CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP025035	Pseudomonas sp. SGAir0191 chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL,cas3,DinG,RT	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025035_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025035_1

2674232-2674337

Orphan

Consensus_repeat	Method
CCCAGCATTTCAGCTCCGCAGCTCATATCGCCGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025035_1

>merge|NZ_CP025035|1|2674232-2674337|CRISPRCasFinder
CCCAGCATTTCAGCTCCGCAGCTCATATCGCCGGGGCGCCGGACCGGCCGCGATAGGCTGCGCAGCAATCCCAGAATTTCAGCTCCGCAGCTCATATCGCCGGGGC

>NZ_CP025035|1|1|2674232-2674337|CRISPRCasFinder
CCCAGCATTTCAGCTCCGCAGCTCATATCGCCGGGGC	GCCGGACCGGCCGCGATAGGCTGCGCAGCAAT
CCCAGAATTTCAGCTCCGCAGCTCATATCGCCGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025035.2\|WP_100851608.1\|2677547_2678312_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025035.2\|WP_100851605.1\|2672838_2673297_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP025035.2\|WP_058603310.1\|2669800_2670139_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025035.2\|WP_058603318.1\|2676704_2677475_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NZ_CP025035.2\|WP_058603315.1\|2674571_2675033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025035.2\|WP_100851599.1\|2664529_2665156_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|239354
NZ_CP025035.2\|WP_058603480.1\|2681184_2681691_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP025035.2\|WP_027915726.1\|2665384_2665705_+\|DUF2388-domain-containing-protein	unknown	unknown	gnl\|CDD\|274137
NZ_CP025035.2\|WP_100851606.1\|2675164_2675656_+\|DUF1543-domain-containing-protein	unknown	unknown	gnl\|CDD\|369429
NZ_CP025035.2\|WP_100851610.1\|2679555_2679780_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025035.2\|WP_100851602.1\|2668388_2669639_+\|glycolate-oxidase-subunit-GlcF	unknown	unknown	gnl\|CDD\|236890
NZ_CP025035.2\|WP_100851607.1\|2675691_2676660_+\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|377624
NZ_CP025035.2\|WP_100851604.1\|2671645_2672842_-\|CynX/NimT-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340968
NZ_CP025035.2\|WP_100851609.1\|2678364_2678682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025035.2\|WP_100851603.1\|2670219_2671653_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP025035.2\|WP_100851600.1\|2665824_2667324_+\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|183043
NZ_CP025035.2\|WP_138031817.1\|2678791_2678980_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025035.2\|WP_100851601.1\|2667323_2668379_+\|glycolate-oxidase-subunit-GlcE	unknown	unknown	gnl\|CDD\|236893
NZ_CP025035.2\|WP_100851611.1\|2679901_2680963_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381317
NZ_CP025035.2\|WP_058603314.1\|2673490_2673928_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039

Protein	Function_ID	Function_description	E-value
NZ_CP025035.2\|WP_058603480.1\|2681184_2681691_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.85342e-06
NZ_CP025035.2\|WP_100851605.1\|2672838_2673297_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	7.82014e-33
NZ_CP025035.2\|WP_058603318.1\|2676704_2677475_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	7.1242e-76
NZ_CP025035.2\|WP_100851599.1\|2664529_2665156_-\|glutathione-S-transferase	gnl\|CDD\|239354	cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.	2.17335e-30
NZ_CP025035.2\|WP_027915726.1\|2665384_2665705_+\|DUF2388-domain-containing-protein	gnl\|CDD\|274137	TIGR02448, conserved_hypothetical_protein, conserverd hypothetical protein. This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.	3.28971e-32
NZ_CP025035.2\|WP_100851606.1\|2675164_2675656_+\|DUF1543-domain-containing-protein	gnl\|CDD\|369429	pfam07566, DUF1543, Domain of Unknown Function (DUF1543). This domain is found as 1-2 copies in a small family of proteins of unknown function.	2.8355e-19
NZ_CP025035.2\|WP_100851602.1\|2668388_2669639_+\|glycolate-oxidase-subunit-GlcF	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	0
NZ_CP025035.2\|WP_100851607.1\|2675691_2676660_+\|5'-nucleotidase	gnl\|CDD\|377624	pfam06189, 5-nucleotidase, 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).	1.44762e-156
NZ_CP025035.2\|WP_100851604.1\|2671645_2672842_-\|CynX/NimT-family-MFS-transporter	gnl\|CDD\|340968	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli cyanate transport protein CynX and similar proteins. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The gene encoding CynX is part of the cyn operon that also includes cynS, encoding cynase, which catalyzes the reaction of cyanate with bicarbonate to give ammonia and carbon dioxide, and cynT, which encodes a carbonic anhydrase. The CynX-like subfamily belongs to the 2-nitroimidazole and cyanate transporters like (NIMT/CynX-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.07449e-140
NZ_CP025035.2\|WP_100851603.1\|2670219_2671653_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.63716e-125
NZ_CP025035.2\|WP_100851600.1\|2665824_2667324_+\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	0
NZ_CP025035.2\|WP_100851601.1\|2667323_2668379_+\|glycolate-oxidase-subunit-GlcE	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	0
NZ_CP025035.2\|WP_100851611.1\|2679901_2680963_-\|aldo/keto-reductase	gnl\|CDD\|381317	cd19091, AKR_PsAKR, Polaromonas Sp. aldo-keto reductase and similar proteins. The prototype of this family is an uncharacterized aldo-keto reductase from Polaromonas sp.	1.23641e-166
NZ_CP025035.2\|WP_058603314.1\|2673490_2673928_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	7.75242e-27

>NZ_CP025035.2|WP_058603314.1|2673490_2673928_+|carboxymuconolactone-decarboxylase-family-protein
MQHRIDWSKQAPDAYKAMAALEQALTRTGLEHDLLELVRLRASQINGCAYCVNLHANDARKAGEREARLQTLCVWRETTYFTGRERAALAWVESLTRLADCGAPQGEYEALLEHFEPAEVVNLTLAIATINAWNRFGVGFAMVAG
>NZ_CP025035.2|WP_100851605.1|2672838_2673297_-|nucleoside-deaminase
MPEVRFMREALELARANIAAGGRPFGAVLVYQGQVVARGINEIHRSQDPTTHAEMQVIRQASQALGRARLDGAQVYASGHPCPMCLAAMHLCGISQAWFAYDNDEGQPYGLSTADLYAQMTRAPQQQSLPLRAFKPDDESGLYAQWQQANDQ
>NZ_CP025035.2|WP_100851604.1|2671645_2672842_-|CynX/NimT-family-MFS-transporter
MTVVWRAMLVVLLALNLRPILTSIGPLLEPMRISTGLGYQQAALLTALPVLCMGAVPLLHPWSRRWLSEHAGMLGGLAAIALACLWRLQLQSAWALVASAVLAGLGVAVVQGMMPGLVNRWFPGRLAGAMGLYSAALMSGGGLAAVLGPHLAEYSGQWQMGLEAWAAPAMLAMLAWLILRPRNIQSPVFKGNGGHWFGHRRAWLLAVYFGLINGGYTSMVAWLPAFYLEQGGSAQGGADLVGLMTIFQVLGALGLPLLLRRWVDRRPGLALALSIQLVGFMGLLMAPTAAPGLWVALIGFGLGACFSQSLTLTLEHLPTPAEAGRLAGFVQGIGFIITGCVPYIVGWLRALDGDFQSAWTVLTASVLTMLLVTIAFSPQSYAKALARPVPVDNVDALS
>NZ_CP025035.2|WP_100851603.1|2670219_2671653_+|PLP-dependent-aminotransferase-family-protein
MELHIRLEGRKGLAAQLYAQLRAGIECGHLAAGSQLPPSRLLAEQLGVSRKTVADAYARLTQDNLLSAVVGRGTFINALAPKRSAPPSALTLAGDASLRRWQSRATVLGQRHAQSGVRYDFIGGVASKALFPFDLWRSCLNYAVRRSQHHLQRHFPAQGLAELREVIAHHIAYARGVHCTADDILVCNGAQQALDLIARVLVEPGCKVAMEDPGYPPARQLFLALGAQLQGVPVDEEGLCVDQIAEGTRLIYVTPSHQFPLGMPMGETRRRALLARAAALGALIIEDDYDCEFRYLGPRADALQRLDTQGLVAYVGTFSKTLLPELRLGYAVLPEAVLKASCVAKQLSDWHSPTLLQWALARFVEQGHLNRHIRRCHEIYTARRDRVLQRLDDDLAPWLRAIPAEAGFHLSALAQTGFDVEHLVEQARKVDLGIYSLAPFFNETPVRPGLLMGFGAIEMLDIDPALDRLRDTLRRIS
>NZ_CP025035.2|WP_058603310.1|2669800_2670139_+|hypothetical-protein
MLANPHLLAELRSHLRELLTHDLANPDQDPHLSGVMFFCVTDEPSRQLIERIELLASEAFFDARGRAITHHMKAAVVEGVQIKRCRSAPADETRIRIILSGKGYITVSMARA
>NZ_CP025035.2|WP_100851602.1|2668388_2669639_+|glycolate-oxidase-subunit-GlcF
MQTNLSDSARTLERAEEAERILRACVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGQPATTSTQSHLDRCLSCRSCETTCPSGVRYHDLLDIGRAVVEQQVPRPLGQRLLRHGLRFAMVRPAVFKALLRTGQALRPWLPAQVQQKVPLQKAAGLMRPALRHPRRVLMLEGCVQPALSPATNAAAARLLDRLGISVTPAPAEGCCGAVDYHLNAQAQGLQRARRRIDAWWPAIEAGVEAIVIPASGCAAFVREYAHLLAADPAYAAKAARVSSLCRDLVEVLGDAPIEQLAVPAGRRLAFHCPCTLQHALKLGGAVEALLIRLGFTLTPVTDAHLCCGSAGTYSLTQPGLSRQLRDSRLDALERGQPDEIATANIGCQVHLNGAGRTAARHWVEIVEEALRHAEERAGANEG
>NZ_CP025035.2|WP_100851601.1|2667323_2668379_+|glycolate-oxidase-subunit-GlcE
MGTDQDASQALLEQVRQALDAGTPLRIQGSGSKAMIGHAVNGQVLDTRGHRGIVSYDPTELVLTARAGTPLRDIEAALQEKGQMLACEPPHLGPGATLGGMVAAGLSGPRRPWSGSVRDFVLGTQVITGQGSVLRFGGQVMKNVAGYDLSRLLAGSFGCLGVLTEVSLKVLPVPRHCVSLRLGMDRSQALATLTRWGSEPLPLSGACHDGQAVFVRLEGGEGSVASARRRLGGEYVDGEFWTQLREQRLAFFTQGSEPLWRVSLPLATGELQLPGPQWLDWAGAQRWLRTDAPAHVIHRIAEQAGGHALCLTPGQAPYPPLSEPLMRYHRSLKAQLDPKRIFNPGRLYPDL
>NZ_CP025035.2|WP_100851600.1|2665824_2667324_+|glycolate-oxidase-subunit-GlcD
MTMLYDEHVDGALPTVDRELLIQCLRDALPDLQVLHREEDLKPYECDGLAAYRTVPLLVVLPERVDQVQSVLQVCHRLTVPVVARGAGTGLSGGAMPLAKGVLLVMARLNRILEVSPQGRFARVQPGVRNLAISQAAAPYGLYYAPDPSSQIACTIGGNVAENAGGVHCLKYGLTVHNILKLEVFTVKGERLTLGSDALDSPGFDLLALFTGSEGMLGIVTEVTVRLLPKPPVARVLLASFDRVEDAARSVAHIIAAGIIPGGLEMMDNLAIRAAEGFIHAGYPVEAAAILLCELDGVEADVHEDCERVATLFTQAGASEVRLACDEAQRARFWAGRKNAFPAVGRLSPDYYCMDGTIPRRELPRVLVRISEMAREHGLRVANVFHAGDGNMHPLILFDANRPGELERAESLGGKILELCVAVGGSITGEHGVGREKINQMCAQFTHDELRVFHAVKAAFDPQGSLNPGKNIPTLHRCAEFGALHVHHGQLPFPALERF
>NZ_CP025035.2|WP_027915726.1|2665384_2665705_+|DUF2388-domain-containing-protein
MRQLALVPALLLLLPAGAAMARVDGRDIATSAGVSASLYSTFKDDKRIIPARDELSAFVASGGAIRGAYVEAALQQARKDHPGLQVNDEELARAILSQDDPLVAQQ
>NZ_CP025035.2|WP_100851599.1|2664529_2665156_-|glutathione-S-transferase
MSEYTLHCFAESGNAYKAALMLELTGQDWQPVFVDFFNGQTRDPMWRDEVNEQGEVPVLMHGGTCLTQSALILDYLSAQTGQFGPQSEEERREIWRWMLFDNHKFTSYYAALRFLLCLKQTGETEVTTFLRERAAAAYRIVDAHLAGTPFMVGARVTIADLSLAGYVFMPEDTGMNVQQYTHIEAWKARLQALPGWQHPYDLMPRVAP
>NZ_CP025035.2|WP_058603315.1|2674571_2675033_-|hypothetical-protein
MRTPFLFLAMLCAPLVQAAEHWTLNDQFDQAFTLDDKTRVVMVARSMATARLVNNAVEHTPEGYLEARGVVFVADIEKMPSMVAAVMVPAMRSANYRILLDRDGEVAKGYGGDRESVQWLEVQDGKVMAEQRYSDLPSLRQALVKMAGRVAGG
>NZ_CP025035.2|WP_100851606.1|2675164_2675656_+|DUF1543-domain-containing-protein
MLYIVMLGGRHAGAKIEVHDMVFAQAPNLQQAYPQLRDAWFGSQQGLHIDAWLEVDGVDGMRVELHPHPAKRGALRLYFINLGGYERGVFGEAHRYVLVSARNKSDAKALGKQHMQTGWLKPHTDAVLSVDDCLAIDCVDGLYVHLVEGPHKPVVSRNDYIPL
>NZ_CP025035.2|WP_100851607.1|2675691_2676660_+|5'-nucleotidase
MPYSIEQKLVIGVASSALFDLTVSDDIYTQDGVEAYRRHQEQNLDEPFPKGVAFPFIRRFLRINQAFPEQLPVEVVLLSRNSPETGLRVFRSINHYGLDITRAAFMSGRSPYEYIPAFNASLFLSANEEDVQKAIDANYPAGRVLPTRIYDDEIDTELRVAFDFDGVIADDEAESVYKRGNSLDEFQAHEQAHQRVPHTPGPLADLYRKLSLIRTLEDRKLEDDPHYKRILRIAIVTARNAPSHERVVTTLKDWGVSPDECFFLGGMEKPRVLSILKPHVFFDDQRSHLHSPAGDLPMVHVPFGVANRIPTAEPHIDGNSDD
>NZ_CP025035.2|WP_058603318.1|2676704_2677475_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSLIPGLDDKACVLICGASRGIGLALCNALARREDVDQLIAVSRHATQNPALRALADAHPNRILLVDCDAREEASLAAMAAQAGERCAHLHVVISTLGILHQENAKAEKSLAQLDLASLHASFTTNAFAPILLLKHLLPLLRKQPATFAALSARVGSISDNRLGGWYSYRASKSALNQLLHTASIELKRLNPNATVLALHPGTTDTELSRPFQGNVPEGKLFETTFAAQCIVELIGRLGPNVTGSFWGWDGRNIPW
>NZ_CP025035.2|WP_100851608.1|2677547_2678312_+|hypothetical-protein
MTLFYLKLAITPLLMWAISLASRRWGGLLGGLLAGMPITSGLVMTFLSLEQGTDFALNAVPGALGGLAAVLATYAFYLYATRRLAIGAAAGLAIVFYGLVAYVLTHWGHLYVSIGVALGLIVLLIIASGREPKPETLARVRHRYWEIPLRMVSATALLMITTHLAAWLGPQTSGMLAPIPVIAWPLMVFAHVQNGRAGMAAMVRGNAIGAVGVLAFYLMLSGLMKALGVMPTIVLAMGTAVALTVVLAGLLRGR
>NZ_CP025035.2|WP_100851609.1|2678364_2678682_-|hypothetical-protein
MPIDNNGPAAPYPGPAQNTPDTGEGHGSGLEQAPSEPKQGAAQAGGERPEDWNPPPGNPGSDQDSQVPRDNGTARTHEDPGAGDAALEEDMKDVQANNSVSQEHP
>NZ_CP025035.2|WP_138031817.1|2678791_2678980_-|hypothetical-protein
MNRDPMAQDDADEDMPVSPDPSVNPDNPTIPDPDDDPLMNEEEGGDWEDTEQPPMDVNTPRE
>NZ_CP025035.2|WP_100851610.1|2679555_2679780_-|hypothetical-protein
MHAFTVRYSLNGNSTEHTFELDQRGLALHEAALHLIVLHFGDGENSLVMPAADATPDEILAQAQVLGLTDIVVV
>NZ_CP025035.2|WP_100851611.1|2679901_2680963_-|aldo/keto-reductase
MKYRALGNTGLLVSELVIGTVPFGGRGSFEKTGSVDVDLAKRMFAAAFDAGVNLVDTADLYSHGLAEEIVGKALGERRHSIILASKARSPMSDNPNDSGASRYHLIRACEASLKRLGTDHIDLYQIHNWDGVTPVEETLAALDHLVQSGKIRYFGTSNYTAWQMMKTLGSAQLNGWQQPVSQQIYYTPESREAEYELLPMAIDQGFATLVWGPLGEGLLTGKVRRGQQTPKGTRQGNDWPEPYVHDRERAYDIIETLIAVGERHGCSPSRVCLAWLKDRPGITSVITAGRTLDQLQDNLQAADLLLTQEDLKQIEQATRIAPQYPYWHRIAAGMDRIDPAEAPFIELYRETMK
>NZ_CP025035.2|WP_058603480.1|2681184_2681691_+|GNAT-family-N-acetyltransferase
MQSPCTTYYLEMTSPEQLVEKPQRPDLHIVECEVPQPAFNRFLYALVGTPWSWGDLDAWSEAQWQAQVEQEAHRTWVAYHRGAIAGYYELYRPDGHNAEIRYFGLAPQFLGAGFGGPLLSQAVRCAWAWPGTQRVWVHTCTLDHPAALGNYQARGFKIYKQEQTPSEA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025035_1	1.1\|2674269\|32\|NZ_CP025035\|CRISPRCasFinder	2674269-2674300	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	380261-380292	7	0.781
NZ_CP025035_1	1.1\|2674269\|32\|NZ_CP025035\|CRISPRCasFinder	2674269-2674300	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1432806-1432837	7	0.781
NZ_CP025035_1	1.1\|2674269\|32\|NZ_CP025035\|CRISPRCasFinder	2674269-2674300	32	MT521995	Gordonia phage Moosehead, complete genome	35989-36020	8	0.75

1. spacer 1.1|2674269|32|NZ_CP025035|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

gccggaccggccgcgataggctgcg-cagcaat	CRISPR spacer
tccggaccggccgcggtaggcggcgaccgcgg-	Protospacer
 **************.***** *** * **..

2. spacer 1.1|2674269|32|NZ_CP025035|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

gccggaccggccgcgataggctgcg-cagcaat	CRISPR spacer
tccggaccggccgcggtaggcggcgaccgcgg-	Protospacer
 **************.***** *** * **..

3. spacer 1.1|2674269|32|NZ_CP025035|CRISPRCasFinder matches to MT521995 (Gordonia phage Moosehead, complete genome) position: , mismatch: 8, identity: 0.75

gccggaccggccgcgataggctgcgcagcaat	CRISPR spacer
ctcggactggcggcgataggctgcgtgataat	Protospacer
 .*****.*** *************....***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

744170 : 824841

Pseudomonas_phage(40.82%)

tail,transposase,terminase,head,protease,capsid,holin,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100850796.1\|744170_744944_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	7.2e-73	57.1
WP_100850797.1\|744940_745261_-	hypothetical protein	H2BDI8	Pseudomonas_virus	9.4e-19	54.6
WP_100850798.1\|745257_745992_-	hypothetical protein	NA	NA	NA	NA
WP_100850799.1\|746128_746365_-	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	2.9e-09	58.6
WP_100850800.1\|746354_746777_-	carbon storage regulator	J7I430	Pseudomonas_phage	1.4e-06	49.3
WP_100850801.1\|746865_747261_-	DUF134 domain-containing protein	A0A0A0YWH0	Pseudomonas_phage	2.4e-32	64.2
WP_100850802.1\|747401_748148_-	helix-turn-helix domain-containing protein	A0A0U1SXS9	Pseudomonas_phage	2.8e-37	38.6
WP_100850803.1\|748253_748550_+	Cro/Cl family transcriptional regulator	A0A2H4J1L8	uncultured_Caudovirales_phage	5.5e-13	63.3
WP_100852577.1\|748552_748777_+	hypothetical protein	NA	NA	NA	NA
WP_100850804.1\|749053_749383_+	hypothetical protein	NA	NA	NA	NA
WP_100850805.1\|749379_749649_+	hypothetical protein	NA	NA	NA	NA
WP_138031805.1\|749645_749936_+	hypothetical protein	NA	NA	NA	NA
WP_100850807.1\|749932_750697_+	phage antirepressor	E7DUM4	Liberibacter_phage	1.0e-31	41.6
WP_100850808.1\|750693_751299_+	hypothetical protein	NA	NA	NA	NA
WP_100850809.1\|751295_751526_+	hypothetical protein	NA	NA	NA	NA
WP_100850810.1\|752282_753101_+	ATP-binding protein	A0A2H4J2L2	uncultured_Caudovirales_phage	4.2e-55	46.3
WP_100850811.1\|753097_754510_+	AAA family ATPase	A0A0A0YUG7	Pseudomonas_phage	9.4e-188	75.2
WP_100850812.1\|754496_754997_+	hypothetical protein	NA	NA	NA	NA
WP_100852578.1\|755080_755533_+	hypothetical protein	NA	NA	NA	NA
WP_100850813.1\|755529_755817_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	3.1e-13	44.8
WP_100850814.1\|755813_756203_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	3.5e-36	57.0
WP_100850815.1\|756312_756642_-	hypothetical protein	NA	NA	NA	NA
WP_100850816.1\|756798_757173_+	hypothetical protein	A0A2H4J7X6	uncultured_Caudovirales_phage	4.0e-53	81.5
WP_070086236.1\|757173_757455_+\|holin	phage holin family protein	A0A2H4J0H1	uncultured_Caudovirales_phage	1.6e-43	94.6
WP_100850817.1\|757504_757717_+	hypothetical protein	NA	NA	NA	NA
WP_100850818.1\|757777_758143_+	hypothetical protein	NA	NA	NA	NA
WP_100850819.1\|758142_758484_+	HNH endonuclease	NA	NA	NA	NA
WP_100850820.1\|758634_759117_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	5.7e-28	48.8
WP_100850821.1\|759120_760815_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.8e-217	67.6
WP_100850822.1\|760811_762212_+\|portal	phage portal protein	A0A0U4IJ43	Pseudomonas_phage	6.6e-226	83.8
WP_100850823.1\|762225_763101_+\|protease	Clp protease ClpP	A0A0U4B0J0	Pseudomonas_phage	6.0e-108	70.3
WP_100850824.1\|763116_764331_+\|capsid	phage major capsid protein	A0A0U4JIW8	Pseudomonas_phage	6.2e-180	80.8
WP_100850825.1\|764767_765244_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	7.0e-18	39.6
WP_010952654.1\|765243_765585_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	4.5e-19	49.1
WP_100850826.1\|765577_766063_+	HK97 gp10 family phage protein	Q9MCA7	Pseudomonas_phage	3.3e-55	76.2
WP_100850827.1\|766059_766428_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	5.5e-39	62.3
WP_100850828.1\|766493_767228_+\|tail	phage tail protein	Q9MCA5	Pseudomonas_phage	1.8e-52	50.4
WP_100850829.1\|767236_767707_+\|tail	phage tail protein	K7PJU9	Enterobacteria_phage	2.0e-33	61.4
WP_100850830.1\|767992_768316_+	superinfection immunity protein	A0A067Y187	Escherichia_phage	3.2e-06	40.6
WP_100850831.1\|768361_770803_+\|tail	tail tape measure protein	D4FUM0	Pseudomonas_phage	3.8e-128	42.2
WP_100850832.1\|770799_771279_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.1e-44	56.6
WP_100850833.1\|771275_771656_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	9.8e-23	43.2
WP_100850834.1\|771652_774655_+	hypothetical protein	A0A286S259	Klebsiella_phage	1.9e-217	42.0
WP_100850835.1\|774664_775120_+	hypothetical protein	B5WZT5	Pseudomonas_phage	5.4e-44	56.8
WP_100850836.1\|775203_777462_+	hypothetical protein	A0A0U4B0B2	Pseudomonas_phage	1.7e-05	57.4
WP_100850837.1\|777466_778240_+	hypothetical protein	NA	NA	NA	NA
WP_100850838.1\|778297_778735_+	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	3.7e-34	54.5
WP_100850839.1\|778731_779109_+	hypothetical protein	H2BDA0	Pseudomonas_phage	8.2e-06	50.0
WP_100852579.1\|779126_779390_+	hypothetical protein	H2BDA1	Pseudomonas_phage	1.3e-21	65.5
WP_100850840.1\|779579_780362_+	hypothetical protein	NA	NA	NA	NA
WP_100852580.1\|780513_780738_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	3.3e-18	66.2
WP_100850841.1\|780801_781047_+	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	4.3e-24	67.1
WP_100850842.1\|781118_781316_-	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	7.3e-14	57.4
WP_100850843.1\|781339_781585_-	hypothetical protein	W6MVE5	Pseudomonas_phage	4.8e-23	61.2
WP_100850844.1\|782038_782221_+	hypothetical protein	NA	NA	NA	NA
WP_100850845.1\|782290_782899_-	hypothetical protein	S5FXQ0	Shigella_phage	1.9e-12	31.1
WP_100850846.1\|782908_783832_-	hypothetical protein	NA	NA	NA	NA
WP_058605955.1\|784521_784812_-	hypothetical protein	NA	NA	NA	NA
WP_027915438.1\|785046_785415_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_100850847.1\|785472_786168_-	glutamine amidotransferase	A0A2K9L2L9	Tupanvirus	2.3e-06	25.4
WP_100850848.1\|786204_787266_-	iron-sulfur cluster-binding domain-containing protein	NA	NA	NA	NA
WP_100850849.1\|787262_788225_-	diiron oxygenase	NA	NA	NA	NA
WP_100850850.1\|788348_789563_-	MFS transporter	NA	NA	NA	NA
WP_058604779.1\|789819_791118_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A240F3L3	Aeromonas_phage	7.3e-86	47.4
WP_058604778.1\|791127_792624_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_058604777.1\|792755_793838_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.1e-66	39.6
WP_058604776.1\|793957_795205_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_058604775.1\|795204_796047_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_058604774.1\|796071_797253_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_058604773.1\|797276_798542_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.1e-94	49.7
WP_100850623.1\|798941_799895_-\|transposase	transposase	NA	NA	NA	NA
WP_100850851.1\|800167_802972_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_100850852.1\|803046_804192_-	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA
WP_100850853.1\|804255_805926_-	L-lactate permease	NA	NA	NA	NA
WP_058604769.1\|806180_806948_+	FCD domain-containing protein	NA	NA	NA	NA
WP_023533119.1\|807090_807573_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.1e-26	44.0
WP_023533169.1\|807736_808177_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_023533140.1\|808298_808826_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_023533128.1\|808923_809328_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_023533129.1\|809429_811103_-	DNA repair protein RecN	NA	NA	NA	NA
WP_027915422.1\|811296_811854_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_058604768.1\|811955_813881_+	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	1.3e-150	49.8
WP_058604767.1\|814072_815197_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	4.5e-23	34.9
WP_058604766.1\|815210_816014_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_058604765.1\|816313_817450_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.1e-44	32.0
WP_058604764.1\|817555_820777_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_039613596.1\|820779_821256_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_081322853.1\|821233_821683_+	MFS transporter	NA	NA	NA	NA
WP_023533185.1\|821695_822004_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_027915415.1\|822106_822733_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_058604763.1\|822936_824841_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	1.2e-113	49.3

DBSCAN-SWA_2

1860229 : 1895666

Staphylococcus_phage(33.33%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058603812.1\|1860229_1860766_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_058637391.1\|1861060_1861777_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_058637390.1\|1861773_1862664_+	methylisocitrate lyase	NA	NA	NA	NA
WP_100851239.1\|1862759_1863887_+	2-methylcitrate synthase	NA	NA	NA	NA
WP_100851240.1\|1863993_1866585_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_058603817.1\|1866661_1867852_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_058603818.1\|1867996_1870606_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_100852605.1\|1871011_1871479_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_058603820.1\|1871906_1872101_-	hypothetical protein	NA	NA	NA	NA
WP_100851241.1\|1872099_1873338_+	hypothetical protein	NA	NA	NA	NA
WP_033695042.1\|1873452_1873809_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_058603822.1\|1873861_1874941_-	hypothetical protein	NA	NA	NA	NA
WP_058603823.1\|1875117_1875426_+	peptidase	NA	NA	NA	NA
WP_058603824.1\|1875425_1875740_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_058603825.1\|1875740_1876409_+	response regulator transcription factor	NA	NA	NA	NA
WP_100851242.1\|1876405_1877725_+	sensor histidine kinase	NA	NA	NA	NA
WP_100851243.1\|1877923_1879078_+	HPP family protein	NA	NA	NA	NA
WP_058603828.1\|1879051_1879918_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_100851244.1\|1880098_1881988_+	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	3.7e-54	30.1
WP_100851245.1\|1882008_1883097_-	cell division protein ZapE	NA	NA	NA	NA
WP_058637376.1\|1883217_1883460_-	hypothetical protein	NA	NA	NA	NA
WP_100851246.1\|1883947_1886335_-	hybrid sensor histidine kinase/response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	4.4e-12	26.0
WP_027914629.1\|1886348_1886807_-	response regulator	NA	NA	NA	NA
WP_100851247.1\|1886822_1889069_-	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	3.4e-22	25.6
WP_100851248.1\|1889336_1889864_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_058603834.1\|1889892_1890429_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_058603835.1\|1890447_1890981_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_058603836.1\|1890984_1891488_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_100851249.1\|1891527_1892304_+	molecular chaperone	NA	NA	NA	NA
WP_100852606.1\|1892403_1894701_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_100851250.1\|1894697_1895666_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

3035768 : 3040494

uncultured_Caudovirales_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023534840.1\|3035768_3036440_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.8e-102	88.8
WP_058603443.1\|3036667_3038047_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.9e-28	51.8
WP_058637907.1\|3038115_3038508_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.2e-53	81.4
WP_100851859.1\|3038508_3038868_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.2e-35	63.3
WP_058603446.1\|3038867_3039164_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.1e-28	62.6
WP_058603447.1\|3039160_3039496_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-43	74.8
WP_100851860.1\|3039492_3040494_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.3e-151	79.3

DBSCAN-SWA_4

3995813 : 4003591

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023533446.1\|3995813_3996623_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.0e-24	32.1
WP_058604414.1\|3996870_3997845_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.2e-35	33.6
WP_027913745.1\|3997856_3998381_+	HAD family hydrolase	A0A140XBD6	Dickeya_phage	2.4e-27	48.1
WP_028687057.1\|3998388_3998961_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_023533341.1\|3998947_3999472_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_058604413.1\|3999472_4000198_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-22	26.0
WP_058604412.1\|4000373_4001867_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_058604411.1\|4001948_4002257_+	ribosome-associated translation inhibitor RaiA	A0A0M7QCF2	Escherichia_phage	2.6e-05	35.2
WP_027913742.1\|4002269_4002734_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_023533444.1\|4002736_4003591_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.0e-07	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage