CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP025039	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_2, complete sequence	0 crisprs	NA	0	1
NZ_CP025042	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_5, complete sequence	0 crisprs	NA	0	2
NZ_CP025041	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_4, complete sequence	1 crisprs	NA	1	0
NZ_CP025040	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_3, complete sequence	1 crisprs	NA	2	1
NZ_CP025037	Klebsiella pneumoniae strain NU-CRE047 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,RT,WYL	1	13
NZ_CP025038	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_1, complete sequence	0 crisprs	csa3,RT	0	2

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6840 : 69325

Escherichia_phage(24.14%)

transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087439983.1\|6840_8215_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.4e-79	74.1
WP_022644891.1\|8385_9426_+	ATP-binding protein	M4QMW8	Micromonas_pusilla_virus	9.5e-20	35.2
WP_162859354.1\|9631_11914_+	S8 family peptidase	NA	NA	NA	NA
WP_015065592.1\|12347_13880_-\|transposase	IS3-like element ISKpn38 family transposase	A0A1B1P773	Bacillus_phage	3.1e-51	39.8
WP_004196353.1\|13968_15309_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032072095.1\|15564_15987_-	nickel resistance OB fold protein NcrY	NA	NA	NA	NA
WP_004196366.1\|16148_17279_-	Ni(II)/Co(II) efflux transporter permease subunit NcrC	NA	NA	NA	NA
WP_004196355.1\|17291_17561_-	nickel-sensing transcriptional repressor NcrB	NA	NA	NA	NA
WP_004196314.1\|17666_18965_-	MFS transporter	NA	NA	NA	NA
WP_004196325.1\|19198_19957_-	hypothetical protein	NA	NA	NA	NA
WP_004196315.1\|20010_20931_-	hypothetical protein	NA	NA	NA	NA
WP_004196359.1\|20993_21365_-	hypothetical protein	NA	NA	NA	NA
WP_004152397.1\|22276_23596_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004152396.1\|23845_24727_-	carbapenem-hydrolyzing class A beta-lactamase KPC-3	A0A1B0VBP7	Salmonella_phage	2.8e-73	52.2
WP_004152394.1\|25045_25825_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|25821_26847_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|26953_29983_-\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004152391.1\|30092_31808_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001217881.1\|32922_33480_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_063840280.1\|33713_34268_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001206315.1\|34337_35126_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000722315.1\|35185_36010_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
WP_000027057.1\|36709_37570_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001120891.1\|37779_38319_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000480968.1\|38290_39127_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|39126_39930_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043260.1\|39990_40806_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|41135_41312_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000427619.1\|41493_42498_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|44394_45099_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_025404032.1\|45134_45440_+	IncN plasmid KikA protein	NA	NA	NA	NA
WP_001452736.1\|45475_45787_+	hypothetical protein	NA	NA	NA	NA
WP_064577928.1\|45995_46484_+	restriction endonuclease	NA	NA	NA	NA
WP_001749967.1\|46488_46695_+	hypothetical protein	NA	NA	NA	NA
WP_072094655.1\|47106_48510_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_004098817.1\|48543_49758_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001389365.1\|50018_50783_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|50925_51192_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|51412_51886_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_022644888.1\|52041_52971_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.5e-45	40.1
WP_001067855.1\|52861_53566_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001348075.1\|53612_53849_-	AAA family ATPase	NA	NA	NA	NA
WP_001044770.1\|53922_54339_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|54335_54566_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_032072060.1\|55110_55431_+	hypothetical protein	NA	NA	NA	NA
WP_022644887.1\|55479_56118_+	hypothetical protein	NA	NA	NA	NA
WP_022644886.1\|56120_56906_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.9e-52	92.0
WP_032408936.1\|56963_57221_-	hypothetical protein	NA	NA	NA	NA
WP_032072094.1\|57349_57463_-	hypothetical protein	NA	NA	NA	NA
WP_012539983.1\|58093_58849_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.7e-135	95.2
WP_022644883.1\|58936_60475_-\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-281	94.7
WP_000612626.1\|60523_60871_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_007372134.1\|60867_61272_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_015632469.1\|62053_63259_+	ParA family protein	A0A077SL49	Escherichia_phage	4.0e-163	69.6
WP_022644882.1\|63258_64233_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	9.4e-86	55.0
WP_022644881.1\|64314_65586_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.6e-149	63.5
WP_020805749.1\|65585_66017_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
WP_001568038.1\|66249_67221_+	hypothetical protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_022644880.1\|67223_67895_+	plasmid stability mediator StbB	NA	NA	NA	NA
WP_001568040.1\|67956_68187_+	hypothetical protein	NA	NA	NA	NA
WP_072216848.1\|68305_68422_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|68623_69325_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP025042

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 17515

Escherichia_phage(66.67%)

integrase

attL 3758:3770|attR 19142:19154

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058876132.1\|1310_7046_-	DUF4011 domain-containing protein	NA	NA	NA	NA
3758:3770	attL	NA	NA	NA	NA
WP_009309939.1\|7232_9275_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000443938.1\|9267_10719_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000957857.1\|11758_11947_+	hypothetical protein	NA	NA	NA	NA
WP_022644731.1\|13831_14707_+	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	1.9e-82	57.1
WP_004197649.1\|15331_15958_+	ParA family plasmid-partitioning AAA ATPase	A0A222YXS3	Escherichia_phage	2.9e-40	43.6
WP_006788217.1\|16077_16257_+	hypothetical protein	NA	NA	NA	NA
WP_004197635.1\|16720_17515_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
19142:19154	attR	NA	NA	NA	NA

DBSCAN-SWA_2

26052 : 33570

Salmonella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015065644.1\|26052_29019_-\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
WP_001247892.1\|29093_29384_+	nucleotidyltransferase	NA	NA	NA	NA
WP_001293886.1\|29380_29782_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_000215515.1\|29771_30128_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000091613.1\|30382_30697_+	hypothetical protein	NA	NA	NA	NA
WP_004194048.1\|31123_32305_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.9e-120	64.2
WP_000509966.1\|32964_33570_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP025041

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025041_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025041_1

35013-35112

Orphan

Consensus_repeat	Method
TTAAAATCTTCTCACCTTACGTGAAAAATCCTCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025041_1

>merge|NZ_CP025041|1|35013-35112|CRISPRCasFinder
TTAAAATCTTCTCACCTTACGTGAAAAATCCTCTCATCTTTAGTGAAAATCTAACTACCTTAACTTAAAATCTTCTCACCTTACGTGAAAATCCTCTCAC

>NZ_CP025041|1|1|35013-35112|CRISPRCasFinder
TTAAAATCTTCTCACCTTACGTGAAAAATCCTCTCA	TCTTTAGTGAAAATCTAACTACCTTAAC
TTAAAATCTTCTCACCTTACGTGAAAATCCTCTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025041.1\|WP_087439959.1\|25728_26325_+\|DNA-distortion-polypeptide-1	unknown	unknown	unknown
NZ_CP025041.1\|WP_004208549.1\|22384_22597_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_000455437.1\|43221_43731_+\|transcription-termination-factor-NusG	unknown	unknown	gnl\|CDD\|193583
NZ_CP025041.1\|WP_000792381.1\|21471_21708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_000953538.1\|43963_44608_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP025041.1\|WP_000008707.1\|22586_22829_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274805
NZ_CP025041.1\|WP_000957857.1\|25484_25673_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_004199101.1\|41708_42869_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP025041.1\|WP_001348696.1\|28292_28529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_001099725.1\|22922_23261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_000916156.1\|44591_44882_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP025041.1\|WP_000662998.1\|21767_22319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_001348696.1\|43681_43918_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_058688577.1\|37978_38212_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274805
NZ_CP025041.1\|WP_000957857.1\|40867_41056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_000019473.1\|46172_47153_-\|IS5-like-element-ISKpn26-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP025041.1\|WP_000235886.1\|47475_48531_+\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377390
NZ_CP025041.1\|WP_000004083.1\|23335_23500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_004199355.1\|23496_23754_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025041.1\|WP_162859357.1\|47197_47464_+\|EexN-family-lipoprotein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP025041.1\|WP_004199101.1\|41708_42869_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	0.000262778
NZ_CP025041.1\|WP_000953538.1\|43963_44608_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	3.76225e-54
NZ_CP025041.1\|WP_000916156.1\|44591_44882_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.30356e-11
NZ_CP025041.1\|WP_000455437.1\|43221_43731_+\|transcription-termination-factor-NusG	gnl\|CDD\|193583	cd09894, NGN_SP_AnfA1, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), AnFA1. Regulation of the afp, antifeeding prophage, gene cluster is mediated by AnFA1, a RfaH-like transcriptional antiterminator. RfaH is an operon-specific virulence regulator, thought to arisen from an early duplication of N-Utilization Substance G (NusG). NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination in bacteria. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS biosynthesis genes. NusG SP family members are operon-specific transcriptional antitermination factors. Orthologs of the NusG gene exist in all bacteria, but their functions and requirements are different. The NusG N-terminal domain (NGN) is similar in all NusG orthologs, but its C-terminal domain and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggests that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.	5.51007e-43
NZ_CP025041.1\|WP_058688577.1\|37978_38212_+\|hypothetical-protein	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	1.62686e-05
NZ_CP025041.1\|WP_000019473.1\|46172_47153_-\|IS5-like-element-ISKpn26-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	5.33302e-54
NZ_CP025041.1\|WP_000235886.1\|47475_48531_+\|type-IV-secretion-system-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	2.43099e-28
NZ_CP025041.1\|WP_000008707.1\|22586_22829_+\|hypothetical-protein	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	7.87211e-06

>NZ_CP025041.1|WP_001348696.1|28292_28529_+|hypothetical-protein
MTATRKKTATRRKPQRNTLYLPSASREELDKIALEIGYRRGRRISSSGVVQYLIKKYSSQAIEELINEDDEDDDDFDD
>NZ_CP025041.1|WP_087439959.1|25728_26325_+|DNA-distortion-polypeptide-1
MRQQQDEPGRFSICSRQAAVVQFRIEESQHDDLLDCLKTLYPDEPGLTVAKGMKLLANALLKSKVKNEDVNVSKDNDDFIKTTMYLTGKQRTLIEKAAHRHGWNLSRECRYRIQTTLENELDFFDQELLVMNRCRNAIDKIGRNFHYIIVNDNARVLDKDGFYQDAERLSSEIMSLKSEFENYIMLCKGRTVSNKVEV
>NZ_CP025041.1|WP_000957857.1|25484_25673_-|hypothetical-protein
MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVTTSILKRRGDTAALTLLQDTGV
>NZ_CP025041.1|WP_004199355.1|23496_23754_+|hypothetical-protein
MKKQEFLDFISAEQRRGAVRFSLGFNSKGEIVLHWTNEAGLRVWSILSGNRGKSPSRANRERMSNLRRWLHDARQGMEGDTPEAE
>NZ_CP025041.1|WP_000004083.1|23335_23500_+|hypothetical-protein
MSERMLSAIQTVEKGGRPVFPLMPFSAFPEYMALLRKALEKKETKALIEKQEVL
>NZ_CP025041.1|WP_001099725.1|22922_23261_+|hypothetical-protein
MNTYVITFQALNTKKEKITCSAFVHSETLFLAVHSFEDKNRGRGYVITSVSELLSEELTAKNSLKKNINFWFNECGLSKSEVINEVINWKNFAYTLKELEEAKNEAIRELRS
>NZ_CP025041.1|WP_000008707.1|22586_22829_+|hypothetical-protein
MSFKPTPEEVKQARIKAGFTQQEAAERFGFTLSAWQAKETSGKTSRGLAAGTYELLLLLADEHPDYQLVKREKNQDKVTK
>NZ_CP025041.1|WP_004208549.1|22384_22597_+|hypothetical-protein
MSEDATRLFIELEKLMKVRSKEADKKTTKKIVFQKSFYYEEFSNVKDEIDDPILLKFYTDTIVKVQNHEF
>NZ_CP025041.1|WP_000662998.1|21767_22319_+|hypothetical-protein
MKEQKNFFERYKPVFEIVCRILGNGWRVNLLDDCQYRIKLTSPDFKNYSIHIRMEKGRLVIIGSVDSRSWRSPYHTCTVSPERNPVEIAADIEKKILSDALDNVDMAREYEQQLQQKREKKLILKGMLSRLVHLESWHGTLTGFKVENGLDGNVSERGDGYEMVIRGLSVDQLIKVAGFIKQL
>NZ_CP025041.1|WP_000792381.1|21471_21708_+|hypothetical-protein
MKNKTITEAELINIFESYGAYICPDEIEVTAKECNENGSVLHRGLNAEGWAHLFAKEEAYQQECEAQEAASDDGHFDE
>NZ_CP025041.1|WP_058688577.1|37978_38212_+|hypothetical-protein
MSFKPTPEEVKQARIKAGFTQQEAAERFGFTLSAWQAKETSGKTSRGLAAGTYELLLLLADEHPDYQLVKREKIRIK
>NZ_CP025041.1|WP_000957857.1|40867_41056_-|hypothetical-protein
MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVTTSILKRRGDTAALTLLQDTGV
>NZ_CP025041.1|WP_004199101.1|41708_42869_+|relaxase/mobilization-nuclease-domain-containing-protein
MGVYVDKEFRVKRKSSEAGRKSAFAHKVKNGGKNYQRNVQERINRKGASKEVVVKISGGAITRQGVRNSIDYMSRESELPVMSESGQVWKGDEIQEAKEHMIDRANDPQNVFDDKGKENKKVTQNIVFSPPVSAKVKPEDLLESVRKTMNKKYPNHRFVLGYHNDKKEHPHVHVVFRIRDNDGKRADIRKKDLREIRTGFCEELKMKGYDVKATHKQQHGLNQSIKDAHKTAPKRQKGVYEVVDVGYDHYQNDKTKPKQHFIKLKTLNKGVEKTYWGADFGELTTRENVKKGDLVKLKKLGQKEVKIPALDKNGVQHGWKTAHRNEWQLENLGVKGIDRISSSSKELVLNSAEMIKKQQLQMRNFSQIKQSMIQSEQKVKIGIRLG
>NZ_CP025041.1|WP_000455437.1|43221_43731_+|transcription-termination-factor-NusG
MEWYVLQFTTTRFAAVFAHLERLNFSYFCPMETERYRRPDKIISYRERRLPLFPGYLFIQADFEEVHSTTITAIPYVQRFISFGGEPLPVPEDVMAELLYRQSHTTAQANLLRKSIPHDFAEILLMDNPQQRSMAFIHYITERSLTHKMKRKKNDCYPKKNRNETQAPT
>NZ_CP025041.1|WP_001348696.1|43681_43918_+|hypothetical-protein
MTATRKKTATRRKPQRNTLYLPSASREELDKIALEIGYRRGRRISSSGVVQYLIKKYSSQAIEELINEDDEDDDDFDD
>NZ_CP025041.1|WP_000953538.1|43963_44608_+|lytic-transglycosylase-domain-containing-protein
MLSTTAFAALALQCAASVHPDTAHEVARVESGFNPYAIAEIIPKVERKPGDKGVVSYFPKTKEAALQIVNQIESRNHRYSVGLMQITSTNFANFNTTAEKMFDPCENLKVSEQILVDCYKRGGDILRGLSCYYSGNPETGTKPESDFNNTSYIQRIGFNPPDNKKNWVVPSVKDAIRKENVTQSIKPKEVTVYPQYAMRGTVLDEKETNDVKTQ
>NZ_CP025041.1|WP_000916156.1|44591_44882_+|TrbC/VirB2-family-protein
MLKLNKRYLTLSVFMAALMLCVAEPAFADDVSTKTTGFLQKIIDFLTDIRKPAITIIALVIGYIAIFSRQHAAWITPLIIGIIIFIVAPYLPDWLA
>NZ_CP025041.1|WP_000019473.1|46172_47153_-|IS5-like-element-ISKpn26-family-transposase
MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ
>NZ_CP025041.1|WP_162859357.1|47197_47464_+|EexN-family-lipoprotein
MRNLFAPSLVAALGLTFFLTGCEEVKSVDWWQSHVDDATKKVAECKKSGSDSENCKNAKEGLFRYKQLHPKHVDYKDAFKNVLGKDGS
>NZ_CP025041.1|WP_000235886.1|47475_48531_+|type-IV-secretion-system-protein
MATSRYFQAAHDVIVKTLDQSLTGQLDNFSSIASQLGKYGISIYILWYAYTTIVGKQKTAVQDFLWNLCRFWLILVFVKNMGGWLDSATQAIDGLKETFAGGDPWKWVDELWEKVQQVAAYLMSKDTSKYVKTDGAIASLLTYAGGIIALLLTSIVYLAAEVTIKILTITAPLFIICLSFGFLRQMFNSWLQLIFSSCFIFLFCGLAIKAGMTFLNGILTISIANADELNLISTGAQAGVAGAFMAWIIWQAKTYASQLAGVGVEGAMQGAAAMGIGAGVFGASRMGRNLLGMGKNAGIGAWKGVRRQDGGFNQSPGVSGKLGNLTGQGVNIGAKRLRQAAIDAAKKKYGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025041_1	1.1\|35049\|28\|NZ_CP025041\|CRISPRCasFinder	35049-35076	28	NZ_CP025041	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_4, complete sequence	35049-35076	0	1.0
NZ_CP025041_1	1.1\|35049\|28\|NZ_CP025041\|CRISPRCasFinder	35049-35076	28	MN200942	Escherichia coli strain E648 plasmid pE648NDM-5, complete sequence	47163-47190	0	1.0

1. spacer 1.1|35049|28|NZ_CP025041|CRISPRCasFinder matches to NZ_CP025041 (Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_4, complete sequence) position: , mismatch: 0, identity: 1.0

tctttagtgaaaatctaactaccttaac	CRISPR spacer
tctttagtgaaaatctaactaccttaac	Protospacer
****************************

2. spacer 1.1|35049|28|NZ_CP025041|CRISPRCasFinder matches to MN200942 (Escherichia coli strain E648 plasmid pE648NDM-5, complete sequence) position: , mismatch: 0, identity: 1.0

tctttagtgaaaatctaactaccttaac	CRISPR spacer
tctttagtgaaaatctaactaccttaac	Protospacer
****************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP025040

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025040_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025040_1

79443-79611

Orphan

Consensus_repeat	Method
ATAATTAAATCATGATTTAATG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP025040_1

>merge|NZ_CP025040|1|79443-79611|PILER-CR
ATAATTAAATCATGATTTCATTTATTTTTATGCTATTGTAATTTAAGTCATTATTGTTTTGCATGTTTTACTGAAATCATTAAATCATGATTTAATGTTGTTCCTTTACCTCAGCTATGTCATAGTTAGCTTAGTTGTAGAACTTGATAATGAAATCATGATTTAATGA

>NZ_CP025040|1|1|79443-79611|PILER-CR
ATAATTAAATCATGATTTCATTT	ATTTTTATGCTATTGTAATTTAAGTCATTATTGTTTTGCATGTTTTACTGAAATCAT
TAAATCATGATTTAATGTTGTTC	CTTTACCTCAGCTATGTCATAGTTAGCTTAGTTGTAGAACTTGATAATG
AAATCATGATTTAATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025040.1\|WP_020314652.1\|80695_81970_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|179607
NZ_CP025040.1\|WP_020314648.1\|75840_76119_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025040.1\|WP_000235177.1\|69165_69564_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP025040.1\|WP_022644719.1\|78118_78385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025040.1\|WP_020314646.1\|76436_77048_+\|DUF2913-family-protein	unknown	unknown	gnl\|CDD\|371392
NZ_CP025040.1\|WP_020314635.1\|82427_82673_-\|DinI-like-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP025040.1\|WP_022644718.1\|79622_80249_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP025040.1\|WP_020314639.1\|77044_77998_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|227751
NZ_CP025040.1\|WP_001567660.1\|74358_75381_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP025040.1\|WP_022644720.1\|71296_74335_+\|Tn3-family-transposase	unknown	unknown	gnl\|CDD\|376561
NZ_CP025040.1\|WP_046960466.1\|81981_82431_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP025040.1\|WP_020314642.1\|78404_79025_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239736
NZ_CP025040.1\|WP_000470624.1\|70493_71129_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239736
NZ_CP025040.1\|WP_020314631.1\|82876_83107_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025040.1\|WP_009652884.1\|69629_70466_+\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|131868
NZ_CP025040.1\|WP_020314634.1\|80293_80521_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP025040.1\|WP_020314652.1\|80695_81970_-\|Y-family-DNA-polymerase	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP025040.1\|WP_000235177.1\|69165_69564_+\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.83252e-43
NZ_CP025040.1\|WP_046960466.1\|81981_82431_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.88389e-55
NZ_CP025040.1\|WP_020314635.1\|82427_82673_-\|DinI-like-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	2.94757e-08
NZ_CP025040.1\|WP_022644718.1\|79622_80249_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.14227e-14
NZ_CP025040.1\|WP_020314646.1\|76436_77048_+\|DUF2913-family-protein	gnl\|CDD\|371392	pfam11140, DUF2913, Protein of unknown function (DUF2913). This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.	4.82332e-14
NZ_CP025040.1\|WP_020314639.1\|77044_77998_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	2.6724e-120
NZ_CP025040.1\|WP_001567660.1\|74358_75381_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.61883e-54
NZ_CP025040.1\|WP_022644720.1\|71296_74335_+\|Tn3-family-transposase	gnl\|CDD\|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	0
NZ_CP025040.1\|WP_020314642.1\|78404_79025_-\|recombinase-family-protein	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	1.67235e-69
NZ_CP025040.1\|WP_000470624.1\|70493_71129_-\|recombinase-family-protein	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	1.74126e-75
NZ_CP025040.1\|WP_009652884.1\|69629_70466_+\|S-formylglutathione-hydrolase	gnl\|CDD\|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	2.23439e-133

>NZ_CP025040.1|WP_020314642.1|78404_79025_-|recombinase-family-protein
MFVFGYLRASTSEQDASRAKNVLKAFANQHGHRIAGWYIDNVSGTTMNRPELIRLLGDAEPGDVILIEQVDRLTRLDDAGWETLRKQITDKQLAIVSLDLPTSYLALSSTVSDDFTRSMLKAVNGMMLDMLAAIARKDYEDRRRRQSEGISKAKAEGKYRGRVADAQKHELIRTLRLVNGKSLRETARLAGVSKMTVIRVCSSADK
>NZ_CP025040.1|WP_022644719.1|78118_78385_-|hypothetical-protein
MKTKKIPLVIYTVIVAGLTILGTRLYDSVSDTTDPAIANGPFWAGLCVKTDSKDGMNELICSNIRIFVKAEDYDRSVRKRELSGILND
>NZ_CP025040.1|WP_020314639.1|77044_77998_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKKKNSTPTPHDATFRQFLTQPDIARDFMELHLPAELQAICDLSTLKLESGSFIEDDLRQYFSDVLYSLKTTAGDGYVHVLIEHQSSPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDPILAGTLYSSAFPLVDVTVIPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLAPILLAGYLSSSQVVSLVHYIVQAGETSDAEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIQQGIEQGIQLGEQRGIEKGEREATLKIARTMLQNGIDRNTVMKVTGLTEEDLAQIRH
>NZ_CP025040.1|WP_020314646.1|76436_77048_+|DUF2913-family-protein
MALTHKTGHLAWCALVALALARKEQGELSPAQENLFLTRWLAAALKQRRFSRDVAQDIGWLLNQGRLLGVRAKLADKLDYVWRSCSGELTEQNDMFRLTYALETAKDMGWNYRVMSDREWAGRYALVLNPGVNGVYLLRTNLDAAFDDNGQQTNPLTARLTGSVAGVMKLLNRCGWQAEPESGASLPHQYSLMAGQGVPGKGD
>NZ_CP025040.1|WP_020314648.1|75840_76119_+|hypothetical-protein
MRVAEHIILDALTRGGCIKTFWRISSRQAAESSARIPEGYILESPGEREDIVLSHADFHALEKQLEQKETWEQVVGVTCFGGVTWQLRAGSV
>NZ_CP025040.1|WP_001567660.1|74358_75381_+|IS110-family-transposase
MTITTVGIDLAKNVFAVHCVDQNGKTVLVKSRVTRAALPGLIAGLPPCVIGMEACSGAHYWARLFRQYGHEPRLMAAKFVSPYRMAGKSGKNDAADAQAICEAVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSTDALRHIVFEQKNSLPLQVQQCVDDLLEHVARIEDNIAEYDRILSRMAKTDHRSQRLMELKGVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRTLLVQGARSVLIGAEKRTDLFSRWVCSLVERRGYWRAVVAIAAKNARLCWASLHYGDDFRLYSAS
>NZ_CP025040.1|WP_022644720.1|71296_74335_+|Tn3-family-transposase
MARRQILSLSERESLLALPDEELTLTRMAYFSEHDLALISAHRKPASRFGFAVLLCYLKNVGFTPDKKIPPSDALLKHIASRLKLTGDLWPAYLSGRETTRREHLTELYRYLGLKAFTGKIQQDCITHLLPMATRTDKGILLAEELLVWLRQNNVIIPSIDVVERSCAEAMAGGDKIVFQTLNAPLTPAHRDALDCLLESSDNQSSRLTWLLQPPGKINGKNVLQHLDRLSSIESLALPEGIDRTIHQNRLLKLAREGRKMSSRDLTRFSAARRHAILVCVLEEARATLTDEVIELHERMLNSLFSKAKRTQAERLQQTGKLIQSKLRQYINVGQALSDARDSGGDPWLAIENILPWPEFVASLEETRHLARKNNFDPLHIITEKYSTLRKYAPRMLSALQLIATPAAQPLADALVVIKDMYRKQSRKVPATAPLEFVPESWRKVVITPAGIDRQYYEFCALSELKGALRSGDIWVKGSRRYKNFDDYLIPEKDFDKLTPALPLPVSADYHEYITSRMTLLQSRLEEVNAMAALGELPDVEISYRGVKVSPLDNSVPVQVSPLAELVYSMLPRPKITEILDEVNSWTTFTRHFSHIKTDITRPDIRLLLTTILADGINLGLTKMAEACPGSTKSSLEDIQAWYIRDETYSAALAELVNAQGKRPLAAFWGDGTTSSSDGQNFRTGRSGRYAGQVNPKYGQEPGRQFYTHISDQYSPFYTCIISRVRDSTHVLDGLLYHESDLEIREHYTDTAGFTDHVFALMHLLGFAFCPRIRDLHDKKLFIKGKAGQYPALQSLISTTSLNLKEIEIHWREVLRLATSIKQGTVTASLMLKKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPALRRRVQAGLNKGEARNALARAVFMHRLGEIRDRKPENQSYRASGLTLLTAAISLWNTVYMERAVDALKRKGVKINEQLLSHLSPLGWEHINLTGDYIWKSNRIPSAGKFRRLRPAKLGRSKNNLNEWKGLPLIMRLINSCAIMG
>NZ_CP025040.1|WP_000470624.1|70493_71129_-|recombinase-family-protein
MFIRAYLRASTEDQFADRAKEMLEQFVQERGHKIASYYRENISGTKLDRPELGRLLMDSHRNDILLVEQIDRLTRLSNSDWMTLKKQIEQHELRIVSLDVPTSWQALSDKDPSQADPITRAVITAINNMLIDLMASMSHKDWLSRRHRQKQGIERAHTLGKYRGKQADQERHKKVLYYRQVKKLSIRETAEATGYSTSQVCRIQALFRPEN
>NZ_CP025040.1|WP_009652884.1|69629_70466_+|S-formylglutathione-hydrolase
MELIEQHASAGGWQNVYRHNSQTLNCGMNFGVYLPPKAATEKLPVLYWLSGLTCTEQNFITKSGMQHYAARNNIIVVVPDTSPRGEHVADADSYDLGQGAGFYLNATEHPWNTHYRMYDYILHELPDVVMEHLPVTSRKSISGHSMGGLGALVLSLRNPDEYVSVSAFSPIVSPSQVPWGQQAFTAYLGENKKTWEHYDPVSLILQGAKLPEIFIDQGLSDAFYEDQLRTKSLERVCNEMNINTSFRYHTGYDHSYYFISSFIGEHIAYHANRLRLSA
>NZ_CP025040.1|WP_000235177.1|69165_69564_+|VOC-family-protein
MATPVISGNDVFSHVFIGASDVEKSADFYDAVLGTLGINNLGPFGNGWVLYGREKPAFIIAHPGNGEAPSANGVTVGFAAASPEEVDAFHAAGLAAGGKDEGQPGPRSHLPGAYAAYLRDPAGNKITAYTFI
>NZ_CP025040.1|WP_022644718.1|79622_80249_+|ParA-family-protein
MGKVISIVGQKGGGSKSTEARTLAVGFSEAGWKTHLADIDTKQQTSLKWTERREKSGLSPIDCALYRRVETAVRMKDSCHLLIIDGRPAAETTSLDVADESDLVIITTGTTIDDLEPSLELARELIKKGIDKSKIVFIVSKSPSQSQGEKAQETIKAWGYKVINTVIPFKTSYGEALDTGRALHETPFKSLNETAKQMIEEIHDIINS
>NZ_CP025040.1|WP_020314634.1|80293_80521_+|hypothetical-protein
MKGPGKSIKIEPPKEDEPTLDVTGKGAVPDSAVKPIQIKVPVSKHKEMKAYAAEQGISMTDMLLAGYDMYRNKMK
>NZ_CP025040.1|WP_020314652.1|80695_81970_-|Y-family-DNA-polymerase
MFALADVNSFYASCEKVFRPDLRDRPVIVLSNNDGCVIARSREARAIGIPMGAPWFKVKGLAEKHNVAVFSSNYSLYHSMSERVMRCLEALAPRVEQYSIDEMFLDVAGIDNCVDFEDFGRQLREYVHRHTALTIGVGMGPSKTLAKSAQWASKEWPQFGGVLALTPDNPRRTEKLLSLQPVEEIWGVGRRISKKLNTMGITTALQLARANPAFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERITEYDAMRQAVCQYAERAAEKLRSERQYCRHIAVFVKTSPFAVKEPYYGNMASESLPFPSRDSRDIIAAAVRALGRIWVPEHRYAKAGVMLNDFTPAGVSQLSLFDDVQPRANSEALMNVVDGINHSGLGKVWFAGRGIAPDWQMKRDLLSPAYTTRWADIPSARLC
>NZ_CP025040.1|WP_046960466.1|81981_82431_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MSRREPLFDPEAVFTLPATPSSLQLPLFADACAAGFPSPAGDYVEQELDLNSLCIRHPAATYFLRASGESMKDLGLYDGDILVVDRSETAVDGDVVIAEVDGGFTVKRLRLHPRPALEPMNPAYPTLWPEELTLFGVVMHFIHRTRARL
>NZ_CP025040.1|WP_020314635.1|82427_82673_-|DinI-like-family-protein
MLQISVRFSPEQVKAMRSGTFAALQQEIERRLTPRYPQLWLNIGKSSQTALDVSGARSDKEKSDIMNTLEAIWQDDTWLPE
>NZ_CP025040.1|WP_020314631.1|82876_83107_+|hypothetical-protein
MSPVFRNALRFAGVPVDSSEPVRRQYGSRMIGIVTVCLLPLLVFDVPLWVFVLSQVIWGAGVYIGLSVAGDKSRNR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP021753	Klebsiella pneumoniae strain AR_0113 plasmid unitig_2, complete sequence	112606-112662	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	CP052165	Klebsiella pneumoniae strain F16KP0082 plasmid pF16KP0082-3, complete sequence	15773-15829	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	CP052160	Klebsiella pneumoniae strain F16KP0084 plasmid pF16KP0084-2, complete sequence	52062-52118	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	CP052145	Klebsiella pneumoniae strain F17KP0012 plasmid pF17KP0012-2, complete sequence	16181-16237	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP008791	Klebsiella oxytoca KONIH1 plasmid pKPC-727, complete sequence	176746-176802	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP025040	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_3, complete sequence	79461-79517	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP022275	Citrobacter freundii strain 18-1 plasmid pBKPC18-1, complete sequence	61191-61247	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	MN891677	Klebsiella pneumoniae strain ZZ41 plasmid pZZ41-KPC, complete sequence	51326-51382	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	MN891679	Klebsiella pneumoniae strain ZZ40 plasmid pZZ40-KPC, complete sequence	32331-32387	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP027614	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence	13684-13740	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP022349	Klebsiella michiganensis strain K516 plasmid pK516_KPC, complete sequence	43005-43061	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	KY940546	Klebsiella pneumoniae plasmid pUCLA3, complete sequence	29736-29792	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP021545	Klebsiella pneumoniae strain AR_0112 plasmid tig00000001, complete sequence	79808-79864	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP006922	Klebsiella pneumoniae 30684/NJST258_2 plasmid pNJST258C1, complete sequence	8165-8221	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP020064	Klebsiella pneumoniae strain AR_0117 plasmid unitig_3, complete sequence	75854-75910	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP038275	Raoultella ornithinolytica strain WLK218 plasmid pWLK-101716, complete sequence	99886-99942	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP021857	Klebsiella pneumoniae strain AR_0125 plasmid tig00000002_pilon, complete sequence	68227-68283	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	CP052205	Klebsiella pneumoniae strain F16KP0002 plasmid pF16KP0002-2, complete sequence	105904-105960	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP023186	Klebsiella michiganensis strain K518 plasmid pK518_KPC, complete sequence	22497-22553	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_CP026717	Klebsiella oxytoca strain AR_0028 plasmid unitig_2_pilon, complete sequence	64587-64643	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	NZ_MF788069	Raoultella ornithinolytica strain 23141 plasmid p23141-1, complete sequence	43995-44051	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	MT108213	Klebsiella pneumoniae strain ZZ100 plasmid pZZ100-KPC, complete sequence	30012-30068	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP021753	Klebsiella pneumoniae strain AR_0113 plasmid unitig_2, complete sequence	112685-112733	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	CP052165	Klebsiella pneumoniae strain F16KP0082 plasmid pF16KP0082-3, complete sequence	15702-15750	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	CP052160	Klebsiella pneumoniae strain F16KP0084 plasmid pF16KP0084-2, complete sequence	52141-52189	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	CP052145	Klebsiella pneumoniae strain F17KP0012 plasmid pF17KP0012-2, complete sequence	16260-16308	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP008791	Klebsiella oxytoca KONIH1 plasmid pKPC-727, complete sequence	176825-176873	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP025040	Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_3, complete sequence	79540-79588	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP022275	Citrobacter freundii strain 18-1 plasmid pBKPC18-1, complete sequence	61120-61168	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	MN891677	Klebsiella pneumoniae strain ZZ41 plasmid pZZ41-KPC, complete sequence	51405-51453	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	MN891679	Klebsiella pneumoniae strain ZZ40 plasmid pZZ40-KPC, complete sequence	32260-32308	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP017590	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ09, complete sequence	107476-107524	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP027614	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence	13763-13811	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP022349	Klebsiella michiganensis strain K516 plasmid pK516_KPC, complete sequence	43084-43132	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	KY940546	Klebsiella pneumoniae plasmid pUCLA3, complete sequence	29815-29863	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP021545	Klebsiella pneumoniae strain AR_0112 plasmid tig00000001, complete sequence	79887-79935	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP006922	Klebsiella pneumoniae 30684/NJST258_2 plasmid pNJST258C1, complete sequence	8244-8292	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP020064	Klebsiella pneumoniae strain AR_0117 plasmid unitig_3, complete sequence	75783-75831	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP038275	Raoultella ornithinolytica strain WLK218 plasmid pWLK-101716, complete sequence	99815-99863	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	CP050170	Klebsiella pneumoniae plasmid Carbapenemase(KPC-2)_IncFII, complete sequence	27143-27191	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP021857	Klebsiella pneumoniae strain AR_0125 plasmid tig00000002_pilon, complete sequence	68306-68354	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	CP052205	Klebsiella pneumoniae strain F16KP0002 plasmid pF16KP0002-2, complete sequence	105983-106031	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP023186	Klebsiella michiganensis strain K518 plasmid pK518_KPC, complete sequence	22426-22474	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_CP026717	Klebsiella oxytoca strain AR_0028 plasmid unitig_2_pilon, complete sequence	64516-64564	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	NZ_MF788069	Raoultella ornithinolytica strain 23141 plasmid p23141-1, complete sequence	44074-44122	0	1.0
NZ_CP025040_1	1.2\|79546\|49\|NZ_CP025040\|PILER-CR	79546-79594	49	MT108213	Klebsiella pneumoniae strain ZZ100 plasmid pZZ100-KPC, complete sequence	29941-29989	0	1.0
NZ_CP025040_1	1.1\|79466\|57\|NZ_CP025040\|PILER-CR	79466-79522	57	CP050170	Klebsiella pneumoniae plasmid Carbapenemase(KPC-2)_IncFII, complete sequence	27214-27270	1	0.982

1. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP021753 (Klebsiella pneumoniae strain AR_0113 plasmid unitig_2, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

2. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to CP052165 (Klebsiella pneumoniae strain F16KP0082 plasmid pF16KP0082-3, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

3. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to CP052160 (Klebsiella pneumoniae strain F16KP0084 plasmid pF16KP0084-2, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

4. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to CP052145 (Klebsiella pneumoniae strain F17KP0012 plasmid pF17KP0012-2, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

5. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP008791 (Klebsiella oxytoca KONIH1 plasmid pKPC-727, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

6. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP025040 (Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_3, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

7. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP022275 (Citrobacter freundii strain 18-1 plasmid pBKPC18-1, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

8. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to MN891677 (Klebsiella pneumoniae strain ZZ41 plasmid pZZ41-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

9. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to MN891679 (Klebsiella pneumoniae strain ZZ40 plasmid pZZ40-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

10. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP027614 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

11. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP022349 (Klebsiella michiganensis strain K516 plasmid pK516_KPC, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

12. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to KY940546 (Klebsiella pneumoniae plasmid pUCLA3, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

13. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP021545 (Klebsiella pneumoniae strain AR_0112 plasmid tig00000001, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

14. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP006922 (Klebsiella pneumoniae 30684/NJST258_2 plasmid pNJST258C1, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

15. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP020064 (Klebsiella pneumoniae strain AR_0117 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

16. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP038275 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-101716, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

17. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP021857 (Klebsiella pneumoniae strain AR_0125 plasmid tig00000002_pilon, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

18. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to CP052205 (Klebsiella pneumoniae strain F16KP0002 plasmid pF16KP0002-2, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

19. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP023186 (Klebsiella michiganensis strain K518 plasmid pK518_KPC, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

20. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_CP026717 (Klebsiella oxytoca strain AR_0028 plasmid unitig_2_pilon, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

21. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to NZ_MF788069 (Raoultella ornithinolytica strain 23141 plasmid p23141-1, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

22. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to MT108213 (Klebsiella pneumoniae strain ZZ100 plasmid pZZ100-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
*********************************************************

23. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP021753 (Klebsiella pneumoniae strain AR_0113 plasmid unitig_2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

24. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to CP052165 (Klebsiella pneumoniae strain F16KP0082 plasmid pF16KP0082-3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

25. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to CP052160 (Klebsiella pneumoniae strain F16KP0084 plasmid pF16KP0084-2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

26. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to CP052145 (Klebsiella pneumoniae strain F17KP0012 plasmid pF17KP0012-2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

27. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP008791 (Klebsiella oxytoca KONIH1 plasmid pKPC-727, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

28. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP025040 (Klebsiella pneumoniae strain NU-CRE047 plasmid pNU-CRE047_3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

29. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP022275 (Citrobacter freundii strain 18-1 plasmid pBKPC18-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

30. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to MN891677 (Klebsiella pneumoniae strain ZZ41 plasmid pZZ41-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

31. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to MN891679 (Klebsiella pneumoniae strain ZZ40 plasmid pZZ40-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

32. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP017590 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ09, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

33. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP027614 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

34. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP022349 (Klebsiella michiganensis strain K516 plasmid pK516_KPC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

35. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to KY940546 (Klebsiella pneumoniae plasmid pUCLA3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

36. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP021545 (Klebsiella pneumoniae strain AR_0112 plasmid tig00000001, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

37. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP006922 (Klebsiella pneumoniae 30684/NJST258_2 plasmid pNJST258C1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

38. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP020064 (Klebsiella pneumoniae strain AR_0117 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

39. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP038275 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-101716, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

40. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to CP050170 (Klebsiella pneumoniae plasmid Carbapenemase(KPC-2)_IncFII, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

41. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP021857 (Klebsiella pneumoniae strain AR_0125 plasmid tig00000002_pilon, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

42. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to CP052205 (Klebsiella pneumoniae strain F16KP0002 plasmid pF16KP0002-2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

43. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP023186 (Klebsiella michiganensis strain K518 plasmid pK518_KPC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

44. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_CP026717 (Klebsiella oxytoca strain AR_0028 plasmid unitig_2_pilon, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

45. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to NZ_MF788069 (Raoultella ornithinolytica strain 23141 plasmid p23141-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

46. spacer 1.2|79546|49|NZ_CP025040|PILER-CR matches to MT108213 (Klebsiella pneumoniae strain ZZ100 plasmid pZZ100-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	CRISPR spacer
ttgttcctttacctcagctatgtcatagttagcttagttgtagaacttg	Protospacer
*************************************************

47. spacer 1.1|79466|57|NZ_CP025040|PILER-CR matches to CP050170 (Klebsiella pneumoniae plasmid Carbapenemase(KPC-2)_IncFII, complete sequence) position: , mismatch: 1, identity: 0.982

catttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	CRISPR spacer
aatttatttttatgctattgtaatttaagtcattattgttttgcatgttttactgaa	Protospacer
 ********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59189 : 82673

Escherichia_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|59189_59894_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|61569_62274_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001235713.1\|62969_63527_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_022644723.1\|63690_66696_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.6
WP_001141270.1\|67708_67984_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000842086.1\|68014_69124_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	3.7e-30	28.1
WP_000235177.1\|69165_69564_+	VOC family protein	NA	NA	NA	NA
WP_009652884.1\|69629_70466_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000470624.1\|70493_71129_-	recombinase family protein	NA	NA	NA	NA
WP_022644720.1\|71296_74335_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-294	53.6
WP_001567660.1\|74358_75381_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_020314648.1\|75840_76119_+	hypothetical protein	NA	NA	NA	NA
WP_020314646.1\|76436_77048_+	DUF2913 family protein	NA	NA	NA	NA
WP_020314639.1\|77044_77998_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	9.5e-75	57.1
WP_022644719.1\|78118_78385_-	hypothetical protein	NA	NA	NA	NA
WP_020314642.1\|78404_79025_-	recombinase family protein	A0A219Y912	Aeromonas_phage	1.0e-08	31.0
WP_022644718.1\|79622_80249_+	ParA family protein	A0A2H4EW66	Aeromonas_phage	4.5e-25	34.4
WP_020314634.1\|80293_80521_+	hypothetical protein	NA	NA	NA	NA
WP_020314652.1\|80695_81970_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.3e-148	60.7
WP_046960466.1\|81981_82431_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.3e-31	52.0
WP_020314635.1\|82427_82673_-	DinI-like family protein	Q7Y3V9	Yersinia_phage	1.1e-08	39.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP025038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21441 : 64176

Salmonella_phage(20.0%)

bacteriocin,integrase,transposase

attL 27426:27485|attR 76941:77269

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004178051.1\|21441_23763_+\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
WP_004152296.1\|23764_24043_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_009485932.1\|24383_24863_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	9.8e-20	35.2
WP_004199332.1\|25183_25462_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_004171457.1\|25678_25756_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004152292.1\|25748_26606_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_072093215.1\|26656_26815_+	hypothetical protein	NA	NA	NA	NA
WP_032408758.1\|26899_27034_-	hypothetical protein	NA	NA	NA	NA
WP_029505403.1\|27242_27452_-	hypothetical protein	NA	NA	NA	NA
27426:27485	attL	NA	NA	NA	NA
WP_000957857.1\|33222_33411_-	hypothetical protein	NA	NA	NA	NA
WP_003846917.1\|35565_36819_-	lactose permease	NA	NA	NA	NA
WP_004152287.1\|36870_39945_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_004152286.1\|40066_41149_-	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_100852771.1\|41609_42584_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_087741209.1\|43023_44028_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004883563.1\|44209_44482_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|44609_45449_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|45442_45790_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|45953_46745_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_071523897.1\|46750_46996_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|47152_47650_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|47794_48808_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|49010_49361_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|49486_50047_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_001138064.1\|50049_53016_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_087741209.1\|53094_54099_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_071527925.1\|54396_54639_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004118251.1\|54969_55263_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_004152282.1\|55361_56129_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004152281.1\|56129_57086_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004118243.1\|57082_58081_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118241.1\|58077_58980_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_032448473.1\|59024_61349_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118237.1\|61434_62388_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004118235.1\|62384_62906_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_161989521.1\|63867_64080_-	hypothetical protein	NA	NA	NA	NA
WP_004118231.1\|64008_64176_+\|integrase	integrase	NA	NA	NA	NA
76941:77269	attR	NA	NA	NA	NA

DBSCAN-SWA_2

76459 : 105552

Escherichia_phage(30.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020956879.1\|76459_76846_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	1.1e-58	90.7
WP_004118217.1\|77393_78029_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_000005560.1\|78025_79138_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118216.1\|79130_80519_-	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_000333416.1\|80518_80791_-	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_000412211.1\|82407_83067_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|83267_83645_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000427619.1\|83955_84960_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|86294_86999_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004153729.1\|87854_88682_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_004152695.1\|88678_89542_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|89550_90378_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|90386_91397_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|91390_92260_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000019473.1\|93467_94448_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004118209.1\|95649_95913_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|95927_96191_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|96434_96716_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|96750_97320_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|97434_100230_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152115.1\|100229_100427_+	hypothetical protein	NA	NA	NA	NA
WP_009483782.1\|100664_101414_+	diguanylate cyclase	NA	NA	NA	NA
WP_004152113.1\|101400_102363_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_020314316.1\|104205_105552_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP025037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP025037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025037_1

4205380-4205475

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025037_1

>merge|NZ_CP025037|1|4205380-4205475|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP025037|1|1|4205380-4205475|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025037.1\|WP_004151304.1\|4208354_4208639_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151305.1\|4208654_4209500_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP025037.1\|WP_004151285.1\|4199096_4199234_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151298.1\|4205861_4206008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151301.1\|4207756_4207972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151291.1\|4200984_4201632_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP025037.1\|WP_004230547.1\|4203549_4204965_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP025037.1\|WP_004151299.1\|4206355_4206589_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP025037.1\|WP_004151292.1\|4201628_4201805_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151295.1\|4203256_4203550_-\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP025037.1\|WP_004151286.1\|4199230_4199866_-\|protein-ninG	unknown	unknown	gnl\|CDD\|368603
NZ_CP025037.1\|WP_004151302.1\|4207968_4208079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151306.1\|4209496_4210177_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP025037.1\|WP_004151294.1\|4202753_4203260_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_001548453.1\|4206093_4206315_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP025037.1\|WP_004151288.1\|4200028_4200484_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP025037.1\|WP_004151293.1\|4201804_4202647_-\|translation-repressor-RelE	unknown	unknown	gnl\|CDD\|379401
NZ_CP025037.1\|WP_004151300.1\|4206716_4207406_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP025037.1\|WP_004151287.1\|4199858_4200029_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP025037.1\|WP_004151303.1\|4208071_4208266_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP025037.1\|WP_004151305.1\|4208654_4209500_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.75286e-34
NZ_CP025037.1\|WP_004151291.1\|4200984_4201632_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP025037.1\|WP_004230547.1\|4203549_4204965_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	9.32956e-159
NZ_CP025037.1\|WP_004151299.1\|4206355_4206589_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP025037.1\|WP_004151295.1\|4203256_4203550_-\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP025037.1\|WP_001548453.1\|4206093_4206315_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP025037.1\|WP_004151306.1\|4209496_4210177_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP025037.1\|WP_004151286.1\|4199230_4199866_-\|protein-ninG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP025037.1\|WP_004151288.1\|4200028_4200484_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP025037.1\|WP_004151293.1\|4201804_4202647_-\|translation-repressor-RelE	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP025037.1\|WP_004151300.1\|4206716_4207406_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP025037.1\|WP_004151287.1\|4199858_4200029_-\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19

>NZ_CP025037.1|WP_004230547.1|4203549_4204965_-|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP025037.1|WP_004151295.1|4203256_4203550_-|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP025037.1|WP_004151294.1|4202753_4203260_-|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP025037.1|WP_004151293.1|4201804_4202647_-|translation-repressor-RelE
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP025037.1|WP_004151292.1|4201628_4201805_-|hypothetical-protein
MAERWKIYLTIAFIGLGATPISMVAAKIDVPVWALIAGHCGATIAGFICAELGRGANQ
>NZ_CP025037.1|WP_004151291.1|4200984_4201632_-|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP025037.1|WP_004151288.1|4200028_4200484_-|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP025037.1|WP_004151287.1|4199858_4200029_-|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP025037.1|WP_004151286.1|4199230_4199866_-|protein-ninG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP025037.1|WP_004151285.1|4199096_4199234_-|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE
>NZ_CP025037.1|WP_004151298.1|4205861_4206008_-|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NZ_CP025037.1|WP_001548453.1|4206093_4206315_-|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP025037.1|WP_004151299.1|4206355_4206589_-|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP025037.1|WP_004151300.1|4206716_4207406_+|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP025037.1|WP_004151301.1|4207756_4207972_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP025037.1|WP_004151302.1|4207968_4208079_+|hypothetical-protein
MSKQGIRSLIYCLLICGVIWSAVVIKILHATGVFNG
>NZ_CP025037.1|WP_004151303.1|4208071_4208266_+|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP025037.1|WP_004151304.1|4208354_4208639_+|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP025037.1|WP_004151305.1|4208654_4209500_+|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP025037.1|WP_004151306.1|4209496_4210177_+|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK

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Crispr_ID: NZ_CP025037_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP025037_2

4689349-4689443

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP025037_2

>merge|NZ_CP025037|2|4689349-4689443|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP025037|2|2|4689349-4689443|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP025037.1\|WP_002888320.1\|4699992_4700472_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP025037.1\|WP_002888349.1\|4680978_4683336_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP025037.1\|WP_004147026.1\|4693001_4695350_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP025037.1\|WP_002888332.1\|4691930_4692758_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP025037.1\|WP_002888353.1\|4680107_4680803_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP025037.1\|WP_002888347.1\|4687176_4687716_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP025037.1\|WP_002888321.1\|4698888_4699737_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP025037.1\|WP_002888337.1\|4691199_4691898_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP025037.1\|WP_002888324.1\|4697682_4698504_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP025037.1\|WP_002888370.1\|4675564_4676410_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP025037.1\|WP_002888340.1\|4689584_4691210_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP025037.1\|WP_002888368.1\|4676747_4678457_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP025037.1\|WP_002888345.1\|4687895_4689260_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP025037.1\|WP_002888327.1\|4696696_4697686_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP025037.1\|WP_002888348.1\|4686442_4687102_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP025037.1\|WP_002888323.1\|4698506_4698884_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP025037.1\|WP_002888329.1\|4695404_4696691_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP025037.1\|WP_002888357.1\|4678467_4679970_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP025037.1\|WP_004219851.1\|4676395_4676566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP025037.1\|WP_004151368.1\|4683523_4686430_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319

Protein	Function_ID	Function_description	E-value
NZ_CP025037.1\|WP_002888320.1\|4699992_4700472_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP025037.1\|WP_002888349.1\|4680978_4683336_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP025037.1\|WP_004147026.1\|4693001_4695350_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP025037.1\|WP_002888332.1\|4691930_4692758_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP025037.1\|WP_002888353.1\|4680107_4680803_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP025037.1\|WP_002888347.1\|4687176_4687716_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP025037.1\|WP_002888321.1\|4698888_4699737_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP025037.1\|WP_002888324.1\|4697682_4698504_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP025037.1\|WP_002888370.1\|4675564_4676410_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP025037.1\|WP_002888340.1\|4689584_4691210_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP025037.1\|WP_002888368.1\|4676747_4678457_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP025037.1\|WP_002888345.1\|4687895_4689260_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP025037.1\|WP_002888327.1\|4696696_4697686_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP025037.1\|WP_002888348.1\|4686442_4687102_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP025037.1\|WP_002888323.1\|4698506_4698884_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP025037.1\|WP_002888329.1\|4695404_4696691_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP025037.1\|WP_002888357.1\|4678467_4679970_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP025037.1\|WP_002888337.1\|4691199_4691898_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP025037.1\|WP_004151368.1\|4683523_4686430_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0

>NZ_CP025037.1|WP_002888345.1|4687895_4689260_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP025037.1|WP_002888347.1|4687176_4687716_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP025037.1|WP_002888348.1|4686442_4687102_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP025037.1|WP_004151368.1|4683523_4686430_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP025037.1|WP_002888349.1|4680978_4683336_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP025037.1|WP_002888353.1|4680107_4680803_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP025037.1|WP_002888357.1|4678467_4679970_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP025037.1|WP_002888368.1|4676747_4678457_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP025037.1|WP_004219851.1|4676395_4676566_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP025037.1|WP_002888370.1|4675564_4676410_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP025037.1|WP_002888340.1|4689584_4691210_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP025037.1|WP_002888337.1|4691199_4691898_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP025037.1|WP_002888332.1|4691930_4692758_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP025037.1|WP_004147026.1|4693001_4695350_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP025037.1|WP_002888329.1|4695404_4696691_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP025037.1|WP_002888327.1|4696696_4697686_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP025037.1|WP_002888324.1|4697682_4698504_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP025037.1|WP_002888323.1|4698506_4698884_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP025037.1|WP_002888321.1|4698888_4699737_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP025037.1|WP_002888320.1|4699992_4700472_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP025037_1	1.1\|4205410\|36\|NZ_CP025037\|CRISPRCasFinder	4205410-4205445	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP025037_1	1.1\|4205410\|36\|NZ_CP025037\|CRISPRCasFinder	4205410-4205445	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP025037_1	1.1\|4205410\|36\|NZ_CP025037\|CRISPRCasFinder	4205410-4205445	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|4205410|36|NZ_CP025037|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|4205410|36|NZ_CP025037|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|4205410|36|NZ_CP025037|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

447698 : 480951

uncultured_Caudovirales_phage(75.0%)

tail,tRNA,protease,integrase,head,terminase,portal,capsid

attL 465301:465318|attR 481296:481313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|447698_448646_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|448660_449170_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|449298_450423_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|450394_450868_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|450893_451436_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|451440_452013_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|452016_452835_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|452831_453089_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|453064_453619_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|459409_459631_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|459924_463035_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|463047_464187_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|464565_465216_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
465301:465318	attL	NA	NA	NA	NA
WP_004150971.1\|465491_466718_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|466810_467752_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|467933_468218_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|468228_469008_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_157263200.1\|469510_469729_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.4e-34	94.4
WP_001549752.1\|469721_469910_+	hypothetical protein	NA	NA	NA	NA
WP_004218267.1\|469986_470115_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|470213_470582_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|470578_470944_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|470943_473079_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|473421_473757_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|473805_474318_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|474581_475748_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|475799_476360_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_058877085.1\|476361_477603_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.9e-230	96.3
WP_004150961.1\|477599_477935_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|477931_478231_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|478230_478674_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004150957.1\|478666_478819_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_000113647.1\|478949_479306_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|479289_480951_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
481296:481313	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1237419 : 1283654

Salmonella_phage(83.72%)

plate,tail,tRNA,integrase,head,terminase,lysis,portal,capsid,coat

attL 1235714:1235760|attR 1272280:1272326

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1235714:1235760	attL	NA	NA	NA	NA
WP_004151020.1\|1237419_1238445_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.5e-190	93.8
WP_004151019.1\|1238447_1239077_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1239199_1239442_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1239474_1239984_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1239991_1240192_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1240155_1240494_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1240561_1240795_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1240794_1241022_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1241018_1241870_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1241866_1244251_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004151011.1\|1244413_1244602_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1244613_1244847_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1244942_1245626_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1245612_1246692_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1246691_1247693_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1248214_1248484_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1248540_1249584_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1249583_1251347_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1251487_1252321_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1252337_1253390_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1253393_1254047_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1254142_1254607_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1254606_1254810_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1254813_1255029_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1255009_1255519_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1255523_1255907_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1255903_1256332_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_072093160.1\|1256306_1256465_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150997.1\|1256427_1256850_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1256842_1257289_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1257311_1258178_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1258272_1258845_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1258841_1259204_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1259190_1260099_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1260091_1260763_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1260764_1262714_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1262723_1263842_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1263893_1264967_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1265115_1266288_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1266297_1266813_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1266865_1267165_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1267179_1267299_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_072093161.1\|1267525_1269922_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.1e-107	44.5
WP_004150983.1\|1269918_1270404_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1270400_1271495_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1271561_1271780_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1271807_1272185_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1272788_1273271_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1272280:1272326	attR	NA	NA	NA	NA
WP_004188817.1\|1273381_1273858_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1273847_1274138_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1274204_1274546_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004145681.1\|1274527_1274668_-	hypothetical protein	NA	NA	NA	NA
WP_002914159.1\|1274693_1276355_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1276441_1277320_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1277444_1278035_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1278154_1279441_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1279460_1280252_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1280415_1281780_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1282039_1282288_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1282306_1282855_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1282886_1283654_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1388375 : 1433215

Salmonella_phage(38.0%)

integrase,holin,terminase,tail

attL 1390939:1390953|attR 1402119:1402133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1388375_1389842_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1389909_1391487_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
1390939:1390953	attL	NA	NA	NA	NA
WP_004152549.1\|1391679_1392930_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	1.4e-206	85.3
WP_004152548.1\|1392946_1393138_-	hypothetical protein	NA	NA	NA	NA
WP_004152547.1\|1393134_1393317_-	hypothetical protein	NA	NA	NA	NA
WP_004152546.1\|1393313_1393907_-	adenine methylase	T1SA14	Salmonella_phage	4.3e-110	92.4
WP_004152545.1\|1393903_1394062_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
WP_004153052.1\|1394054_1394348_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
WP_004152543.1\|1394457_1394706_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	1.1e-27	69.5
WP_004152542.1\|1394757_1395780_-	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-180	95.3
WP_004152541.1\|1395789_1396689_-	endonuclease	Q858E0	Salmonella_phage	1.5e-159	93.0
WP_004164029.1\|1396685_1396985_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004164037.1\|1396981_1397131_-	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
WP_004152539.1\|1397351_1397933_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	1.9e-65	64.8
WP_004152538.1\|1398086_1398320_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1398466_1398676_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004207253.1\|1398675_1399443_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_004152535.1\|1399439_1400225_+	replication protein	A0A193GYX1	Enterobacter_phage	8.2e-133	87.4
WP_004152534.1\|1400344_1400692_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.0e-50	82.6
WP_004152532.1\|1400884_1401295_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	3.1e-14	42.2
WP_004152531.1\|1401278_1401470_+	hypothetical protein	NA	NA	NA	NA
WP_004152530.1\|1401466_1401892_+	hypothetical protein	NA	NA	NA	NA
WP_004152529.1\|1401888_1402632_+	hypothetical protein	A6N3G8	Burkholderia_virus	1.5e-19	59.5
1402119:1402133	attR	NA	NA	NA	NA
WP_004152528.1\|1402631_1402802_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.5e-15	69.6
WP_004141386.1\|1402802_1403015_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_004152527.1\|1403011_1403680_+	DUF551 domain-containing protein	Q6UAT8	Klebsiella_phage	1.5e-05	52.5
WP_004152526.1\|1403672_1403912_+	hypothetical protein	G8C7S3	Escherichia_phage	4.6e-10	48.0
WP_004152525.1\|1403911_1404250_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.7e-45	80.0
WP_004152524.1\|1404324_1404582_+	hypothetical protein	NA	NA	NA	NA
WP_004152523.1\|1404659_1405244_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.4e-89	88.1
WP_004154331.1\|1405240_1406716_+	hypothetical protein	Q858H3	Salmonella_phage	3.8e-280	93.1
WP_004152449.1\|1406782_1407094_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	2.5e-16	45.2
WP_004141368.1\|1407895_1408102_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_058876079.1\|1408116_1409796_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	4.3e-264	84.2
WP_004152446.1\|1409792_1410089_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_004152445.1\|1410091_1410772_+	peptidase	G9L6C4	Escherichia_phage	4.0e-75	83.5
WP_032413483.1\|1410786_1411773_+	phage protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_004152443.1\|1411826_1412264_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	4.8e-66	91.0
WP_004152442.1\|1412274_1412616_+	hypothetical protein	G9L6C7	Escherichia_phage	4.0e-36	70.8
WP_004152441.1\|1412666_1412990_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_004152440.1\|1412989_1413595_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	2.8e-88	78.5
WP_004152439.1\|1413594_1416093_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.0
WP_004152438.1\|1416092_1416557_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_004152437.1\|1416556_1417096_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	6.1e-71	80.0
WP_004152436.1\|1417106_1419938_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	75.7
WP_004152435.1\|1419937_1421848_+	hypothetical protein	Q858F9	Salmonella_phage	5.2e-290	81.9
WP_004152434.1\|1421847_1424613_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	94.5
WP_071531206.1\|1424755_1425139_+	hypothetical protein	NA	NA	NA	NA
WP_004152433.1\|1425224_1425914_-	hypothetical protein	G9L6E2	Escherichia_phage	1.6e-79	65.2
WP_004152432.1\|1426228_1426525_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	1.1e-24	64.0
WP_004207261.1\|1426681_1429048_+	hypothetical protein	A0A2H5BN49	Klebsiella_phage	9.1e-268	79.5
WP_004229092.1\|1429056_1429209_+	hypothetical protein	A0A2H5BN82	Klebsiella_phage	1.9e-06	54.3
WP_004146394.1\|1429332_1429737_+	membrane protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_004146393.1\|1429723_1430029_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	82.4
WP_004152706.1\|1430018_1430648_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	3.1e-90	76.4
WP_004152707.1\|1430644_1431127_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	3.0e-61	80.6
WP_004152009.1\|1431346_1433215_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1761937 : 1768844

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1761937_1762801_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_002912638.1\|1762811_1763585_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004151134.1\|1763827_1764724_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912635.1\|1764966_1766328_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_002912634.1\|1766646_1767369_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_004151135.1\|1767365_1768844_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3

DBSCAN-SWA_5

1805404 : 1813029

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152488.1\|1805404_1806811_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004152487.1\|1807035_1808100_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
WP_004152486.1\|1808126_1808996_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	67.0
WP_004152485.1\|1809027_1809918_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	33.6
WP_004152484.1\|1809932_1810487_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.8e-52	58.2
WP_004152483.1\|1810667_1811834_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004152482.1\|1812027_1813029_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	28.6

DBSCAN-SWA_6

2193699 : 2250186

Staphylococcus_phage(18.18%)

plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910830.1\|2193699_2194446_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_002910809.1\|2194884_2195871_+	fatty acid desaturase	NA	NA	NA	NA
WP_004151439.1\|2195863_2196664_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_002910767.1\|2196650_2196824_-	hypothetical protein	NA	NA	NA	NA
WP_004219597.1\|2197121_2197265_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|2197441_2198383_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|2198476_2199466_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004145486.1\|2199491_2200823_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_002910759.1\|2200850_2202059_+	propionate kinase	NA	NA	NA	NA
WP_004152312.1\|2202087_2204382_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.3e-159	41.8
WP_004225356.1\|2204433_2204580_-	hypothetical protein	NA	NA	NA	NA
WP_002910729.1\|2204869_2205928_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002910727.1\|2206037_2206952_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_002910725.1\|2206961_2208239_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_002910722.1\|2208235_2209111_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.5e-05	41.5
WP_002910721.1\|2209107_2209827_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-11	26.0
WP_002910720.1\|2209832_2210726_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910719.1\|2211009_2212653_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.8e-136	50.4
WP_002910717.1\|2212702_2213179_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002910715.1\|2213277_2214204_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152313.1\|2214507_2215803_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.3e-61	36.8
WP_004899032.1\|2215814_2216624_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004152315.1\|2216598_2217498_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910657.1\|2217607_2218090_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_004219568.1\|2218187_2218979_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.0e-05	27.2
WP_002910652.1\|2219004_2219544_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|2219658_2219988_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_004148795.1\|2220158_2220320_+	hypothetical protein	NA	NA	NA	NA
WP_002910645.1\|2220556_2221897_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004152316.1\|2221893_2222547_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004152317.1\|2222550_2224248_+	OmpA family protein	NA	NA	NA	NA
WP_004152319.1\|2227211_2228567_+	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|2228567_2229077_+	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|2229073_2229580_+	hypothetical protein	NA	NA	NA	NA
WP_002910589.1\|2229674_2229827_+	hypothetical protein	NA	NA	NA	NA
WP_002910586.1\|2229816_2230326_+	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|2231931_2232900_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_004199326.1\|2233041_2233224_+	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2233220_2233550_+	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|2233546_2234053_+	hypothetical protein	NA	NA	NA	NA
WP_004199323.1\|2235562_2235874_+	hypothetical protein	NA	NA	NA	NA
WP_100852747.1\|2235895_2236789_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_004217423.1\|2236834_2236951_+	hypothetical protein	NA	NA	NA	NA
WP_004152633.1\|2236972_2237866_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_038435084.1\|2237891_2238020_+	hypothetical protein	NA	NA	NA	NA
WP_002910539.1\|2238041_2238935_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_004152632.1\|2239110_2240001_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_000019473.1\|2240337_2241318_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_072093175.1\|2241543_2241678_+	hypothetical protein	NA	NA	NA	NA
WP_072093174.1\|2241938_2242124_+	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2242421_2242688_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004198077.1\|2242691_2243849_+	hypothetical protein	NA	NA	NA	NA
WP_004152262.1\|2243832_2247243_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_002910495.1\|2247376_2249140_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152910.1\|2249169_2250186_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_7

2906139 : 2915553

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160463746.1\|2906139_2907774_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_004151612.1\|2907828_2909094_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2909124_2910213_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2910299_2910560_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2910857_2911718_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2911738_2912500_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2912760_2913663_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2913674_2914940_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2914932_2915553_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_8

3134275 : 3177321

Klebsiella_phage(33.33%)

integrase,terminase,transposase

attL 3168434:3168448|attR 3174443:3174457

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014343022.1\|3134275_3137299_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.6e-22	44.7
WP_004152577.1\|3137354_3137552_-	hypothetical protein	NA	NA	NA	NA
WP_004231602.1\|3137526_3137658_-	hypothetical protein	NA	NA	NA	NA
WP_004231600.1\|3137778_3137943_-	hypothetical protein	NA	NA	NA	NA
WP_004152575.1\|3138417_3139191_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3139187_3140384_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3140383_3140737_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3140738_3141392_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004225248.1\|3141445_3141796_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3142048_3142234_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3142286_3142628_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3142627_3143650_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004217362.1\|3143652_3143880_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004225238.1\|3143955_3144369_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	8.1e-31	55.9
WP_004152566.1\|3144554_3146558_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3146547_3146700_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3146735_3147161_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_085955245.1\|3147487_3148679_+\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152178.1\|3148620_3148911_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_004152177.1\|3148921_3150067_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3150070_3150511_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3150605_3150992_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3150991_3151498_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3151494_3151914_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3151882_3152164_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3152203_3153145_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3153156_3153651_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3153654_3154857_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3154908_3155457_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3155512_3156964_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3157201_3158602_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004218030.1\|3158552_3159041_-	hypothetical protein	NA	NA	NA	NA
WP_004152170.1\|3159406_3159727_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3159961_3160351_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3160347_3160878_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3160880_3161129_-	hypothetical protein	NA	NA	NA	NA
WP_004218026.1\|3161146_3161275_+	hypothetical protein	NA	NA	NA	NA
WP_004152168.1\|3161312_3161468_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3161534_3162317_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3162313_3162790_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3162786_3163749_-	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3163750_3165409_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|3165983_3166205_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3166302_3166971_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3167141_3167456_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3167448_3167637_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004218017.1\|3168010_3168172_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
WP_004152157.1\|3168164_3168419_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
3168434:3168448	attL	NA	NA	NA	NA
WP_004146412.1\|3168486_3168609_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.3e-16	100.0
WP_004152156.1\|3168605_3169031_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3169027_3169222_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3169218_3170046_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3170150_3170669_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3170674_3171385_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3171374_3171599_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004218013.1\|3171694_3171808_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	4.6e-13	100.0
WP_014343018.1\|3172050_3172284_+	hypothetical protein	NA	NA	NA	NA
WP_004198245.1\|3172356_3172503_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_004152148.1\|3172462_3172705_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3172685_3173867_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3174063_3174612_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3174443:3174457	attR	NA	NA	NA	NA
WP_004152145.1\|3174810_3176343_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3176559_3177321_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_9

3522741 : 3547585

Pectobacterium_phage(29.17%)

integrase,head,tail,protease

attL 3536180:3536193|attR 3550312:3550325

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004191050.1\|3522741_3523215_-	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3
WP_004191051.1\|3523253_3524249_-	hypothetical protein	W6MW28	Pseudomonas_phage	2.7e-104	60.2
WP_004191053.1\|3524259_3525018_-	hypothetical protein	NA	NA	NA	NA
WP_029503969.1\|3525004_3525328_-	hypothetical protein	NA	NA	NA	NA
WP_100852757.1\|3525330_3526995_-\|head,tail	phage head-tail adapter protein	A0A221SAN2	Ralstonia_phage	3.1e-105	39.4
WP_009308353.1\|3526994_3528389_-	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	3.1e-58	36.9
WP_020947865.1\|3528473_3528926_-	hypothetical protein	A3EYX3	Salmonella_phage	1.5e-49	66.4
WP_009308351.1\|3528932_3529193_-	hypothetical protein	NA	NA	NA	NA
WP_048256716.1\|3529176_3529410_-	hypothetical protein	NA	NA	NA	NA
WP_048256713.1\|3529478_3529772_-	hypothetical protein	G8C7W3	Escherichia_phage	1.4e-29	70.1
WP_023316634.1\|3529768_3530125_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_072071501.1\|3530112_3530436_-	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	2.3e-25	55.8
WP_048256710.1\|3530425_3531019_-	DUF1367 family protein	H9C173	Pectobacterium_phage	2.7e-80	71.6
WP_029499143.1\|3531087_3531279_-	hypothetical protein	NA	NA	NA	NA
WP_048256707.1\|3531457_3531799_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	7.4e-46	82.0
WP_048256704.1\|3531811_3532429_-	hypothetical protein	NA	NA	NA	NA
WP_009308338.1\|3532425_3532656_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.9e-06	38.7
WP_009308336.1\|3532658_3533249_-	adenine methylase	A0A2R9YJG0	Escherichia_phage	4.3e-94	84.7
WP_029499137.1\|3533376_3534162_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.5e-62	51.4
WP_004141586.1\|3534201_3534435_-	hypothetical protein	NA	NA	NA	NA
WP_009308333.1\|3534438_3535089_-	hypothetical protein	NA	NA	NA	NA
WP_048256698.1\|3535127_3536516_-	AAA family ATPase	Q8HA30	Enterobacteria_phage	3.4e-105	47.1
3536180:3536193	attL	NA	NA	NA	NA
WP_162859350.1\|3536512_3537496_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	5.1e-39	72.9
WP_016197573.1\|3537498_3537657_-	hypothetical protein	NA	NA	NA	NA
WP_004199487.1\|3537740_3538187_-	hypothetical protein	H9C162	Pectobacterium_phage	7.4e-30	56.1
WP_024623103.1\|3538247_3538442_-	hypothetical protein	K7PHK4	Enterobacteria_phage	1.7e-07	45.9
WP_024623104.1\|3538521_3538923_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.7e-39	60.2
WP_029499124.1\|3539863_3540097_+	hypothetical protein	NA	NA	NA	NA
WP_009308322.1\|3540104_3540350_+	hypothetical protein	A0A1B1W282	Salmonella_phage	1.8e-14	58.1
WP_048256693.1\|3540379_3542509_+	hypothetical protein	H9C157	Pectobacterium_phage	2.9e-95	34.2
WP_009308318.1\|3542508_3543075_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.5e-51	61.5
WP_004141609.1\|3543076_3543262_+	hypothetical protein	H9C155	Pectobacterium_phage	8.1e-07	44.3
WP_004199480.1\|3543471_3543696_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_073579172.1\|3543699_3544728_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.6e-94	54.1
WP_004150834.1\|3545003_3546656_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002898458.1\|3546925_3547585_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
3550312:3550325	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3632374 : 3726142

Salmonella_phage(56.67%)

plate,tail,tRNA,protease,integrase,head,lysis,terminase,portal,capsid,transposase

attL 3687901:3687919|attR 3726217:3726235

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3632374_3633667_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3633757_3635101_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3635109_3635721_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3635843_3640097_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_020314624.1\|3640232_3640727_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004147787.1\|3641010_3641142_-	hypothetical protein	NA	NA	NA	NA
WP_002898019.1\|3641259_3642228_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3642342_3644109_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3644109_3645831_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|3645857_3646577_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3646930_3647149_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3647270_3649550_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3649580_3649898_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3650223_3650445_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3650521_3652462_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3652458_3653574_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3653720_3655379_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3655798_3656494_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3656609_3657509_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3657652_3659305_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3659315_3660284_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3660495_3660930_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3661081_3662800_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3662838_3663840_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3663850_3665293_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3665380_3666394_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3666390_3667221_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3667252_3668392_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3669269_3669785_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3670011_3670740_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3670760_3671492_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3671498_3672215_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3672214_3672883_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3673066_3673798_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3673840_3675313_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3675309_3676026_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3676104_3677232_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3677273_3677762_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3677819_3678665_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3678661_3679615_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3679625_3680759_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3680922_3682035_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3682383_3682863_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3682951_3683854_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3684675_3684963_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3685165_3685429_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3685435_3685819_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3686085_3687771_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_004226292.1\|3687762_3687885_-	hypothetical protein	NA	NA	NA	NA
3687901:3687919	attL	NA	NA	NA	NA
WP_000972391.1\|3687990_3688209_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3688300_3689401_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3689397_3689883_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_014342962.1\|3689879_3692273_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896220.1\|3692499_3692619_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3692633_3692933_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3692985_3693501_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3693510_3694683_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3694821_3695898_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_004232615.1\|3695927_3696089_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3696127_3696859_-	hypothetical protein	NA	NA	NA	NA
WP_162859351.1\|3696862_3698359_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3698340_3699321_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_094683695.1\|3699361_3700630_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	5.1e-07	50.9
WP_004150856.1\|3700631_3701231_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3701223_3702132_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896179.1\|3702118_3702481_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896177.1\|3702477_3703050_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004226282.1\|3703164_3703329_-	hypothetical protein	NA	NA	NA	NA
WP_004199112.1\|3703327_3703837_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3703833_3704280_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3704272_3704704_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896170.1\|3704666_3704813_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896168.1\|3704799_3705228_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3705224_3705608_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3705612_3706122_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3706102_3706318_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3706321_3706525_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3706524_3706989_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3707084_3707735_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3707738_3708797_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3708813_3709647_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3709789_3711556_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3711555_3712581_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_100852760.1\|3712642_3714385_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3714660_3715338_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3715452_3715686_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3715696_3715885_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3716038_3718453_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3718449_3719307_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3719303_3719531_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3719530_3719764_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3719831_3720173_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3720136_3720337_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3720344_3720854_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3720886_3721108_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3721253_3722132_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3722143_3723088_+	hypothetical protein	NA	NA	NA	NA
WP_004178082.1\|3723186_3724674_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_014342959.1\|3725161_3726142_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
3726217:3726235	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4171225 : 4216500

Escherichia_phage(26.42%)

integrase,head,lysis,tRNA

attL 4164443:4164489|attR 4213572:4213618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4164443:4164489	attL	NA	NA	NA	NA
WP_004151249.1\|4171225_4173703_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
WP_004151250.1\|4173689_4174085_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004199076.1\|4174081_4174552_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004151252.1\|4174551_4175028_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.7
WP_004151253.1\|4175070_4178517_-	tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151254.1\|4178609_4179113_-	hypothetical protein	NA	NA	NA	NA
WP_004151255.1\|4179240_4180026_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151256.1\|4180091_4180805_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151257.1\|4180794_4180965_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151258.1\|4181064_4181424_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151259.1\|4181440_4181911_-	hypothetical protein	NA	NA	NA	NA
WP_004151260.1\|4182204_4182459_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151261.1\|4182461_4183217_-	DNA-binding protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151262.1\|4183392_4184070_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151263.1\|4184122_4184875_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151264.1\|4184943_4185336_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|4185332_4185758_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151266.1\|4185760_4186123_-	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151267.1\|4186122_4186296_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151268.1\|4186295_4186676_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151269.1\|4186678_4186918_-	hypothetical protein	NA	NA	NA	NA
WP_004151270.1\|4186928_4188023_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151271.1\|4188034_4188463_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151272.1\|4188466_4189852_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151273.1\|4189924_4190401_-	hypothetical protein	NA	NA	NA	NA
WP_004151274.1\|4190442_4191447_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151275.1\|4191421_4192843_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151276.1\|4192855_4194328_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151277.1\|4194327_4194930_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151279.1\|4195300_4195630_+	hypothetical protein	NA	NA	NA	NA
WP_004151280.1\|4195735_4196200_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151281.1\|4196196_4196727_-	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151282.1\|4196729_4196978_-	hypothetical protein	NA	NA	NA	NA
WP_004151283.1\|4197887_4198577_-	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151284.1\|4198573_4199104_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151285.1\|4199096_4199234_-	YlcG family protein	NA	NA	NA	NA
WP_004151286.1\|4199230_4199866_-	protein ninG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151287.1\|4199858_4200029_-	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151288.1\|4200028_4200484_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151291.1\|4200984_4201632_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151292.1\|4201628_4201805_-	hypothetical protein	NA	NA	NA	NA
WP_004151293.1\|4201804_4202647_-	translation repressor RelE	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151294.1\|4202753_4203260_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151295.1\|4203256_4203550_-	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004230547.1\|4203549_4204965_-	AAA family ATPase	Q9MCT4	Escherichia_phage	1.8e-183	67.1
WP_004230546.1\|4204969_4205821_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.3e-85	56.3
WP_004151298.1\|4205861_4206008_-	hypothetical protein	NA	NA	NA	NA
WP_001548453.1\|4206093_4206315_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151299.1\|4206355_4206589_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_004151300.1\|4206716_4207406_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151301.1\|4207756_4207972_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151302.1\|4207968_4208079_+	hypothetical protein	NA	NA	NA	NA
WP_004151303.1\|4208071_4208266_+	hypothetical protein	NA	NA	NA	NA
WP_004151304.1\|4208354_4208639_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151305.1\|4208654_4209500_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
WP_004151306.1\|4209496_4210177_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151308.1\|4210173_4210332_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151310.1\|4210328_4210985_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151312.1\|4210981_4211749_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151314.1\|4211745_4211964_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151316.1\|4211965_4212181_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151317.1\|4212182_4212518_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004151318.1\|4212394_4213558_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.3e-202	87.3
WP_004143017.1\|4213988_4214855_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
4213572:4213618	attR	NA	NA	NA	NA
WP_004143016.1\|4214856_4215069_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4215114_4216500_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_12

4426055 : 4437709

Enterobacteria_phage(70.0%)

integrase

attL 4425907:4425920|attR 4430120:4430133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4425907:4425920	attL	NA	NA	NA	NA
WP_004144574.1\|4426055_4427159_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
WP_002889940.1\|4427169_4428423_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4428775_4429966_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4429953_4430904_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
4430120:4430133	attR	NA	NA	NA	NA
WP_004152979.1\|4430903_4431329_+	hypothetical protein	NA	NA	NA	NA
WP_020802988.1\|4431675_4431825_-	hypothetical protein	NA	NA	NA	NA
WP_002889930.1\|4431897_4432464_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_002889919.1\|4432481_4432727_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889917.1\|4432723_4433461_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_004903606.1\|4433760_4433898_-	hypothetical protein	NA	NA	NA	NA
WP_002889915.1\|4434002_4434269_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_072028197.1\|4434271_4434823_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4434819_4435047_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4435043_4435364_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4435375_4437709_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2

DBSCAN-SWA_13

4907146 : 4912971

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4907146_4909480_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4909494_4909815_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4909811_4910039_-	hypothetical protein	NA	NA	NA	NA
WP_072093163.1\|4910035_4910578_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_000556592.1\|4910580_4910847_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004152204.1\|4911407_4912145_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4912141_4912387_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4912404_4912971_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage