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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024954 Lactococcus lactis subsp. lactis strain F44 chromosome, complete genome 4 crisprs cas3,DEDDh,csa3,DinG 0 2 8 0

Results visualization

1. NZ_CP024954
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024954_1 1416029-1416127 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024954_2 1647647-1648672 Orphan NA
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024954_3 1894925-1895019 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024954_4 1915607-1915703 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_015902 Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF50, complete sequence 22060-22104 1 0.978
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016720 Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence 44302-44346 1 0.978
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016726 Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence 74034-74078 1 0.978
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_009435 Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence 53915-53959 1 0.978
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_019430 Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence 41020-41064 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP043524 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence 4680-4724 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_AP018502 Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence 42862-42906 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016708 Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence 40739-40783 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_015862 Lactococcus lactis subsp. lactis plasmid pIL4, complete sequence 18976-19020 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 CP029293 Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6 20204-20248 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016701 Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence 5520-5564 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016701 Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence 35869-35913 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016735 Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence 45132-45176 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016715 Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence 50680-50724 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016744 Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence 53171-53215 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016747 Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1A, complete sequence 41871-41915 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 CP016714 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence 54372-54416 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP031539 Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence 41071-41115 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016738 Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence 38097-38141 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_017493 Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence 40354-40398 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016694 Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence 47278-47322 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_017478 Lactococcus lactis plasmid pSK11L, complete sequence 38299-38343 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NC_008506 Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence 16340-16384 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016733 Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence 38148-38192 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP051519 Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence 12670-12714 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_MF150536 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence 38026-38070 2 0.956
NZ_CP024954_4 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder 1915633-1915677 45 NZ_CP016687 Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence 42562-42606 2 0.956
NZ_CP024954_2 2.13|1648565|30|NZ_CP024954|CRT 1648565-1648594 30 NZ_CP047261 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence 288465-288494 7 0.767

1. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_015902 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pVF50, complete sequence) position: , mismatch: 1, identity: 0.978

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgccaatattcctccaacaaatctc	Protospacer
********************************************.

2. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016720 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence) position: , mismatch: 1, identity: 0.978

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgccaatattcctccaacaaatctc	Protospacer
********************************************.

3. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 1, identity: 0.978

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgccaatattcctccaacaaatctc	Protospacer
********************************************.

4. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_009435 (Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence) position: , mismatch: 1, identity: 0.978

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgccaatattcctccaacaaatctc	Protospacer
********************************************.

5. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_019430 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

6. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP043524 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

7. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_AP018502 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

8. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016708 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

9. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_015862 (Lactococcus lactis subsp. lactis plasmid pIL4, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

10. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

11. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016701 (Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

12. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016701 (Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

13. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016735 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

14. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

15. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016744 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

16. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016747 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1A, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

17. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to CP016714 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

18. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP031539 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

19. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016738 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

20. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_017493 (Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

21. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016694 (Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

22. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_017478 (Lactococcus lactis plasmid pSK11L, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

23. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NC_008506 (Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

24. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016733 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

25. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP051519 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

26. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_MF150536 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

27. spacer 4.1|1915633|45|NZ_CP024954|CRISPRCasFinder matches to NZ_CP016687 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence) position: , mismatch: 2, identity: 0.956

catgcacccgctaaacttcgtgccaatattcctccaacaaatctt	CRISPR spacer
catgcacccgctaaacttcgtgcaaatattcctccaacaaatctc	Protospacer
*********************** ********************.

28. spacer 2.13|1648565|30|NZ_CP024954|CRT matches to NZ_CP047261 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence) position: , mismatch: 7, identity: 0.767

tattgaatcggacgttgaatcggacgttga	CRISPR spacer
cgttgaatcggacgttcaatcggtccatgt	Protospacer
..************** ****** *  ** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 371149 : 383278 14 Streptococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_2 829535 : 839838 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 1026239 : 1049688 21 Staphylococcus_phage(21.43%) NA NA
DBSCAN-SWA_4 1454869 : 1490533 42 Lactococcus_phage(54.55%) protease,tail,portal,holin,integrase,terminase,capsid attL 1448049:1448108|attR 1487123:1487223
DBSCAN-SWA_5 1588361 : 1598664 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1818057 : 1827916 9 Prochlorococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_7 1978640 : 2042107 73 Lactococcus_phage(70.45%) tail,portal,head,plate,tRNA,terminase,capsid NA
DBSCAN-SWA_8 2342546 : 2351207 16 Lactococcus_phage(90.91%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage