSLRPTVIATGLGNGESLVQALFPSVASVIENEVFHTFVPIAFVLYVLLGMQHDSKENISIKFLHKNWIQGIITLISYGLYAIIRGLIKEAGGTASTSMYAYPYFFLQVTTPGKDGLLGVSGIAWFFIFVIVIAAIYIGFSTLYRYLIVKRIDKK
>NZ_CP024969.1|WP_100679668.1|643597_644533_-|Pr6Pr-family-membrane-protein
MFFKLKKEYFTNWYKNYSLKDWRLWYKVLFVALMTFVVLFSYIQVFVNLSLVVKQINALNLNSEITSEKLSEVLTNLNISKATEARLVFTKTSHGLLHAGYQPFEQFVQMTSFFTLISNLLILIWMYVALFKPLNEGRKGILNNKTSIIFAAYITVTFLLYNLILRITVSTIDNNFMSYFVNEMFHTVAPLLFIGYILHVVKWEAKDKLSFIELKKTWVYGILGLVIYGTYAIIRGLLKVAGGTPGSSQQAFPYPFLQVTEAKVKMGAIELPGIFLFLIFIIVIAIICVGFISLYNYIIIKKIEKGVQNEK
>NZ_CP024969.1|WP_100679669.1|644595_647847_-|ABC-transporter-permease-subunit
MKRFVRSTYFALILLVIYVPIGIMVVFSFNSGSSVSNWMGFSTRWYEEFFKNSPFIKSIITSLFVAVVSTAISVVIGVMAAIGLSRLTKRKQSKWMSVANIPLINADIITAVALMVVFLICGLKFGILTLIMAHVSFNVPYVLITVMPRLRKVDKSIVEASYDLGAKTSTVIFKVILPILKPAIVIATVIAFAMSFDDFIISYFTGGAQTNVASFIYSAKRIKPYIFAFGTMMVAIIAAGVIIWNAFLFAQEKKESTKLKIKNGTYKSKEIYKIEKEIQLLFDALNSGTKRKISFNIPIWFKYCILKFKLKIANSKNYDKKIAKLEWKRYKLQNTINREKRYASRLKKALAKQKQLEKQLSKTTEVKRAAKISIQLEKNEEKVTFLSEEIAWLNEQEKEAKEKAASINKKIKQLKKDFKAEVNPSKSTVNWYNKKIKYYEEWKIEVEEGKNNFKLRMIVEKLKEIKQINENKINDLASRLDLIATQAFRKVSVTNKLNKKIASNPNDKTLVELKKQTFIKFEQTQNDLIASKNNKIDQIKLAIAKQKEKHFPINIDEANFTKGFFARSWKVIMVSLLVLVSFTGLTVAFVMNNIYDLVIGNWGEYIDPSLIKQFEKENKVRVNYQEYDSNETLYNKLYTFNYDLMVPSDYMVQKLAEEGKLEPLDYSKINAWSKPFGDENIAINPEKMKENIKTAESENENKDSEKLEISSDLLNVMSKSEVKYVEEGEYEGKGLGSGTIVDYAIPYLWGDLVIAVNPNSIGTSRTSSNPDASNIKWLIQKHPETLLKREKGSVEWISLAPNDQYDISYEYAMNNSELSWRILWEAAKDGKEVVLNEDPKNVFAIAGQILYGTGNLTKQSQIDAAAKELKTLLSYKNVGLQGDSLIQTASEAQFDFAVMYNGDLSYANVIYNGEDTLETDDEEDEYKLFSVSPKADDEPKVYYLYGRPNGNVETKSDEEGSKPTKQTTNIYSDNMVMSRYSKHKDLAYDFINFFIEHAEDISESTGTPTGFVETMESATAAPEGSKEEGTYYRYSDMFKPIILHKNGGNGKPAYDDMWLEPFFNNLLDPKLIDAYNTLRAGKQ
>NZ_CP024969.1|WP_100679670.1|647810_648806_-|ABC-transporter-permease
MAKKDKKISVAFDQEQLESAIDNEIARENKIKVRQKLKEINKTLGKTKLFNFAKGKAWPILLPFFIVMILLVIIPILSIVVYSLVQPSGDLKMFEVSLEKFIRLFKNGNIMMSMGLTIAYAFIASLFCIILGYPIALIMSEMRSKILAKNMWLLITMPMWISMLLKVLGLRSLFLIMAPSALGTQIAIIIGMTYMFIPFAITPIYDALDSRRRDIEEAAMDLGCSKYKTFWGITFRSSMPGVITAITLVLLQAATSLIVVQYMGNGKINLITSIIESYFFKGSDFGFGAAISVVLAALVFLLMMVSKFFTNKFEKKGAKSWKDSSDQLTLL
>NZ_CP024969.1|WP_100679671.1|648808_649861_-|ABC-transporter-ATP-binding-protein
MENNILELRNVTKDYDGKVVLKGIDLNIKEGEFITLLGPSGCGKTTTLRIVAGFEKPNSGQIMFEGKDLLPIPINKRQFNTIFQSYALFPHLNVFDNIAFGLRTKKTKKDILQREVLKQIRQVGLEGFEDRNINDLSGGQKQRVAIARALVMKPKVLLLDEPLAALDVQLRQHMREELKRLQREIGITFLMVSHDQEEALSISDRVVVMNEGSIQQIGTPEDIYNEPENLWVAKFIGQSNIIEDGVFIEDNKVQIDGKAFVCDDTNFGENEKSIDIVIRPEDIEIKKVNTGFFNASVMHTTFKGVHWELLVETTKKRIWKIHTTQTFKVDDKVSIKWNDEAIHVMWKEVE
>NZ_CP024969.1|WP_100679672.1|650214_651054_-|HAD-family-hydrolase
MIKMIAIDIDGTVFDHKTGIHQKTKDAILKAKELNIPVVIATGRNLTTIHHIAKELQIEDSLYPFVSQNGGQSFSFNHENSKEIKIYYTVSFEPKLTKELFDCANKNKIRIFAYSEDEKYAYCNKKISAFRTFMKFKTKRQKLISYNSKTDFNRLKVSKFICFGKSKHMEKFRQFAEKNDISIFAFSYVSESHSNIELNPNGVDKAYGLKYVTEQLNIDPKDVIYFGDGENDMAAIKWAGKGVAMKNAKDLVKEVADDVTALTAGEGGVGDYLFKNIFK
>NZ_CP024969.1|WP_100679673.1|651170_651422_-|IS3-family-transposase
MIISLSNPGLSLDNAACETFFSQLKTEEPEVLKQKDFNRIKEIIENYINYYNLIRIRIKSKNPPAYNYLKQAKSHFTNEMTYY
>NZ_CP024969.1|WP_100679674.1|651449_651731_-|DDE-type-integrase/transposase/recombinase
MNRKFKNIVNRKWNDYKQDELWVTDVSYIPCNKGYVYLSVLKDVASGFIVGHTVSKINDNKIYKDTWKSAEKFHDSSKVKIIHSDNGYQYTSI
>NZ_CP024969.1|WP_100679675.1|651714_651957_-|IS3-family-transposase
MPEYQIKFDKTFAYEVESIFKQNNARYGYPRIQIVLENKGIKVSCSKVYRYMKLLNLYSNLRIKKFIKKPKENKKHESKI
>NZ_CP024969.1|WP_100679676.1|652070_652433_-|transposase
MANIKGNKSIILSTQEKEIIVKEHFEKQMTFSQLSKKYNVSYSAIRKWCLDYEIYGLSALESQTGKMNVKQKGKAKPSSRSLDSKDREIAMLKKQLKQANMERDIWKKFDELMRESQKKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP024969_2	2.1\|640751\|34\|NZ_CP024969\|CRISPRCasFinder	640751-640784	34	MN694421	Marine virus AFVG_250M313, complete genome	6468-6501	8	0.765
NZ_CP024969_2	2.1\|640751\|34\|NZ_CP024969\|CRISPRCasFinder	640751-640784	34	MN693907	Marine virus AFVG_250M314, complete genome	28874-28907	8	0.765

1. spacer 2.1|640751|34|NZ_CP024969|CRISPRCasFinder matches to MN694421 (Marine virus AFVG_250M313, complete genome) position: , mismatch: 8, identity: 0.765

---attgtataggctaaaaagtgttttattaaattaa	CRISPR spacer
agatttgt---ggctaaaaagtcttttaataaattgt	Protospacer
    ****   *********** ***** ******.

2. spacer 2.1|640751|34|NZ_CP024969|CRISPRCasFinder matches to MN693907 (Marine virus AFVG_250M314, complete genome) position: , mismatch: 8, identity: 0.765

---attgtataggctaaaaagtgttttattaaattaa	CRISPR spacer
agatttgt---ggctaaaaagtcttttaataaattgt	Protospacer
    ****   *********** ***** ******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

60131 : 112218

Mycoplasma_phage(20.0%)

tRNA,integrase,transposase

attL 107745:107762|attR 118816:118833

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100679224.1\|60131_60419_+\|transposase	transposase	NA	NA	NA	NA
WP_100679225.1\|60713_61034_+	hypothetical protein	NA	NA	NA	NA
WP_100679226.1\|61054_61546_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_100679227.1\|61535_61841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100679228.1\|61957_62557_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_100679207.1\|62616_63582_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	6.1e-21	32.0
WP_100679229.1\|63714_65253_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	3.4e-50	29.8
WP_100679230.1\|65443_66397_-	5'-3' exonuclease	S5VMA8	Pseudomonas_phage	1.5e-19	27.0
WP_167373310.1\|66456_67017_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.4e-22	39.0
WP_100679231.1\|67096_69928_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_100679232.1\|69989_71993_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_167373346.1\|71989_74842_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	8.6e-273	51.9
WP_100679234.1\|74825_75932_+	dihydrofolate synthase	NA	NA	NA	NA
WP_100679235.1\|75947_76622_+	folate family ECF transporter S component	NA	NA	NA	NA
WP_100679236.1\|76710_77643_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_100679237.1\|77650_79249_+	diacylglyceryl transferase	NA	NA	NA	NA
WP_100679238.1\|79232_80168_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.2e-68	44.0
WP_100679239.1\|80196_81600_+	diacylglyceryl transferase	NA	NA	NA	NA
WP_100679240.1\|81622_82576_+	DNA-binding protein WhiA	NA	NA	NA	NA
WP_100679241.1\|82634_82871_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100679242.1\|82942_83209_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_100679243.1\|83233_86854_+	ABC transporter permease	NA	NA	NA	NA
WP_100679244.1\|86862_88209_+	peptidase M17	Q6GYZ8	Mycoplasma_phage	2.7e-75	44.3
WP_100679245.1\|88299_89643_+	peptidase M17	Q6GYZ8	Mycoplasma_phage	1.2e-75	47.4
WP_100679246.1\|89697_91050_+	peptidase M17	Q6GYZ8	Mycoplasma_phage	1.4e-63	39.1
WP_100679247.1\|91094_91769_+	hypothetical protein	NA	NA	NA	NA
WP_100679248.1\|91975_93265_+	adenylosuccinate synthase	L7Y4J5	Megavirus	5.1e-63	34.5
WP_100679249.1\|93413_94712_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	30.6
WP_100679250.1\|94747_95791_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.4e-34	30.6
WP_100679251.1\|95807_96368_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_100679252.1\|96400_97144_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_100679253.1\|97454_98864_+	hypothetical protein	NA	NA	NA	NA
WP_100679254.1\|98931_99456_-	hypothetical protein	NA	NA	NA	NA
WP_100679255.1\|99621_100479_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_100679256.1\|100541_100997_+	single-stranded DNA-binding protein	B7T0A5	Staphylococcus_virus	4.2e-12	42.2
WP_011182979.1\|101023_101254_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_100679257.1\|101394_101838_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_100679258.1\|101839_103186_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.6e-72	37.7
WP_100679259.1\|103252_104674_+	lipoprotein	NA	NA	NA	NA
WP_100679260.1\|104778_105696_+	hypothetical protein	NA	NA	NA	NA
WP_100679261.1\|105711_107037_+\|tRNA	cysteine--tRNA ligase	H2EDD6	Moumouvirus	3.3e-49	32.4
WP_100679262.1\|107038_107767_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
107745:107762	attL	NA	NA	NA	NA
WP_011182986.1\|107844_108009_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_167373347.1\|108035_108344_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_100679264.1\|108356_108983_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA
WP_100679265.1\|109113_110874_+	ribonuclease J	NA	NA	NA	NA
WP_100679266.1\|110957_111320_+\|transposase	transposase	NA	NA	NA	NA
WP_100679267.1\|111433_111772_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_100679268.1\|111720_111939_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_100679269.1\|111966_112218_+\|transposase	IS3 family transposase	NA	NA	NA	NA
118816:118833	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP024969

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection