CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019489	Bartonella sp. 1-1C chromosome, complete genome	0 crisprs	DEDDh	0	0	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

101988 : 111749

Iodobacteriophage(22.22%)

integrase

attL 98372:98390|attR 116900:116918

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
98372:98390	attL	NA	NA	NA	NA
WP_100692856.1\|101988_102468_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.4e-47	63.4
WP_035006123.1\|102457_102790_-	hypothetical protein	F8TV45	EBPR_siphovirus	7.7e-24	51.5
WP_148664920.1\|104040_104334_-	hypothetical protein	NA	NA	NA	NA
WP_100692858.1\|104411_104726_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100692860.1\|104964_105345_+	hypothetical protein	NA	NA	NA	NA
WP_100692861.1\|105402_106143_+	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	7.0e-25	37.9
WP_100692862.1\|106225_107017_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	9.7e-41	39.7
WP_100692863.1\|107018_107642_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	3.5e-46	45.9
WP_100692864.1\|107758_107977_+	hypothetical protein	NA	NA	NA	NA
WP_100693915.1\|107984_109028_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	1.2e-30	29.3
WP_100692865.1\|109227_109431_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_100692866.1\|109509_110133_-	exonuclease	A0A0U2BXF3	Paracoccus_phage	1.0e-45	45.9
WP_100692867.1\|110134_110926_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	7.4e-41	39.7
WP_100692861.1\|111008_111749_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	7.0e-25	37.9
116900:116918	attR	NA	NA	NA	NA

DBSCAN-SWA_2

377376 : 445433

Acidithiobacillus_phage(19.51%)

tRNA,capsid,tail,terminase,integrase,portal,protease,head,plate

attL 382102:382118|attR 447906:447922

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100693019.1\|377376_378507_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_100693020.1\|378509_379433_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_100693021.1\|379562_381044_+	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	8.5e-22	28.4
WP_100693022.1\|381118_381994_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
382102:382118	attL	NA	NA	NA	NA
WP_100693023.1\|382269_383391_+	AAA family ATPase	A0A291LA07	Bordetella_phage	7.4e-103	52.9
WP_100693024.1\|383470_384205_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_100693025.1\|384702_385119_+	hypothetical protein	Q94M22	Bartonella_quintana_phage	1.9e-11	36.0
WP_158521540.1\|385175_385514_+	porin family protein	O11861	Bartonella_henselae_phage	6.4e-18	45.8
WP_148664923.1\|386935_388561_+	BID domain-containing T4SS effector	NA	NA	NA	NA
WP_100693029.1\|389816_390011_-	hypothetical protein	NA	NA	NA	NA
WP_100693030.1\|390677_391589_+	YopJ family type III secretion system effector serine/threonine acetyltransferase	NA	NA	NA	NA
WP_100693928.1\|392913_394077_+\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	2.9e-73	40.0
WP_100693031.1\|394123_396190_-	hypothetical protein	NA	NA	NA	NA
WP_100693032.1\|396580_396856_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_100693929.1\|396868_397150_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_100693034.1\|397351_397579_-	hypothetical protein	NA	NA	NA	NA
WP_100693035.1\|397575_398238_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	9.6e-50	64.9
WP_100693036.1\|398538_399447_+	type II restriction endonuclease	NA	NA	NA	NA
WP_100693037.1\|399448_400372_+	DNA cytosine methyltransferase	Q6DMX0	Streptococcus_phage	3.1e-107	63.4
WP_100693038.1\|400383_401691_-	late control protein	K4HZC6	Acidithiobacillus_phage	2.4e-68	37.9
WP_100693039.1\|401687_401912_-\|tail	phage tail protein	E5FFI3	Burkholderia_phage	9.2e-05	42.1
WP_100693040.1\|401908_402289_-\|tail	phage tail protein	D5LGY3	Escherichia_phage	9.8e-23	42.3
WP_100693041.1\|402294_404178_-\|tail	phage tail tape measure protein	A0A0E3U2N9	Fusobacterium_phage	3.5e-12	25.9
WP_100693930.1\|404174_404291_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_100693042.1\|404287_404572_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_100693043.1\|404573_405080_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	2.4e-29	40.4
WP_100693044.1\|405079_406315_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	9.3e-131	52.4
WP_100693045.1\|406705_407443_+	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.6e-50	42.4
WP_100693046.1\|407439_407718_+	hypothetical protein	NA	NA	NA	NA
WP_100693047.1\|407888_408140_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_100693048.1\|408132_408519_+	hypothetical protein	NA	NA	NA	NA
WP_100693049.1\|408528_408825_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_100693050.1\|409071_409314_-	hypothetical protein	NA	NA	NA	NA
WP_100693051.1\|409325_410435_-	hypothetical protein	NA	NA	NA	NA
WP_100693052.1\|410448_413592_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	3.7e-152	34.7
WP_100693053.1\|413593_414700_-\|tail	phage tail protein	K4I1F8	Acidithiobacillus_phage	9.5e-18	34.2
WP_100693054.1\|414699_415527_-\|plate	baseplate assembly protein	A0A219VH98	Ochrobactrum_phage	9.5e-39	34.2
WP_100693055.1\|415523_415865_-\|plate	baseplate assembly protein W	Q75QM0	Wolbachia_phage	6.7e-31	59.6
WP_100693056.1\|415861_416551_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	3.1e-19	37.7
WP_100693057.1\|416543_417068_-	hypothetical protein	NA	NA	NA	NA
WP_100693058.1\|417144_417444_+	hypothetical protein	NA	NA	NA	NA
WP_100693059.1\|417430_417703_+	hypothetical protein	NA	NA	NA	NA
WP_100693060.1\|417739_418057_+	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	2.2e-07	40.6
WP_100693061.1\|418099_418246_+	hypothetical protein	NA	NA	NA	NA
WP_100693062.1\|418288_418567_-	hypothetical protein	NA	NA	NA	NA
WP_100693063.1\|418563_419295_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	4.9e-47	40.2
WP_100693064.1\|419588_420122_-	phage antirepressor Ant	A0A0P0ZDY7	Stx2-converting_phage	1.0e-30	45.5
WP_100693065.1\|420423_421011_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	3.3e-25	42.4
WP_100693066.1\|421414_422311_-	hypothetical protein	A0A076G7L7	Bacillus_phage	5.5e-08	50.0
WP_100693067.1\|422341_422692_-	hypothetical protein	NA	NA	NA	NA
WP_100693068.1\|422693_423770_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	9.4e-55	34.9
WP_100693069.1\|423782_424151_-\|head	head decoration protein	A0A0A8IL52	Aurantimonas_phage	3.0e-13	48.9
WP_100693932.1\|424147_424414_-	hypothetical protein	NA	NA	NA	NA
WP_100693931.1\|424410_425475_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	5.3e-66	48.1
WP_100693070.1\|425464_427003_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	2.4e-96	41.2
WP_100693071.1\|427002_427251_-	hypothetical protein	NA	NA	NA	NA
WP_100693072.1\|427254_429183_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	1.6e-166	52.4
WP_100693073.1\|429213_429765_-	hypothetical protein	NA	NA	NA	NA
WP_100693074.1\|429858_430068_+	hypothetical protein	NA	NA	NA	NA
WP_100693075.1\|430140_430419_-	hypothetical protein	NA	NA	NA	NA
WP_100693076.1\|430415_431147_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	4.2e-46	41.1
WP_100693077.1\|432544_433126_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	2.9e-10	33.1
WP_100693078.1\|433122_433470_-	hypothetical protein	NA	NA	NA	NA
WP_100693079.1\|434021_434444_+	HicB family protein	A0A2H4JFV9	uncultured_Caudovirales_phage	4.4e-16	35.0
WP_100693080.1\|434447_434996_-	hypothetical protein	NA	NA	NA	NA
WP_100693081.1\|435006_435453_-	single-stranded DNA-binding protein	A0A1B1IVU7	uncultured_Mediterranean_phage	3.7e-29	45.9
WP_100693082.1\|435647_435947_+	hypothetical protein	NA	NA	NA	NA
WP_100693083.1\|435924_436230_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	9.6e-05	38.6
WP_100693084.1\|436360_436552_+	hypothetical protein	NA	NA	NA	NA
WP_100693085.1\|436612_437041_+	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	1.8e-12	36.7
WP_100693086.1\|437037_437472_-	hypothetical protein	NA	NA	NA	NA
WP_100693914.1\|437634_437997_-	hypothetical protein	NA	NA	NA	NA
WP_100693087.1\|438031_439219_-	DUF1376 domain-containing protein	NA	NA	NA	NA
WP_100693088.1\|439208_439688_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.5e-47	63.4
WP_035006123.1\|439677_440010_-	hypothetical protein	F8TV45	EBPR_siphovirus	7.7e-24	51.5
WP_100693089.1\|440142_440919_+	hypothetical protein	NA	NA	NA	NA
WP_100692871.1\|440920_441358_-	hypothetical protein	NA	NA	NA	NA
WP_100693090.1\|441347_441551_-	hypothetical protein	NA	NA	NA	NA
WP_100693933.1\|441927_442545_+	transcriptional regulator	K7PH71	Enterobacterial_phage	7.9e-06	27.7
WP_100693091.1\|442755_443136_+	hypothetical protein	NA	NA	NA	NA
WP_100693092.1\|443193_443934_+	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	2.7e-24	38.9
WP_100692867.1\|444016_444808_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	7.4e-41	39.7
WP_100693093.1\|444809_445433_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	6.1e-46	45.9
447906:447922	attR	NA	NA	NA	NA

DBSCAN-SWA_3

695689 : 702466

Hokovirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100693282.1\|695689_697231_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.4e-96	38.9
WP_100693283.1\|697294_698350_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	4.5e-09	26.7
WP_100693284.1\|698346_698988_-	dTMP kinase	M1PSC7	Streptococcus_phage	7.4e-31	39.3
WP_100693285.1\|699030_700203_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	4.4e-05	31.0
WP_100693286.1\|700303_701146_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.2e-20	55.1
WP_100693287.1\|701818_702466_+	LemA family protein	A0A1X9IGG1	Lactococcus_phage	1.7e-11	31.6

DBSCAN-SWA_4

771320 : 781160

uncultured_Mediterranean_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100693336.1\|771320_772451_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.0e-99	54.0
WP_100693337.1\|772867_773380_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.7e-47	59.6
WP_100693949.1\|773384_773984_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.3e-42	53.2
WP_100693338.1\|773986_774493_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.2e-22	34.4
WP_100693339.1\|774526_777295_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	5.3e-102	33.9
WP_035006333.1\|777534_778023_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	8.1e-46	60.7
WP_100693340.1\|778247_781160_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.6

DBSCAN-SWA_5

1220014 : 1284445

Sinorhizobium_phage(13.33%)

holin,tRNA,capsid,tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100693659.1\|1220014_1221502_-\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	7.7e-31	26.4
WP_100693646.1\|1222094_1223192_+	DUF3792 family protein	NA	NA	NA	NA
WP_100693647.1\|1230109_1230292_+	hypothetical protein	NA	NA	NA	NA
WP_100693660.1\|1230566_1232555_+	M23 family metallopeptidase	A0A2P1JY73	Gordonia_phage	1.3e-17	40.3
WP_100693661.1\|1233111_1234530_-	sensor histidine kinase	NA	NA	NA	NA
WP_100693662.1\|1234751_1235306_-	RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	3.6e-18	38.0
WP_100693663.1\|1235302_1235518_-	hypothetical protein	NA	NA	NA	NA
WP_100693664.1\|1235680_1236475_+	response regulator	NA	NA	NA	NA
WP_100693665.1\|1236490_1237504_+	histidine kinase	NA	NA	NA	NA
WP_100693666.1\|1237759_1238053_+	hypothetical protein	NA	NA	NA	NA
WP_100693667.1\|1238182_1238608_+	hypothetical protein	NA	NA	NA	NA
WP_100693668.1\|1238670_1239378_-	DUF4167 domain-containing protein	NA	NA	NA	NA
WP_100693669.1\|1240129_1241047_+	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_100693670.1\|1241290_1241740_-	hypothetical protein	NA	NA	NA	NA
WP_100693972.1\|1242212_1242434_-	hypothetical protein	NA	NA	NA	NA
WP_100693671.1\|1242460_1243123_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	2.6e-47	63.6
WP_100693973.1\|1243346_1243610_-	hypothetical protein	NA	NA	NA	NA
WP_100693672.1\|1244147_1245137_-\|tail	tail fiber protein	D5LGZ0	Escherichia_phage	4.8e-21	39.4
WP_100693673.1\|1245142_1246258_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_100693974.1\|1246163_1246745_-	hypothetical protein	NA	NA	NA	NA
WP_100693674.1\|1247137_1248601_-	hypothetical protein	D6PEY0	uncultured_phage	4.6e-44	27.0
WP_100693675.1\|1248601_1249318_-	hypothetical protein	NA	NA	NA	NA
WP_100693676.1\|1249385_1250516_-\|capsid	N4-gp56 family major capsid protein	I6NV37	Burkholderia_virus	9.6e-42	33.2
WP_100693677.1\|1250642_1251512_-	hypothetical protein	NA	NA	NA	NA
WP_100693678.1\|1251716_1253537_-\|portal	phage portal protein	A0A248SKZ2	Klebsiella_phage	3.5e-33	23.7
WP_100693679.1\|1253536_1254865_-\|terminase	PBSX family phage terminase large subunit	A0A088F6U9	Sulfitobacter_phage	2.8e-141	56.7
WP_100693975.1\|1256473_1256818_-	hypothetical protein	NA	NA	NA	NA
WP_100693680.1\|1257852_1260444_-	ATP-dependent chaperone ClpB	A0A2I7SAX5	Vibrio_phage	7.7e-119	34.5
WP_158521548.1\|1260623_1260788_-	hypothetical protein	NA	NA	NA	NA
WP_100693976.1\|1261111_1261291_-	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_100693681.1\|1261410_1262061_-	septum formation protein Maf	NA	NA	NA	NA
WP_013545481.1\|1262272_1262491_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_100693682.1\|1262975_1263485_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.2e-17	38.1
WP_100693683.1\|1263571_1264687_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_004863016.1\|1265478_1265604_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_100693684.1\|1265603_1266464_+	hypothetical protein	NA	NA	NA	NA
WP_100693685.1\|1266758_1267367_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_100693977.1\|1267385_1268249_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
WP_100693978.1\|1268627_1269920_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_100693686.1\|1270726_1271344_-	exonuclease	Q9MC71	Pseudomonas_phage	2.4e-34	45.4
WP_100693687.1\|1271556_1271748_-	hypothetical protein	NA	NA	NA	NA
WP_100693688.1\|1271758_1272148_-	hypothetical protein	NA	NA	NA	NA
WP_100693689.1\|1272453_1272774_-	helix-turn-helix transcriptional regulator	A0A2L0V128	Agrobacterium_phage	1.3e-20	53.6
WP_100693690.1\|1273231_1274491_+	YdaU family protein	A0A076GD06	Sinorhizobium_phage	3.7e-18	40.1
WP_100693691.1\|1276676_1277282_+	hypothetical protein	NA	NA	NA	NA
WP_100693692.1\|1278119_1278728_+	DedA family protein	NA	NA	NA	NA
WP_100693693.1\|1278740_1279295_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_158521549.1\|1279656_1279800_-	hypothetical protein	NA	NA	NA	NA
WP_100693694.1\|1280011_1280809_+	hypothetical protein	NA	NA	NA	NA
WP_100693695.1\|1281204_1281756_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	3.3e-35	51.6
WP_100693696.1\|1281944_1282421_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_100693697.1\|1282401_1283226_-	biopolymer transporter ExbB	NA	NA	NA	NA
WP_100693698.1\|1283683_1284004_+	DUF883 family protein	NA	NA	NA	NA
WP_100693699.1\|1284007_1284445_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage