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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP025043 Streptococcus suis strain AH681 chromosome, complete genome 4 crisprs csa3,DinG,RT,WYL,cas3,DEDDh 2 3 11 1

Results visualization

1. NZ_CP025043
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025043_1 736056-736175 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025043_2 878633-878714 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025043_3 957364-957441 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025043_4 2162949-2163101 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP025043_3 3.1|957387|32|NZ_CP025043|CRISPRCasFinder 957387-957418 32 NZ_CP025043.1 172905-172936 0 1.0
NZ_CP025043_4 4.1|2162996|59|NZ_CP025043|CRISPRCasFinder 2162996-2163054 59 NZ_CP025043.1 2059148-2059206 2 0.966
NZ_CP025043_4 4.1|2162996|59|NZ_CP025043|CRISPRCasFinder 2162996-2163054 59 NZ_CP025043.1 2323379-2323437 2 0.966

1. spacer 3.1|957387|32|NZ_CP025043|CRISPRCasFinder matches to position: 172905-172936, mismatch: 0, identity: 1.0

tgtagcgaactttgttcgctctatttccaact	CRISPR spacer
tgtagcgaactttgttcgctctatttccaact	Protospacer
********************************

2. spacer 4.1|2162996|59|NZ_CP025043|CRISPRCasFinder matches to position: 2059148-2059206, mismatch: 2, identity: 0.966

tagtcttttagtttacttttagtactaggcaacgagctgcaggctgtactggagtacgg	CRISPR spacer
tagtcttttagtttacttttagtactaggcaacgagctgcagacagtactggagtacgg	Protospacer
******************************************.* **************

3. spacer 4.1|2162996|59|NZ_CP025043|CRISPRCasFinder matches to position: 2323379-2323437, mismatch: 2, identity: 0.966

tagtcttttagtttacttttagtactaggcaacgagctgcaggctgtactggagtacgg	CRISPR spacer
tagtcttttagtttacttttagtactaggcaacgagctgtaggctgtactgaagtacgg	Protospacer
***************************************.***********.*******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP025043_4 4.1|2162996|59|NZ_CP025043|CRISPRCasFinder 2162996-2163054 59 NC_012923 Streptococcus suis BM407 plasmid pBM407, complete sequence 14791-14849 2 0.966
NZ_CP025043_2 2.1|878661|26|NZ_CP025043|CRISPRCasFinder 878661-878686 26 MK448489 Streptococcus satellite phage Javan428, complete genome 13041-13066 5 0.808
NZ_CP025043_2 2.1|878661|26|NZ_CP025043|CRISPRCasFinder 878661-878686 26 NZ_CP020413 Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence 9095-9120 5 0.808
NZ_CP025043_3 3.1|957387|32|NZ_CP025043|CRISPRCasFinder 957387-957418 32 MN270270 Streptococcus phage phi-SsuJS7_SSU0237, partial genome 5316-5347 6 0.812
NZ_CP025043_3 3.1|957387|32|NZ_CP025043|CRISPRCasFinder 957387-957418 32 MH059634 Dickeya phage Sucellus, complete genome 33674-33705 9 0.719

1. spacer 4.1|2162996|59|NZ_CP025043|CRISPRCasFinder matches to NC_012923 (Streptococcus suis BM407 plasmid pBM407, complete sequence) position: , mismatch: 2, identity: 0.966

tagtcttttagtttacttttagtactaggcaacgagctgcaggctgtactggagtacgg	CRISPR spacer
tagtcttttagtttacttttagtactaggcaacgagctgcagacagtactggagtacgg	Protospacer
******************************************.* **************

2. spacer 2.1|878661|26|NZ_CP025043|CRISPRCasFinder matches to MK448489 (Streptococcus satellite phage Javan428, complete genome) position: , mismatch: 5, identity: 0.808

aaaggttccccaaaccttttgtagca	CRISPR spacer
aaaggttccccaaaccttttgagttc	Protospacer
********************* . . 

3. spacer 2.1|878661|26|NZ_CP025043|CRISPRCasFinder matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

aaaggttccccaaaccttttgtagca	CRISPR spacer
aaaggttccccaaaccagttgtaaag	Protospacer
****************  *****. .

4. spacer 3.1|957387|32|NZ_CP025043|CRISPRCasFinder matches to MN270270 (Streptococcus phage phi-SsuJS7_SSU0237, partial genome) position: , mismatch: 6, identity: 0.812

tgtagcgaactttgttcgctctatttccaact	CRISPR spacer
tgatgcgaacgttgttcgctttatttccagcc	Protospacer
**  ****** *********.********.*.

5. spacer 3.1|957387|32|NZ_CP025043|CRISPRCasFinder matches to MH059634 (Dickeya phage Sucellus, complete genome) position: , mismatch: 9, identity: 0.719

tgtagcgaactttgttcgctctatttccaact	CRISPR spacer
tattgcgaactttgttgtctctatttcagcgg	Protospacer
*.* ************  ********* .   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 168300 : 248145 57 Staphylococcus_phage(33.33%) protease,bacteriocin,tRNA,transposase NA
DBSCAN-SWA_2 457817 : 523657 57 unidentified_phage(20.0%) protease,transposase,tRNA NA
DBSCAN-SWA_3 698278 : 718174 17 Streptococcus_phage(75.0%) NA NA
DBSCAN-SWA_4 736907 : 837304 105 Streptococcus_phage(83.58%) head,tail,terminase,transposase,portal,integrase,tRNA attL 795308:795325|attR 838637:838654
DBSCAN-SWA_5 1258390 : 1264804 12 Streptococcus_phage(100.0%) protease NA
DBSCAN-SWA_6 1277151 : 1332514 50 Lactococcus_phage(15.38%) integrase,tRNA,transposase attL 1273893:1273909|attR 1332129:1332145
DBSCAN-SWA_7 1421856 : 1430950 11 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 1482115 : 1492099 7 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_9 1550228 : 1609627 47 Erysipelothrix_phage(30.0%) protease,transposase,holin,tRNA NA
DBSCAN-SWA_10 1624079 : 1672400 52 Streptococcus_phage(68.18%) protease,transposase,tRNA NA
DBSCAN-SWA_11 1808412 : 1861924 59 Streptococcus_phage(18.75%) protease,transposase,tRNA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP025043.1|WP_029178291.1|171664_171892_+|hypothetical-protein 171664_171892_+ 75 aa aa NA NA NA 168300-248145 yes