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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP024997 Escherichia coli strain S17-13 chromosome, complete genome 5 crisprs cas3,DEDDh,DinG,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK 0 6 11 0

Results visualization

1. NZ_CP024997
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024997_1 169922-170071 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024997_2 440348-440463 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024997_3 650191-650344 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024997_4 3536636-3537030 Unclear I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP024997_5 4070186-4070325 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP024997_3 3.1|650244|48|NZ_CP024997|CRISPRCasFinder 650244-650291 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4089-4136 3 0.938
NZ_CP024997_3 3.1|650244|48|NZ_CP024997|CRISPRCasFinder 650244-650291 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4088-4135 3 0.938
NZ_CP024997_3 3.1|650244|48|NZ_CP024997|CRISPRCasFinder 650244-650291 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4088-4135 3 0.938
NZ_CP024997_3 3.1|650244|48|NZ_CP024997|CRISPRCasFinder 650244-650291 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4088-4135 3 0.938
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51276-51307 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45716-45747 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51276-51307 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45716-45747 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51276-51307 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51276-51307 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51276-51307 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29015-29046 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78292-78323 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39594 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51933 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18560-18591 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49240-49271 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81434-81465 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28916-28947 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36182-36213 7 0.781
NZ_CP024997_4 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT 3536726-3536757 32 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32230-32261 7 0.781
NZ_CP024997_5 5.1|4070235|42|NZ_CP024997|CRISPRCasFinder 4070235-4070276 42 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30214-30255 7 0.833
NZ_CP024997_4 4.3|3536787|32|NZ_CP024997|CRISPRCasFinder,CRT 3536787-3536818 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1417960-1417991 8 0.75
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51275-51307 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45715-45747 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51275-51307 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45715-45747 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51275-51307 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51275-51307 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51275-51307 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29014-29046 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78291-78323 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18559-18591 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49239-49271 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81433-81465 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28915-28947 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36181-36213 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32229-32261 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39595 8 0.758
NZ_CP024997_4 4.8|3536726|33|NZ_CP024997|PILER-CR 3536726-3536758 33 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51934 8 0.758
NZ_CP024997_5 5.1|4070235|42|NZ_CP024997|CRISPRCasFinder 4070235-4070276 42 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24899-24940 8 0.81
NZ_CP024997_5 5.1|4070235|42|NZ_CP024997|CRISPRCasFinder 4070235-4070276 42 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24786-24827 9 0.786
NZ_CP024997_4 4.6|3536970|32|NZ_CP024997|CRISPRCasFinder,CRT 3536970-3537001 32 NZ_CP030933 Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence 51062-51093 10 0.688

1. spacer 3.1|650244|48|NZ_CP024997|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

2. spacer 3.1|650244|48|NZ_CP024997|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

3. spacer 3.1|650244|48|NZ_CP024997|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

4. spacer 3.1|650244|48|NZ_CP024997|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

5. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

6. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

7. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

8. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

9. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

10. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

11. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

12. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

13. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

14. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

15. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

16. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

17. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

18. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

19. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

20. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

21. spacer 4.2|3536726|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

22. spacer 5.1|4070235|42|NZ_CP024997|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
gcgtaggccagataaggcgtttacgccgcatccggcatttgt	Protospacer
.******.*********.****************.*  .***

23. spacer 4.3|3536787|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** ******* 

24. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

25. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

26. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

27. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

28. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

29. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

30. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

31. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

32. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

33. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

34. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

35. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

36. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

37. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

38. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

39. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

40. spacer 4.8|3536726|33|NZ_CP024997|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 8, identity: 0.758

--gccgtctgcctccagcccagccctggatatttc	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacgt	Protospacer
  ***  ****** ****.************ . .

41. spacer 5.1|4070235|42|NZ_CP024997|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaat	Protospacer
 .*******.*******.******************  * .*

42. spacer 5.1|4070235|42|NZ_CP024997|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaac	Protospacer
 .*******.*******.******************  * ..

43. spacer 4.6|3536970|32|NZ_CP024997|CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

actaaacttaatgatggccgttacagcgtgga	CRISPR spacer
gagtaacttaatgatgggcgtcacagcagcgg	Protospacer
.   ************* ***.*****.  *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 143625 : 196415 51 Vibrio_phage(23.08%) protease,holin,transposase,integrase,tRNA attL 160678:160693|attR 186794:186809
DBSCAN-SWA_2 623490 : 671308 44 Streptococcus_phage(25.0%) capsid,plate,transposase NA
DBSCAN-SWA_3 1796673 : 1851891 72 Escherichia_phage(82.26%) tail,holin,lysis,tRNA,terminase NA
DBSCAN-SWA_4 2058041 : 2112717 74 Enterobacteria_phage(36.0%) tail,transposase,integrase,lysis,head,portal,terminase,capsid attL 2084984:2084999|attR 2117413:2117428
DBSCAN-SWA_5 2672958 : 2682399 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_6 3078973 : 3126914 52 Escherichia_phage(43.75%) tail,holin,integrase,terminase attL 3077235:3077251|attR 3127970:3127986
DBSCAN-SWA_7 3189444 : 3274954 101 Enterobacteria_phage(78.18%) protease,tail,holin,integrase,tRNA,portal,plate,terminase,capsid attL 3200581:3200597|attR 3278621:3278637
DBSCAN-SWA_8 3284398 : 3400842 116 Enterobacteria_phage(56.06%) protease,tail,holin,integrase,transposase,head,portal,plate,terminase,capsid attL 3340064:3340082|attR 3355386:3355404
DBSCAN-SWA_9 3490239 : 3503422 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_10 3807770 : 3819052 10 Stx2-converting_phage(42.86%) transposase NA
DBSCAN-SWA_11 4578890 : 4600685 28 Morganella_phage(33.33%) integrase attL 4571947:4571961|attR 4594159:4594173
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage